Commit Graph

38656 Commits

Author SHA1 Message Date
Wouter Deconinck
b95936f752
zabbix: add v5.0.44, v6.0.34, v7.0.4 (fix CVEs) (#47001)
* zabbix: add v5.0.44, v6.0.34, v7.0.4 (fix CVEs)

* [@spackbot] updating style on behalf of wdconinc

* zabbix: use f-string

* zabbix: fix f-string quoting

* zabbix: use mysql-client

* @wdconic, this fixes the mysql client virtual for me

---------

Co-authored-by: wdconinc <wdconinc@users.noreply.github.com>
Co-authored-by: Bernhard Kaindl <bernhardkaindl7@gmail.com>
2024-11-04 07:20:09 -06:00
Harmen Stoppels
8d0856d1cc
packaging_guide.rst: explain forward and backward compat before the less common cases (#47402)
The idea is to go from most to least used: backward compat -> forward compat -> pinning on major or major.minor version -> pinning specific, concrete versions.

Further, the following

```python
   # backward compatibility with Python
   depends_on("python@3.8:")
   depends_on("python@3.9:", when="@1.2:")
   depends_on("python@3.10:", when="@1.4:")

   # forward compatibility with Python
   depends_on("python@:3.12", when="@:1.10")
   depends_on("python@:3.13", when="@:1.12")
   depends_on("python@:3.14")
```

is better than disjoint when ranges causing repetition of the rules on dependencies, and requiring frequent editing of existing lines after new releases are done:

```python
   depends_on("python@3.8:3.12", when="@:1.1")
   depends_on("python@3.9:3.12", when="@1.2:1.3")
   depends_on("python@3.10:3.12", when="@1.4:1.10")
   depends_on("python@3.10:3.13", when="@1.11:1.12")
   depends_on("python@3.10:3.14", when="@1.13:")
2024-11-04 13:52:05 +01:00
Teague Sterling
10f7014add
vep-cache: new package (#44523)
* py-uvloop: add v3.8.14, v3.9.15, v3.10.3 and dependencies

* rollback

* vep: add v110,v111,v112

* vep-cache: add v110,v111,v112

* Cleanup

* Reorganizigng

Signed-off-by: Teague Sterling <teaguesterling@gmail.com>

* Update package.py

* Update package.py

* [@spackbot] updating style on behalf of teaguesterling

* Update package.py

* Update package.py

* Update package.py

* [@spackbot] updating style on behalf of teaguesterling

* Update package.py

* [@spackbot] updating style on behalf of teaguesterling

* Fix scoping and syntax issues

Signed-off-by: Teague Sterling <teaguesterling@gmail.com>

* fix styles

Signed-off-by: Teague Sterling <teaguesterling@gmail.com>

* fix variants

* fixing up variant issues and cleaning up resource code

Signed-off-by: Teague Sterling <teaguesterling@gmail.com>

* fixing unused imports

Signed-off-by: Teague Sterling <teaguesterling@gmail.com>

* Apply suggestions from code review

Co-authored-by: Arne Becker <101113822+EbiArnie@users.noreply.github.com>

* fixing vep dependencies

Signed-off-by: Teague Sterling <teaguesterling@gmail.com>

* Fixing resources

Signed-off-by: Teague Sterling <teaguesterling@gmail.com>

* Fixing issue where resources are not downloaded

Signed-off-by: Teague Sterling <teaguesterling@gmail.com>

* vep-cache fixing downloads

Signed-off-by: Teague Sterling <teaguesterling@gmail.com>

* defaulting to using VEP installer

Signed-off-by: Teague Sterling <teaguesterling@gmail.com>

* Removing resource-based cache installation and simplifying package. Resources without checksums doesn't work (anymore?) and calculating them with be difficult

Signed-off-by: Teague Sterling <teaguesterling@gmail.com>

---------

Signed-off-by: Teague Sterling <teaguesterling@gmail.com>
Co-authored-by: Arne Becker <101113822+EbiArnie@users.noreply.github.com>
2024-11-04 11:37:21 +00:00
Harmen Stoppels
c9ed91758d
tcsh: add missing libxcrypt dependency (#47398) 2024-11-04 03:42:34 -07:00
Harmen Stoppels
2c1d74db9b
krb5: disable missing keyutils dependency (#47397) 2024-11-04 03:20:33 -07:00
Harmen Stoppels
5b93466340
libssh2: fix crypto (#47393) 2024-11-04 02:48:35 -07:00
Martin Lang
1ee344c75c
bigdft-futile: fix compilation for @1.9.5~mpi (#47292)
When compiled without MPI support, a fake mpi header is autogenerated during configure/build. The header is missing one symbol in version 1.9.5. The problem has since been fixed upstream.

A simular problem does also occur for 1.9.4. Unfortunately, the patch does not work for 1.9.4 and I also don't know if further fixes would be required for 1.9.4. Therefore, only the newest version 1.9.5 is patched.
2024-11-04 10:47:54 +01:00
afzpatel
754011643c
rocal and rocm-openmp-extras: fix build failures (#47314) 2024-11-04 10:41:07 +01:00
Cédric Chevalier
2148292bdb
kokkos and kokkos-kernels: use new urls for v4.4 and above (#47330) 2024-11-04 10:39:16 +01:00
Harmen Stoppels
cf3576a9bb
suite-sparse: fix missing rpaths for dependencies (#47394) 2024-11-04 02:38:16 -07:00
Martin Lang
a86f164835
nlopt: new version 2.8.0 (#47289) 2024-11-04 10:35:11 +01:00
Martin Lang
2782ae6d7e
libpspio: new version 0.4.1 (#47287) 2024-11-04 10:34:22 +01:00
Wouter Deconinck
b1fd6dbb6d
libxml2: add v2.11.9, v2.12.9, v2.13.4 (#47297)
Co-authored-by: wdconinc <wdconinc@users.noreply.github.com>
2024-11-04 10:32:34 +01:00
Andrey Prokopenko
18936771ff
arborx: remove Trilinos dependency for @1.6: (#47305) 2024-11-04 10:29:32 +01:00
Brian Spilner
9a94ea7dfe
icon: add a maintainer (#47323) 2024-11-04 10:26:28 +01:00
Larry Knox
a93bd6cee4
hdf5: add develop-2.0 (#47299)
Update HDF5 version for develop branch to develop-2.0 to match the new
version in the develop branch.

Remove develop-1.16 as it has been decided to make next release HDF5 2.0.0.
2024-11-04 10:21:17 +01:00
Paul R. C. Kent
4c247e206c
llvm: add v19.1.3 (#47325) 2024-11-04 10:18:24 +01:00
Weiqun Zhang
fcdaccfeb6
amrex: add v24.11 (#47371) 2024-11-04 10:06:49 +01:00
Wouter Deconinck
2fc056e27c
py-flask-compress: add v1.14 (#47373) 2024-11-04 10:02:15 +01:00
Wouter Deconinck
417c48b07a
py-flask-cors: add v4.0.0 (#47374) 2024-11-04 10:01:36 +01:00
Christophe Prud'homme
f05033b0d2
cpr: add +pic and +shared variants (#47281) 2024-11-04 10:00:26 +01:00
Cameron Smith
d63f06e4b7
pumi: add version 2.2.9 (#47380) 2024-11-04 09:58:40 +01:00
Wouter Deconinck
8296aaf175
minizip: add v1.3.1 (#47379) 2024-11-04 09:57:40 +01:00
Wouter Deconinck
86ebcabd46
cups: add v2.4.11 (#47390) 2024-11-04 09:55:33 +01:00
Wouter Deconinck
87329639f2
elasticsearch, kibana, logstash: add v8.15.2 (#46873) 2024-11-04 09:50:41 +01:00
Harmen Stoppels
0acd6ae7b2
lua-luaposix: add missing libxcrypt dependency (#47395) 2024-11-04 01:47:47 -07:00
Massimiliano Culpo
395c911689
Specs: propagated variants affect == equality (#47376)
This PR changes the semantic of == for spec so that:

hdf5++mpi == hdf5+mpi

won't hold true anymore. It also changes the constrain semantic, so that a
non-propagating variant always override a propagating variant. This means:

(hdf5++mpi).constrain(hdf5+mpi) -> hdf5+mpi

Before we had a very weird semantic, that was supposed to be tested by unit-tests:

(libelf++debug).constrain(libelf+debug+foo) -> libelf++debug++foo

This semantic has been dropped, as it was never really tested due to the == bug.
2024-11-03 22:35:16 -08:00
Wouter Deconinck
2664303d7a
pythia8: add v8.312 (#47389)
* pythia8: add v8.312

* pythia8: update homepage url
2024-11-03 23:48:34 +01:00
Wouter Deconinck
ff9568fa2f
sherpa: add v3.0.1 (#47388)
* sherpa: add v3.0.1

* sherpa: no depends_on py-setuptools
2024-11-03 15:32:35 -07:00
eugeneswalker
632c009569
e4s ci stacks: reduce package prefs (#47381) 2024-11-03 00:18:13 +01:00
Paul Gessinger
55918c31d2
root: require +opengl when +aqua is on (#47349)
According to https://github.com/root-project/root/issues/7160, if
`-Dcocoa=ON` build must also be configured with `-Dopengl=ON`, since
otherwise the build encounters missing includes. This is/was a silent
failure in ROOT CMake, but I believe has been made an explicit failure
some time this year.
2024-11-02 11:13:37 +01:00
Tamara Dahlgren
b8461f3d2d
Remove ignored config:install_missing_compilers from unit tests (#47357) 2024-11-02 09:36:05 +01:00
Massimiliano Culpo
133895e785
Rework the schema for reusing environments (#47364)
Currently, the schema reads:

  from:
    - type:
        environment: path_or_name

but this can't be extended easily to other types, e.g. to buildcaches,
without duplicating the extension keys. Use instead:

  from:
    - type: environment
      path: path_or_name
2024-11-02 09:03:42 +01:00
dependabot[bot]
19e3ab83cf
build(deps): bump python-levenshtein in /lib/spack/docs (#47372)
Bumps [python-levenshtein](https://github.com/rapidfuzz/python-Levenshtein) from 0.26.0 to 0.26.1.
- [Release notes](https://github.com/rapidfuzz/python-Levenshtein/releases)
- [Changelog](https://github.com/rapidfuzz/python-Levenshtein/blob/main/HISTORY.md)
- [Commits](https://github.com/rapidfuzz/python-Levenshtein/compare/v0.26.0...v0.26.1)

---
updated-dependencies:
- dependency-name: python-levenshtein
  dependency-type: direct:production
  update-type: version-update:semver-patch
...

Signed-off-by: dependabot[bot] <support@github.com>
Co-authored-by: dependabot[bot] <49699333+dependabot[bot]@users.noreply.github.com>
2024-11-01 23:55:18 +00:00
Greg Becker
e42a4a8bac
parse_specs: unify specs based on concretizer:unify (#44843)
Currently, the `concretizer:unify:` config option only affects environments.

With this PR, it now affects any group of specs given to a command using the `parse_specs(*, concretize=True)` interface.

- [x] implementation in `parse_specs`
- [x] tests
- [x] ensure all commands that accept multiple specs and concretize use `parse_specs` interface

---------

Co-authored-by: Todd Gamblin <tgamblin@llnl.gov>
Signed-off-by: Todd Gamblin <tgamblin@llnl.gov>
2024-11-01 23:49:26 +00:00
kwryankrattiger
1462c35761
Ci generate on change (#47318)
* don't concretize in CI if changed packages are not in stacks

Signed-off-by: Todd Gamblin <tgamblin@llnl.gov>

* Generate noop job when no specs to rebuild due to untouched pruning

* Add test to verify skipping generate creates a noop job

* Changed debug for early exit

---------

Signed-off-by: Todd Gamblin <tgamblin@llnl.gov>
Co-authored-by: Todd Gamblin <tgamblin@llnl.gov>
2024-11-01 22:07:23 +00:00
Massimiliano Culpo
0cf8cb70f4
Fix pickle round-trip of specs propagating variants (#47351)
This changes `Spec` serialization to include information about propagation for abstract specs.
This was previously not included in the JSON representation for abstract specs, and couldn't be
stored.

Now, there is a separate `propagate` dictionary alongside the `parameters` dictionary. This isn't
beautiful, but when we bump the spec version for Spack `v0.24`, we can clean up this and other
aspects of the schema.
2024-11-01 13:43:16 -07:00
Marc T. Henry de Frahan
7b2450c22a
Add openfast version 3.5.4 (#47369)
* Add openfast version 3.5.4

* remove commits
2024-11-01 13:53:59 -06:00
Paul R. C. Kent
8f09f523cc
cp2k: protect 2024.3 against newer libxc (#47363)
* cp2k: protect against newer libxc

* Compat bound for libxc
2024-11-01 11:40:10 -06:00
Stephen Nicholas Swatman
24d3ed8c18
geant4: make downloading data dependency optional (#47298)
* geant4: make downloading data dependency optional

This PR makes downloading the data repository of the Geant4 spec
optional by adding a sticky, default-enabled variant which controls the
dependency on `geant4-data`. This should not change the default
behaviour, but should allow users to choose whether or not they want the
data directory.

* Add comment

* Update env variable

* Generic docs

* Buildable false
2024-11-01 15:41:34 +00:00
Kenneth Moreland
492c52089f
adios2: fix mgard variant (#47223)
Co-authored-by: Bernhard Kaindl <bernhardkaindl7@gmail.com>
2024-11-01 14:18:13 +01:00
dependabot[bot]
5df7dc88fc
build(deps): bump docutils from 0.20.1 to 0.21.2 in /lib/spack/docs (#45592)
Bumps [docutils](https://docutils.sourceforge.io) from 0.20.1 to 0.21.2.

---
updated-dependencies:
- dependency-name: docutils
  dependency-type: direct:production
  update-type: version-update:semver-minor
...

Signed-off-by: dependabot[bot] <support@github.com>
Co-authored-by: dependabot[bot] <49699333+dependabot[bot]@users.noreply.github.com>
2024-11-01 06:23:10 -05:00
Matt Thompson
4a75c3c87a
mapl: add 2.50.2, 2.47.1 tweaks (#47324) 2024-11-01 06:30:00 +01:00
Eric Müller
35aa02771a
verilator: add 5.028, fix builds when using gcc on newer versions (#47168) 2024-11-01 05:26:55 +01:00
G-Ragghianti
b38a29f4df
New versions for slate, lapackpp, and blaspp (#47334) 2024-11-01 04:59:30 +01:00
joscot-linaro
9a25a58219
linaro-forge: added 24.0.6 version (#47348) 2024-11-01 04:56:02 +01:00
Paul R. C. Kent
c0c9743300
py-ase: add v3.23.0 (#47337) 2024-11-01 04:38:40 +01:00
Adam J. Stewart
a69af3c71f
py-rasterio: add v1.4.2 (#47344) 2024-11-01 03:34:09 +01:00
Julien Cortial
cb92d70d6d
mmg: add v5.8.0 (#47356) 2024-11-01 03:29:54 +01:00
Vicente Bolea
76ed4578e7
adios2: add v2.10.2 release and fix build of older versions (#47235)
Co-authored-by: Bernhard Kaindl <bernhardkaindl7@gmail.com>
2024-11-01 02:21:25 +01:00