Commit Graph

39550 Commits

Author SHA1 Message Date
Adam J. Stewart
b0afb619de
py-geemap: add new package (#48602) 2025-01-28 14:12:25 +01:00
Adam J. Stewart
7a82c703c7
JAX: add v0.4.32+ (#46346)
* JAX: add v0.4.34

* Disable search for clang

* Update CUDA flags

* Add py-jax 0.4.33, comment out until py-jaxlib 0.4.33 is also released

* Fix GCC build

* Try TF_NVCC_CLANG

* py-jax: add v0.4.34

* jax no longer has separate tags for jaxlib

* Install compiled wheel

* Join path before glob

* Wheel is in spack stage, not tmp path

* Add 0.4.35

* Add newer versions

* Build system has been refactored yet again

* Drop clang

* Fix build with source tarball, rocm support

* Support GCC

* Remove clang-specific compiler flags

* enable_cuda flag was removed

* Fix logic

* py-jax: add v0.4.38

* Add patch to fix GCC support

* Patch no longer needed

* Skip patching, directly pass flags

* New flags

* Remove unused import

* Patch changed

* Use older version of patch

* Newer patch

* Add CUDA symlink

* Symlink more directories

* Recursive symlink

* Import function

* Recursive search

* Undo cuda changes

* Add v0.5.0

* I quit
2025-01-28 13:37:50 +01:00
G-Ragghianti
0d3667175a
papi: fix error finding gmake during post-install testing (#48592) 2025-01-28 12:51:10 +01:00
Wouter Deconinck
a754341f6c
hep stack: additional event generator packages (#48565)
* hep stack: additional event generator packages

* hep: adidtional packages

* hep: collier doesn't have +pic +shared

* py-awkward-cpp: fix scikit-build-core range of applicability

* hep: disable agile

* hep: disable garfieldpp and genie

* py-wxpython: depends_on pkgconfig even if using external wxwidgets

* hep: disable professor
2025-01-28 05:38:58 -06:00
Thomas Bouvier
a50c45f00c
py-flash-attn: add missing triton dependency (#48645) 2025-01-28 11:43:27 +01:00
Sreenivasa Murthy Kolam
87e65e5377
Bump up the version for rocm-6.3.1 release (#48440)
This PR updates the versions for the rocm recipes for rocm-6.3.1 release.
2025-01-28 01:53:55 -08:00
Etienne Ndamlabin
50fe96aaf6
damaris: add v1.12.0, update maintainers (#48674)
Co-authored-by: Etienne Ndamlabin <jean-etienne.ndamlabin-mboula@inria.fr>
2025-01-28 10:13:21 +01:00
Rocco Meli
56495a8cd8
dftd4, mctc-lib: enable cmake builds and add multicharge package (#48594)
* enable cmake builds

* [@spackbot] updating style on behalf of RMeli

* Update var/spack/repos/builtin/packages/dftd4/package.py

Co-authored-by: Sebastian Ehlert <28669218+awvwgk@users.noreply.github.com>

* Update var/spack/repos/builtin/packages/mctc-lib/package.py

* include

* fix

* use sha256

* update

---------

Co-authored-by: RMeli <RMeli@users.noreply.github.com>
Co-authored-by: Sebastian Ehlert <28669218+awvwgk@users.noreply.github.com>
2025-01-28 09:53:22 +01:00
Harmen Stoppels
c054cb818d
import os.path -> os (#48709) 2025-01-28 09:45:43 +01:00
Benjamin Meyers
bc28ec35d1
py-ogb: update version (#48740) 2025-01-27 17:10:53 -07:00
Massimiliano Culpo
e47a6059a7
Improve definition of a few placeholder packages (#48730)
* Improve definition of a few placeholder packages
   These packages are placeholders for vendor provided software,
   that is not buildable, and should be declared as external.
* ibm-java: remove package, as asked by maintainer
2025-01-27 15:34:34 -08:00
Matt Thompson
0d170b9ef3
mapl: fix too strict oneapi conflict (#48743)
* mapl: fix too strict oneapi conflict
* Use older style
* Add diag-disable flag
* Updates from Dom
2025-01-27 15:14:38 -08:00
Garth N. Wells
5174cb9180
Add nanobind 2.4.0 (#48721) 2025-01-27 15:07:11 -08:00
Dom Heinzeller
22ba366e85
Fix creating a bootstrap mirrors (#48252)
Regressed in #47126 

Spack was not interpreting mirrors using relative path with respect to the
metadata directory.

---------

Co-authored-by: Massimiliano Culpo <massimiliano.culpo@gmail.com>
2025-01-27 22:37:29 +00:00
Massimiliano Culpo
13558269b5
Fix a few minor issues in tests (#48735)
* test_no_matching_compiler_specs: does not need mock_low_high_config,
  since mutable_config is already used at class level
* bindist.py: setup a configuration that doesn't super-impose builtin.mock
  over builtin
* builder.py: use a mock configuration for the tests
2025-01-27 23:36:27 +01:00
Stephen Nicholas Swatman
615b7a6ddb
geomodel: Add version 6.8.0 (#48727)
This commit adds version 6.8.0 of GeoModel. As far as I can tell from
the change notes, there are no changes required to the build
configuration or dependencies.
2025-01-27 14:09:12 -08:00
Dennis Klein
0415b21d3d
fairmq: add v1.9.1 (#48724) 2025-01-27 14:08:32 -08:00
Matthieu Dorier
053c9d2846
librdkafka: added version 2.6.1 and 2.8.0 (#48725) 2025-01-27 14:06:58 -08:00
Harmen Stoppels
1e763629f6
dealii: add vtk backward compat bound (#48744) 2025-01-27 15:00:32 -07:00
Harmen Stoppels
7568687f1e
vtk: fix incorrect detection of -fvisibility (#48737) 2025-01-27 22:12:40 +01:00
Vicente Bolea
3b81c0e6b7
zfp: add smoke test (#48598) 2025-01-27 12:33:11 -08:00
Joe
c764400338
Allowing environment variables to be set in a spack.yaml (#47587)
This adds a new configuration section called `env_vars:` that can be set in an environment.

It looks very similar to the existing `environment:` section that can be added to `modules.yaml`,
but it is global for an entire spack environment. It's called `env_vars:` to deconflate it with spack
environments (the term was too overloaded).

The syntax looks like this:

```yaml
spack:
  specs:
    - cmake%gcc
  env_vars:
    set:
      ENVAR_SET_IN_ENV_LOAD: "True"
```

Any of our standard environment modifications can be added to the `env_vars` section, e.g.
`prepend_path:`, `unset:`, `append_path:`, etc.  Operations in `env_vars:` are performed
on `spack env activate` and undone on `spack env deactivate`.
2025-01-27 12:20:22 -08:00
Mikael Simberg
4e8a6eec1a
fmt: Add 11.1.3 (#48726) 2025-01-27 13:03:43 -07:00
Alec Scott
ebc9f03dda
Go build system: reduce resulting installation sizes (#47943)
* Reduce the size of outputted go built binaries
* Remove unused import from go package
* go: remove comment from setup dependents build env
* Add back missing imports after rebase
2025-01-27 11:32:56 -08:00
Alec Scott
8ac0bd2825
GoPackage: respect -j concurrency (#48421) 2025-01-27 12:58:29 -05:00
Tara Drwenski
cc9e0137df
Initialize deque with path string (#48734) 2025-01-27 17:42:29 +01:00
Adam J. Stewart
b8e448afa0
py-timm: add v1.0.14 (#48648) 2025-01-27 11:16:37 -05:00
Adam J. Stewart
209d670bf3
py-scikit-image: add v0.25.1 (#48728) 2025-01-27 11:13:41 -05:00
Harmen Stoppels
c6202842ed
Improve error handling in urlopen / socket read (#48707)
* Backward compat with Python 3.9 for socket.timeout
* Forward compat with Python [unknown] as HTTPResponse.geturl is deprecated
* Catch timeout etc from .read()
* Some minor simplifications: json.load(...) takes file object in binary mode.
* Fix CDash code which does error handling wrong: non-2XX responses raise.
2025-01-27 16:59:05 +01:00
Taillefumier Mathieu
b2a75db030
Force rocm dependency on hipfft with +rocm is given (#48211)
Make sure that hipfft+rocm is explicit when +rocm is true.

Co-authored-by: Rocco Meli <r.meli@bluemail.ch>
2025-01-27 11:33:31 +01:00
Greg Becker
0ec00a9c9a
rewiring.py: eliminate code duplication from bindist (#48723) 2025-01-27 10:09:04 +01:00
psakievich
5e3020ad02
filesystem.py: fix recursive_mtime_greater_than (#48718) 2025-01-26 08:29:29 +01:00
Dave Keeshan
a0d0e6321f
verible: v0.0.3929 (#48701) 2025-01-25 13:32:21 -07:00
Dave Keeshan
0afac0beaa
yosys: add v0.49 (#48700) 2025-01-24 12:36:19 -08:00
Thomas-Ulrich
6155be8548
New Package: PUMGen (#48705)
* add pumgen package
* remove netcdf variant
* remove scorec variant, move zoltan dep
* fix license
2025-01-24 12:32:21 -08:00
Matt Thompson
611cb98b02
mapl: add v2.53.0 (#48712) 2025-01-24 13:09:14 -07:00
Mark W. Krentel
ea5742853f
hpcviewer: add version 2025.01 (#48670) 2025-01-24 10:52:18 -08:00
Harmen Stoppels
25a3e8ba59
Remove unused Tokenizer.full_match (#48650) 2025-01-24 15:53:42 +01:00
Mikael Simberg
7fbb3df6b0
Revert "pika: Add conflict between HIP and GCC (libstdc++) >= 13 (#46291)" (#48693)
The conflict is too strict and prevents usable combinations from being
concretized. Some packages depend on pika, but do not include pika
headers in HIP device code files, and can thus be compiled even with the
bad combination of HIP and GCC versions.
2025-01-24 07:35:11 -07:00
AMD Toolchain Support
a728db95de
Allow scipy to be built with AOCC again (#48505)
Co-authored-by: Phil Tooley <phil.tooley@amd.com>
2025-01-24 11:13:47 +01:00
Juan Miguel Carceller
7bc4069b9e
py-awkward: add dependency for py-importlib-metadata (#47027)
* py-awkward: add dependency on py-importlib-metadata and py-fsspec
* Implement suggested constraint and dependency type changes

---------

Co-authored-by: jmcarcell <jmcarcell@users.noreply.github.com>
2025-01-23 16:22:28 -08:00
Dom Heinzeller
51fc195d14
Fix var/spack/repos/builtin/packages/ectrans/package.py: instead of declaring a conflict with Intel LLVM compilers, apply patch from upstream (#48687) 2025-01-23 16:18:48 -08:00
Harmen Stoppels
27a0593104
openmpi: do not pass --with-wrapper-ldflags (#48673)
On macOS you cannot unconditionally pass `-rpath`, it can conflict with
`-r`.

mpicc is not the place to inject rpaths to compiler runtime
libraries. That's up to the compiler's config files (spec files in gcc,
config files in llvm).

Also remove some patches that are redundant in newer versions of
openmpi.
2025-01-23 15:53:49 +01:00
Juan Miguel Carceller
f95e27a159
SIPPackage: add gmake as a build dependency to be able to build py-pyqt5 (#48660) 2025-01-23 15:51:59 +01:00
Valentin Volkl
effe433c96
gaudi: set GAUDI_PLUGIN_PATH for runtime on macos (#48039)
* set GAUDI_PLUGIN_PATH

* [@spackbot] updating style on behalf of vvolkl

---------

Co-authored-by: vvolkl <vvolkl@users.noreply.github.com>
2025-01-23 07:55:21 -06:00
Juan Miguel Carceller
21988fbb18
pandoramonitoring: add patch for compiling with C++20 (#48659)
* pandoramonitoring: add patch for compiling with C++20

* Fix patch for PandoraMonitoring

---------

Co-authored-by: jmcarcell <jmcarcell@users.noreply.github.com>
2025-01-23 06:25:26 -06:00
Massimiliano Culpo
2db654bf5a
Define the DB index file name in a single place (#48681) 2025-01-23 12:17:34 +01:00
Harmen Stoppels
9992b563db
Improve spack.build_systems typing (#48590) 2025-01-23 12:15:43 +01:00
Harmen Stoppels
daba1a805e
build_environment.py: clear CONFIG_SITE for configure scripts (#48690)
Should be sufficient to set CONFIG_SITE to /dev/null before running configure to 
prevent any config site file to be loaded, which currently causes non-determinism in builds.

Setting the variable CONFIG_SITE prevents configure files to check $prefix/share/config.site, 
$prefix/etc/config.site, $ac_default_prefix/share/config.site, $ac_default_prefix/etc/config.site 
so we don't have to patch a block of code.
2025-01-23 11:45:52 +01:00
Wouter Deconinck
832bf95aa4
fmt: add v11.1.{1,2}; spdlog: add v1.15.0 (#48402)
* fmt: add v11.1.1

* spdlog: add v1.15.0

* spdlog: terminate string

* fmt: add v11.1.2

* spdlog: apply fmt-11.1 support patch up to 1.15.0

* spdlog: add prereq patch to ensure intended patch applies cleanly

* spdlog: fix patch checksum
2025-01-23 09:34:20 +01:00