Commit Graph

36283 Commits

Author SHA1 Message Date
Kevin Huck
d1a20908b8
ZeroSum: add new package (#44228) 2024-05-18 09:23:45 +02:00
Derek Ryan Strong
dd781f7368
perl: add v5.36.3, v5.38.2; deprecate unsafe versions (#44186) 2024-05-18 09:21:03 +02:00
dmagdavector
9bcc43c4c1
protobuf: update hash for patch needed when="@3.4:3.21" (#44210)
* protobuf: update hash for patch needed when="@3.4:3.21"

* Update var/spack/repos/builtin/packages/protobuf/package.py

Co-authored-by: Wouter Deconinck <wdconinc@gmail.com>

* Update var/spack/repos/builtin/packages/protobuf/package.py

Co-authored-by: Wouter Deconinck <wdconinc@gmail.com>

---------

Co-authored-by: Wouter Deconinck <wdconinc@gmail.com>
2024-05-17 17:50:29 -06:00
Todd Gamblin
77c83af17d
docs: remove warning about repositories and package extension (#44247)
Local package repositories are very well supported and we test them extensively, so this
warning from 8 years ago can be removed from the docs.
2024-05-17 22:03:57 +00:00
Michael Kuhn
574bd2db99
netlib-scalapack: fix build with gcc@14 (#44120) 2024-05-17 22:38:46 +02:00
James Taliaferro
a76f37da96
kakoune: add v2024.05.09 (#44124) 2024-05-17 22:36:58 +02:00
Adam J. Stewart
9e75f3ec0a
GDAL: add v3.9.0 (#44128) 2024-05-17 22:35:33 +02:00
Derek Ryan Strong
4d42d45897
Add latest Python versions (#44130) 2024-05-17 22:35:06 +02:00
SXS Bot
a4b4bfda73
spectre: add v2024.05.11 (#44139)
Co-authored-by: sxs-bot <sxs-bot@users.noreply.github.com>
2024-05-17 22:28:25 +02:00
Michael Kuhn
1bcdd3a57e
py-cython: add 3.0.10 (#44140) 2024-05-17 22:27:42 +02:00
Stephen Sachs
297a3a1bc9
Add mpas-model and mpich to pcluster neoverse stack (#44151)
Should build now since https://github.com/spack/spack/pull/43547 has been merged.
2024-05-17 22:00:17 +02:00
Adam J. Stewart
8d01e8c978
JAX: add v0.4.28 (#44112) 2024-05-17 21:58:44 +02:00
Wouter Deconinck
6be28aa303
pythia8: patch latest 8.311 for upstream bug (#43803)
* pythia8: prefer 8.310

* [@spackbot] updating style on behalf of wdconinc

* pythia8: filter_file to remove sed n

* Revert "[@spackbot] updating style on behalf of wdconinc"

This reverts commit e2a3decaffbd3f464d1bd992025e1812df49f088.

* Revert "pythia8: prefer 8.310"

This reverts commit 568cb056b87129085e245d9dbef1732ee1c6c0aa.

* [@spackbot] updating style on behalf of wdconinc

* pythia8: comment for fix

* pythia8: fix style

* pythia8: filter_file with raw string because of escaped pipe

---------

Co-authored-by: wdconinc <wdconinc@users.noreply.github.com>
2024-05-17 21:31:05 +02:00
Jon Rood
5e38310515
nalu-wind: fix trilinos rocm dependency (#44233) 2024-05-17 13:00:24 -06:00
wspear
ddfed65485
tau: fix lib/include paths with oneapi (#44170) 2024-05-17 18:55:27 +02:00
dependabot[bot]
2a16d8bfa8
build(deps): bump codecov/codecov-action from 4.3.1 to 4.4.0 (#44195)
Bumps [codecov/codecov-action](https://github.com/codecov/codecov-action) from 4.3.1 to 4.4.0.
- [Release notes](https://github.com/codecov/codecov-action/releases)
- [Changelog](https://github.com/codecov/codecov-action/blob/main/CHANGELOG.md)
- [Commits](5ecb98a3c6...6d798873df)

---
updated-dependencies:
- dependency-name: codecov/codecov-action
  dependency-type: direct:production
  update-type: version-update:semver-minor
...

Signed-off-by: dependabot[bot] <support@github.com>
Co-authored-by: dependabot[bot] <49699333+dependabot[bot]@users.noreply.github.com>
2024-05-17 18:46:17 +02:00
Jonathon Anderson
6a40a50a29
hpcviewer: Update URLs to use GitLab release assets (#44129) 2024-05-17 18:43:13 +02:00
Carlos Bederián
b2924f68c0
blis: add v1.0 (#44199) 2024-05-17 18:39:42 +02:00
Rocco Meli
41ffe36636
spglib: add v2.4.0 (#44202) 2024-05-17 18:33:40 +02:00
Chris Marsh
24edc72252
docs: show phase signature for builders (#44067) 2024-05-17 18:16:31 +02:00
Raffaele Solcà
83b38a26a0
New versions nvpl-blas and nvpl-lapack (#44244) 2024-05-17 17:46:25 +02:00
Nathalie Furmento
914d785e3b
starpu: add v1.4.6 (#44203) 2024-05-17 08:17:01 -06:00
Garth N. Wells
f99f642fa8
fenicsx: remove deprecated versions (#44223) 2024-05-17 07:35:21 -06:00
Seth R. Johnson
e0bf3667e3
cli11: new version and enable library (#44204) 2024-05-17 15:08:28 +02:00
Andrew-Dunning-NNL
a24ca50fed
Fix broken link in docs (#44217) 2024-05-17 12:58:11 +00:00
Fabien Bruneval
51e9f37252
MOLGW: add v3.3 (#44241)
Co-authored-by: Fabien Bruneval <fabien.bruneval@.cea.fr>
2024-05-17 06:56:05 -06:00
Rémi Lacroix
453900c884
libxc: Fix compilation after distribution changes. (#44206)
The release tarballs are not available anymore which means autoconf, automake and libtool are always needed.

The NVHPC specific patches don't make sense anymore being that the patched files are not distributed in the new tar files.
2024-05-17 14:52:03 +02:00
Alberto Invernizzi
4696459d2d
libcatalyst: add missing python dependencies (#44224) 2024-05-17 14:45:26 +02:00
Fabien Bruneval
ad1e3231e5
libcint: add v6.1.2, v5.5.0 (#44239)
Co-authored-by: Fabien Bruneval <fabien.bruneval@.cea.fr>
2024-05-17 05:45:26 -06:00
Richard Berger
2ef7eb1826
exodusii: only use MPI fortran compiler if +fortran (#44211) 2024-05-17 13:01:09 +02:00
Dom Heinzeller
fe86019f9a
ecflow: versions up to 5.11.4 require boost 1.84 or earlier (#44181) 2024-05-17 12:53:48 +02:00
Harmen Stoppels
9dbb18219f
build_environment.py: deal with rpathing identical packages (#44219)
When multiple gcc-runtime packages exist in the same link sub-dag, only rpath
the latest.
2024-05-17 12:29:56 +02:00
Mikael Simberg
451a977de0
hpx: change default of max_cpu_count variant to auto (#44220) 2024-05-17 11:54:48 +02:00
Jack S. Hale
e604929a4c
FEniCS: add more maintainers (#44240) 2024-05-17 03:03:21 -06:00
dependabot[bot]
9d591f9f7c
build(deps): bump actions/checkout from 4.1.5 to 4.1.6 (#44234)
Bumps [actions/checkout](https://github.com/actions/checkout) from 4.1.5 to 4.1.6.
- [Release notes](https://github.com/actions/checkout/releases)
- [Changelog](https://github.com/actions/checkout/blob/main/CHANGELOG.md)
- [Commits](44c2b7a8a4...a5ac7e51b4)

---
updated-dependencies:
- dependency-name: actions/checkout
  dependency-type: direct:production
  update-type: version-update:semver-patch
...

Signed-off-by: dependabot[bot] <support@github.com>
Co-authored-by: dependabot[bot] <49699333+dependabot[bot]@users.noreply.github.com>
2024-05-17 10:57:08 +02:00
Matt Thompson
f8ad915100
esmf: add v8.6.1 (#44229) 2024-05-17 10:49:47 +02:00
Garth N. Wells
cbbabe6920
fenics-dolfinx: add spdlog dependency (#44237) 2024-05-17 10:48:55 +02:00
John W. Parent
81fe460194
Gitlab CI: Windows Configs (#43967)
Add support for Gitlab CI on Windows

This PR adds the config changes required to configure and execute
Gitlab pipelines running Windows builds on Windows runners using
the existing Gitlab CI infrastructure (and newly added Windows 
infrastructure).

* Adds support for generating child pipelines dispatched to Windows runners
* Refactors the relevant pre-scripts, scripts, and post scripts to be compatible with Windows
* Adds Windows config section describing Windows jobs
* Adds VTK as Windows build stack (to be expanded later)
* Modifies proj to build on Windows
* Refactors Windows rpath symlinking to avoid system libs and externals

---------

Co-authored-by: Ryan Krattiger <ryan.krattiger@kitware.com>
Co-authored-by: Mike VanDenburgh <michael.vandenburgh@kitware.com>
Co-authored-by: Todd Gamblin <tgamblin@llnl.gov>
Co-authored-by: Scott Wittenburg <scott.wittenburg@kitware.com>
2024-05-16 17:00:02 -06:00
Paul Kuberry
b894f996c0
trilinos: catch kokkos inconsistency with trilinos (#44209)
* trilinos: catch kokkos inconsistency with trilinos

* trilinos: update kokkos version range
2024-05-16 13:36:11 -06:00
John W. Parent
1ce09847d9
Prefer llnl.util.symlink.readlink to os.readlink (#44126)
Symlinks on Windows can use longpath prefixes (\\?\); these are fine
in the context of win32 API interactions but break numerous facets of
Spack behavior that rely on string parsing/matching (archiving,
binary distributions, tarball extraction, view regen, etc).

Spack's internal readlink method (llnl.util.symlink.readlink)
gracefully handles this by removing the prefix and otherwise behaving
exactly as os.readlink does, so we should prefer that in all cases.
2024-05-16 10:56:04 -07:00
Thomas Madlener
722d401394
gaudi: Don't apply the patch if it has already landed upstream (#44180) 2024-05-16 17:15:39 +02:00
Howard Pritchard
e6f04d5ef9
py-matplotlib: qualify when to do a post install (#44191)
* py-matplotlib: qualify when to do a post install

Older versions of py-matplotlib don't seem to have some of the
files that the post install step is trying to install.
Looks like the files first appeared in 3.6.0 and later.

Signed-off-by: Howard Pritchard <hppritcha@gmail.com>

* Change install paths for older matplotlib

---------

Signed-off-by: Howard Pritchard <hppritcha@gmail.com>
Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>
2024-05-16 16:18:44 +02:00
Mosè Giordano
b8e3ecbf00
suite-sparse: improve setting of the libs property (#44214)
on some distros it is in lib64/
2024-05-16 11:07:18 +02:00
Todd Gamblin
d189387c24
bugfix: add arg to write_line_break() in spack_yaml (#42727)
`ruamel`'s `Emitter.write_line_break()` method takes an extra argument that we forgot to
implement in our custom emitter.
2024-05-15 19:25:06 -07:00
Andrew Lister
9e96ddc5ae
CoinHSL: Support the Meson build system and add new release (#43610)
* Add maintainer and fix linting
* allow for fewer deps in archive
* use meson for archive packages
* Fix version spec and f-string
* fix blas dependency links
* Add new release to spack
* Fix checksums for latest release
2024-05-15 16:48:23 -06:00
dmagdavector
543bd189af
iperf3: updated versions from 3.6 to 3.16 (#44152)
* Update version of iperf3 from 3.6 to 3.16

Spack currently only explicitly has version 3.6 of the iPerf3 package
(out of ESnet / LBNL). This makes the default the latest version of 3.16,
and adds some other versions (found in some Linux distros, for possible
compatibility purposes).

* iperf3: update to 3.17; update 3.6 hash for new url

* protobuf: update hash for patch needed when="@3.4:3.21"

* Revert "protobuf: update hash for patch needed when="@3.4:3.21""

This reverts commit 4d168d0b27.
2024-05-15 15:48:15 -06:00
John W. Parent
43291aa723
Cdash reporting timeout (#44213)
* Add timeout to cdash reporter PUT request

Add cdash timeout everywhere
Correct mock responder api

* Style

* brief doc
2024-05-15 15:41:51 -04:00
Alec Scott
d0589285f7
unmaintained pkgs: bump versions 2024-05-10 (#44131)
* unmaintained pkgs: bump versions 2024-05-10

* openblas: fix satisfies syntax

* pixman: add autotools dependencies

* [@spackbot] updating style on behalf of alecbcs

* pixman: revert

* chapel: revert changes in favor of other PR

* openblas: revert due to failing tests

* Address review feedback for flint, biobam2, and pango

* pango: add version comment about v2.0

* numactl: revert changes due to ppc4le bug

* flint: remote duplicate configure arg

Co-authored-by: Wouter Deconinck <wdconinc@gmail.com>

* openvkl, rkcommon: remove commented maintainers template

* flint: fix style

---------

Co-authored-by: alecbcs <alecbcs@users.noreply.github.com>
Co-authored-by: Wouter Deconinck <wdconinc@gmail.com>
2024-05-15 11:04:52 -07:00
afzpatel
d079aaa083
enable tensorflow-2.14 and 2.16 for spack built ROCm (#44095)
* initial commit to enable tensorflow-2.14 for spack built ROCm

* fix style errors

* modify hipcc patch

* updates for rocm 6.1

* updates for tf-rocm-enhanced 2.16

* fix styling

* fix styling

* add patch for 2.16

* add patch for 2.16

* Update var/spack/repos/builtin/packages/py-tensorflow/package.py

Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>

* update rocm enhanced version names

* changes for rocm-enhanced version name change

* fix styling

---------

Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>
2024-05-15 17:06:35 +02:00
Paolo
6c65977e0d
Fix gromacs installation with SVE. Issue 44062 (#44183)
* Fix gromacs installation with SVE. Issue 44062

* [@spackbot] updating style on behalf of paolotricerri

* Remove `neoverse_n2` target

We have removed the neoverse_n2 target as its detection is more involved
compared to neoverse_v*.
2024-05-15 07:22:47 -06:00