Tom Scogland 
							
						 
					 
					
						
						
							
						
						df30182a10 
					 
					
						
						
							
							appeasing flake8 in environment  
						
						
						
						
					 
					
						2016-05-14 17:39:59 -07:00 
						 
				 
			
				
					
						
							
							
								Tom Scogland 
							
						 
					 
					
						
						
							
						
						0668b6d7ba 
					 
					
						
						
							
							changes to appease flake8 for lua-luaposix package  
						
						
						
						
					 
					
						2016-05-14 17:38:32 -07:00 
						 
				 
			
				
					
						
							
							
								Tom Scogland 
							
						 
					 
					
						
						
							
						
						21161a60ff 
					 
					
						
						
							
							changes to appease flake8 (mostly) for lua package  
						
						
						
						
					 
					
						2016-05-14 17:38:13 -07:00 
						 
				 
			
				
					
						
							
							
								Glenn Johnson 
							
						 
					 
					
						
						
							
						
						fffc2d2765 
					 
					
						
						
							
							Updated turbomole package file.  
						
						... 
						
						
						
						This PR updates the turbomole package file but does not introduce any
new funtionality. The updtes are:
- use spack interface for subprocess.PIPE and subprocess.Popen
- clean up based on flake8
- remove some extra whitespace 
						
						
					 
					
						2016-05-14 19:33:45 -05:00 
						 
				 
			
				
					
						
							
							
								Tom Scogland 
							
						 
					 
					
						
						
							
						
						12e36ee0e7 
					 
					
						
						
							
							fix merge error  
						
						
						
						
					 
					
						2016-05-14 16:20:45 -07:00 
						 
				 
			
				
					
						
							
							
								Tom Scogland 
							
						 
					 
					
						
						
							
						
						b5979b13e3 
					 
					
						
						
							
							complete lua rework, also module path fix  
						
						... 
						
						
						
						This is a complete rework of the lua package, it also allows the
environment modification classes to handle paths that are not separated
by colons, and uses the support for same in TCL modules as well.
The biggest difference is the handling for lua extension packages, which
now have their paths set correctly by the lua parent package, and have
access to both lua and luarocks as installation tools. See the luaposix
package for what should be required for most lua packages after this. 
						
						
					 
					
						2016-05-14 16:18:26 -07:00 
						 
				 
			
				
					
						
							
							
								Elizabeth Fischer 
							
						 
					 
					
						
						
							
						
						efa506b235 
					 
					
						
						
							
							Preparing spack setup command for merge.  Try this out for a while...  
						
						
						
						
					 
					
						2016-05-14 17:09:11 -04:00 
						 
				 
			
				
					
						
							
							
								Denis Davydov 
							
						 
					 
					
						
						
							
						
						c5a35acd67 
					 
					
						
						
							
							sed: add package  
						
						
						
						
					 
					
						2016-05-14 22:29:16 +02:00 
						 
				 
			
				
					
						
							
							
								Elizabeth Fischer 
							
						 
					 
					
						
						
							
						
						4bf9b168a5 
					 
					
						
						
							
							netcdf-cxx4: Update to latest released version 4.3.0  
						
						
						
						
					 
					
						2016-05-14 16:19:10 -04:00 
						 
				 
			
				
					
						
							
							
								Brett Viren 
							
						 
					 
					
						
						
							
						
						b3ede099e2 
					 
					
						
						
							
							Document  command.  
						
						
						
						
					 
					
						2016-05-14 13:15:25 -04:00 
						 
				 
			
				
					
						
							
							
								Brett Viren 
							
						 
					 
					
						
						
							
						
						c98afe2205 
					 
					
						
						
							
							Pick a better name for the 'spec' parameters.  
						
						
						
						
					 
					
						2016-05-14 13:14:51 -04:00 
						 
				 
			
				
					
						
							
							
								Brett Viren 
							
						 
					 
					
						
						
							
						
						8078845273 
					 
					
						
						
							
							Remove problematic tests, deal with this issue outside of PR  #869 .  
						
						
						
						
					 
					
						2016-05-14 09:11:41 -04:00 
						 
				 
			
				
					
						
							
							
								Brett Viren 
							
						 
					 
					
						
						
							
						
						8ddc1f8977 
					 
					
						
						
							
							Move from str.format() to string.Template.  
						
						
						
						
					 
					
						2016-05-14 09:11:04 -04:00 
						 
				 
			
				
					
						
							
							
								Gregory L. Lee 
							
						 
					 
					
						
						
							
						
						e3cd0a67d0 
					 
					
						
						
							
							address flake8 issues  
						
						
						
						
					 
					
						2016-05-13 16:12:48 -07:00 
						 
				 
			
				
					
						
							
							
								Gregory L. Lee 
							
						 
					 
					
						
						
							
						
						e9b71872a8 
					 
					
						
						
							
							addressed PR#946 comments from @adamjstewart  
						
						
						
						
					 
					
						2016-05-13 15:16:07 -07:00 
						 
				 
			
				
					
						
							
							
								Mario Melara 
							
						 
					 
					
						
						
							
						
						fce6ecb05c 
					 
					
						
						
							
							Changed _proper_compiler_spec to return filtered list. Apparently filter returns a list rather than filtering the original list. Lead to compiler finding problems if user specified frontend compilers  
						
						
						
						
					 
					
						2016-05-13 15:04:06 -07:00 
						 
				 
			
				
					
						
							
							
								Gregory Becker 
							
						 
					 
					
						
						
							
						
						f43cab0951 
					 
					
						
						
							
							fixed pkgconfig issue  
						
						
						
						
					 
					
						2016-05-13 14:39:20 -07:00 
						 
				 
			
				
					
						
							
							
								Todd Gamblin 
							
						 
					 
					
						
						
							
						
						4a6ec6377d 
					 
					
						
						
							
							Merge pull request  #940  from gzagaris/feature/doxygen-version-1.8.11  
						
						... 
						
						
						
						Add doxygen version 1.8.11 
						
						
					 
					
						2016-05-13 10:10:23 -07:00 
						 
				 
			
				
					
						
							
							
								Todd Gamblin 
							
						 
					 
					
						
						
							
						
						6ee21727de 
					 
					
						
						
							
							Merge pull request  #949  from davydden/bugfix/openblas  
						
						... 
						
						
						
						openblas: use spack_cc/spack_f77 and add a note on compiler mixing 
						
						
					 
					
						2016-05-13 10:00:57 -07:00 
						 
				 
			
				
					
						
							
							
								Denis Davydov 
							
						 
					 
					
						
						
							
						
						8db35ab9a2 
					 
					
						
						
							
							openblas: use spack_cc/spack_f77 and add a note on compiler mixing  
						
						
						
						
					 
					
						2016-05-13 17:28:30 +02:00 
						 
				 
			
				
					
						
							
							
								Denis Davydov 
							
						 
					 
					
						
						
							
						
						67999d1b1c 
					 
					
						
						
							
							astyle: fix filter command which failed on OSX with python 2.7.10  
						
						
						
						
					 
					
						2016-05-13 17:13:45 +02:00 
						 
				 
			
				
					
						
							
							
								George Zagaris 
							
						 
					 
					
						
						
							
						
						e763eeacdd 
					 
					
						
						
							
							fix format in doxygen/package.py  
						
						
						
						
					 
					
						2016-05-12 23:25:10 -07:00 
						 
				 
			
				
					
						
							
							
								Gregory L. Lee 
							
						 
					 
					
						
						
							
						
						b8a91db089 
					 
					
						
						
							
							Intel software packages and license enhancements  
						
						
						
						
					 
					
						2016-05-12 20:04:45 -07:00 
						 
				 
			
				
					
						
							
							
								Gregory Becker 
							
						 
					 
					
						
						
							
						
						4c9dd028d2 
					 
					
						
						
							
							Fixed error causing hang in env/cc  
						
						
						
						
					 
					
						2016-05-12 17:20:48 -07:00 
						 
				 
			
				
					
						
							
							
								Adam J. Stewart 
							
						 
					 
					
						
						
							
						
						088dce709e 
					 
					
						
						
							
							Make flake8 happy  
						
						
						
						
					 
					
						2016-05-12 16:33:37 -05:00 
						 
				 
			
				
					
						
							
							
								Adam J. Stewart 
							
						 
					 
					
						
						
							
						
						ab41fd6692 
					 
					
						
						
							
							Add bertini package  
						
						... 
						
						
						
						Also add missing dependency. Flex would not build for me without bison.
It complained about not being able to find `yacc`. 
						
						
					 
					
						2016-05-12 16:21:06 -05:00 
						 
				 
			
				
					
						
							
							
								Todd Gamblin 
							
						 
					 
					
						
						
							
						
						5e13bba068 
					 
					
						
						
							
							Fix   #941 : add copyright to new package files.  
						
						... 
						
						
						
						- also reworded the boilerplate a bit. 
						
						
					 
					
						2016-05-12 10:30:13 -07:00 
						 
				 
			
				
					
						
							
							
								Todd Gamblin 
							
						 
					 
					
						
						
							
						
						d9cc1f85a5 
					 
					
						
						
							
							Merge pull request  #932  from adamjstewart/features/elk  
						
						... 
						
						
						
						Elk: Use new openmp_flag and mpi attributes 
						
						
					 
					
						2016-05-12 09:05:41 -07:00 
						 
				 
			
				
					
						
							
							
								Adam J. Stewart 
							
						 
					 
					
						
						
							
						
						03307f91df 
					 
					
						
						
							
							Fix bug when compiling elk~mpi  
						
						
						
						
					 
					
						2016-05-12 10:27:05 -05:00 
						 
				 
			
				
					
						
							
							
								Adam J. Stewart 
							
						 
					 
					
						
						
							
						
						3526d92660 
					 
					
						
						
							
							Indentation fix  
						
						
						
						
					 
					
						2016-05-12 10:27:05 -05:00 
						 
				 
			
				
					
						
							
							
								Adam J. Stewart 
							
						 
					 
					
						
						
							
						
						d7020434d9 
					 
					
						
						
							
							Use new-ish blas_shared_lib and more flake8 fixes  
						
						
						
						
					 
					
						2016-05-12 10:27:04 -05:00 
						 
				 
			
				
					
						
							
							
								Adam J. Stewart 
							
						 
					 
					
						
						
							
						
						e2e72b14b2 
					 
					
						
						
							
							Use new openmp_flag and mpi attributes  
						
						
						
						
					 
					
						2016-05-12 10:26:10 -05:00 
						 
				 
			
				
					
						
							
							
								George Zagaris 
							
						 
					 
					
						
						
							
						
						3ece0e7b76 
					 
					
						
						
							
							Add doxygen version 1.8.11  
						
						
						
						
					 
					
						2016-05-12 00:42:22 -07:00 
						 
				 
			
				
					
						
							
							
								Denis Davydov 
							
						 
					 
					
						
						
							
						
						68c681bb78 
					 
					
						
						
							
							document blas and lapack usage in packages  
						
						
						
						
					 
					
						2016-05-12 08:59:17 +02:00 
						 
				 
			
				
					
						
							
							
								Todd Gamblin 
							
						 
					 
					
						
						
							
						
						e7ced54369 
					 
					
						
						
							
							Correct LLNL LGPL license template for clarity.  
						
						
						
						
					 
					
						2016-05-11 21:22:25 -07:00 
						 
				 
			
				
					
						
							
							
								Todd Gamblin 
							
						 
					 
					
						
						
							
						
						14fe0b8ad2 
					 
					
						
						
							
							Merge pull request  #558  from adamjstewart/features/pgi  
						
						... 
						
						
						
						Add Licensed Software Support 
						
						
					 
					
						2016-05-11 17:17:47 -07:00 
						 
				 
			
				
					
						
							
							
								Todd Gamblin 
							
						 
					 
					
						
						
							
						
						2dc49ee88d 
					 
					
						
						
							
							Merge pull request  #938  from KineticTheory/pkg-moab  
						
						... 
						
						
						
						Provide new package: MOAB 
						
						
					 
					
						2016-05-11 17:14:05 -07:00 
						 
				 
			
				
					
						
							
							
								Gregory Becker 
							
						 
					 
					
						
						
							
						
						45bf93405a 
					 
					
						
						
							
							Changed spec syntax for new parts from modules feature  
						
						
						
						
					 
					
						2016-05-11 16:23:13 -07:00 
						 
				 
			
				
					
						
							
							
								Kelly (KT) Thompson 
							
						 
					 
					
						
						
							
						
						c5a19b57f7 
					 
					
						
						
							
							Clean up formatting.  
						
						
						
						
					 
					
						2016-05-11 16:33:57 -06:00 
						 
				 
			
				
					
						
							
							
								Gregory Becker 
							
						 
					 
					
						
						
							
						
						2e1810e3a7 
					 
					
						
						
							
							re-merging develop  
						
						
						
						
					 
					
						2016-05-11 15:26:09 -07:00 
						 
				 
			
				
					
						
							
							
								Gregory Becker 
							
						 
					 
					
						
						
							
						
						566fec4015 
					 
					
						
						
							
							Fixed variants in new format and removed print statements from debugging  
						
						
						
						
					 
					
						2016-05-11 14:56:41 -07:00 
						 
				 
			
				
					
						
							
							
								Kelly (KT) Thompson 
							
						 
					 
					
						
						
							
						
						8bec127a1d 
					 
					
						
						
							
							Attempt to fix formatting issues (flake8).  
						
						
						
						
					 
					
						2016-05-11 14:00:44 -06:00 
						 
				 
			
				
					
						
							
							
								Kelly (KT) Thompson 
							
						 
					 
					
						
						
							
						
						9482ce1fce 
					 
					
						
						
							
							Remove some extraneous comments.  
						
						
						
						
					 
					
						2016-05-11 12:39:20 -06:00 
						 
				 
			
				
					
						
							
							
								Kelly (KT) Thompson 
							
						 
					 
					
						
						
							
						
						e200a41d3d 
					 
					
						
						
							
							New package MOAB.  
						
						
						
						
					 
					
						2016-05-11 12:34:33 -06:00 
						 
				 
			
				
					
						
							
							
								Gregory Becker 
							
						 
					 
					
						
						
							
						
						0b5836cfce 
					 
					
						
						
							
							Fixed flipped conditional in satisfies  
						
						
						
						
					 
					
						2016-05-11 10:51:52 -07:00 
						 
				 
			
				
					
						
							
							
								Adam J. Stewart 
							
						 
					 
					
						
						
							
						
						c043275f1b 
					 
					
						
						
							
							Final flake8 changes  
						
						
						
						
					 
					
						2016-05-11 11:46:41 -05:00 
						 
				 
			
				
					
						
							
							
								Todd Gamblin 
							
						 
					 
					
						
						
							
						
						9cf5404bb7 
					 
					
						
						
							
							Merge pull request  #937  from davydden/features/unit_tests  
						
						... 
						
						
						
						Features/package_test 
						
						
					 
					
						2016-05-11 09:42:00 -07:00 
						 
				 
			
				
					
						
							
							
								Adam J. Stewart 
							
						 
					 
					
						
						
							
						
						5879f8207f 
					 
					
						
						
							
							Flake8 formatting changes  
						
						
						
						
					 
					
						2016-05-11 11:32:08 -05:00 
						 
				 
			
				
					
						
							
							
								Adam J. Stewart 
							
						 
					 
					
						
						
							
						
						ee7ec4fa66 
					 
					
						
						
							
							Move all licensing support to pre/post_install hooks  
						
						
						
						
					 
					
						2016-05-11 11:32:08 -05:00 
						 
				 
			
				
					
						
							
							
								Adam J. Stewart 
							
						 
					 
					
						
						
							
						
						19f4b27fd2 
					 
					
						
						
							
							Add documentation for packaging of licensed software  
						
						
						
						
					 
					
						2016-05-11 11:32:08 -05:00