Commit Graph

17740 Commits

Author SHA1 Message Date
Harmen Stoppels
e168320bb1 spack: Add package (#25979)
* Make python 2 use 'from __future__ import absolute_import' to allow import spack.pkgkit

* Add Spack

* Improve ranges
2021-10-12 11:39:39 -04:00
Sergei Shudler
f58f5f8a0d babelflow, parallelmergetree: add the current versions (#26660) 2021-10-12 17:36:13 +02:00
Jonas Thies
f66ae104bf phist: force MPI compiler wrappers (#26312)
* packages/phist, re #26002: force phist to use MPI compiler wrappers (copied from trilinos package)

* packages/phist re #26002, use cmake-provded FindMPI module only

* packages/phist source code formatting

* packages/phist: set MPI_HOME rather than MPI_BASE_DIR, thanks @sethri.

* phist: delete own FindMPI.cmake for older versions (rather than patching it away)

* packages/phist: remove blank line

* phist: adjust sorting of imports

* phist: change order of imports
2021-10-12 11:11:00 -04:00
Joseph Wang
1e382d6d20 madgraph5amc: Add changes fixing bugs shown by gcc10 (#26643) 2021-10-12 15:55:48 +02:00
Martin Aumüller
6f8f37ffb1 ispc: update development branch name and limit to llvm@12 (#26676)
1.16 and 1.16.1 are not compatible with LLVM 13
2021-10-12 14:31:24 +02:00
Massimiliano Culpo
551120ee0b ASP-based solver: decrease the priority of multi-valued variant optimization for root (#26677)
The ASP-based solver maximizes the number of values in multi-valued
variants (if other higher order constraints are met), to avoid cases
where only a subset of the values that have been specified on the
command line or imposed by another constraint are selected.

Here we swap the priority of this optimization target with the
selection of the default providers, to avoid unexpected results
like the one in #26598
2021-10-12 14:15:48 +02:00
Martin Diehl
66b32b337f damask{,-grid,-mesh}: add @3.0.0-alpha5 (#26570) 2021-10-12 13:22:09 +02:00
Maciej Wójcik
4b2cbd3aea gromacs: Add Gromacs 2020.6 and Plumed 2.7.2 (#26663) 2021-10-12 13:01:10 +02:00
Bernhard Kaindl
cb06f91df7 boost: Fix build of 1.53:1.54 with glibc>=2.17 (#26659)
Fix missing declaration of uintptr_t with glibc>=2.17 in 1.53:1.54
See: https://bugs.gentoo.org/482372
2021-10-12 10:59:36 +02:00
Manuela Kuhn
580a20c243 py-templateflow: add 0.4.2 (#26471)
* py-templateflow: add 0.4.2

* py-templateflow: fix python dependency for 0.4.2

* py-templateflow: remove wheel dependency for older versions
2021-10-11 21:37:50 -05:00
Manuela Kuhn
eb486371b2 py-pysurfer: add new package (#26638) 2021-10-11 21:36:43 -05:00
Manuela Kuhn
0da892f2dd py-pandas: fix installation and tests for versions @:0.25 (#26668) 2021-10-12 00:44:32 +00:00
Daniele Cesarini
a36a5ab624 fleur: new package (#26631) 2021-10-12 02:31:23 +02:00
Todd Kordenbrock
af2ecf87d4 Faodel: Update for the v1.2108.1 release (#26516) 2021-10-11 23:17:42 +00:00
Valentin Volkl
a0b9face0d frontier-client: add missing openssl dependency (#26636) 2021-10-12 01:02:12 +02:00
Kevin Pedretti
0b62974160 openblas: fix build on riscv64 (#26565)
OpenBLAS now has support for the riscv64 architecture. This commit
extends the spack openblas package.py to handle building on riscv64.
2021-10-12 00:55:45 +02:00
Alan Sill
833f1de24a bcl2fastq2: add boost@1.55 as default boost dependency (#26655)
When PR #26659 is merged, boost version boost@1.54.0 will be available for build too.

Co-authored-by: Bernhard Kaindl <43588962+bernhardkaindl@users.noreply.github.com>
2021-10-11 22:21:17 +00:00
Bernhard Kaindl
4eb176b070 motif package: fix linking the simple_app demo program (#26574) 2021-10-11 15:00:42 -07:00
Desmond Orton
95e63e0c29 New Package Qualimap:2.2.1 (#26615)
Co-authored-by: Bernhard Kaindl <43588962+bernhardkaindl@users.noreply.github.com>
2021-10-11 19:28:34 +00:00
Derek Ryan Strong
2644a15ff9 GNU parallel package: add version 20210922 (#26591) 2021-10-11 12:08:06 -07:00
Marie Houillon
c7785b74be openCARP packages: add version 8.1 (#26602) 2021-10-11 12:07:05 -07:00
Bernhard Kaindl
260f4ca190 mapserver: Add missing deps: giflib and postgresql (#26619) 2021-10-11 12:04:18 -07:00
Seth R. Johnson
8f62039d45 llvm: add conflict for newer apple-clang versions (#26633) 2021-10-11 17:49:23 +02:00
Bernhard Kaindl
2e9512fe8b mesa: gallium fails with llvm@13: use 'llvm@6:12', add mesa@21.2.3 (#26627)
The software rasterizer of Mesa's Gallium3D(even @21.2.3) fails to
build with llvm@13.0.0, use: depends_on('llvm@6:12', when='+llvm')
2021-10-11 17:34:33 +02:00
Matthew Archer
e034930775 kahip: update build system to cmake for v3.11, retain scons for older versions (#25645)
* kahip: update to cmake for v3.11, retain scons for older versions

* kahip: update build system to cmake for v3.11, retain SCons for older versions

* address PR comments and add maintainer

* address PR comments - correct version to 2.10, add deprecated and url, and remove scons version
2021-10-11 10:20:43 -05:00
Daniele Cesarini
79aba5942a Update of siesta libs (#26489) 2021-10-11 09:09:39 -05:00
iarspider
78200b6b41 Add new versions of kiwisolver (#26597) 2021-10-11 09:09:01 -05:00
iarspider
ad75f74334 New package: py-cppy (required for py-kiwisolver) (#26645) 2021-10-10 17:14:20 -05:00
Manuela Kuhn
4e1fdfeb18 py-nilearn: add 0.4.2 and 0.6.2 (#26635) 2021-10-09 19:14:13 -05:00
Manuela Kuhn
7f46b9a669 py-pyvistaqt: add new package (#26637) 2021-10-09 21:00:00 +00:00
Michael Kuhn
5deb8a05c4 environment-modules: fix build (#26632)
PR #25904 moved the `--with-tcl` option to only older versions. However,
without this option, the build breaks:
```
checking for Tcl configuration... configure: error: Can't find Tcl configuration definitions. Use --with-tcl to specify a directory containing tclConfig.sh
```
2021-10-09 12:43:54 -05:00
Bernhard Kaindl
9194ca1e2f idna: Add versions 2.9 for sierrapy #23768 and 3.2(current) (#26616)
py-sierrapy was merged accidentally and pins its versions to exact
numbers. Add 2.9 as the version for sierrapy and the current 3.2
2021-10-09 11:31:11 -05:00
Joseph Wang
e6cc92554d py-awkward: add py-yaml as depends (#26626) 2021-10-09 17:35:22 +02:00
Joseph Wang
03ab5dee31 evtgen: fix pythia typo (#26625) 2021-10-09 16:11:58 +02:00
Bernhard Kaindl
93df47f4d5 librsvg: fix build when does not use -pthread for linking (#26592)
librsvg uses pthread_atfork() but does not use -pthread on Ubuntu 18.04 %gcc@8
2021-10-09 13:10:13 +02:00
Derek Ryan Strong
4b5cc8e3bd Add R 4.1.1 (#26589) 2021-10-08 20:02:03 -05:00
Derek Ryan Strong
e89d4b730a Add Julia 1.6.3 (#26624) 2021-10-09 00:58:19 +00:00
Bernhard Kaindl
21ce23816e py-twisted,py-storm: dep on zope.interface, bump storm version (#26610)
* py-twisted,py-storm: dep on zope.interface, bump storm version

py-twisted and py-storm's import tests need zope.interface.
py-storm: Use pypi and add version 0.25. It didn't change reqs.
zope.infterface@4.5.0 imports removed Feature: Use setuptools@:45

Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>

* py-storm: all deps updated with type=('build', 'run')

Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>
2021-10-08 21:20:39 +00:00
psakievich
8ebb705871 Trilinos: update for CUDA and Nalu-Wind (#26614) 2021-10-08 21:08:54 +00:00
Bernhard Kaindl
7e8f2e0c11 py-hypothesis: Add variants django, dumpy, pandas and fix import tests (#26604) 2021-10-08 21:00:47 +00:00
Manuela Kuhn
654268b065 py-bcrypt, py-bleach, py-decorator, py-pygdal: fix python dependency (#26596)
* py-bcrypt, py-bleach, py-decorator, py-pygdal: fix python dependency

* Update var/spack/repos/builtin/packages/py-bleach/package.py

Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>

Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>
2021-10-08 15:56:22 -05:00
Bernhard Kaindl
6d0d8d021a py-pymatgen: fix build of old versions, bump version to 2021.3.9 (#26249)
Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>
2021-10-08 19:54:40 +00:00
Bernhard Kaindl
f1f614ee9f py-anytree: Add dep py-six@1.9.0 as required by setup.py (#26603)
Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>
2021-10-08 19:36:12 +00:00
Manuela Kuhn
88c33686fd py-matplotlib: fix 3.4.3 (#26586)
* py-matplotlib: fix 3.4.3

* Update var/spack/repos/builtin/packages/py-matplotlib/package.py

Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>

Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>
2021-10-08 13:52:10 -05:00
Bernhard Kaindl
de86726483 py-traceback2: Fix depends_on: add six and py-linecache2 (#26607) 2021-10-08 13:35:36 -05:00
Bernhard Kaindl
a95c1dd615 py-keras-preprocessing: Add missing deps: six@1.9.0: and numpy@1.9.1: (#26605)
* py-keras-preprocessing: Add missing deps: six@1.9.0: and numpy@1.9.1:

Add deps: pip download --no-binary :all: keras-preprocessing==1.1.2
Collecting numpy>=1.9.1
  Installing build dependencies: started
Collecting six>=1.9.0

* Update var/spack/repos/builtin/packages/py-keras-preprocessing/package.py

Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>

Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>
2021-10-08 13:34:25 -05:00
Manuela Kuhn
32b35e1a78 py-neurora: add new package (#26479) 2021-10-08 13:39:45 +00:00
Rodrigo Ceccato de Freitas
169d0a5649 cling: add missing CMake dependency (#26577) 2021-10-08 09:28:37 +02:00
Bernhard Kaindl
449a5832c8 llvm: llvm@13+libcxx needs a very recent C++ compiler (#26584)
libc++-13 does not support %gcc@:10, see:
https://bugs.llvm.org/show_bug.cgi?id=51359#c1

https://libcxx.llvm.org/#platform-and-compiler-support says:
- GCC    11     - latest stable release per GCC’s release page
- Clang: 11, 12 - latest two stable releases per LLVM’s release page
- AppleClang 12 - latest stable release per Xcode’s release page
2021-10-08 00:25:51 +00:00
Pedro Demarchi Gomes
28529f9eaf re2 pic support (#26513) 2021-10-08 01:01:40 +02:00