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11760 Commits

Author SHA1 Message Date
Mosè Giordano
561f6d6c21 swfft: Add patch to make it build (#17196) 2020-06-23 10:17:32 +02:00
Jen Herting
6fdf5913ab py-gsd: new package at v1.9.3 (#17200) 
Co-authored-by: Andrew Elble <aweits@rit.edu>
 2020-06-23 09:49:05 +02:00
Howard Pritchard
07b6834ec5 OpenMPI: added v4.0.4 (#17202) 
Bug fix release:

4.0.4 -- June, 2020
-----------------------
- Fix a memory patcher issue intercepting shmat and shmdt.  This was
  observed on RHEL 8.x ppc64le (see README for more info).
- Fix an illegal access issue caught using gcc's address sanitizer.
  Thanks to  Georg Geiser for reporting.
- Add checks to avoid conflicts with a libevent library shipped with LSF.
- Switch to linking against libevent_core rather than libevent, if present.
- Add improved support for UCX 1.9 and later.
- Fix an ABI compatibility issue with the Fortran 2008 bindings.
  Thanks to Alastair McKinstry for reporting.
- Fix an issue with rpath of /usr/lib64 when building OMPI on
  systems with Lustre.  Thanks to David Shrader for reporting.
- Fix a memory leak occurring with certain MPI RMA operations.
- Fix an issue with ORTE's mapping of MPI processes to resources.
  Thanks to Alex Margolin for reporting and providing a fix.
- Correct a problem with incorrect error codes being returned
  by OMPI MPI_T functions.
- Fix an issue with debugger tools not being able to attach
  to mpirun more than once.  Thanks to Gregory Lee for reporting.
- Fix an issue with the Fortran compiler wrappers when using
  NAG compilers.  Thanks to Peter Brady for reporting.
- Fix an issue with the ORTE ssh based process launcher at scale.
  Thanks to Benjamín Hernández for reporting.
- Address an issue when using shared MPI I/O operations.  OMPIO will
  now successfully return from the file open statement but will
  raise an error if the file system does not supported shared I/O
  operations.  Thanks to Romain Hild for reporting.
- Fix an issue with MPI_WIN_DETACH.  Thanks to Thomas Naughton for reporting.

Signed-off-by: Howard Pritchard <howardp@lanl.gov>
 2020-06-23 09:46:50 +02:00
Adam J. Stewart
f8e3e8289d py-torchvision: added v0.6.1 (#17203) 2020-06-23 09:45:36 +02:00
Wouter Deconinck
0ffbd79bd0 [hepmc3] gcc@9.3.0 patch for @3.1.2:3.2.1, conflicts for earlier @:3.1.1 (#17182) 
See ba38f14d8f, which is included in master and released as of hepmc3@3.2.2
 2020-06-23 09:44:44 +02:00
vvolkl
36e603c7d6 whizard: added zlib as a dependency (#17205) 2020-06-23 08:56:23 +02:00
Tomoki, Karatsu
1d10c6c730 caffe: use MPI compiler when using hdf5+mpi (#17125) 2020-06-23 08:54:54 +02:00
Michael Kuhn
55f26b0ccb lua: fix linking to ncurses (#17206) 
PR #17108 broke the build. Spack's ncurses package does not provide a
libtermcap, so we need to use libtinfow.
 2020-06-23 08:30:45 +02:00
vvolkl
735416dbf4 HEP generator update: evtgen, tauola, photos, pythia8, lhapdf, whizard (#16880) 
* add package evtgen

fix formatting

add evtgen dependencies and update pythia8

fix formatting

* [evtgen] update versions

* [pythia8] add 'without-PACKAGE' args

* fix formatting

* Add LHAPDF

Co-authored-by: iarspider

* Add package whizard

fix formatting

* [pyhtia8, evtgen] add conflict msg re: circular dependencies

* [pyhtia8, evtgen] fix conflicts

* [pyhtia8, evtgen] fix msg string

* Set pythia8 default to ~evtgen
 2020-06-22 13:16:06 -05:00
Jen Herting
985c5c7792 [py-macs2] new version and dependency (#16817) 
* [py-macs2] Combined commit

- Added version 2.1.3.3
- added dependency py-cython

Author: Jen Herting <jen@herting.cc>
Date:   Tue May 26 16:41:28 2020 -0400

[py-macs2] added sha256=

Author: Andrew Elble <aweits@rit.edu>
Date:   Tue Oct 29 10:34:33 2019 -0400

migrated repos

* [py-macs2] fixed copyright

* [py-macs2] py-cython is build dependency
 2020-06-22 13:15:46 -05:00
Joseph Ciurej
42f2c168d2 swig: fix older builds on newer platforms by updating config files (#16854) 
* swig: revise 'autotools' automated 'config.*' update mechanism to support 'config.sub' and adapt 'swig' accordingly
 2020-06-22 10:44:29 -05:00
Brian Van Essen
4e9a98997a Added 8.0 RC to the versions (#17176) 2020-06-22 08:22:14 -05:00
G-Ragghianti
54cfec025f blaspp: moved to new git repo (#17184) 
Extended the list of maintainers
 2020-06-22 14:21:46 +02:00
darmac
a76545b813 dos2unix: add build dependency on gettext (#17191) 2020-06-22 13:37:26 +02:00
Brian Van Essen
0d08e18df5 Minor cleanup for conduit and hydrogen (#17136) 
* Fix how the Conduit detects that the MPI compiler is the same as the
CC compiler and is more careful when it sets the MPI compilers to be
the Cray PE system compilers.

* Remove unnecessary push of the MPI compilers to the C compilers for Hydrogen.
 2020-06-22 09:32:55 +02:00
Wouter Deconinck
3fc963b1f9 delphes: better specify the dependency on root (#17175) 
Compiling delphes with default root cxxstd=11 fails, see e.g. https://sft.its.cern.ch/jira/si/jira.issueviews:issue-html/ROOT-9492/ROOT-9492.html
 2020-06-22 09:31:57 +02:00
iarspider
0b74285a14 py-pyheadtail: added new package at v1.14.1 (#17159) 
Co-authored-by: iarspider <iarpsider@gmail.com>
 2020-06-22 08:52:19 +02:00
Hans Pabst
73b3bbbd22 libxsmm: added v1.16 (#17185) 2020-06-22 08:36:46 +02:00
Christoph Junghans
e91d7988e5 votca-*: added v1.6.1 (#17186) 2020-06-22 08:36:01 +02:00
Michael Kuhn
0cddfb9d8a meson: added v0.54.3 (#17190) 2020-06-22 08:30:17 +02:00
Adam J. Stewart
4bfa844de0 SciPy: add v1.5.0 (#17189) 2020-06-22 08:20:04 +02:00
Adam J. Stewart
c7f6608f5e NumPy: add v1.19.0 (#17183) 2020-06-20 17:46:10 -05:00
Chris White
a20ba315f5 Axom/Conduit: Fix error when fortran is not defined (#17171) 
* Fix error when fortran is not defined

* Guard more ~fortran cases
 2020-06-19 14:31:09 -05:00
G-Ragghianti
844312f213 Updated slate package to use new git repo. Added maintainer. (#17165) 
* Updated slate package to use new git repo.  Added maintainer.
 2020-06-19 11:10:03 -05:00
Alexander Knieps
b73536b4ad Update to swipl package (#17173) 
* Added version 8.2.0, added dependency for documentation build, added variants for documentations

* Renamed variant '+man' to '+html'

Co-authored-by: Alexander Knieps <a.knieps@fz-juelich.de>
 2020-06-19 11:03:25 -05:00
Adam J. Stewart
b80d5e74e5 PyTorch: add v1.5.1 (#17167) 2020-06-18 17:24:38 -05:00
Adam J. Stewart
5a0c5de50b py-pandas: add v1.0.5 (#17161) 2020-06-18 17:24:27 -05:00
Adam J. Stewart
33e6d0f378 py-matplotlib: add v3.2.2 (#17160) 2020-06-18 17:24:14 -05:00
Massimiliano Culpo
6d9f0262de libjpeg-turbo: fixed sha256 (#17154) 2020-06-18 14:44:32 +02:00
lorddavidiii
68c13d76f9 arpack-ng: fix build with gcc@10: (#17131) 2020-06-18 14:43:52 +02:00
darmac
2a13bad8eb atop: fix ld error (#17150) 2020-06-18 14:42:52 +02:00
Sinan
1de20f00b6 arrayfire: added cudnn as a dependency when +cuda (#17146) 
Co-authored-by: Sinan81 <sbulut@3vgeomatics.com>
 2020-06-18 11:20:17 +02:00
Shintaro Iwasaki
910d258706 argobots, bolt: updates to package.py (#17117) 2020-06-18 11:11:59 +02:00
Itaru Kitayama
4fe78bceaa cube and libjpeg-turbo: added cube v4.5 and libjpeg-turbo v2.0.4 (#17132) 2020-06-18 10:40:54 +02:00
Toyohisa Kameyama
58e20430b1 minimap2: fix a typo in the recipe (#17148) 2020-06-18 09:43:06 +02:00
Seth R. Johnson
1bb94f2913 glib: fix 2.56 build with python@2 (#17144) 
* glib: fix 2.56 build with python@2

* flake8
 2020-06-17 23:32:25 -05:00
Joseph Ciurej
c8199ece65 python: fix patch issue for 2.7.X, 3.7.X (#17140) 
* python: fixing patch issue for 2.7.X, 3.7.X versions (#17128)

* python: fixing the C/C++ 'distutils' patching for @3.7.0:3.7.1
 2020-06-17 23:30:41 -05:00
Adam J. Stewart
c0cdc00409 oneDNN: add v1.5.0 (#17137) 2020-06-17 16:01:46 -05:00
Michael Kuhn
f7008f37d4 slurm: Fix build with gcc@10: 
gcc@10: defaults to -fno-common, which breaks slurm up to version
20-02-1. For more details, see https://gcc.gnu.org/gcc-10/porting_to.html
 2020-06-17 13:42:00 -07:00
Sergey Kosukhin
01b277ad0f openmpi: options for local transport (#16831) 2020-06-17 14:41:24 -05:00
Chris White
506f31b7a7 axom conduit mfem build fixes (#17121) 
* honor global compiler flags

* Honor debug variant when using global compiler flags

* Add cppflags to c/cxx flags, clarify flag handling
 2020-06-17 12:43:47 -05:00
vvolkl
03880f5413 Split hepmc Into hepmc and hepmc3 (#16892) 2020-06-17 12:13:27 -05:00
Michio Ogawa
ad18933ef4 FrontISTR: various updates to the package (#17089) 
* Added maintainers
* Refined dependencies
* Changed git url
 2020-06-17 17:45:51 +02:00
Sergey Kosukhin
eca08c77e3 openmpi: fixes for NAG compiler (#17073) 
* openmpi: fixes for NAG compiler

* openmpi: more fixes
 2020-06-17 10:32:08 -05:00
Seth R. Johnson
e90c229dab Fix/clarify some trilinos variants/dependencies (#17006) 
- Parallel HDF5 isn't required -- the comment seems to be about a
  transitive dependency with pnetcdf.
- Boost usage should respect the variant, not automatically be reenabled
  when choosing DTK.
 2020-06-17 09:34:53 -05:00
takanori-ihara
eb5f1886b7 py-tensorflow: Update for use with Fujitsu compiler (#17088) 
* py-tensorflow: Update for use with Fujitsu compiler

* py-tensorflow: remove -march option

* fix flake8 error
 2020-06-17 08:00:36 -05:00
darmac
dc0dfe9220 New package: lynx (#17099) 2020-06-16 23:04:00 -07:00
Muhammad Haseeb
d2b745b3d6 lua: requires -ltermcap when building (#17108) 2020-06-16 22:55:46 -07:00
Fabian Brandt
494a523636 libnetworkit: add version 7.0 (#17111) 2020-06-16 22:44:43 -07:00
Ryan Mast
0c28d8932f helics: Add version 2.5.2 2020-06-16 22:43:27 -07:00