zhangyiss/spack
1
0
Fork 0
Code Issues Pull Requests Actions Packages Projects Releases Wiki Activity
31,212 Commits 246 Branches 186 Tags
e66888511f175ed74edd92a2938953f5330ceccc
Commit Graph

31212 Commits

This Branch
This Branch
All Branches
Author SHA1 Message Date
Manuela Kuhn
f63fb2f521 py-twine: add 4.0.1, py-readme-renderer: add 37.3 (#34203) 
* py-twine: add 4.0.1

* Remove py-setuptools as run dependency
 2022-12-01 12:29:10 -06:00
Annop Wongwathanarat
dfa00f5a8d acfl: add post-installation check by running examples (#34172) 2022-12-01 09:47:59 -07:00
Alec Scott
6602780657 Add py-python-lsp-server and dependencies (#34149) 
* Add py-python-lsp-server and dependencies

* Update var/spack/repos/builtin/packages/py-python-lsp-server/package.py

Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>

* Relax version range constraints on py-python-lsp-jsonrpc and add missing dep

* Add runtime dependency flag to setuptools dependencies

* Remove unused python@3.6: dependency and move setuptools-scm to build dep only

Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>
 2022-12-01 09:34:49 -07:00
iarspider
8420c610fa gnuplot: make readline optional (#34179) 
* gnuplot: make readline optional
* Update package.py

Co-authored-by: iarspider <iarspider@users.noreply.github.com>
 2022-12-01 09:11:14 -07:00
Greg Becker
b139cab687 conditional variant values: allow boolean (#33939) 2022-12-01 08:25:57 +01:00
Adam J. Stewart
99fcc57607 py-scipy: hardcode to use blis.pc (#34171) 2022-11-30 12:29:20 -08:00
Larry Knox
5a394d37b7 Add HDF5 version 1.13.3. (#34165) 
* Add HDF5 version 1.13.3.
* Remove maintainers no longer with The HDFGroup.
* Fix indentation.
 2022-11-30 11:23:38 -08:00
Loïc Pottier
472074cb7c redis-plus-plus: newer version and added TLS support (#34197) 
Signed-off-by: Loïc Pottier <pottier1@llnl.gov>
 2022-11-30 11:18:47 -08:00
Adam J. Stewart
45c8d7f457 py-segmentation-models-pytorch: add v0.3.1 (#34214) 2022-11-30 10:58:27 -08:00
Edward Hartnett
dce1f01f1a new w3emc version (#34219) 
* updated version of w3emc package
* fixed sha
 2022-11-30 10:54:45 -08:00
Sam Grayson
03cc83bc67 Add py-yt 4.x versions (#30418) 
* Add py-yt 4.x versions

* Fix spelling

* Add yt dependencies

* Refine cython dependency

* Tweak depends_on for py-yt 4.x

* Apply suggestions from code review

Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>

* Fix comments from code review

* Fix formatting

* Fix stuff

* Fix constraints

* Update py-yt to 4.1.2

* Updated packages

* Fix py-tomli checksum

* Remove `expand` from `py-tomli/package.py`

* Respond to Adam's comments

* Update checksums

* Update checksusm

* Respond to comments

Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>
 2022-11-30 12:03:26 -06:00
eugeneswalker
f452741e3d e4s ci: use 2022-12-01 runner images (#34212) 2022-11-30 09:52:30 -08:00
eugeneswalker
99b68e646d e4s ci: hpx: set max_cpu_count=512 (#33977) 2022-11-30 09:16:57 -08:00
iarspider
f78c8265f4 Add checksum for py-kiwisolver 1.4.4 (#34121) 2022-11-30 09:18:18 -06:00
iarspider
5d3efbba14 Fix recipe for py-onnx-runtime (#34130) 
* Fix recipe

* Update package.py

* Update recipe following review

* Update var/spack/repos/builtin/packages/py-onnx-runtime/package.py

Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>

* remove unused imports

* Update package.py

Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>
 2022-11-30 09:17:22 -06:00
Sajid Ali
7423f52cd3 PMIx: enable python bindings (#34107) 2022-11-30 15:55:24 +01:00
Massimiliano Culpo
43d93f7773 Deduplicate code to propagate module changes across MRO (#34157) 2022-11-30 11:10:42 +01:00
Harmen Stoppels
f8dec3e87f Single pass text replacement (#34180) 2022-11-30 10:21:51 +01:00
Manuela Kuhn
ef06b9db5b py-bidscoin, py-multiecho: add new packages (#34168) 2022-11-29 17:37:50 -07:00
Todd Gamblin
c64c9649be debug: move "nonexistent config path" message to much higher verbosity level (#34201) 
We currently report that searched config paths don't exist at debug level 1, which
clutters the output quite a bit:

```console
> spack -d solve --fresh --show asp hdf5 > hdf5.lp
==> [2022-11-29-14:18:21.035133] Skipping nonexistent config path /Users/gamblin2/src/spack/etc/spack/darwin/concretizer.yaml
==> [2022-11-29-14:18:21.035151] Skipping nonexistent config path /Users/gamblin2/.spack/concretizer.yaml
==> [2022-11-29-14:18:21.035169] Skipping nonexistent config path /Users/gamblin2/.spack/darwin/concretizer.yaml
==> [2022-11-29-14:18:21.035238] Reading config from file /Users/gamblin2/src/spack/etc/spack/defaults/repos.yaml
==> [2022-11-29-14:18:21.035996] Skipping nonexistent config path /Users/gamblin2/src/spack/etc/spack/defaults/darwin/repos.yaml
==> [2022-11-29-14:18:21.036021] Skipping nonexistent config path /etc/spack/repos.yaml
==> [2022-11-29-14:18:21.036039] Skipping nonexistent config path /etc/spack/darwin/repos.yaml
==> [2022-11-29-14:18:21.036057] Skipping nonexistent config path /Users/gamblin2/src/spack/etc/spack/repos.yaml
==> [2022-11-29-14:18:21.036072] Skipping nonexistent config path /Users/gamblin2/src/spack/etc/spack/darwin/repos.yaml
==> [2022-11-29-14:18:21.036088] Skipping nonexistent config path /Users/gamblin2/.spack/repos.yaml
==> [2022-11-29-14:18:21.036105] Skipping nonexistent config path /Users/gamblin2/.spack/darwin/repos.yaml
==> [2022-11-29-14:18:21.071828] Reading config from file /Users/gamblin2/src/spack/etc/spack/defaults/config.yaml
==> [2022-11-29-14:18:21.081628] Skipping nonexistent config path /Users/gamblin2/src/spack/etc/spack/defaults/darwin/config.yaml
==> [2022-11-29-14:18:21.081669] Skipping nonexistent config path /etc/spack/config.yaml
==> [2022-11-29-14:18:21.081692] Skipping nonexistent config path /etc/spack/darwin/config.yaml
==> [2022-11-29-14:18:21.081712] Skipping nonexistent config path /Users/gamblin2/src/spack/etc/spack/config.yaml
==> [2022-11-29-14:18:21.081731] Skipping nonexistent config path /Users/gamblin2/src/spack/etc/spack/darwin/config.yaml
==> [2022-11-29-14:18:21.081748] Skipping nonexistent config path /Users/gamblin2/.spack/config.yaml
==> [2022-11-29-14:18:21.081764] Skipping nonexistent config path /Users/gamblin2/.spack/darwin/config.yaml
==> [2022-11-29-14:18:21.134909] Reading config from file /Users/gamblin2/src/spack/etc/spack/defaults/packages.yaml
==> [2022-11-29-14:18:21.148695] Reading config from file /Users/gamblin2/src/spack/etc/spack/defaults/darwin/packages.yaml
==> [2022-11-29-14:18:21.152555] Skipping nonexistent config path /etc/spack/packages.yaml
==> [2022-11-29-14:18:21.152582] Skipping nonexistent config path /etc/spack/darwin/packages.yaml
==> [2022-11-29-14:18:21.152601] Skipping nonexistent config path /Users/gamblin2/src/spack/etc/spack/packages.yaml
==> [2022-11-29-14:18:21.152620] Skipping nonexistent config path /Users/gamblin2/src/spack/etc/spack/darwin/packages.yaml
==> [2022-11-29-14:18:21.152637] Skipping nonexistent config path /Users/gamblin2/.spack/packages.yaml
==> [2022-11-29-14:18:21.152654] Skipping nonexistent config path /Users/gamblin2/.spack/darwin/packages.yaml
==> [2022-11-29-14:18:21.853915] Skipping nonexistent config path /Users/gamblin2/src/spack/etc/spack/defaults/compilers.yaml
==> [2022-11-29-14:18:21.853962] Skipping nonexistent config path /Users/gamblin2/src/spack/etc/spack/defaults/darwin/compilers.yaml
==> [2022-11-29-14:18:21.853987] Skipping nonexistent config path /etc/spack/compilers.yaml
==> [2022-11-29-14:18:21.854007] Skipping nonexistent config path /etc/spack/darwin/compilers.yaml
==> [2022-11-29-14:18:21.854025] Skipping nonexistent config path /Users/gamblin2/src/spack/etc/spack/compilers.yaml
==> [2022-11-29-14:18:21.854043] Skipping nonexistent config path /Users/gamblin2/src/spack/etc/spack/darwin/compilers.yaml
==> [2022-11-29-14:18:21.854060] Skipping nonexistent config path /Users/gamblin2/.spack/compilers.yaml
==> [2022-11-29-14:18:21.854093] Reading config from file /Users/gamblin2/.spack/darwin/compilers.yaml
```

It is very rare that I want to know this much information about config search, so I've
moved this to level 3. Now at level 1, we can see much more clearly what configs were
actually found:

```console
> spack -d solve --fresh --show asp hdf5 > hdf5.lp
==> [2022-11-29-14:19:04.035457] Imported solve from built-in commands
==> [2022-11-29-14:19:04.035818] Imported solve from built-in commands
==> [2022-11-29-14:19:04.037626] Reading config from file /Users/gamblin2/src/spack/etc/spack/defaults/concretizer.yaml
==> [2022-11-29-14:19:04.040033] Reading config from file /Users/gamblin2/src/spack/etc/spack/defaults/repos.yaml
==> [2022-11-29-14:19:04.080852] Reading config from file /Users/gamblin2/src/spack/etc/spack/defaults/config.yaml
==> [2022-11-29-14:19:04.133241] Reading config from file /Users/gamblin2/src/spack/etc/spack/defaults/packages.yaml
==> [2022-11-29-14:19:04.147175] Reading config from file /Users/gamblin2/src/spack/etc/spack/defaults/darwin/packages.yaml
==> [2022-11-29-14:19:05.157896] Reading config from file /Users/gamblin2/.spack/darwin/compilers.yaml
```

You can still get the old messages with `spack -ddd` (to activate debug level 3).
 2022-11-29 16:17:13 -08:00
Paul R. C. Kent
2c6b52f137 add 15.0.5, 15.0.6 (#34194) 2022-11-29 15:26:13 -08:00
kwryankrattiger
33422acef0 CI: Update Data and Vis SDK Stack (#34009) 
* CI: Update Data and Vis SDK Stack

* Update image to match target deployments (E4S)
* Enable all packages
* Test supported variants of ParaView and VisIt

* Sensei: Update Python hint for newer cmake

* Sensei: add Python3 hint
 2022-11-29 14:49:55 -07:00
Stephen Sachs
428f635142 icc@2021.6.0 does not support gcc@12 headers (#34191) 
Error message:
```
/shared/spack/opt/spack/linux-amzn2-x86_64_v3/gcc-7.3.1/gcc-12.2.0-4tairupdxg2tg2yhvjdlbs7xbd7wudl3/bin/../include/c++/12.2.0/bits/random.h(104): error: expected a declaration
{ extension using type = unsigned __int128; };
^
```

Co-authored-by: Stephen Sachs <stesachs@amazon.com>
 2022-11-29 14:36:48 -05:00
kwryankrattiger
c6c74e98ff Dav sdk catalyst (#34010) 
* SDK: Add Catalyst 1 and 2 support to the SDK

* LibCatalyst: Remove unused python3 variant from package
 2022-11-29 11:28:32 -06:00
Valentin Volkl
d9b438ec76 evtgen: add v02.02.00 (#34187) 
* evtgen: add v02.02.00
* format
 2022-11-29 09:54:14 -07:00
Cristian Le
c6ee30497c Fix libxc cflag (#34000) 
Using standard c99 should not be specific to intel compilers.
 2022-11-29 13:45:28 +01:00
Loïc Pottier
1270ae1526 hiredis: updated package definition to use CMake (#33949) 2022-11-29 13:44:50 +01:00
psakievich
d15fead30c Add maintainer to Exawind stack and Trilinos (#34174) 
* Add maintainer to Nalu-Wind and Trilinos

* Add to trilinos

* Exawind too

* amr-wind too
 2022-11-28 17:23:17 -08:00
Valentin Volkl
23aaaf2d28 genfit: add v02-00-01 (#34159) 2022-11-28 17:09:47 -08:00
Hans Fangohr
56f9c76394 fix typo in path for sanity check (#34117) 
- typo breaks install
 2022-11-28 16:49:57 -07:00
Sam Grayson
49cda811fc Add new version of snakemake (#34041) 
* Add new version of snakemake

* Add myself as a maintainer

* py-retry -> py-reretry

* Added snakemake variants for storage systems

* Updated comments

* Responded to Adam's comments

* Fixed spack style

* Add build/run dependency types
 2022-11-28 15:10:10 -07:00
Benjamin Meyers
a97312535a New package: py-statmorph (#34158) 
* New package py-statmorph w/ dependecies. Add py-astropy@5.1

* [@spackbot] updating style on behalf of meyersbs

* [py-statmorph,py-astropy,py-pyerfa] minor fixes
 2022-11-28 15:46:10 -06:00
Benjamin Meyers
a0180ef741 New package: py-stui (#34156) 
* New package py-stui

* [py-stui] add maintainer

* [@spackbot] updating style on behalf of meyersbs

* [py-stui] fix deps
 2022-11-28 15:45:40 -06:00
iarspider
d640a573a8 Add checksum for py-rsa 4.9 (#34115) 
* Add checksum for py-rsa 4.9

* Update package.py

* Update var/spack/repos/builtin/packages/py-rsa/package.py

Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>

Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>
 2022-11-28 14:10:21 -07:00
Cameron Smith
b3679406d0 omegah: new scorec version, fix cuda flags (#34169) 2022-11-28 13:03:27 -08:00
eugeneswalker
587488882a e4s ci: add hdf5-vol-async; remove expired comments (#34110) 2022-11-28 19:35:42 +00:00
Satish Balay
a17844a367 petsc, py-petsc4py: add 3.18.2 (#34161) 2022-11-28 10:51:48 -08:00
Manuela Kuhn
093a37750c py-bidskit: new package and dcm2niix: add 1.0.20220720 (#34162) 
* py-bidskit: new package and dcm2niix: add 1.0.20220720

* Remove list_url
 2022-11-28 11:05:49 -07:00
iarspider
173cc7e973 Add checksum for py-traitlets 5.3.0 (#34127) 2022-11-28 11:05:35 -07:00
Greg Becker
451e3ff50b warn about removal of deprecated format strings (#34101) 
* warn about removal of deprecated format strings

Co-authored-by: becker33 <becker33@users.noreply.github.com>
 2022-11-28 10:03:49 -08:00
Manuela Kuhn
523c4c2b63 py-dcm2bids: add new package (#34163) 2022-11-28 10:46:04 -07:00
Thomas-Ulrich
35e5a916bc easi: update package, rework impalajit (#34032) 2022-11-28 15:54:21 +01:00
Annop Wongwathanarat
1374577659 acfl: provides blas, lapack, and fftw-api@3 (#34154) 2022-11-28 14:25:32 +01:00
Hector Martinez-Seara
4c017403db texinfo: add v7.0 (#34150) 2022-11-28 06:22:13 -07:00
Massimiliano Culpo
fdfda72371 Use a module-like object to propagate changes in the MRO, when setting build env (#34059) 
This fixes an issue introduced in #32340, which changed the semantics of the "module"
object passed to the "setup_dependent_package" callback.
 2022-11-28 14:18:26 +01:00
Harmen Stoppels
efa1dba9e4 Revert "Revert "gitlab: Add shared PR mirror to places pipelines look for binaries. (#33746)" (#34087)" (#34153) 
This reverts commit 63e4406514.
 2022-11-28 06:06:03 -07:00
Annop Wongwathanarat
2a7ae2a700 armpl-gcc: add post-installation check by running examples (#34086) 2022-11-28 13:55:51 +01:00
Adam J. Stewart
a1b4e1bccd Add type hints to Prefix class (#34135) 2022-11-28 13:49:57 +01:00
Alec Scott
066ec31604 Add restic v0.14.0 (#34148) 2022-11-28 08:39:37 +01:00
Alec Scott
bb1888dbd4 direnv: add v2.32.2 (#34147) 2022-11-27 22:09:53 +01:00