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Author SHA1 Message Date
Ken Raffenetti
e88396e5ed yaksa: Add support for cuda_arch variants (#30471) 2022-05-05 08:12:21 -07:00
Harmen Stoppels
dcd2f8a4ed ucx: overhaul package recipe (#30215) 
- hyphens to underscore in variant names (e.g. `~ib_hw_tm` instead of `~ib-hw-tm`)
- disable docs, disable go, drop the unused `doc` variant
- `+static +shared` => `libs=static,shared`
- `vfs` support (add libfuse@3: dep)
- fix `backtrace_detail` for UCX 1.12+ (`--enable-backtrace-detail` => `--with-bfd`)
- group variants and sort
 2022-05-05 15:07:34 +02:00
Valentin Volkl
381ec8abac baurmc: add new package (#30245) 
Co-authored-by: Massimiliano Culpo <massimiliano.culpo@gmail.com>
 2022-05-05 13:30:45 +02:00
Jennifer Green
fd6d226524 git: adding subtree support, post-install step, reordered deps (#30400) 2022-05-05 11:08:51 +02:00
Adam J. Stewart
cef9245ee1 LAPACK: add API compatibility versions (#29828) 2022-05-05 10:38:20 +02:00
dlkuehn
24fecdc738 rnaz: add version 2.1.1 and git repository to newest version. (#30349) 
Co-authored-by: David Kuehn <las_dkuehn@iastate.edu>
Co-authored-by: Massimiliano Culpo <massimiliano.culpo@gmail.com>
 2022-05-05 10:32:41 +02:00
snehring
4a228055e2 trimmomatic: adding more flexible java dep (#30488) 2022-05-05 10:21:20 +02:00
Wouter Deconinck
17ede26cea flatbufffers: patches are in v2.0.0 (#30492) 2022-05-05 10:14:10 +02:00
SXS Bot
8bcccbeac7 spectre: add v2022.05.05 (#30493) 
Co-authored-by: sxs-bot <sxs-bot@users.noreply.github.com>
 2022-05-05 09:49:25 +02:00
Greg Becker
e6346eb033 spack external find: add search path customization (#30479) 2022-05-05 08:59:44 +02:00
Seth R. Johnson
a5d06325e7 qt: fix ~opengl and use_spack_dep (#30487) 2022-05-04 22:41:37 -04:00
Dan Bonachea
9bb23a7f46 UPC++: minor packaging improvements (#30482) 
* upcxx: Add `spack external find` support

* upcxx: Minor tweaks to Shasta support
 2022-05-04 15:27:21 -07:00
Andrea Valenzuela
5a434cb840 Add scitokens-cpp recipe and also as a variant for xrootd (#30362) 
* Add scitokens-cpp recipe

* Add scitokens-cpp variant in xrootd

* Fix typo

* Fix flake8 style errors

* Update license date

Co-authored-by: Tamara Dahlgren <35777542+tldahlgren@users.noreply.github.com>

Co-authored-by: Tamara Dahlgren <35777542+tldahlgren@users.noreply.github.com>
 2022-05-04 13:03:50 -07:00
iarspider
0be5dea13f Fix professor recipe (#30002) 
* [WIP] Cleanup professor dependencies

* Add dependency on ROOT
* Remove direct dependency on wxwidgets
    * `prof-I` tool requires matplotlib with wxwidgets backend, made that optional

* Update package.py

* Update package.py (#38)

* Update package.py

* Update package.py
 2022-05-04 11:19:43 -07:00
David
b6f2a70f7b Update gtk-doc depends for tce findings (#30337) 
gtk-doc can call pkg-config when used at runtime, so pkgconfig needs
to be a runtime requirement.

itstool needs to be a build-time requirement.
 2022-05-04 11:17:34 -07:00
Olivier Cessenat
0d3d1ea7d0 gxsview: vtk9 no longer builds libvtkjpeg... (#30340) 2022-05-04 11:12:49 -07:00
Andrea Valenzuela
39c4a66e5b Add checksum for py-prompt-toolkit@3.0.29 (#30330) 
Co-authored-by: aandvalenzuela <andrea.valenzuela.ramirez@cern.ch>
 2022-05-04 11:53:53 -06:00
Carlos Bederián
0bd0ba53a3 curl: tls=mbedtls requires fPIC (#30447) 2022-05-04 10:53:33 -07:00
snehring
e24373f262 gatk: updating and expanding java dependency (#30476) 2022-05-04 17:51:44 +00:00
Adam J. Stewart
b7f33fb393 Python package: add backup BINDIR setting (#30408) 2022-05-04 10:50:18 -07:00
Chuck Atkins
250d5d2c00 qt: Assimp dependency specificationa is more nuanced (#30460) 
libassimp has been a dependency for all of 5.x but expressing that has
varied significantly throughout the 5.x lifecycle:

  v5.0:  qt3d uses internal-only libassimp
  v5.5:  external-only libassimp
  v5.6:  either internal or external libassimp via autodetection
  v5.9:  user-selectable internal-vs-external via -assimp
  v5.14: additional qtquick3d module uses -assimp
  v5.15: qtquick3d switches to the -quick3d-assimp option
    * current bug where the incorrect target is setup
 2022-05-04 13:30:15 -04:00
Sergey Kosukhin
8b0f6187e0 bugfix: fix filter_compiler_wrappers for Cray compiler (#29786) 2022-05-04 10:13:12 -07:00
Adam J. Stewart
8bf988abb9 GDAL: add v3.4.3 (#30474) 2022-05-04 16:34:17 +00:00
Bitllion
aab7dcaad9 add package: abacus (#30416) 
* add pacakge: abacus

* rename

* fix some style bugs

* update package:abacus

* fix some style bugs

* format code

* Delete a line of useless comments

* updatee abacus
 2022-05-04 09:29:08 -07:00
Mikael Simberg
5b68fa1ecb Add mimalloc package with use in HPX and pika (#30457) 
* Add mimalloc package

* Add mimalloc as allocator option to pika

* Add mimalloc as allocator option to hpx

* Set git property globally instead of per-version in pika, hpx, and mimalloc packages

Co-authored-by: Mikael Simberg <mikael.simberg@iki.if>
 2022-05-04 09:19:15 -07:00
acastanedam
4d03a2768e gpi-2_fix_deps: setup 'gawk' and 'sed' dependencies (#29740) 
Strictly, `sed` is a `build` and `run` dependency in all gpi-2
versions, whereas `gawk` is a `run` (`build` and `run`) dependency for
gpi-2 versions greater or equal (less) than 1.4.0
 2022-05-04 09:14:21 -07:00
Scott Wittenburg
6b6147d5a0 gitlab: Remove temporary storage url from all stacks (#29949) 
Gitlab pipelines run for spack already have other S3 storage locations
configured for storage of binaries, so this PR removes the redundant
per-pipeline mirror.  As a result, the "cleanup" jobs will no longer be
generated at the end of each pipeline, removing one possible point of
pipeline failure.
 2022-05-04 09:18:47 -06:00
Andrea Valenzuela
6702e87ee4 Add checksum for version 1.1.13 and update dependencies (#30470) 2022-05-04 10:08:43 -05:00
fpruvost
7ad5ca2cc3 chameleon: add maintainers information (#30472) 2022-05-04 08:57:44 -06:00
Auriane R
2418cfb79b pika: Add 0.4.0 release (#30469) 2022-05-04 16:29:30 +02:00
Ross Miller
9486c76d70 Use gccgo to bootstrap go on aarch64 (#30350) 
The go-bootstrap package doesn't work on aarch64 platforms, so the only way
to build Go is to use gccgo.

Also, some versions of gccgo have a bug that prevents them from compiling
go (see golang/go#47771), so this patch limits gcc to versions newer than
10.4.0 or 11.3.0.

Co-authored-by: Massimiliano Culpo <massimiliano.culpo@gmail.com>
 2022-05-04 16:16:53 +02:00
fpruvost
dc99fe98b9 chameleon: add new package (#30368) 2022-05-04 08:09:54 -06:00
Andrea Valenzuela
cb97b25646 Add checksum for py-plac@1.3.5 (#30327) 
Co-authored-by: aandvalenzuela <andrea.valenzuela.ramirez@cern.ch>
 2022-05-04 08:06:11 -06:00
Andrea Valenzuela
a84593a510 Add checksum for py-networkx@2.7.1 and fix python dependency (#30326) 
Co-authored-by: aandvalenzuela <andrea.valenzuela.ramirez@cern.ch>
 2022-05-04 08:05:51 -06:00
Paul Ferrell
2f6556ea82 mesa: intel needs c99 standard specified under intel. (#30334) 2022-05-04 14:21:25 +02:00
snehring
b4213b2c60 maq: adding perl dep, addressing gcc errors (#30312) 2022-05-04 14:07:02 +02:00
lpoirel
e378d96d15 namd: place an upper bound on the charmpp dependency version (#30397) 
Co-authored-by: Massimiliano Culpo <massimiliano.culpo@gmail.com>
 2022-05-04 13:58:25 +02:00
Axel Huebl
715686f0ec WarpX: add v22.05 (#30467) 
Update `warpx` & `py-warpx` to the latest release, `22.05`.
 2022-05-04 00:57:42 -06:00
snehring
d0fdaf6d03 igv: changing to 'all platforms' version. Adding igvtools variant. (#30379) 2022-05-04 08:29:06 +02:00
Adam J. Stewart
b8ebaa0813 py-shapely: add v1.8.2 (#30466) 2022-05-04 07:43:52 +02:00
Massimiliano Culpo
5c7d6c6e10 Remove deprecated "--run-tests" option of "spack install" (#30461) 2022-05-04 07:43:29 +02:00
eugeneswalker
96f9a1d88b boost: fix v1.78 build with oneapi (#30463) 2022-05-03 23:29:37 -06:00
Carlos Bederián
f5eb9fb501 autodock-vina: add versions up to v1.2.3, fixes (#30443) 
* C++ package, use spack_cxx
* download from github, add 1.2.x versions
* remove patches already present in 1.1.2-boost-new release
* specify boost dependencies
 2022-05-04 06:24:15 +02:00
Paul Ferrell
dd8f533e97 paraview: add LANL/TCE used variants for Paraview (#30336) 
- Added +eyedomelighting
- Added +pagosa
- Added +fortran
- Added pandas dependency and min version
 2022-05-04 06:18:35 +02:00
Glenn Johnson
bab41de538 ncl: constrain hdf5 dependency to version 1.10 (#29607) 2022-05-03 23:11:34 -05:00
Harsh Bhatia
17c1808ef7 new package: py-pytaridx (#30444) 
* new package: pytaridx

* fixed copyright year

* Update git link

Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>

* added type in python depends

* added pypi link

* Update package.py

* Update package.py

Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>
 2022-05-03 23:10:49 -05:00
snehring
157ee3458f ea-utils: new version, cleanup, and newer gcc compat (#30204) 2022-05-04 06:06:59 +02:00
dependabot[bot]
3ce8bff22e build(deps): bump docker/setup-buildx-action from 1.6.0 to 1.7.0 (#30387) 
Bumps [docker/setup-buildx-action](https://github.com/docker/setup-buildx-action) from 1.6.0 to 1.7.0.
- [Release notes](https://github.com/docker/setup-buildx-action/releases)
- [Commits](94ab11c41e...f211e3e9de)

---
updated-dependencies:
- dependency-name: docker/setup-buildx-action
  dependency-type: direct:production
  update-type: version-update:semver-minor
...

Signed-off-by: dependabot[bot] <support@github.com>

Co-authored-by: dependabot[bot] <49699333+dependabot[bot]@users.noreply.github.com>
 2022-05-04 06:04:38 +02:00
Ethan Stam
281165693a ParaView: let paraview build its own verdict tpl (#30332) 2022-05-04 06:03:52 +02:00
eugeneswalker
f8653dfb9b mesa@22: gallium-xlib -> xlib (#30465) 2022-05-04 05:53:09 +02:00