Commit Graph

20182 Commits

Author SHA1 Message Date
Erik Schnetter
d08520cb15
mpitrampoline: Correct build environment (#30549) 2022-05-09 13:40:10 +02:00
Erik Schnetter
5397dcee51
simulationio: add v9.0.2 (#30550) 2022-05-09 13:39:18 +02:00
Adam J. Stewart
d62e4b1d66
py-radiant-mlhub: add new versions (#30555) 2022-05-09 12:44:49 +02:00
Adam J. Stewart
9ed1c76486
py-cartopy: add new versions (#30554) 2022-05-09 12:44:33 +02:00
Adam J. Stewart
10efbc071f
py-geocube: add v0.3.1 (#30558) 2022-05-09 12:44:01 +02:00
Massimiliano Culpo
d517dcdc71
tcl: add v8.6.12 (#30560) 2022-05-09 11:12:16 +02:00
Erik Schnetter
1bde91735b
mpitrampoline: New version 4.0.2 (#30548) 2022-05-09 10:01:41 +02:00
Erik Schnetter
335083d2dc
openssl: Update to 1.1.1o (#30551) 2022-05-08 22:57:37 -06:00
Erik Schnetter
adc8a2ca00
curl: New version 7.83.0 (#30552) 2022-05-09 00:36:03 +02:00
Derek Ryan Strong
dc6d45c8b4
Add latest Lmod 8.6, 8.7 (#30542)
Co-authored-by: Harmen Stoppels <harmenstoppels@gmail.com>
2022-05-07 20:04:10 -06:00
Harmen Stoppels
fcaf9c8cdf
gcc: version 12.1.0 (#30537) 2022-05-07 19:28:54 -06:00
Phil Carns
1f74dc63dc
Add mochi-margo 0.9.9 (#30539)
- necessary for compatibility with upcoming Mercury 2.2.0 release
2022-05-07 19:28:36 -06:00
Francesco Di Natale
ceaad43e54
Addition of 1.1.9dev version for py-maestrowf (#30523)
* Addition of 1.1.9dev version.

* Small style fix -- extra blank line.

* Update var/spack/repos/builtin/packages/py-maestrowf/package.py

Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>

* Update var/spack/repos/builtin/packages/py-maestrowf/package.py

Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>

* Update var/spack/repos/builtin/packages/py-maestrowf/package.py

Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>

* Update var/spack/repos/builtin/packages/py-maestrowf/package.py

Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>

* Additional dependencies and version constraints.

* Revert to py-poetry.

* Remove run from cryptography (build only).

Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>
2022-05-07 19:28:23 -06:00
Erik
4c8eb92314
Put make() inside a self.run_test call (#30536) 2022-05-07 18:45:57 -06:00
Ryan Marcellino
89775e32c0
vim: add +gtk variant to pair with +gui (#30520)
* vim: add +gtk3 variant to pair with +gui

* address review comments
2022-05-07 17:49:33 -06:00
WYF
654a07d642
nmap: fix build issue (#30429) 2022-05-07 03:02:26 +02:00
JDBetteridge
dfdbd1151d
Eigen: turn on BUILD_TESTING for build to complete (#30528)
Co-authored-by: Massimiliano Culpo <massimiliano.culpo@gmail.com>
2022-05-06 16:28:33 -06:00
Sebastian Schmitt
22f3ef0a21
Add sphinx-tabs package (#27698)
* Add py-docutils@0.16

* Add sphinx-tabs package

* Update var/spack/repos/builtin/packages/py-sphinx-tabs/package.py

Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>

* Update var/spack/repos/builtin/packages/py-sphinx-tabs/package.py

Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>

* Update var/spack/repos/builtin/packages/py-sphinx-tabs/package.py

Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>

Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>
2022-05-06 10:33:38 -05:00
Jim Galarowicz
165bcf5cc3
openspeedshop: fix missing import statement (#30506) 2022-05-06 10:27:09 -05:00
eugeneswalker
c2afb4b916
arborx: inherit from CudaPackage, ROCmPackage (#30490) 2022-05-06 16:18:06 +02:00
Thomas Dickerson
6c6685b5fa
boost: add support for alternate boost-context backends (#30496)
The fcontext backend is the default high-performance backend.
The ucontext backend is needed when using Boost context in conjunction with ASAN.
The WinFibers backend...also exists.

https://www.boost.org/doc/libs/1_79_0/libs/context/doc/html/context/cc/implementations__fcontext_t__ucontext_t_and_winfiber.html
2022-05-06 16:14:45 +02:00
Ken Raffenetti
17c32811fb
level-zero: add new package (#30253)
Co-authored-by: Robert Cohn <rscohn2@gmail.com>
Co-authored-by: Robert Cohn <robert.s.cohn@intel.com>
Co-authored-by: John Mellor-Crummey <johnmc@rice.edu>
2022-05-06 16:12:23 +02:00
WYF
ad1391db75
gdb: fix run issue with v9.2 (#30491) 2022-05-06 07:53:40 -06:00
Chuck Atkins
d8e010a9f5
ci: Enable the ParaView GUI in the DAVSDK pipeline (#30473)
* ci: Enable the ParaView GUI in the DAVSDK pipeline

* qt: Patch for long paths in ci
2022-05-06 09:36:56 -04:00
Seth R. Johnson
5a55e78073
py-qrcode: new package (#30529) 2022-05-06 07:05:53 -06:00
Todd Gamblin
c1007efe5a
slurm: add new versions to address CVEs 2022-29500, 2022-29501 and 2022-29502 (#30525)
Due to CVE 2022-29500, CVE 2022-29501, and CVE 2022-29502, SLURM versions prior to
21.08.8 and 20.11.9 are deprecated.

See:
* https://www.schedmd.com/news.php?id=260#OPT_260
* https://cve.report/CVE-2022-29500
* https://cve.report/CVE-2022-29501
* https://cve.report/CVE-2022-29502

- [x] Deprecate versions prior to 21.08.8 and 20.11.9
- [x] Add 21-08-8-1, 21-08-8-2, and 20-11-9-1
2022-05-06 07:05:41 -06:00
Brian Van Essen
afc2d4284a
Added a version for a tag that sets a stable version of master to pull (#30511) 2022-05-06 01:45:38 -06:00
Tom Scogland
d3a0ac1c0a
Preserve jobserver file descriptors into build environment (#30302)
This ensures that multiple spack instances called from `make` will respect the maximum number of jobs in the POSIX jobserver across packages.

Co-authored-by: Harmen Stoppels <harmenstoppels@gmail.com>
2022-05-06 04:09:58 +00:00
Jim Galarowicz
3137e7c61b
Add two critical fixes and update for version 1.0.4 (#30507) 2022-05-05 18:37:52 -06:00
Mark Grondona
202214d855
flux-sched: add patch for signedness compare issue on gcc@9.40 (#30514)
Problem: GCC 9.4.0 catches a bad integer comparison in
resource/hlapi/bindings/c++/reapi_cli_impl.hpp in flux-sched@0.22.0
and current master.

Add a patch to work around the problem until an upstream fix is
available.
2022-05-06 00:11:04 +00:00
Ken Raffenetti
b6e1cbd86d
mpich: Add ROCm variant (#30502)
* mpich: Add ROCm variant

* fixup
2022-05-05 15:49:41 -06:00
Gregory Lee
e6d1c2d9f3
updated stat build dep requirements (#30505) 2022-05-05 20:24:43 +00:00
Niclas Jansson
1a368419da
neko: Add version 0.3.2 (#30497)
* neko: Add version 0.3.2

* Switch to sha256

Co-authored-by: Tamara Dahlgren <35777542+tldahlgren@users.noreply.github.com>

* Fix url pattern

Co-authored-by: Tamara Dahlgren <35777542+tldahlgren@users.noreply.github.com>
2022-05-05 20:12:48 +00:00
Brian Van Essen
0dd9e5c86f
Enable PyTorch 1.10.x to build on Power systems (#30494)
* Use patches from IBM's Open CE project to enable PyTorch to build on
Power systems.

Cherry-pick a patch to allow earlier versions of PyTorch to build with
CUDA 11.4.

* Update var/spack/repos/builtin/packages/py-torch/package.py

Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>

Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>
2022-05-05 16:38:45 +00:00
Tamara Dahlgren
011a491b16
package audit: ensure stand-alone test method not include in build-phase testing (#30352) 2022-05-05 18:04:16 +02:00
Massimiliano Culpo
c9714533f3
clingo: add v5.5.2 (#30495)
* clingo add v5.5.2

* Unify dependencies for @spack and @master
2022-05-05 08:58:23 -07:00
David
faeffdfaf2
Update totalview package.py with new version and maintainer (#30341)
* Update totalview package.py with new version and maintainer

* Update totalview/package.py version order

Co-authored-by: Tamara Dahlgren <35777542+tldahlgren@users.noreply.github.com>

Co-authored-by: Tamara Dahlgren <35777542+tldahlgren@users.noreply.github.com>
2022-05-05 08:37:56 -07:00
Dom Heinzeller
a15a69a769
Bug fix for mesa-glu: if gl is provided by mesa, need to specify argument to ./configure (#30082) 2022-05-05 08:35:54 -07:00
Hans Fangohr
9a33121859
octopus: update to 11.4 and add tests (#30321)
* octopus: adding versions up to 11.4

* octopus: add smoke tests

* octopus: add necessary flags for gcc@10

* octopus: update to compilation and dependencies

* octopus: adding new variants

* octopus: remove 'poke' (as this poke is not in spack [yet])

* octopus: allow compilation from git repo develop branch

* octopus: adapt to spack style requirements

* octopus: add maintainer

* octopus: make tests after install optional

Thank you @tldahlgren

* octopus: follow recommended practice for test input data

Move the two configuration files we use for smoke tests into `test`
subdirectory. Thanks @tldahlgren.

* Adding maintainer

with their agreement by email

* octopus: reduce duplication of flags

- part of code review

* octopus: https is preferred over http

* octopus: remove .99 from versioning information

Thanks to https://github.com/spack/spack/pull/26402, we can drop the
"2:3.99" notation when we mean all versions 2.x and 3.x

Examples: b9e72557e8 (diff-b8373d30b3a141c495c2281273ee6184fc513413142afaf2adac1f406cd6b0d7)

(from review)

* octopus: args.extend([x]) -> args.append(x)

(hint from review)
2022-05-05 08:33:16 -07:00
Ken Raffenetti
e88396e5ed
yaksa: Add support for cuda_arch variants (#30471) 2022-05-05 08:12:21 -07:00
Harmen Stoppels
dcd2f8a4ed
ucx: overhaul package recipe (#30215)
- hyphens to underscore in variant names (e.g. `~ib_hw_tm` instead of `~ib-hw-tm`)
- disable docs, disable go, drop the unused `doc` variant
- `+static +shared` => `libs=static,shared`
- `vfs` support (add libfuse@3: dep)
- fix `backtrace_detail` for UCX 1.12+ (`--enable-backtrace-detail` => `--with-bfd`)
- group variants and sort
2022-05-05 15:07:34 +02:00
Valentin Volkl
381ec8abac
baurmc: add new package (#30245)
Co-authored-by: Massimiliano Culpo <massimiliano.culpo@gmail.com>
2022-05-05 13:30:45 +02:00
Jennifer Green
fd6d226524
git: adding subtree support, post-install step, reordered deps (#30400) 2022-05-05 11:08:51 +02:00
Adam J. Stewart
cef9245ee1
LAPACK: add API compatibility versions (#29828) 2022-05-05 10:38:20 +02:00
dlkuehn
24fecdc738
rnaz: add version 2.1.1 and git repository to newest version. (#30349)
Co-authored-by: David Kuehn <las_dkuehn@iastate.edu>
Co-authored-by: Massimiliano Culpo <massimiliano.culpo@gmail.com>
2022-05-05 10:32:41 +02:00
snehring
4a228055e2
trimmomatic: adding more flexible java dep (#30488) 2022-05-05 10:21:20 +02:00
Wouter Deconinck
17ede26cea
flatbufffers: patches are in v2.0.0 (#30492) 2022-05-05 10:14:10 +02:00
SXS Bot
8bcccbeac7
spectre: add v2022.05.05 (#30493)
Co-authored-by: sxs-bot <sxs-bot@users.noreply.github.com>
2022-05-05 09:49:25 +02:00
Seth R. Johnson
a5d06325e7
qt: fix ~opengl and use_spack_dep (#30487) 2022-05-04 22:41:37 -04:00
Dan Bonachea
9bb23a7f46
UPC++: minor packaging improvements (#30482)
* upcxx: Add `spack external find` support

* upcxx: Minor tweaks to Shasta support
2022-05-04 15:27:21 -07:00