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Author SHA1 Message Date
Massimiliano Culpo
d7297e67a5 Maintenance for the "bootstrap" workflow in CI (#44031) 
Removed a lot of duplication.

Fixed an issue in containers, leading to false negative
 2024-05-07 08:49:53 +02:00
snehring
ee8addf04a neic-finitefault: adding new package and dependencies (#44032) 
* neic-finitefault: adding new package
* py-obspy: adding new package
* py-okada-wrapper: adding new package
* py-pygmt: adding new package
* py-pyrocko: adding new package

---------

Signed-off-by: Shane Nehring <snehring@iastate.edu>
 2024-05-06 15:45:32 -07:00
Jon Rood
fd3cd3a1c6 amr-wind: updates and fixes (#43993) 
* Updates and fixes for AMR-Wind.

* Add versions and update openfast constraints.

* Style.

* Fix version.
 2024-05-06 13:31:29 -06:00
Garth N. Wells
e585aeb883 (py)-fenics-dolfinx: version update (#44002) 
* Update DOLFINx to v0.8
* Fix typo
 2024-05-06 12:11:02 -07:00
James Taliaferro
1f43384db4 Add LSP client extension for Kakoune (#44000) 
* new package: kakoune-lsp
* blacken
* add myself as a maintainer
 2024-05-06 11:18:45 -07:00
Adam J. Stewart
814b328fca py-torchmetrics: add v1.4.0 (#44027) 2024-05-06 10:21:20 -07:00
Harmen Stoppels
125206d44d python: always use a venv (#40773) 
This commit adds a layer of indirection to improve build isolation with 
and without external Python, as well as usability of environment views.

It adds `python-venv` as a dependency to all packages that `extends("python")`, 
which has the following advantages:

1. Build isolation: only `PYTHONPATH` is considered in builds, not 
   user / system packages
2. Stable install layout: fixes the problem on Debian, RHEL and Fedora where 
   external / system python produces `bin/local` subdirs in Spack install prefixes. 
3. Environment views are Python virtual environments (and if you add 
   `py-pip` things like `pip list` work)

Views work whether they're symlink, hardlink or copy type.

This commit additionally makes `spec["python"].command` return 
`spec["python-venv"].command`. The rationale is that packages in repos we do 
not own do not pass the underlying python to the build system, which could still 
result in incorrectly computed install layouts.

Other attributes like `libs`, `headers` should be on `python` anyways and need no change.
 2024-05-06 16:17:35 +02:00
John W. Parent
a081b875b4 proj: patch for modern cmake (#43780) 2024-05-06 16:01:10 +02:00
Harmen Stoppels
a16ee3348b Do not cache indices in Gitlab (#44029) 2024-05-06 15:54:21 +02:00
Massimiliano Culpo
d654d6b1f4 Remove Fedora 37 and 38, Ubuntu 18 from CI (#44006) 2024-05-06 15:51:45 +02:00
Harmen Stoppels
9b4ca0be40 clingo bootstrap: remove 3.12 patch and concretizer workarounds (#44028) 2024-05-06 15:00:41 +02:00
Harmen Stoppels
dc71dcfdc2 bootstrap: lazy bootstrapping of clingo and GnuPG (#44026) 
Currently bootstrapping from source fails because clingo requires gnupg
requires clingo.

This commit stops eager bootstrapping. We don't need `patchelf` nor `gnupg`
generally. They're bootstrapped when needed.
 2024-05-06 14:02:39 +02:00
Greg Becker
1f31c3374c External package detection for compilers (#43464) 
This creates shared infrastructure for compiler packages to implement the 
detailed search capabilities from the `spack compiler find` command for the 
`spack external find` command.

After this commit, `spack compiler find` can be replaced with 
`spack external find --tag compiler`, with the exception of mixed toolchains.
 2024-05-06 10:33:33 +02:00
Massimiliano Culpo
27aeb6e293 Update vendored archspec to v0.2.4 (#44005) 2024-05-06 10:20:56 +02:00
Harmen Stoppels
715214c1a1 spack env create <env>: dir if dir-like (#44024) 
A named env cannot contain `.` and `/`.

So when a user runs `spack env create ./here` do not error but treat it
as `spack env create -d ./here`.

Also fix help string of `spack env create`, which seems to have been
copied from `activate` incorrectly.
 2024-05-06 02:00:23 -06:00
dependabot[bot]
b471d62dbd build(deps): bump black from 24.4.0 to 24.4.2 in /lib/spack/docs (#43878) 
Bumps [black](https://github.com/psf/black) from 24.4.0 to 24.4.2.
- [Release notes](https://github.com/psf/black/releases)
- [Changelog](https://github.com/psf/black/blob/main/CHANGES.md)
- [Commits](https://github.com/psf/black/compare/24.4.0...24.4.2)

---
updated-dependencies:
- dependency-name: black
  dependency-type: direct:production
  update-type: version-update:semver-patch
...

Signed-off-by: dependabot[bot] <support@github.com>
Co-authored-by: dependabot[bot] <49699333+dependabot[bot]@users.noreply.github.com>
 2024-05-06 09:55:43 +02:00
Massimiliano Culpo
a5f62889ca archspec: add v0.2.4 (#44022) 2024-05-06 09:51:01 +02:00
Alec Scott
2a942d98e3 pkgconf: add v2.2.0 (#44008) 2024-05-06 09:31:41 +02:00
Alec Scott
4a4077d4ef rust: add v1.78.0 (#44012) 2024-05-06 09:30:34 +02:00
Alec Scott
c0fcccc232 go: add v1.22.2 (#44013) 2024-05-06 09:30:13 +02:00
Alec Scott
0b2cbfefce ncurses: add v6.5 (#44015) 2024-05-06 09:30:00 +02:00
Massimiliano Culpo
c499514322 libgpg-error: add v1.49 (#44023) 2024-05-06 09:28:31 +02:00
Alec Scott
ae392b5935 pcre2: add v10.43 (#44020) 2024-05-06 09:25:11 +02:00
Alec Scott
62e9bb5d51 libunistring: add v1.2 (#44018) 2024-05-06 09:24:12 +02:00
Alec Scott
6cd948184e libidn2: add v2.3.7 (#44017) 2024-05-06 09:23:50 +02:00
Alec Scott
44ff24f558 openssl: v3.3.0 (#44019) 2024-05-06 09:22:15 +02:00
Alec Scott
c657dfb768 gettext: v0.22.5 (#44014) 2024-05-05 06:57:42 -06:00
Pranav Sivaraman
f2e410d95a lazygit: add v0.41.0 (#43903) 2024-05-04 17:18:30 -06:00
dependabot[bot]
df443a38d6 build(deps): bump actions/checkout from 4.1.2 to 4.1.4 (#43831) 
Bumps [actions/checkout](https://github.com/actions/checkout) from 4.1.2 to 4.1.4.
- [Release notes](https://github.com/actions/checkout/releases)
- [Changelog](https://github.com/actions/checkout/blob/main/CHANGELOG.md)
- [Commits](9bb56186c3...0ad4b8fada)

---
updated-dependencies:
- dependency-name: actions/checkout
  dependency-type: direct:production
  update-type: version-update:semver-patch
...

Signed-off-by: dependabot[bot] <support@github.com>
Co-authored-by: dependabot[bot] <49699333+dependabot[bot]@users.noreply.github.com>
 2024-05-04 15:49:26 -07:00
dependabot[bot]
74fe498cb8 build(deps): bump mypy from 1.9.0 to 1.10.0 in /lib/spack/docs (#43834) 
Bumps [mypy](https://github.com/python/mypy) from 1.9.0 to 1.10.0.
- [Changelog](https://github.com/python/mypy/blob/master/CHANGELOG.md)
- [Commits](https://github.com/python/mypy/compare/1.9.0...v1.10.0)

---
updated-dependencies:
- dependency-name: mypy
  dependency-type: direct:production
  update-type: version-update:semver-minor
...

Signed-off-by: dependabot[bot] <support@github.com>
Co-authored-by: dependabot[bot] <49699333+dependabot[bot]@users.noreply.github.com>
 2024-05-04 15:48:49 -07:00
Carlos Bederián
5f13a48bf2 mesa: add 23.3.6 (#43736) 2024-05-04 15:46:39 -07:00
Jon Rood
c4824f7fd2 ccls: add new versions (#43923) 2024-05-04 15:42:07 -07:00
dependabot[bot]
49a8634584 build(deps): bump codecov/codecov-action from 4.3.0 to 4.3.1 (#43945) 
Bumps [codecov/codecov-action](https://github.com/codecov/codecov-action) from 4.3.0 to 4.3.1.
- [Release notes](https://github.com/codecov/codecov-action/releases)
- [Changelog](https://github.com/codecov/codecov-action/blob/main/CHANGELOG.md)
- [Commits](84508663e9...5ecb98a3c6)

---
updated-dependencies:
- dependency-name: codecov/codecov-action
  dependency-type: direct:production
  update-type: version-update:semver-patch
...

Signed-off-by: dependabot[bot] <support@github.com>
Co-authored-by: dependabot[bot] <49699333+dependabot[bot]@users.noreply.github.com>
 2024-05-04 15:39:42 -07:00
Seth Bromberger
eac5ea869f tmux: add v3.4 and missing yacc build dep (#43975) 2024-05-04 22:33:19 +02:00
Juan Miguel Carceller
f5946c4621 pythia8: Add a gzip variant and filter some compiler wrapper paths (#43807) 
* Add a gzip variant and filter some compiler wrapper paths

* Apply suggestions from code review

Co-authored-by: Wouter Deconinck <wdconinc@gmail.com>

---------

Co-authored-by: jmcarcell <jmcarcell@users.noreply.github.com>
Co-authored-by: Wouter Deconinck <wdconinc@gmail.com>
 2024-05-04 09:33:44 -05:00
Harmen Stoppels
8564ab19c3 fix iconv from libc (#43996) 
* fix iconv from libc

* fix args in glib
develop-2024-05-05 		2024-05-04 10:30:43 +02:00
Scott Wittenburg
aae7a22d39 gitlab: release branch pipelines rebuild what changed (#43990) 2024-05-04 10:11:48 +02:00
eugeneswalker
09cea230b4 e4s-alc: add v1.0.2 (#44001) 2024-05-03 22:24:08 -06:00
wspear
a1f34ec58b Add a gmake dependency for TAU (#43870) 
We discovered a case where the system gmake can get confused by spack's build environment. Let's use a spack-provided gmake for consistent builds.
 2024-05-03 20:15:40 -07:00
Auriane R
4d7cd4c0bf Add py-flash-attn@2.4.2 (#43960) 2024-05-03 16:40:46 -07:00
Christopher Christofi
4adbfa3835 fix package permissions docs link for gaussian packages (#43998) 2024-05-03 17:35:39 -06:00
Adam J. Stewart
8a1b69c1d3 Modernize py-torch-geometric and dependencies (#43984) 
* Modernize py-torch-geometric and dependencies
* Forgot one maintainer
 2024-05-03 16:21:41 -07:00
Matthew Thompson
a1d69f8661 hdf package: fix building with apple-clang@15: (#43964) 2024-05-03 16:11:55 -07:00
Carlos Bederián
e05dbc529e globalarrays package: add missing dependencies for armci=ofi/openib (#43971) 2024-05-03 16:08:29 -07:00
jdomke
99d33bf1f2 hpl: linking against fujitsu ssl2 if available (#43978) 
* linking against fujitsu ssl2 if available

---------

Co-authored-by: domke <673751-domke@users.noreply.gitlab.com>
 2024-05-03 16:08:12 -07:00
jdomke
bd1918cd71 adding clang compiler checks which behaves exactly like aocc (#43976) 
Co-authored-by: domke <673751-domke@users.noreply.gitlab.com>
 2024-05-03 16:01:14 -07:00
snehring
2a967c7df4 graphicsmagick package: add version 1.3.43 (#43977) 2024-05-03 15:59:10 -07:00
downloadico
7596aac958 New package: py-pylith (#43987) 2024-05-03 15:56:21 -07:00
Frédéric Simonis
c73ded8ed6 preCICE: increase baseline versions for next ver (#43985) 2024-05-03 15:55:46 -07:00
Satish Balay
df1d783035 sowing: add @master (#43991) 2024-05-03 15:37:39 -07:00