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9044 Commits

Author SHA1 Message Date
liuyangzhuan
b384504218 butterflypack package: add version 1.0.3 (#12927) 2019-09-25 19:16:47 -07:00
Glenn Johnson
dd626a0f07 interproscan package: add version 4.8, patch for version 5 (#12897) 
This PR adds interproscan-4.8, which has a completely different build
system than version 5. Note that this builds for running on a host as
opposed to a queue system. I am fairly certain that a queue system can
be configured later.

This PR also adds a patch for intrproscan-5 to build when the user
building the packages has a large GID by setting posix mode for tar.
 2019-09-25 19:04:57 -07:00
Sinan
c5860d89b7 libspatialite package: add version 3.0.1 and missing dependencies (#12843) 2019-09-25 18:48:48 -07:00
Sinan
507b28de18 py-imageio package: add versions 2.4.1 and 2.5.0 (#12884) 2019-09-25 18:44:57 -07:00
Matthieu Dorier
e6cae978b8 llvm, mesa: update target comparison semantics (#12914) 
* llvm: fixed issues with syntax and formatting
  * use spec.architecture.target.family
  * use spec.target instead of spec.architecture.target
* mesa: use == instead of __contains__
 2019-09-25 16:41:02 -07:00
Adam J. Stewart
4e858e24b0 libflame: fix macOS build (#12950) 2019-09-25 18:37:33 -05:00
Matthieu Dorier
71cc29691b openblas: fixed a query to target family (#12910) 2019-09-25 22:15:23 +02:00
Christoph Junghans
ccfe8aaf76 portage: fix RelWithDebInfo build (#12944) 2019-09-25 11:29:43 -06:00
Christoph Junghans
e123058721 kokkos-kernels: initial commit (#12934) 2019-09-25 09:00:01 -06:00
Mathias Jacquelin
7a11a2ccdb Upcxx package: remove warning, add version 2019.9.0 (#12880) 
A function added to this package ran as part of importing it and
printed a warning for most Spack invocations, this removes the
warning message.

Also:

* Use compilers directly instead of Spack compiler wrappers (since
  references to the compiler are embedded in text and binary files
  of the installation)
* Add 'cross' variant for setting CROSS environment variable for
  build
* Set UPCXX_INSTALL for generated module files
* Set UPCXX_GASNET_CONDUIT/UPCXX_NETWORK in generated module files
  on Cray systems
* Also set UPCXX_NETWORK in build environment for Cray systems
 2019-09-24 13:25:05 -07:00
Simo Tuomisto
6cd5edacca heaptrack: added new package at version 1.1.0 (#12844) 2019-09-24 15:54:23 +02:00
Glenn Johnson
10d5e90e65 Add missing dependency to perl-xml-parser (#12903) 
This PR adds the following dependency:

+    depends_on('perl-libwww-perl', type=('build', 'run'))
 2019-09-24 12:51:55 +02:00
Glenn Johnson
fa5a9cd878 Added missing dependencies for perl-list-moreutils (#12900) 
The following dependencies were added:

+    depends_on('perl-exporter-tiny', type=('build', 'run'))
+    depends_on('perl-list-moreutils-xs', type=('build', 'run'))
 2019-09-24 12:45:39 +02:00
Glenn Johnson
b508eaa806 Added depencies to perl-libwww-perl (#12899) 
The following dependencies are needed for perl-libwww-perl according to
https://metacpan.org:

+    depends_on('perl-encode-locale', type=('build', 'run'))
+    depends_on('perl-file-listing', type=('build', 'run'))
+    depends_on('perl-html-parser', type=('build', 'run'))
+    depends_on('perl-http-cookies', type=('build', 'run'))
+    depends_on('perl-http-daemon', type=('build', 'run'))
+    depends_on('perl-http-date', type=('build', 'run'))
+    depends_on('perl-http-message', type=('build', 'run'))
+    depends_on('perl-http-negotiate', type=('build', 'run'))
+    depends_on('perl-lwp-mediatypes', type=('build', 'run'))
+    depends_on('perl-net-http', type=('build', 'run'))
+    depends_on('perl-try-tiny', type=('build', 'run'))
+    depends_on('perl-uri', type=('build', 'run'))
+    depends_on('perl-www-robotrules', type=('build', 'run'))
 2019-09-24 12:45:02 +02:00
Glenn Johnson
ca11ce06b8 Add missing dependencies to perl-http-daemon (#12898) 
Added the following dependencies:

+    depends_on('perl-http-date', type=('build', 'run'))
+    depends_on('perl-module-build-tiny', type='build')
 2019-09-24 12:44:28 +02:00
Axel Huebl
1d316c4eb3 spdlog: added version 1.4.1 (#12917) 
Add newest release with ability to pre-build as shared or static
library.
 2019-09-24 12:19:19 +02:00
Adam J. Stewart
53db1eafb9 Fix installation permissions on BLIS and libflame libs (#12919) 
* Fix installation permissions on BLIS and libflame libs

* Fix undefined symbols
 2019-09-23 18:54:47 -05:00
Jed Brown
958b81a564 libceed package: add version 0.5 (#12875) 
Also enable vectorization via -O3 for gcc/clang
 2019-09-23 10:38:44 -07:00
Seth R. Johnson
27d4e9a1d1 QT package: only enable fontconfig when freetype is enabled (#12574) 
The 'fontconfig' option is only valid when freetype is enabled.
 2019-09-23 10:04:29 -07:00
Xavier Delaruelle
53ab298e88 environment-modules: add version 4.3.1 (#12893) 2019-09-21 21:32:27 -05:00
Paul
ef652ee42a czmq package: add autoreconf stage (#12846) 2019-09-20 18:14:41 -07:00
Jordan Ogas
d9c22e3f9c charliecloud package: add version 0.11 and test dependency (#12861) 2019-09-20 18:01:40 -07:00
Sinan
326c2718d5 New package: py-gast (#12874) 2019-09-20 17:59:50 -07:00
t-karatsu
e26b23e980 intel-tbb: fix typo. 2019-09-20 17:53:23 -07:00
Sinan
af8f245f48 py-protobuf package: fix import error for Python 2.x (#12873) 2019-09-20 17:52:11 -07:00
Massimiliano Culpo
7daf860991 targets: adjust packages to use new specific targets semantics 
Seamless translation from 'target=<generic>' to either
- target.family == <generic> (in methods)
- 'target=<generic>:' (in directives)

Also updated docs to show ranges in directives.
 2019-09-20 00:51:37 -07:00
Valentin Clement (バレンタイン クレメン)
83bea039cf CLAW Compiler: added version 2.0.1 (#12878) 2019-09-19 18:27:22 +02:00
Adam J. Stewart
cbbd384628 blis: fix darwin install name (#12869) 2019-09-18 22:46:34 -05:00
Adam J. Stewart
a4e585bad5 googletest: fix darwin install name (#12871) 2019-09-18 22:46:16 -05:00
Adam J. Stewart
964500399b libkml: fix darwin install name (#12872) 2019-09-18 22:44:57 -05:00
Adam J. Stewart
b33d005267 wcslib: fix darwin install name (#12868) 2019-09-18 22:44:38 -05:00
Adam J. Stewart
1fe94748d2 diffutils: add missing libiconv dependency (#12866) 2019-09-18 15:36:41 -05:00
Julien Loiseau
cacbb4ff7a Correcting branch used for FleCSPH (#12865) 2019-09-18 14:00:47 -06:00
Adam J. Stewart
ec11574a02 Add SQLite 3.29.0 (#12862) 2019-09-18 14:36:41 -05:00
Adam J. Stewart
6d7e543cef GDAL: Add support for MKL driver (#12837) 2019-09-18 13:47:31 -05:00
Adam J. Stewart
680430df0f Add libkml package (#12836) 
* Add libkml package

* googletest needs to be linked to RPATH
 2019-09-18 13:46:45 -05:00
Adam J. Stewart
9a7b5ac7cb libunistring: add missing dependency on libiconv (#12863) 2019-09-18 13:37:19 -05:00
Adam J. Stewart
9d67ac2407 Add minizip package (#12835) 2019-09-18 12:53:01 -05:00
Adam J. Stewart
3eb0bcf4a1 Add uriparser package (#12834) 
* Add uriparser package

* googletest needs to be linked to RPATH
 2019-09-18 12:52:40 -05:00
Patrick Gartung
7c0c31361a Update buildcache creation and installation to allow mach-o binary relocation using py-machotools on linux or macos. (#12858) 
Update py-machotools dependencies and versions.
 2019-09-18 07:24:45 -05:00
Sinan
9807bb5d03 add a version (#12856) 2019-09-17 22:54:18 -05:00
Greg Becker
eb4dd4a51a Boost: add libs property (#12849) 2019-09-17 20:30:29 -05:00
Sinan
02ae944c74 fix typo in version number (#12855) 2019-09-17 20:28:57 -05:00
Christoph Junghans
b11a98abf0 cmake: add v3.15.{2,3} (#12847) 2019-09-17 13:13:39 -06:00
George Hartzell
ae37896800 cryptsetup package: dont vendor libuuid in util-linux (#12839) 
Fixes #12829

This adds a variant to the util-linux package that controls whether it
builds its own libuuid.  Variant defaults to True.  It enables other
packages to choose to get libuuid from the libuuid package instead.

This also changes the cryptsetup package to build util-linux with
~libuuid (so it uses an explicitly-Spack-built instance of libuuid
instead).
 2019-09-17 11:22:10 -07:00
Adam J. Stewart
14ef0c238e Add py-pycbc package (#12823) 2019-09-16 13:10:02 -05:00
Adam J. Stewart
269f34c310 Add py-astropy 2.0.14 (#12816) 2019-09-16 13:09:30 -05:00
Adam J. Stewart
98eb8ef0af Add py-beautifulsoup4 4.8.0 (#12815) 2019-09-16 13:08:36 -05:00
Adam J. Stewart
94291ebd1a Add py-mpld3 package (#12822) 2019-09-16 13:08:17 -05:00
Adam J. Stewart
a08a7da413 Add py-asdf package (#12817) 2019-09-16 13:07:48 -05:00