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Author SHA1 Message Date
Patrick Gartung
4ff14bd0b2 Buildcache: skip binary string replacement with padding when the new install path is longer than the old install path. (#12227) 
* Raise an exception and exit with a meaningful message when binary path substitution fails.

* Skip binary text replacement with padding and issue a warning when the new install path is longer than the old install path.
 2019-08-01 12:07:04 -05:00
Ben Bergen
8922c1f666 Add HDF5 variant to Legion package (#12221) 2019-08-01 10:33:29 -06:00
Sajid Ali
e21e10837f modified: var/spack/repos/builtin/packages/blis/package.py (#12225) 2019-08-01 09:37:23 -05:00
Sajid Ali
f30b717744 Add libflame (#12193) 
* Add libflame

	new file:   var/spack/repos/builtin/packages/libflame/Makefile_5.1.0.patch
	new file:   var/spack/repos/builtin/packages/libflame/package.py

* 	modified:   var/spack/repos/builtin/packages/libflame/package.py
 2019-08-01 09:33:24 -05:00
Adam J. Stewart
61b824580e py-pyqt5: add missing py-enum34 dependency (#12224) 2019-08-01 13:30:35 +02:00
t-karatsu
9b03ab43ed bdw-gc: add variant for Multithreading (#12223) 2019-08-01 13:29:41 +02:00
Mark W. Krentel
e628f1b4eb unzip: fix build for cray back-end 
Fixes #12007.

The Cray cc wrappers don't handle the -s flag (strip) cleanly, It's
not essential to strip the binary, so just remove the flag on Cray.

Note: the default build on Cray is for the back end and the unzip
binary won't run on the front end.  To build for FE, use something
like arch=cray-fe-x86_64.
 2019-07-31 20:44:40 -07:00
Gregory Lee
2c2abb454c fix mpa package build error with a patch (#12217) 2019-07-31 16:48:06 -05:00
Gregory Lee
162f1338d9 patch launchmon to fix char * conversion error (#12219) 2019-07-31 16:47:35 -05:00
Rémi Lacroix
5c970613b6 Magma: fix prefix (#12220) 
`prefix` is not available in `cmake_args` method, use `self.prefix`.
Fixes #12214.
 2019-07-31 16:43:47 -05:00
Levi Baber
8ec9ebc92f should not need bin prefix on spack command (#12215) 2019-07-31 12:58:01 -05:00
Todd Gamblin
33701cc355 docs: update tutorial slides for PEARC19 2019-07-31 12:55:59 -05:00
Adam J. Stewart
f7d1df4d3a Update Package Creation Tutorial for PEARC19 (#12209) 
* Update Package Creation Tutorial for PEARC19

* A few remaining fixes

* Fix section link
 2019-07-31 12:54:09 -05:00
Matthieu Dorier
65a1db87f8 Preventing jsoncpp from building tests (#11948) 
* Preventing jsoncpp from building tests
jsoncpp: making -DJSONCPP_WITH_TESTS=OFF conditioned by self.run_tests
 2019-07-31 12:18:25 -05:00
Christoph Junghans
4ea5e177cd CMake: make ninja verbose as well (#12200) 2019-07-31 08:41:58 -06:00
Ondřej Čertík
7e61527f9e F18: Fix the location to the f18 binary (#12186) 2019-07-31 15:43:08 +02:00
jthies
ae1524821e phist: added version 1.8.0 (#12201) 2019-07-31 15:35:59 +02:00
t-karatsu
b744accaf6 igvtools: fixed query on jdk instead of java (#12195) 2019-07-31 14:49:51 +02:00
Javier Cervantes
a948954886 Print environment name when removing active env (#12198) 2019-07-31 14:40:11 +02:00
Adam J. Stewart
d973fca00e Fix Sphinx deprecation warning when building docs (#12205) 
* Fix Sphinx deprecation warning when building docs

* Set minimum required version of Sphinx
 2019-07-31 10:23:56 +02:00
Ryan S. Elliott
86ff5baed7 kim-api: added version 2.1.2 (#12189) 2019-07-31 09:13:13 +02:00
t-karatsu
268c806111 genomefinisher: fixed query on jdk instead of java (#12196) 2019-07-31 08:55:56 +02:00
Adam J. Stewart
db2bbbcecf Add pandas 0.25.0 (#12173) 2019-07-30 17:16:32 -05:00
Adam J. Stewart
59e9541386 Add tables 3.5.2 (#12172) 2019-07-30 17:16:15 -05:00
Adam J. Stewart
60da9303c6 Update numexpr dependency version (#12168) 2019-07-30 17:15:38 -05:00
Adam J. Stewart
70512b8ba2 Add py-matplotlib 3.1.1 (#12164) 2019-07-30 17:15:20 -05:00
Adam J. Stewart
482152e092 Add py-wxpython package (#12163) 2019-07-30 17:13:32 -05:00
Adam J. Stewart
c1c5f58d12 Add py-cairocffi package (#12161) 2019-07-30 17:13:02 -05:00
Adam J. Stewart
b34da4e108 Add SIPPackage base class (#12157) 2019-07-30 17:12:48 -05:00
Adam J. Stewart
f487f87e3e Add Magics 4.1.0 (#12078) 2019-07-30 17:11:47 -05:00
Adam J. Stewart
e728883c71 Add eccodes 2.13.0 (#12077) 2019-07-30 17:11:29 -05:00
Adam J. Stewart
354ef2f9ca Allow bsseeker to build with Python 3 (#12075) 2019-07-30 17:11:14 -05:00
Adam J. Stewart
e13bc0212c Add py-pipits 2.4 (#12074) 
* Add py-pipits 2.4

* Flake8 fix
 2019-07-30 17:10:57 -05:00
Justin S
175abecc0b mii: new package at 1.0.2 (#12184) 
* mii: new package at 1.0.2

* mii: fix improper formatting in description

* mii: add 1.0.3
 2019-07-30 16:16:41 -05:00
健美猞猁
544914f34b gromacs: added version 4.5.5 (#12197) 2019-07-30 16:07:07 +02:00
Ben Bergen
73a9d6556e New package: cgdb (#12154) 2019-07-29 17:19:53 -07:00
Hans Pabst
6db873532c LIBXSMM package: add version 1.13 and optional shared libs (#11998) 
* Add +shared variant, which builds shared library in addition to the
  static library.
* Install libraries even when specifying the header-only option
  (header-only is just about installing an additional folder).
* An additional make call is not required to build generator
  executables (they are built by default).
* Streamlined help-line of each variant.
 2019-07-29 17:14:41 -07:00
Toyohisa Kameyama
5f716b7ffa hpgmp package: Don't add cpu=native on ARM when using gcc 5.x or before (#12034) 2019-07-29 16:53:59 -07:00
Adam J. Stewart
b8b2fa226e CMOR package: add version 3.4.0 (Python3-compatible) (#12076) 2019-07-29 16:12:37 -07:00
Nick Forrington
6e9f51d1d2 Quantum Espresso package: Specify F90 compiler (#12119) 2019-07-29 15:53:39 -07:00
Adam J. Stewart
c9e5de85fd SimulationIO package: add version 9.0.1 (#12079) 2019-07-29 15:40:57 -07:00
Chuck Atkins
f18c9e0ba5 catalyst package: Fix paths used for intermediate code generation (#12082) 
Fixes #12065
 2019-07-29 15:31:07 -07:00
Adam J. Stewart
f88636b090 PISM package: add version 1.1.4 (#12083) 2019-07-29 15:26:03 -07:00
Adam J. Stewart
23420a6524 Typo fixes in Environments Tutorial (#12107) 2019-07-29 17:13:56 -05:00
Adam J. Stewart
9af155f0f6 Fix some Mac constraint checks (#12138) 
* Fix Mac platform check for dependency in py-ipython package: 'when'
  constraints in Spack directives must be Specs (either a Spec
  object or a Spec in string format)
* Fix Mac version check in py-numpy: platform.mac_ver() returns a
  3-part string as its first tuple item so the check as written would
  never pass; use Spack Version object to simplify check.
* Fix Mac version check in qt package (the check was incorrectly
  comparing ints and strings) and use Spack version object to
  simplify check.
 2019-07-29 15:05:02 -07:00
Glenn P Johnson
e7d9a6f426 Add conflicts statement for Python-3.6.7+ and Intel compiler 
Python-3.6.7 and up do not build with the Intel compiler

- https://bugs.python.org/issue35473
- https://bugs.python.org/issue37415
 2019-07-29 14:38:05 -07:00
Federico Ficarelli
dbd294c204 zeromq package: choose URL based on version; add versions (#12149) 
* Add versions 4.3.0, 4.3.1, and 4.3.2
* The URL format changed after 4.1.4, so this adds a url_for_version
  function to choose the URL format based on the version
 2019-07-29 14:36:33 -07:00
Hironori-Yamaji
43dd6b3418 Gromacs package: add openmp, mdrun_only, double_precision options (#12150) 2019-07-29 14:29:04 -07:00
Adam J. Stewart
c3dc63ce8f New package: py-pytest-isort (#12160) 2019-07-29 14:02:06 -07:00
Jon Rood
3e02dc258b LLVM package: add optional libomp_tsan support (#11793) 
This is only available for LLVM version 6 or greater. So this also
adds a conflict statement for earlier versions of LLVM.
 2019-07-29 12:23:15 -07:00