Commit Graph

32184 Commits

Author SHA1 Message Date
Manuela Kuhn
36df918e7d py-bleach: add 5.0.1 (#32727) 2022-09-21 09:48:16 -05:00
Laurent Aphecetche
874364bf4d vgm: add v5-0 (#32742) 2022-09-21 15:38:52 +02:00
Tamara Dahlgren
f12ececee5 Docs: Update pipeline ci rebuild to add --tests (plus fixed typos) (#32048) 2022-09-21 14:23:58 +02:00
Garth N. Wells
1313bc99a6 dolfinx: fix depends_on directive missing a version (#32730) 2022-09-21 10:12:22 +02:00
Adam J. Stewart
e45bc8440b pango: harfbuzz+coretext required on macOS (#32637) 2022-09-20 17:57:50 -06:00
Paulo Baraldi Mausbach
16692b802b New python package support: py-river (#32718) 2022-09-20 15:47:08 -05:00
John W. Parent
fd66f55e3c cmake: add v3.24.1 and v3.24.2 (#32654) 2022-09-20 11:24:16 -07:00
Wouter Deconinck
4b66364b06 gaudi: @:36 fails to build with fmt@9: (#32699)
Since fmt@9.0.0 and 9.1.0 were [added](6c4acfbf83) to spack a few days ago, gaudi fails to compile with default concretization. Since gaudi developers are usually paying attention to new versions of dependencies, I'm going to assume (perhaps optimistically) that the next bugfix version of gaudi will fix this (even though the issue has not been reported yet to Gaudi; I posted on the [key4hep public mirror](https://github.com/key4hep/Gaudi/issues/1)).
2022-09-20 11:20:55 -07:00
HELICS-bot
692f1d0e75 helics: Add version 3.3.0 (#32682)
Co-authored-by: github-actions[bot] <github-actions[bot]@users.noreply.github.com>
Co-authored-by: Ryan Mast <3969255+nightlark@users.noreply.github.com>
2022-09-20 11:53:59 -06:00
Stephanie Labasan Brink
2f796e1119 variorum: new versions 0.5 and 0.6, remove log option (#32731) 2022-09-20 11:46:04 -06:00
iarspider
ac459df2b6 Add fixed version 0.7.0 to cpu-features (#32726)
* Add fixed version 0.7.0 to cpu-features
* [@spackbot] updating style on behalf of iarspider

Co-authored-by: iarspider <iarspider@users.noreply.github.com>
2022-09-20 10:40:39 -07:00
Joel Falcou
d8e566d554 Update EVE to 2022.09 (#32729) 2022-09-20 10:35:39 -07:00
Luke Diorio-Toth
cc0e7c87c1 new version (py-multiqc v1.13) + new package (py-rich-click) (#32719)
* started updating multiqc package

* working now

* added py-rich-click

* fixed style

* changed py-matlibplot versions

Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>

* changed py-networkx versions

Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>

* changed py-coloredlogs versions

Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>

* changed python versions

Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>

* changed py-markdown versions

Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>

* changed py-pyyaml requirement

Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>

* changed py-requests requirements

Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>

* changed py-spectra requirements

Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>

Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>
2022-09-20 11:14:01 -06:00
Manuela Kuhn
757a2db741 py-python-gitlab: add 3.9.0 (#32723) 2022-09-20 10:41:53 -06:00
Manuela Kuhn
8409ec0f21 py-annexremote: add 1.6.0 (#32725) 2022-09-20 10:06:03 -06:00
Manuela Kuhn
0d3a4d799a py-pybids: add 0.15.3 (#32722) 2022-09-20 11:03:33 -05:00
Manuela Kuhn
578d06a86a py-nibabel: add 4.0.2 (#32721) 2022-09-20 11:01:06 -05:00
dependabot[bot]
e656b4659a build(deps): bump codecov/codecov-action from 3.1.0 to 3.1.1 (#32717)
Bumps [codecov/codecov-action](https://github.com/codecov/codecov-action) from 3.1.0 to 3.1.1.
- [Release notes](https://github.com/codecov/codecov-action/releases)
- [Changelog](https://github.com/codecov/codecov-action/blob/master/CHANGELOG.md)
- [Commits](81cd2dc814...d9f34f8cd5)

---
updated-dependencies:
- dependency-name: codecov/codecov-action
  dependency-type: direct:production
  update-type: version-update:semver-patch
...

Signed-off-by: dependabot[bot] <support@github.com>

Signed-off-by: dependabot[bot] <support@github.com>
Co-authored-by: dependabot[bot] <49699333+dependabot[bot]@users.noreply.github.com>
2022-09-20 14:03:47 +02:00
natshineman
3b273e263b osu-micro-benchmarks: add v6.1 (#32692) 2022-09-20 12:57:59 +02:00
Jim Galarowicz
24245be85a must: fix incorrect cmake argument (#32671) 2022-09-20 12:45:15 +02:00
Massimiliano Culpo
71434d8b9d intel-oneapi-itac: remove UTF-8 character in docstring
This character causes random failures in CI for Python 2.7
2022-09-20 11:02:10 +02:00
iarspider
2518a55105 Add checksum for py-nbconvert 6.5.1 (#32646) 2022-09-20 09:31:48 +02:00
Jen Herting
637a95c67f py-h5py: add v3.7.0 (#32578) 2022-09-20 09:30:36 +02:00
Manuela Kuhn
7e00852278 py-bids-validator: add 1.9.8 (#32712) 2022-09-20 01:05:45 -06:00
Gregory Lee
9b9691233a stat: add v4.2.1 (#32691) 2022-09-20 08:43:36 +02:00
Sreenivasa Murthy Kolam
0405ed6e9b Bump up the version for rocm-5.2.1 release (#32195)
* Bump up the version for rocm-5.2.1-initial commit
* Bump up the version for rocm-5.2.1 release
* Bump up the version for rocm-5.2.1 release
* correct the PROF_API_HEADER_PATH to include
* Bump up the version of rocm-openmp-extras for rocm-5.2.1 release
* bump up the version of rocwmma for 5.2.1
2022-09-19 21:13:38 -06:00
Jim Edwards
60997a7bc3 add pio2_5_9 to spack package (#32716) 2022-09-19 15:45:40 -06:00
Adam J. Stewart
5479f26aa6 py-pandas: add v1.5.0 (#32714) 2022-09-19 15:09:52 -06:00
kent-cheung-arm
8a7343f97b Added variant to ensure Arm Forge license acceptance (#32635)
* Added variant to ensure Arm Forge license acceptance
* Update var/spack/repos/builtin/packages/arm-forge/package.py

Co-authored-by: Tamara Dahlgren <35777542+tldahlgren@users.noreply.github.com>
2022-09-19 13:45:43 -07:00
Wouter Deconinck
5b26df8f64 imagemagick: new variant ghostscript (#32450)
* imagemagick: new variant ghostscript

Ghostscript adds about 75 dependencies to an installation of
imagemagick (97 without, 172 with Ghostscript). This adds a
variant (defaulting to true for backward compatibility) that
allows users to turn off Ghostscript support.

* imagemagick: be explicit when `--with-gslib`

* imagemagick: fix suggestion fail

* imagemagick: use spec.prefix.share.font

* imagemagick: default ghostscript false

* imagemagick: no need for join_path anymore

Co-authored-by: Tamara Dahlgren <35777542+tldahlgren@users.noreply.github.com>

Co-authored-by: Tamara Dahlgren <35777542+tldahlgren@users.noreply.github.com>
2022-09-19 15:41:11 -05:00
Adam J. Stewart
83e66ce03e Deprecate Python 2 support (#32615)
This PR deprecates using Spack to install [EOL Python versions](https://endoflife.date/python), including Python 2.7, 3.1–3.6. It also deprecates running Spack with Python 2.7. Going forward, we expect Spack to have the following Python support timeline.

### Running Spack

* Spack 0.18 (spring 2022): Python 2.7, 3.5–3.10
* Spack 0.19 (fall 2022): Python 2.7 (deprecated), 3.6–3.11
* Spack 0.20 (spring 2023): Python 3.6–3.11

### Building with Spack

* Spack 0.18 (spring 2022): Python 2.7, 3.1–3.10
* Spack 0.19 (fall 2022): Python 2.7, 3.1–3.6 (deprecated), 3.7–3.11
* Spack 0.20 (spring 2023): Python 3.7–3.11

This is a reboot of #28003. See #31824 for a detailed discussion of the motivation for this PR.
If you have concerns about this change, please comment on #31824.
2022-09-19 13:34:38 -07:00
Manuela Kuhn
cc78d5db36 py-datalad: add 0.17.5 (#32676)
* py-datalad: add 0.17.5

* Fix description of py-types-urllib3

* Update var/spack/repos/builtin/packages/py-datalad/package.py

Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>

* Update var/spack/repos/builtin/packages/py-datalad/package.py

Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>

* Add colorama dependency for windows

* Fix importlib-metadata dependency

* Update var/spack/repos/builtin/packages/py-pytest/package.py

Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>

* Update var/spack/repos/builtin/packages/py-pytest/package.py

Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>

* Update var/spack/repos/builtin/packages/py-pytest/package.py

Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>

* Use conflict to avoid dependency duplication

Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>
2022-09-19 15:30:34 -05:00
rsanthanam-amd
8f8205af88 NCCL should not be dependent on ROCm builds since RCCL is used instead. (#32461)
Allow the nccl flag to be specified even for ROCm builds so that NCCL kernels are included in the build.

In this case the NCCL kernels will use RCCL as the backend implementation.
2022-09-19 15:02:02 -05:00
Stephen Sachs
13d870157f Adding intel-oneapi-itac package (#32658)
* Adding intel-oneapi-itac package
* Make black happy
* add rscohn2 as maintainer
* black prefers double quotes

Co-authored-by: Stephen Sachs <stesachs@amazon.com>
Co-authored-by: Robert Cohn <rscohn2@gmail.com>
2022-09-19 12:44:32 -07:00
Terry Cojean
5d42185698 Ginkgo: improve smoke testing (#32647)
* Ginkgo: improve smoke testing
* Fix style issues
* Pass `self.compiler.{cc,cxx}` to the smoke tests
2022-09-19 12:37:34 -07:00
Ashwin Kumar
3ffc7f4281 patch etsf-io tests (#32666)
(Patches from meisam.tabriz@mpcdf.mpg.de and smoke tests from @fangohr)
2022-09-19 12:31:59 -07:00
Wouter Deconinck
7d250c4bea root: determine_variants cxxstd=20 support (#32673)
This is somewhat ahead of reality, but once/when external ROOT installs with cxxstd=20 are common, we will need this to pick up the correct variant.
2022-09-19 11:32:47 -07:00
snehring
edee67d96f fasttree: updating to 2.1.11 (#32683) 2022-09-19 11:07:51 -07:00
Massimiliano Culpo
fc1e25c5e1 Don't run bootstrap on package only PRs (#32689)
* Don't run bootstrap on package only PRs

* Run bootstrap tests when ci.yaml is modified

* Test a package only PR

* Revert "Test a package only PR"

This reverts commit af96b1af60b0c31efcc9a2875ffb1a809ef97241.
2022-09-19 10:59:29 -07:00
Adam J. Stewart
bb071d03ba py-sip: add v6.6.2 (#32695)
* py-sip: add v6.6.2

* Fix python deptype
2022-09-19 10:56:47 -07:00
Wouter Deconinck
0298823e28 edm4hep: allow variant cxxstd 20, sync with podio (#32698)
Now that `podio` can support `cxxstd` variants 17 and 20, we can allow `edm4hep` to use `cxxstd=20` as well, but must ensure that `edm4hep` uses the same `cxxstd` variant as `podio`. Solution as in `celeritas`.
2022-09-19 10:51:22 -07:00
Laurent Aphecetche
51d2c05022 geant4-vmc: add version 6-1-p1 (#32704) 2022-09-19 10:12:02 -07:00
iarspider
3762e7319d Fix benchmark recipe after branch name was changed (#32708) 2022-09-19 10:08:30 -07:00
Wouter Deconinck
2f19826470 geant4: new bugfix version 11.0.3 (#32700)
Geant4 has a new bugfix version 11.0 patch-03, [release notes](https://geant4-data.web.cern.ch/ReleaseNotes/Patch.11.0-3.txt). No build system changes.
2022-09-19 13:11:31 +01:00
Manuela Kuhn
0f9cd73f58 py-neurora: add 1.1.6.8 (#32684) 2022-09-19 04:41:41 -06:00
Manuela Kuhn
17c16ac2fc py-pydicom: add 2.3.0 (#32681) 2022-09-19 04:25:35 -06:00
John W. Parent
0376a62458 Attempt at patching phist find mpi heuristic (#32688)
for updated phist version
2022-09-18 11:18:28 -05:00
Manuela Kuhn
d4c13b0f8f Add skip_import to PythonPackage and use it in py-nilearn (#32664)
* Add skip_import to PythonPackage and use it in py-nilearn

* Fix dependencies
2022-09-17 23:02:30 +00:00
Paul Kuberry
2c7c749986 xyce: Change preferred to last numeric version (#32679)
- Also handles new constraints on Trilinos version
2022-09-17 13:57:40 -06:00
Robert Cohn
9e0755ca3a [intel-oneapi-compilers] fix CC/CXX (#32677) 2022-09-16 14:16:06 -04:00