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Author SHA1 Message Date
Piotr Luszczek
d57bcc0b85 cpio: reuse patch for %gcc10: for %clang as well (#27589) 
and replace patch download with simple filter_file() to fix the duplicate definition.

Co-authored-by: Bernhard Kaindl <43588962+bernhardkaindl@users.noreply.github.com>
 2021-11-30 23:09:00 +01:00
Sebastian Schmitt
c96a6f990e Bump Brian2 (#27700) 
* Bump Brian2

* Remove doc variant; the documentation is not build anyways
 2021-11-30 11:32:04 -07:00
Marco De La Pierre
88cf4ce865 updated recipe for quantum-espresso 6.8 (#27607) 2021-11-30 10:05:53 -08:00
Manuela Kuhn
5e193618cb gtk-doc: fix source url and add 1.33.2 (#27719) 2021-11-30 09:29:06 -07:00
Davide Mancusi
0e83c0e792 gtkplus: fix generation of configure_args (#27718) 2021-11-30 17:26:39 +01:00
Massimiliano Culpo
645a7dc14c spack audit: fix API calls (#27713) 
This broke in #24858
 2021-11-30 14:59:55 +01:00
Adam J. Stewart
5044df88ab Add citation information to GitHub (#27518) 2021-11-30 01:37:50 -07:00
Manuela Kuhn
ab2bc933b8 py-idna: add 3.3 (#27708) 2021-11-29 21:28:57 -07:00
Valentin Volkl
b13778c2c6 py-iminuit: add new versions 2.8.4 (#27680) 
* py-iminuit: add new versions 2.8.4

* py-iminuit: update python dependency

* py-iminuit: fix typo

* flake8
 2021-11-29 20:19:52 -07:00
Manuela Kuhn
54df6d0a56 py-setuptools: add 59.4.0 (#27692) 2021-11-29 19:52:50 -07:00
Manuela Kuhn
44746dfbd6 r-tidyverse: add 1.3.1 (#27291) 2021-11-29 18:24:44 -06:00
Harmen Stoppels
a86d574208 dsfmt package: fix shared libs (#27628) 
Also:

* Remove 2.2.3 (doesn't build shared libs)
* Add versions 2.2.4 and 2.2.5
 2021-11-29 15:57:32 -08:00
Satish Balay
cb71308d22 petsc: archive configure.log make.log from the build (#27677) 
Also enable verbose build
 2021-11-29 16:10:50 -07:00
Ben Darwin
02b4a65086 py-intensity-normalization: add package (at version 2.1.1) (#27593) 
* py-scikit-fuzzy: new package (at version 0.4.2)

* py-intensity-normalization: new package (at version 2.1.1)
 2021-11-29 15:33:16 -06:00
Manuela Kuhn
838294b10d py-gevent: add 21.8.0 (#27699) 2021-11-29 15:29:09 -06:00
Manuela Kuhn
22eebff261 py-pyparsing: add 3.0.6 (#27693) 
* py-pyparsing: add 3.0.6

* Add suggestions
 2021-11-29 14:02:08 -07:00
Manuela Kuhn
a98e8ad4b5 py-packaging: add 21.3 (#27691) 
* py-packaging: add 21.3

* Update var/spack/repos/builtin/packages/py-packaging/package.py

Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>

Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>
 2021-11-29 13:56:09 -07:00
Bernhard Kaindl
2d34082b0c llvm: Fix building llvm@4:9 using %clang@6: and %gcc@10: (#27233) 
Add z3 variant, fix @:9%gcc@9: with glibc2.31, fix no_cyclades range
 2021-11-29 12:48:18 -08:00
Manuela Kuhn
1f1da6806c py-tifffile: add 2021.11.2 (#27695) 2021-11-29 12:52:55 -07:00
Manuela Kuhn
647a26bc9e py-httpretty: add 1.1.4 (#27687) 2021-11-29 11:42:58 -06:00
Manuela Kuhn
561b0ca029 py-zope-interface: add 5.4.0 (#27596) 2021-11-29 11:42:00 -06:00
Manuela Kuhn
3c5295ee8a py-gast: add 0.5.3 (#27686) 2021-11-29 11:40:59 -06:00
Manuela Kuhn
914cf5ff87 py-importlib-metadata: add 4.8.2 (#27690) 2021-11-29 11:40:17 -06:00
Thomas Madlener
ecb588740a Speed up install of environments with dev packages (#27167) 
* only check file modification times once per dev package
 2021-11-29 09:34:23 -08:00
Manuela Kuhn
4858a26400 py-humanize: add 3.12.0 (#27688) 2021-11-29 10:58:09 -06:00
Eric Brugger
995a29d2f3 VisIt: remove upper range restriction on llvm. (#27648) 2021-11-29 17:38:31 +01:00
Adam J. Stewart
fcd5f960f8 py-matplotlib: add v3.5.0 (#27486) 
* py-matplotlib: add v3.5.0

* Remove deprecated versions, update setup.cfg filename

* Add additional dependencies, save config file

* Add patch to fix matplotlibrc
 2021-11-29 17:19:01 +01:00
Howard Pritchard
54d88f1a1c OpenMPI: add version 4.1.2 (#27645) 
Signed-off-by: Howard Pritchard <howardp@lanl.gov>
 2021-11-29 16:45:20 +01:00
Adam J. Stewart
fee8ac9721 py-scipy: add v1.7.3 (#27649) 2021-11-29 16:44:17 +01:00
Manuela Kuhn
1326e9d538 py-greenlet: add v1.1.2 (#27594) 2021-11-29 16:43:38 +01:00
Bernhard Kaindl
bd0960cda8 gpgme: Add 0.16.0 and address test suite issues (#27604) 
A part of the gpgme testsuite by default even runs during normal
make and make install phases, creating a public keyring in ~/.gnupg.
Prevent this and avoid build failures in containers due to another
problem of the test suite and fix a test case of the new 0.16.0 release.
 2021-11-29 16:43:12 +01:00
Ethan Stam
cfd2ea0cff ParaView: Build edition strings should be uppercase (#27534) 2021-11-29 16:38:25 +01:00
Adam J. Stewart
e5e9dc2d92 py-pytorch-lightning: add v1.5.3 (#27650) 2021-11-29 16:31:58 +01:00
Derek Ryan Strong
f8d03b1060 pixz: add v1.0.7 (#27651) 2021-11-29 16:29:10 +01:00
Harmen Stoppels
037ece674b distro: don't use deprecated linux_distribution (#27658) 2021-11-29 16:26:19 +01:00
Nicolas Cornu
87cf38a427 Random123: add v1.14.0 from github (#27660) 2021-11-29 16:13:50 +01:00
Massimiliano Culpo
0d10408a25 bootstrap: restrict patchelf to v0.13.x (#27685) 2021-11-29 15:41:25 +01:00
Bernhard Kaindl
48d98b4c9e podman: new package (with dependencies) (#27603) 
When the uidmap tools are installed on a system, this allows to run
containers as unprivileged user (rootless and daemonless) slimilar
to singularity, but using a familiar CLI: "alias docker=podman"

This is helpful to run e.g. spack builds in containers to reproduce
build failures from CI without requiring a installation of docker.
The required dependencies of podman are added as well.
 2021-11-29 15:39:19 +01:00
Valentin Volkl
64c4fbd220 edm4hep: update hepmc dependency (#27678) 2021-11-29 14:55:07 +01:00
Bernhard Kaindl
af0ba4e3ef gtkplus: fix build of GTK2 versions with gcc-11, skip X tests (#26970) 
Fix to not attempt to patch a nonexisting file for old versions
when building with gcc-11. Skip the build-time tests as all access
the X DISPLAY and open many windows on the screen.
 2021-11-29 14:46:51 +01:00
Harmen Stoppels
5dce4d79bd patchelf: add v0.13.1, v0.14, v0.14.1 (#27681) 2021-11-29 13:46:15 +01:00
Paul Ferrell
c0edb17b93 Handle byte sequences which are not encoded as UTF8 while logging. (#21447) 
Fix builds which produce a lines with non-UTF8 output while logging
The alternative is to read in binary mode, and then decode while
ignoring errors.
 2021-11-29 13:27:02 +01:00
Vanessasaurus
bdde70c9d3 "branch" spelling mistake in libbeato (#27682) 
I was browsing package metadata, as one does on a Sunday, and stumbled across a new kind of version attribute - brancch! I suspect this is supposed to be "branch."
 2021-11-29 13:17:40 +01:00
iarspider
8ff81d4362 Fix py-astroid recipe (#27670) 2021-11-28 11:07:53 -06:00
Mark Grondona
1b71ceb384 add flux-core v0.31.0 and flux-sched v0.20.0 (#27336) 
Update flux-core and flux-sched package.py to include latest releases.

For flux-sched:

 - Add patch to disable false-positive-happy valgrind test
 - pin yaml-cpp to 0.6.3 due to issue described at:
   https://github.com/flux-framework/flux-sched/issues/886
 2021-11-28 02:18:00 +01:00
Joseph Wang
0ab5828d0d gdk-pixbuf: Fix 2.42.2 and add 2.42.6 (#27254) 
Starting with meson 0.60, unknown args produce errors and
the -Dx11 arg is only present in @:2.40
https://gitlab.gnome.org/GNOME/gtk-osx/-/issues/44

Add tiff variant: Default disabled since fails the tests in part.
Only libtiff@:3.9 pass, but these old versions have severe security issues.

Deprecate @:2.41 as they are affected by the high-severity CVE-2021-20240:
https://nvd.nist.gov/vuln/detail/CVE-2021-20240
 2021-11-28 01:30:14 +01:00
iarspider
d5b243de14 py-scipy: update pybind11 versions (#27679) 2021-11-27 16:03:43 -06:00
iarspider
1d8d975721 Apply requested fix from #27643 (#27672) 2021-11-26 16:45:38 -06:00
iarspider
96ce0e393d New version: py-send2trash 1.8.0 (#27583) 2021-11-26 14:35:03 -07:00
Jannis Schönleber
cf3762369c dyninst: use spack libiberty path (#25779) 2021-11-26 15:58:53 -05:00