Commit Graph

21234 Commits

Author SHA1 Message Date
Tamara Dahlgren
84381fbc80 Bugfix: terminate if a spack.yaml include path does not exist (#18074) 2020-09-03 14:37:24 +02:00
t-nojiri
3a562c0cec fermi: added patch to support aarch64 (#18479) 2020-09-03 10:06:15 +02:00
psakievich
7c0b356e79 Add test tolerance variant to nalu-wind pkg (#18455)
* Add test tolerance variant to nalu-wind pkg

* flake8 fixes
2020-09-02 20:31:58 -05:00
Gabriel Rockefeller
ced0a8f068 eospac: add version 6.4.1 (#18476) 2020-09-02 20:28:48 -05:00
Andrew W Elble
879bb063f7 new package: corenlp (#18467)
* new package: corenlp

* import os, not os.path
2020-09-02 20:27:56 -05:00
Robert Blake
638f44d842 CUDA_HOME needs to be set, or CUDA is found based on user's PATH. (#18475) 2020-09-02 19:52:00 -05:00
Harmen Stoppels
6d87cbdb52 Add rocm 3.7.0 libs (#18366)
* Add rocm 3.7.0 libs

* Make 3.7.0-only dependency on numactl explicit

* Add rocm-device-libs dep to rocm-clang-ocl

* Update the cmakelists dir in rocm-debug-agant

* Make rocm-debug-agent work on 3.7.0

* Disable tensile host; following rocm-arch recommendations
2020-09-02 19:50:05 -05:00
Adam J. Stewart
443407cda5 Add new RubyPackage build system base class (#18199)
* Add new RubyPackage build system base class

* Ruby: add spack external find support

* Add build tests for RubyPackage
2020-09-02 16:26:36 -07:00
Chris White
e22a0ca5cf mfem: fix transitive hdf5 static libs (#18457) 2020-09-02 15:06:45 -07:00
Adam J. Stewart
e58db067c3 PythonPackage: update documentation (#18181) 2020-09-02 15:05:10 -07:00
Adam J. Stewart
8eb375bf81 spack test: no gpg signing for git commits (#18454) 2020-09-02 14:48:48 -07:00
Adam J. Stewart
6b20687b26 python: switch to +uuid by default (#18252) 2020-09-02 14:46:58 -07:00
Adam J. Stewart
1992fdf712 Document test dependency type (#18365) 2020-09-02 13:46:52 -07:00
Jose E. Roman
601f97d8a5 New patch release SLEPc 3.13.4 (#18466) 2020-09-02 15:24:07 -05:00
Rémi Lacroix
447ea50bf9 Aria2: Add version 1.35.0. (#18465) 2020-09-02 15:23:40 -05:00
Adam J. Stewart
ba317b01c3 Packages: headers should be lists (#18445) 2020-09-02 13:19:22 -07:00
Nick Booher
0116c44714 ldak: new package at 5.1 (#18431)
* ldak: new package at 5.1

* flake8

* Re-run tests

* Apply suggestions from code review

Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>

Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>
2020-09-02 11:29:40 -05:00
Auriane R
24843844ae Add HPX 1.5.0 release and update the homepage (#18464) 2020-09-02 10:34:05 -05:00
Sinan
e5fdb2a46c new package: py-python-fmask (#18382)
* new package: py-python-fmask

* flake8

* add missing dependency

Co-authored-by: sbulut <sbulut@3vgeomatics.com>
Co-authored-by: Sinan81 <Sinan81@earth>
2020-09-02 10:29:02 -05:00
Sinan
712e7bd2bf new package: py-gitdb (#18386)
* new package: py-gitdb

* Update var/spack/repos/builtin/packages/py-gitdb/package.py

Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>

* Update package.py

Co-authored-by: sbulut <sbulut@3vgeomatics.com>
Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>
2020-09-02 10:28:33 -05:00
Jordan Moxon
aa8e046073 Add blaze versions 3.6-3.8 (#18424) 2020-09-02 10:15:38 -05:00
darmac
f268f65733 Add new package: rasdaemon (#18434) 2020-09-02 10:08:34 -05:00
Gvozden Neskovic
1e05321c8f gromacs: add support for opencl build (#18461)
Co-authored-by: Gvozden Nešković <neskovic@dev06.compeng.uni-frankfurt.de>
2020-09-02 09:07:43 -06:00
Seth R. Johnson
d904c57d2b Flibcpp: update version (#18448)
Update available versions and add Fortran check
2020-09-02 11:07:10 -04:00
Paul
1b78a010d8 Updated Hugo package. (#18443)
* Set GOPATH in build environment to avoid creating files in the user's
default GOPATH (e.g. ~/go).
* Support for external find.
* Added latest releease 0.74.3.
2020-09-02 10:03:56 -05:00
ketsubouchi
1026ace6b6 r-boot: checksum mismatch @1.3-23 (#18458) 2020-09-02 10:00:12 -05:00
Weston Ortiz
bf2ded5269 Add gdb TUI variant (#18459) 2020-09-02 09:59:19 -05:00
Mark Olesen
5c94827201 scotch: update to 6.0.10 (released 31-AUG-2020) (#18462)
- added gitlab location, updated the homepage location

Co-authored-by: Mark Olesen <Mark.Olesen@esi-group.com>
2020-09-02 09:57:48 -05:00
Seth R. Johnson
9e51b8d165 New package: ForTrilinos (#18456)
Remove prior built-in Trilinos subrepository.

Added a Trilinos conflict discovered while documenting ForTrilinos:
```
   ***
   *** ERROR: Setting Trilinos_ENABLE_SEACASExodus=OFF which was 'ON' because SEACASExodus has a required library dependence on disabled TPL Netcdf!
   ***
```
2020-09-02 08:14:20 -04:00
Rui Xue
d9b945f663 Mac OS: support Python >= 3.8 by using fork-based multiprocessing (#18124)
As detailed in https://bugs.python.org/issue33725, starting new
processes with 'fork' on Mac OS is not guaranteed to work in general.
As of Python 3.8 the default process spawning mechanism was changed
to avoid this issue.

Spack depends on the fork-based method to preserve file descriptors
transparently, to preserve global state, and to avoid pickling some
objects. An effort is underway to remove dependence on fork-based
process spawning (see #18205). In the meantime, this allows Spack to
run with Python 3.8 on Mac OS by explicitly choosing to use 'fork'.

Co-authored-by: Peter Josef Scheibel <scheibel1@llnl.gov>
Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>
Co-authored-by: Todd Gamblin <tgamblin@llnl.gov>
2020-09-02 00:15:39 -07:00
Axel Huebl
0740a4ac7e ADIOS: Fix no-MPI Build (#18453)
Do not apply this patch in no-MPI builds. I think this autotools
check logic is generally borked, this will just set it manually to
on/off now.
2020-09-01 18:17:51 -07:00
Adam J. Stewart
17f7b23783 Deprecate spack setup (#18240) 2020-09-01 18:07:48 -07:00
t-nojiri
ae3f3887a6 ccs-qcd: Change compile option for aarch64 (#17516)
* ccs-qcd: Change compile option for aarch64
2020-09-01 18:03:47 -07:00
Patrick Gartung
ae44a8ff64 test/relocate.py: skip tests involving patchelf on macOS (#18451) 2020-09-01 14:49:05 -05:00
Rao Garimella
ea97b37f60 Jali: Fix bugs in CMake section (#18447)
Fix variant name and cmake variable.

Co-authored-by: Rao Garimella <rao@abyzou.lanl.gov>
2020-09-01 15:18:24 -04:00
Jen Herting
e7f1eeb7af Update dependencies: py-torch-geometric (#18265)
* [py-torch-geometric] depends on py-torch-sparse

* [py-torch-geometric] setting TORCH_CUDA_ARCH_LIST

* [py-torch-geometric] added the rest of the dependencies

* [py-torch-geometric] added cuda variant and added more build env vars

* [py-torch-geometric] added variant info for depenedencies

* [py-torch-geometric] flake8

* [py-torch-geometric] add variant description
2020-09-01 13:44:12 -05:00
darmac
f9a330ae99 Add new package: efivar (#18392) 2020-09-01 10:09:59 -05:00
Nikolay Simakov
12078382b6 Added HPC Challenge Benchmark (#18323)
* HPCC Benchmark: added HPC Challenge (HPCC) benchmark

* HPCC Benchmark: modified error message on lack of fftw2 interface in MKL

* hpcc: fixed styling add one more installation example

* hpcc: styling fix

Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>

* hpcc: changed include and lib location setter

Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>

* hpcc: fixed styling add one more installation example

* hpcc: removed readme.md

* hpcc: develop repo now is in github

* hpcc: march arguments are set explicitly in case of intel compilers, added -restrict flag, which needed for older intel compilers (at least <=19.0.5.281)

Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>
2020-09-01 09:59:06 -05:00
ketsubouchi
3a5746c6c7 orbit2: new package at v2.14.19 (#18405) 2020-09-01 13:11:55 +02:00
darmac
3701633937 fuse-overlayfs: added new package at v1.1.2 (#18435) 2020-09-01 08:28:27 +02:00
Joseph Wang
ebeb8fb8df ocaml: allow v4.08 and v4.09 to build with gcc10 (#18254)
fixes #18228.  

This patch doesn't cover all old versions but it allows packages like whizard to build.
2020-09-01 05:53:13 +02:00
Sinan
1c67a304c8 py-tpot: added new package at v0.11.5 (#18385)
Co-authored-by: sbulut <sbulut@3vgeomatics.com>
Co-authored-by: Sinan81 <Sinan81@earth>
Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>
2020-09-01 05:51:23 +02:00
Xavier Delaruelle
efff025787 environment-modules: added v4.5.3 (#18425) 2020-09-01 05:46:13 +02:00
Brian Van Essen
28ef5c0e27 dihydrogen, hydrogen: dependency on CUB is conditional on CUDA version (#18427)
In CUDA 11, CUB is integrated into the CUDA library.
2020-09-01 05:42:21 +02:00
Tim Haines
7926f84022 elfutils: add support for debuginfod (#18227) 2020-09-01 05:35:18 +02:00
Jeffrey Salmond
9b6c2e80fe py-llvmlite: added v0.34 (#18432) 2020-09-01 05:33:27 +02:00
Toyohisa Kameyama
b2d2bb694e openfoam: delete print to screen and updated docstrings/comments (#17985) 2020-09-01 05:31:49 +02:00
darmac
49b47864e9 libpam: added new package at v1.0.9 (#18418) 2020-09-01 05:19:48 +02:00
MichaelLaufer
16e3e28cc8 new package: wrf (#18398)
* wrf: new package

* wrf: fix install dir

* wrf: ndown location

* Add more compiler and nesting options to wrf package

* Fix configure that didn't find pgf90, use tempfile and compile in parallel

* WRF v4.2 with parallel I/O support through pnetcdf

Signed-off-by: michael laufer <michael.laufer@toganetworks.com>

* extend Package, compiler wrapper now used, small fixes

Signed-off-by: michael laufer <michael.laufer@toganetworks.com>

* Update var/spack/repos/builtin/packages/wrf/package.py

fixed typo

Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>

Co-authored-by: Levi Baber <baberlevi@gmail.com>
Co-authored-by: eXact lab <info@exact-lab.it>
Co-authored-by: michael laufer <michael.laufer@toganetworks.com>
Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>
2020-08-31 20:38:36 -05:00
Howard Pritchard
712d80955b OPENMPI: add 4.0.5 (#18332)
Signed-off-by: Howard Pritchard <howardp@lanl.gov>
2020-08-31 20:38:06 -05:00