Commit Graph

8 Commits

Author SHA1 Message Date
Glenn Johnson
7da405e630 Add validator for bioconductor packages
This commit adds a validator function to make sure the versions of R and
bioconductor are in sync.
2016-06-16 23:08:55 -05:00
Glenn Johnson
7213b12324 Tweak how R packages are built.
Add bzip2 as a dependency to base R.

Switch from installing the R packages from tar files to installing from
the extracted directory. This is more in line with a standard install
and also allows installing from VCS.

Use the Bioconductor version for BiocGenerics and future Bioconductor
packages. Suffix the package with 'bioc-$version' to indicate which
Bioconductor release the package is a part of. This is actually more
important than the actual version attached to individual packages
although those are subject to change within the Bioconductor branch.
2016-06-16 23:08:55 -05:00
Glenn Johnson
0e64c25ffc Fix flake8 errors
Use Bioconductor provided Short URL for homepage in BiocGenerics.
Wrap description text for utf variant in pcre.
2016-06-16 23:08:54 -05:00
Glenn Johnson
37dc13edaf Update version of BiocGenerics
The BioConductor repositories only keep the most recent version so this
has to be bumped.
2016-06-16 23:08:54 -05:00
Glenn Johnson
cb3505769b Clean up R extensions
Run the existing R extension packages through autopep8 to clean up.
2016-06-16 23:07:13 -05:00
Todd Gamblin
e7ced54369 Correct LLNL LGPL license template for clarity. 2016-05-11 21:22:25 -07:00
Glenn Johnson
2b7b7f6d97 Reformat description text. 2016-04-24 18:11:18 -05:00
Glenn Johnson
8a7f34665b Make sure base bioconductor package can be installed. 2016-04-06 23:05:49 -05:00