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Author SHA1 Message Date
Harmen Stoppels
74e2625dcf compression.py: buffered copy (#31533) 2022-07-12 16:49:59 +02:00
RichardABunt
a4f0522468 arm-forge: add 22.0.2 and 22.0.3. (#31432) 2022-07-12 16:21:07 +02:00
Marco De La Pierre
ff67e10f60 lammps package: added fftw_precision variant (#31459) 2022-07-12 16:14:58 +02:00
Axel Huebl
c8931e390a WarpX: 22.07 (#31508) 
Update `warpx` & `py-warpx` to the latest release, `22.07`.
 2022-07-12 16:13:51 +02:00
Harmen Stoppels
b2c519470b environment.py: only acquire write lock when necessary (#31493) 2022-07-12 16:12:43 +02:00
marcosmazz
9087224e04 OpenMX: add v3.9 (#31466) 
Co-authored-by: Marcos Mazzini - <mmazzini@serafin.ccad.unc.edu.ar>
 2022-07-12 15:44:02 +02:00
Stephen Sachs
110a35a520 py-gevent: deprecated compiler flags (#31469) 
Co-authored-by: Stephen Sachs <stesachs@amazon.com>
 2022-07-12 15:23:26 +02:00
miheer vaidya
ea9151b2a5 abseil: add v20220623 (#31507) 2022-07-12 15:21:31 +02:00
Nicholas Brunhart-Lupo
9708afc3b3 amr-wind: add "ascent" variant (#31376) 2022-07-12 14:38:24 +02:00
Harmen Stoppels
d904a789d5 env depfile: add missing touch (#31494) 
Oversight in #31433, the non-phony `env` target was missing a file being
created for it, which can cause make to infinitely loop when including
multiple generated makefiles.
 2022-07-12 14:16:31 +02:00
Erik Schnetter
7917f87c63 cuda: New version 11.5.2 (#31463) 2022-07-12 13:52:12 +02:00
dependabot[bot]
e33a57ab65 build(deps): bump actions/setup-python from 4.0.0 to 4.1.0 (#31526) 
Bumps [actions/setup-python](https://github.com/actions/setup-python) from 4.0.0 to 4.1.0.
- [Release notes](https://github.com/actions/setup-python/releases)
- [Commits](d09bd5e600...c4e89fac7e)

---
updated-dependencies:
- dependency-name: actions/setup-python
  dependency-type: direct:production
  update-type: version-update:semver-minor
...

Signed-off-by: dependabot[bot] <support@github.com>

Co-authored-by: dependabot[bot] <49699333+dependabot[bot]@users.noreply.github.com>
 2022-07-12 13:50:30 +02:00
Mark W. Krentel
7f830295ae hpcviewer: add v2022.06 (#31532) 2022-07-12 13:41:13 +02:00
Massimiliano Culpo
89b8d33d05 Remove os.getcwd from function signature (#31480) 
fixes #29730

This is also wrong since it binds the directory at the time
of module import, rather than the one at the time of function
call.
 2022-07-12 10:08:37 +02:00
Jonathon Anderson
25f198aa91 Sanitize ownership when extracting tarfiles (#31524) 2022-07-12 09:28:24 +02:00
Adam J. Stewart
5bd1074afb py-hatchling: add new packages, document new build backend (#31512) 
* py-hatchling: add new package, document new build backend

* Minor doc changes

Co-authored-by: Tamara Dahlgren <35777542+tldahlgren@users.noreply.github.com>

Co-authored-by: Tamara Dahlgren <35777542+tldahlgren@users.noreply.github.com>
 2022-07-11 16:23:28 -07:00
Michael Kuhn
18b51e19df glib: add 2.72.3 (#31516) 2022-07-11 17:09:43 -06:00
renjithravindrankannath
21822f233c Fix for sanity check failure in spack upstream code: atmi, hip-rocclr (#31454) 
* Fix for sanity check failure in spack upstream code

* Style check failure correction

* Correction as per the review comments
 2022-07-11 15:01:47 -07:00
Keita Iwabuchi
5f7f8ce1eb Metall package: add v0.21 (#31482) 
* Metall package: add dependency to GCC for build test

* Package Metall: add v.017

* Package Metall: update the package file

* Update var/spack/repos/builtin/packages/metall/package.py

Co-authored-by: Bernhard Kaindl <43588962+bernhardkaindl@users.noreply.github.com>

* Metall package: add v0.18 and v0.19

* Metall Package: add v0.20

* Metall package: add v0.21

Co-authored-by: Bernhard Kaindl <43588962+bernhardkaindl@users.noreply.github.com>
 2022-07-11 14:54:57 -07:00
Richard Berger
ac09607a5a ports-of-call: new version 1.2.0, simplify (#31485) 2022-07-11 14:53:36 -07:00
miheer vaidya
e0bbf26f1f [cppcodec] new package (#31506) 2022-07-11 14:11:24 -07:00
Adam J. Stewart
1d827a9ff6 py-mypy: add v0.961 (#31503) 2022-07-11 12:34:09 -07:00
Adam J. Stewart
ba0cff1831 py-gpytorch: add v1.7.0 (#31504) 2022-07-11 12:30:58 -07:00
Adam J. Stewart
12699787e7 py-numpy: add v1.23.1 (#31510) 
* py-numpy: add v1.23.1

* Remove packaging dep
 2022-07-11 10:47:20 -07:00
Adam J. Stewart
c020894f36 py-torchgeo: add v0.3.0 (#31514) 2022-07-11 10:10:30 -07:00
Carlos Bederián
05a32b5cf5 ucx: add 1.13.0 (#31517) 2022-07-11 10:06:33 -07:00
Michael Kuhn
359d094528 julia: fix patch (#31515) 2022-07-11 16:13:47 +02:00
Harmen Stoppels
92dfe7f25b man-db: Don't use DESTDIR (#31492) 2022-07-10 21:41:55 +02:00
Erik Schnetter
2159ce036e openssl: New version 1.1.1q (#31487) 2022-07-08 13:25:43 -06:00
Adam J. Stewart
7e6dbfb185 py-setuptools: add v63.0.0 (#31444) 2022-07-08 10:41:15 -07:00
Harmen Stoppels
4043b13d59 vim: deprecate 9.0.0000, add 9.0.0045 (#31490) 2022-07-08 10:16:50 +00:00
Luke Diorio-Toth
ec7513c8b5 py-panaroo, py-edlib, and py-intbitset: new packages (#31452) 2022-07-07 18:13:39 -06:00
Erin Newcomer
44b48cfe46 Package/py phylophlan (#31422) 
* py-phylophlan: new package

* py-phyloseq: new package

* py-phylophlan: style fix

* py-phylophlan: fixed dependencies

* py-phylophlan: style fix
 2022-07-07 14:06:55 -07:00
Tamara Dahlgren
a12ce9fd59 OpenBabel: Make building with GUI an option (#31456) 2022-07-07 09:43:17 -07:00
Cory Bloor
bb92ea59a2 Fix spack edit message when no editor installed (#31412) 
When no default editor is installed and no environment variable is set,
which_string would return None and this would be passed to os.execv
resulting in a TypeError. The message presented to the user would be:

    Error: execv: path should be string, bytes or os.PathLike,
    not NoneType

This change checks that which_string has returned successfully before
attempting to execute the result, resulting in a new error message:

    Error: No text editor found! Please set the VISUAL and/or EDITOR
    environment variable(s) to your preferred text editor.

It's not strictly necessary, but I've also changed try_exec to catch
all errors rather than just OSErrors. This would have provided slightly
more context for the original error message.
 2022-07-07 17:08:15 +02:00
Stephen Sachs
626b239c96 [py-distributed] Add version 2022.2.1 (#31465) 2022-07-07 08:06:18 -07:00
Adam J. Stewart
211030cd19 py-pytorch-lightning: remove upper bounds on deps (#31443) 2022-07-07 17:05:33 +02:00
Stephen Sachs
3787f0c64c mpas-model: Overwrite compiler args in Makefile (#31431) 
Use 8 byte reals only when `precision=double` is set

The pre-defined compilation targets do not follow the usual behavior of
Makefiles. Compiler flags are set as strings (not Makefile variables) and as
such are not able to be overridden by environment variables. This patch changes
the behavior to the expected behavior of a Makefile such that `fflags` etc have
the desired effect.

Co-authored-by: Stephen Sachs <stesachs@amazon.com>
 2022-07-07 17:04:51 +02:00
Ryan Marcellino
be65e4471e speexdsp: add pkgconfig dependency (#31455) 2022-07-07 16:53:11 +02:00
Adam J. Stewart
8745009492 py-tensorboard: install from wheel (#31445) 2022-07-07 16:48:06 +02:00
Adam J. Stewart
7c5116a73a py-rasterio: add v1.3.0 (#31457) 2022-07-07 16:46:52 +02:00
Stephen Sachs
e6bdbde54e libzmq: fix issue with newer GCC and master branch (#31468) 
Co-authored-by: Stephen Sachs <stesachs@amazon.com>
 2022-07-07 08:45:37 -06:00
Adam J. Stewart
386f08c1b4 py-torch: re-add headers/libs properties (#31446) 2022-07-07 16:31:09 +02:00
Adam J. Stewart
9c437e2a10 py-torchgeo: tiff support required (#31447) 2022-07-07 16:30:18 +02:00
Marie Houillon
d393260a11 Fix conditional dependencies for openCARP (#31478) 2022-07-07 08:21:41 -06:00
Tamara Dahlgren
1b919d306f Documentation: Add SourceforgePackage to the build systems docs (#31473) 2022-07-07 14:30:22 +02:00
Stephen Sachs
ad95b0d01d [py-ipyparallel] setuptools.config.StaticModule moved (#31467) 
* [py-ipyparallel] setuptools.config.StaticModule moved

... in py-setuptools@61

* [py-ipyparallel] setuptools fix only added to release 8.2.1

https://github.com/ipython/ipyparallel/pull/680

* [py-ipyparallel] Fix typo

Co-authored-by: Stephen Sachs <stesachs@amazon.com>
 2022-07-07 03:17:36 -06:00
Vanessasaurus
6b1e86aecc removing feature bloat: monitor and analyzers (#31130) 
Signed-off-by: vsoch <vsoch@users.noreply.github.com>

Co-authored-by: vsoch <vsoch@users.noreply.github.com>
 2022-07-07 00:49:40 -06:00
Stephen Hudson
3338d536f6 libEnsemble: add v0.9.2 (#31471) 2022-07-06 19:14:12 -07:00
Erik Schnetter
6cbcc94fc9 kokkos: New version 3.6.01 (#31462) 2022-07-06 14:33:48 -06:00