Commit Graph

17857 Commits

Author SHA1 Message Date
Elizabeth Fischer
dea5d913db Updates to Python for macOS (#16449)
Co-authored-by: Elizabeth Fischer <elizabeth.fischer@alaska.edu>
2020-05-04 16:30:59 -05:00
Elizabeth Fischer
7b31f5474b grass: new versions (#16181)
* grass

* Update var/spack/repos/builtin/packages/grass/package.py

Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>

Co-authored-by: Elizabeth Fischer <elizabeth.fischer@alaska.edu>
Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>
2020-05-04 16:25:19 -05:00
Axel Huebl
87f78137a5 LAPACKC++: added "shared" variant (#16419)
We can control the shared/static build of CMake and the default in
Spack is to build shared libraries. The old, uncontrolled default
of this package is a static build.
2020-05-04 09:39:20 +02:00
Dr. Christian Tacke
d5adad6953 singularity: added missing dependencies (#16430)
See:

https://sylabs.io/guides/3.5/user-guide/quick_start.html#install-system-dependencies

for pkg-config and libseccomp
2020-05-04 09:02:38 +02:00
Nichols A. Romero
860c54335d QE-to-QMCPACK wave function converter relocation + some bug fixes (#16422)
* Revise description of patch variant.

* Add qmcpack variant. Apply QE-to-QMCPACK wave function converter patch.

* Clean-up, document, and re-organize.

* ELPA patches did not nead when=`+patch` variant.

* Need to be more precise here with QE version numbers.

* satisfies seems to be necessary here in order to get correct behaviour.

* Buglet with zlib link line.

* Update var/spack/repos/builtin/packages/quantum-espresso/package.py

Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>

* Update var/spack/repos/builtin/packages/quantum-espresso/package.py

Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>

* Fix for QE-to-QMCPACK wave function converter w.r.t. QE 6.3. Also adjust comments to reflect changes in code.

Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>
2020-05-03 14:53:01 -06:00
Adam J. Stewart
caad59e7c7 NumPy: add 1.18.4 (#16441) 2020-05-03 13:29:15 -05:00
vvolkl
ed9e19df06 Add new HEP package: fastjet (#16439)
* [fastjet] initial commit

* [fastjet] remove beta versions
2020-05-03 13:27:18 -05:00
vvolkl
3c2f46aabf Add new HEP package: Delphes (#16440)
* [delphes] initial commit

* [delphes] formatting fixes
2020-05-03 11:13:03 -05:00
Adam J. Stewart
1af31d24fd GEOS: add new version (#16437) 2020-05-02 23:38:46 -05:00
Adam J. Stewart
eb4451dd1e py-shapely: new version, Python 3.7 fix (#16438) 2020-05-02 23:38:30 -05:00
Adam J. Stewart
2e63e08192 py-cartopy: update package, fix PROJ.6 support (#16436) 2020-05-02 20:13:12 -05:00
Matthias Diener
1bc104e00e colordiff: add version 1.0.19 (#16431) 2020-05-02 13:26:56 -05:00
Jonathon Anderson
08f88b4be6 Add a gpfs variant to openmpi package (#15793)
Open MPI will detect and link against GPFS if it is present
on the system. This variant allows this to be disabled, even
if GPFS is present.
2020-05-02 11:07:50 -05:00
Sajid Ali
adafdf0644 add hydra/pmix conflict (#16428) 2020-05-01 20:51:54 -05:00
Matthias Diener
668dcb78a1 py-opentuner: add version 0.8.2 (#16423) 2020-05-01 20:50:54 -05:00
Jen Herting
acabe2deba [ncbi-magicblast] added version 1.5.0 (#16424) 2020-05-01 20:50:26 -05:00
Justin S
cf59220edc stata: add version 16 (#16425) 2020-05-01 20:50:13 -05:00
mic84
c7552c0c72 amrex: New version 20.05 (#16427) 2020-05-01 20:47:18 -05:00
Kelly (KT) Thompson
b5b7ef2ce6 Provide update for py-pyside2 version 5.14.2.1. (#16426) 2020-05-01 17:32:31 -05:00
Justin S
f38820f89c tbl2asn: new package at 20200301 (#16280)
* tbl2asn: new package at 20200301

* tbl2asn: remove unused url

* tbl2asn: use spack decompression, fix permissions

* tbl2asn: change version
2020-05-01 16:40:09 -05:00
Peter Scheibel
40df44e021 Revert "Testing: fix unintended interactions between tests (#16003)" (#16420)
This was breaking tests on develop.
2020-05-01 13:39:43 -07:00
Peter Scheibel
31d12d380f Testing: fix unintended interactions between tests (#16003)
* For tests that use the real Spack package repository, the config
  needs to avoid using MPI providers that are not intended to be
  installed by Spack. Without this, it is possible that Spack tests
  which concretize the MPI virtual will end up trying to use an
  implementation that it shouldn't (e.g. one that is always
  provided externally). See #15666 for an example.
* The mutable_config test fixture was not initializing the scope
  roots to the right directories (so the resulting config was empty).
* The current_host fixture in the concretize.py tests was using the
  config fixture rather than mutable_config, and was polluting the
  config cache for other tests.
* One test in concretize.py was clearing a nonexistent cache
  (PackagePrefs._packages_config_cache). This reference has been
  removed.
* The test 'test_preferred_compilers' was was depending on cross
  test config pollution to succeed. The initial spec before
  concretization has been updated to updated to be explicit about
  the desired result.
2020-05-01 10:47:46 -07:00
Axel Huebl
d0dfa1ea4d dev-build: --drop-in <shell> (#14887)
* dev-build: --drop-in <shell>

Add a `--drop-in <shell>` option to `spack dev-build`.
This option will automatically run a
`spack build-env <spec> -- <shell>` at the end of a `dev-build`, e.g.
to quickly drop-and-devel into a build phase of a package.

Example usage:
```
spack dev-build --before cmake --drop-in bash openpmd-api@develop
```

* build_env: drop in unit test

Co-authored-by: Greg Becker <becker33@llnl.gov>
2020-05-01 09:37:21 -07:00
Toyohisa Kameyama
40f70c4d4f mt-metis: New package. (#16380)
* mt-metis: New package.

* variant to 1 line.

* delete useless lines.
2020-05-01 10:51:27 -05:00
Matt Larsen
69a0fbd2cb raja: add awareness of the cuda architecture (#16377) 2020-05-01 10:07:12 +02:00
Jean-Laurent Picard
4f6c4743e3 arborx: fix build with new kokkos-legacy (#16413) 2020-05-01 09:30:27 +02:00
Christoph Junghans
7a56e6fce1 gromacs: add v2020.2 (#16408) 2020-04-30 19:01:07 -06:00
Satish Balay
4c69bc9d16 amrex: repo went through history rewrite - so use updates sha256sums (#16379) 2020-04-30 15:13:45 -05:00
Adam J. Stewart
022c287e47 Fix typos in new AutotoolsPackage function (#16406) 2020-04-30 15:13:04 -05:00
Michael Kuhn
a24a12f229 sqlite: Add 3.31.1 (#16404) 2020-04-30 15:12:51 -05:00
Michael Kuhn
efbd8c1555 readline: Fix homepage (#16403) 2020-04-30 15:12:38 -05:00
Michael Kuhn
9920684600 gettext: Add 0.20.2 (#16402) 2020-04-30 15:12:26 -05:00
Michael Kuhn
f04b0d99a8 glib: Add 2.64.2 (#16401) 2020-04-30 15:12:13 -05:00
Michael Kuhn
d2fc61a019 libffi: Add 3.3 (#16400) 2020-04-30 15:12:00 -05:00
Michael Kuhn
c2704a6037 perl: Add 5.30.2 (#16396) 2020-04-30 15:11:46 -05:00
Michael Kuhn
7adcb23978 libxml2: Add 2.9.10 (#16399) 2020-04-30 14:29:50 -05:00
Michael Kuhn
15c1fbc677 meson: Add 0.54.1 (#16398) 2020-04-30 14:29:36 -05:00
Michael Kuhn
6855e8e10f pcre: Add 8.44 (#16397) 2020-04-30 14:29:24 -05:00
Ben Bergen
6d7daf0def Resolves: https://github.com/spack/spack/issues/16394 (#16395)
Build problem with gcc 10.x
2020-04-30 11:16:00 -06:00
Adam J. Stewart
b55b7d5707 Fix kokkos-kernels tuple unpacking (#16393) 2020-04-30 11:36:50 -05:00
Christoph Junghans
cfb307b8e7 lammps: fix build with kokkos (#16390) 2020-04-30 10:29:08 -06:00
Adam J. Stewart
6c24142ebd Fix coreutils configure_args (#16391) 2020-04-30 11:13:23 -05:00
Christoph Junghans
74c9ba551a cabana: add v0.2 and fix kokkos deps (#16389) 2020-04-30 09:49:02 -06:00
darmac
b0ecaa1093 Add new package: bashtop (#16383) 2020-04-30 10:45:48 -05:00
Satish Balay
b2df39ea3a petsc: switch hdf5 spec from --with-hdf5-dir to --with-hdf5-lib (#16376)
This way - we can detect and use hdf5:hl,fortran - if enabled, but not require it as a dependency
2020-04-30 10:40:25 -05:00
Satish Balay
3a3f871718 xsdk: update to mfem and py-petsc4py changes (#16378)
mfem variant hypre is now rolled into variant mpi - so update spec accordingly

mfem@4.0.1-xsdk+superlu-dist is broken and unsupported - so disable it

with the addition of py-petsc4py@3.13.0 - conretizer gets confused and is not picking py-petsc4py@3.12.0 as a compatible dependency with petsc@3.12. So manually specify it.
Also depends_on('py-libensemble@0.5.2+petsc4py ^py-petsc4py@3.12.0' causes concretizer to hang forever
2020-04-30 10:33:02 -05:00
Christoph Junghans
d5d4e16f3d graphviz: fix cairo dep (#16387) 2020-04-30 10:29:20 -05:00
Christoph Junghans
f005ec016b kokkos: fix typos (#16388) 2020-04-30 09:09:13 -06:00
Jeremy
598c233f78 Update kokkos for new 3.x build systems (#16358)
* change old Makefile-based Kokkos to kokkos-legacy

* add Kokkos 3.x packages

Co-authored-by: Jeremiah J Wilke <jjwilke@kokkos-dev-2.sandia.gov>
2020-04-30 08:13:47 -06:00
Teodor Nikolov
9627cbbe1b lapackpp and blaspp: added packages (develop branch) (#16373) 2020-04-30 16:05:45 +02:00