Commit Graph

30860 Commits

Author SHA1 Message Date
Luke Diorio-Toth
ec7513c8b5 py-panaroo, py-edlib, and py-intbitset: new packages (#31452) 2022-07-07 18:13:39 -06:00
Erin Newcomer
44b48cfe46 Package/py phylophlan (#31422)
* py-phylophlan: new package

* py-phyloseq: new package

* py-phylophlan: style fix

* py-phylophlan: fixed dependencies

* py-phylophlan: style fix
2022-07-07 14:06:55 -07:00
Tamara Dahlgren
a12ce9fd59 OpenBabel: Make building with GUI an option (#31456) 2022-07-07 09:43:17 -07:00
Cory Bloor
bb92ea59a2 Fix spack edit message when no editor installed (#31412)
When no default editor is installed and no environment variable is set,
which_string would return None and this would be passed to os.execv
resulting in a TypeError. The message presented to the user would be:

    Error: execv: path should be string, bytes or os.PathLike,
    not NoneType

This change checks that which_string has returned successfully before
attempting to execute the result, resulting in a new error message:

    Error: No text editor found! Please set the VISUAL and/or EDITOR
    environment variable(s) to your preferred text editor.

It's not strictly necessary, but I've also changed try_exec to catch
all errors rather than just OSErrors. This would have provided slightly
more context for the original error message.
2022-07-07 17:08:15 +02:00
Stephen Sachs
626b239c96 [py-distributed] Add version 2022.2.1 (#31465) 2022-07-07 08:06:18 -07:00
Adam J. Stewart
211030cd19 py-pytorch-lightning: remove upper bounds on deps (#31443) 2022-07-07 17:05:33 +02:00
Stephen Sachs
3787f0c64c mpas-model: Overwrite compiler args in Makefile (#31431)
Use 8 byte reals only when `precision=double` is set

The pre-defined compilation targets do not follow the usual behavior of
Makefiles. Compiler flags are set as strings (not Makefile variables) and as
such are not able to be overridden by environment variables. This patch changes
the behavior to the expected behavior of a Makefile such that `fflags` etc have
the desired effect.

Co-authored-by: Stephen Sachs <stesachs@amazon.com>
2022-07-07 17:04:51 +02:00
Ryan Marcellino
be65e4471e speexdsp: add pkgconfig dependency (#31455) 2022-07-07 16:53:11 +02:00
Adam J. Stewart
8745009492 py-tensorboard: install from wheel (#31445) 2022-07-07 16:48:06 +02:00
Adam J. Stewart
7c5116a73a py-rasterio: add v1.3.0 (#31457) 2022-07-07 16:46:52 +02:00
Stephen Sachs
e6bdbde54e libzmq: fix issue with newer GCC and master branch (#31468)
Co-authored-by: Stephen Sachs <stesachs@amazon.com>
2022-07-07 08:45:37 -06:00
Adam J. Stewart
386f08c1b4 py-torch: re-add headers/libs properties (#31446) 2022-07-07 16:31:09 +02:00
Adam J. Stewart
9c437e2a10 py-torchgeo: tiff support required (#31447) 2022-07-07 16:30:18 +02:00
Marie Houillon
d393260a11 Fix conditional dependencies for openCARP (#31478) 2022-07-07 08:21:41 -06:00
Tamara Dahlgren
1b919d306f Documentation: Add SourceforgePackage to the build systems docs (#31473) 2022-07-07 14:30:22 +02:00
Stephen Sachs
ad95b0d01d [py-ipyparallel] setuptools.config.StaticModule moved (#31467)
* [py-ipyparallel] setuptools.config.StaticModule moved

... in py-setuptools@61

* [py-ipyparallel] setuptools fix only added to release 8.2.1

https://github.com/ipython/ipyparallel/pull/680

* [py-ipyparallel] Fix typo

Co-authored-by: Stephen Sachs <stesachs@amazon.com>
2022-07-07 03:17:36 -06:00
Vanessasaurus
6b1e86aecc removing feature bloat: monitor and analyzers (#31130)
Signed-off-by: vsoch <vsoch@users.noreply.github.com>

Co-authored-by: vsoch <vsoch@users.noreply.github.com>
2022-07-07 00:49:40 -06:00
Stephen Hudson
3338d536f6 libEnsemble: add v0.9.2 (#31471) 2022-07-06 19:14:12 -07:00
Erik Schnetter
6cbcc94fc9 kokkos: New version 3.6.01 (#31462) 2022-07-06 14:33:48 -06:00
Erik Schnetter
c7ac0b9aa6 spiner: New version 1.5.1 (#31461) 2022-07-06 14:21:53 -06:00
Adam J. Stewart
5efe0822b8 pip bootstrap packages: add myself as maintainer (#31448) 2022-07-06 14:05:42 -06:00
Kenny Weiss
5d97c816ca Minor typo fix in mfem's package (#31470)
Pointed out by @agcapps
2022-07-06 12:52:23 -07:00
Tamara Dahlgren
e68ed3268b Testing Bugfix: refactor clean --python-cache to support all (#31449)
There were two choices: 1) remove '-p' from '-a' or 2) allow monkeypatching
the cleaning of the python cache since clean's test_function_calls isn't
supposed to be actually cleaning anything.

This commit supports the latter and adds a test case for `-p`.
2022-07-06 11:44:41 -07:00
Weiqun Zhang
9a711e6ffa amrex: add v22.07 (#31464) 2022-07-06 11:13:44 -06:00
iarspider
fcea26ca23 Add checksum for py-lazy-object-proxy 1.7.0 and 1.7.1 (#31435)
* Add checksum for py-lazy-object-proxy 1.7.0 and 1.7.1

* Update package.py
2022-07-06 10:06:37 -07:00
iarspider
687cac3a79 Add checksum for py-pylint 2.14.4; py-astroid 2.11.5, 2.11.6 (#31436)
* Add checksums for astroid 2.11.5 and 2.11.6

* Add checksum for py-pylint 2.14.4

* Update package.py

* Add checksum for py-tomlkit 0.11.0
2022-07-06 09:58:35 -07:00
otsukay
d9f49d7415 add recipe for improved-rdock (#31158)
* add recipe for improved-rdock

* style: fix format

* style: fix format again

* Fix location of the directory

* Fix copyright

* Fix according to the reviewer's comments.

* Revert "Fix according to the reviewer's comments."

This reverts commit 4877877daf.

* Fix according to the reviewer's comments.

* style: fix format

* Update var/spack/repos/builtin/packages/improved-rdock/package.py

Co-authored-by: Tamara Dahlgren <35777542+tldahlgren@users.noreply.github.com>

Co-authored-by: Yuichi Otsuka <otsukay@riken.jp>
Co-authored-by: Tamara Dahlgren <35777542+tldahlgren@users.noreply.github.com>
2022-07-06 09:25:45 -07:00
Erik Schnetter
ccb5432177 readline: New version 8.1.2 (#31025) 2022-07-06 16:32:12 +02:00
Mikael Simberg
dfb0c6c51d Add pika 0.6.0 (#31458) 2022-07-06 11:55:58 +02:00
Adam J. Stewart
8d1c723576 Bazel: new versions, patches, conflicts, and java version contraints (#31402) 2022-07-05 23:28:50 -05:00
Adam J. Stewart
8037c91403 py-libclang: add v13.0.0 (#31441) 2022-07-05 17:50:07 -07:00
Adam J. Stewart
30e5828f06 llvm-openmp: add v14.0.6 (#31440) 2022-07-05 17:11:00 -07:00
Mark W. Krentel
12fb842bea hpctoolkit: add variants for gtpin and opencl (#31439)
Reorder a few options to better group them by function.
2022-07-05 12:22:00 -07:00
Matthew LeGendre
37c9974755 Add adiak version 0.2.2 (#31438) 2022-07-05 13:05:51 -06:00
Luke Diorio-Toth
86a127788d Package/ont-guppy (#31417)
* guppy: new package

* adding different hashs/urls

* working now

* guppy: new package

* ont-guppy: new package

* ont-guppy: new package

* ont-guppy: fixed style
2022-07-05 10:46:58 -07:00
Annop Wongwathanarat
613362c42d armpl: Add new versions and rename package to armpl-gcc (#31437)
Co-authored-by: Annop Wongwathanarat <annop.wongwathanarat@arm.com>
2022-07-05 10:22:12 -07:00
Richard Berger
b7fb5dbb28 flecsi: exclude caliper versions that cause aborts with Legion (#31410) 2022-07-05 09:29:47 -06:00
Harmen Stoppels
dac31ef3c4 Remove fetch from depfile (#31433) 2022-07-05 14:48:32 +02:00
Alberto Invernizzi
bb3a663392 ROCmPackage: unify amdgpu_targets (#30582)
* unify amdgpu_targets for rocsolver and rocblas

* add more archs

* adapt all roc packages to unified amdgpu_targets
2022-07-05 14:33:30 +02:00
Valentin Volkl
d05ab36ff9 bdsim: add new package (#31384)
Co-authored-by: gganis <gerardo.ganis@cern.ch>
2022-07-05 12:30:15 +02:00
Jean-Paul Pelteret
f6d701ca26 deal.II: add v9.4.0 (#31279) 2022-07-05 11:40:28 +02:00
Paul R. C. Kent
ffcd9282b5 libcint: add v5.1.3 (#31340) 2022-07-05 11:34:59 +02:00
haralmha
28c5c3285a root: set gnuinstall to True (#31209) 2022-07-05 11:27:49 +02:00
Adam J. Stewart
6dc708670c py-torchgeo: latest version of torchvision won't work (#31372) 2022-07-05 11:21:31 +02:00
Marco De La Pierre
d71bbf036f lammps: add versions and packages Feb-Jun 2022 (#31369) 2022-07-05 11:14:28 +02:00
Mikael Simberg
8cf7241b64 Build llvm-amdgpu's libcxx with cmake --build (#31403)
CMAKE_GENERATOR may be set to something other than "Unix Makefiles" in
which case the build would fail because there is no Makefile for make to
build.
2022-07-05 10:52:52 +02:00
Adam J. Stewart
f932a832ac node-js: fix build on macOS 12 (#31408) 2022-07-05 10:42:14 +02:00
Cory Bloor
a183b343b9 rocalution: add spack build test (#31415)
- rocprim is a header-only library; its amdgpu_target variant is only
  meaningful for its client executables, not the library itself
- comgr and llvm-amdgpu are merely indirect dependencies (via hip)
2022-07-05 10:02:46 +02:00
Paul R. C. Kent
08fa0c9d46 pyscf: add v2.0.1 (#31342) 2022-07-05 09:14:06 +02:00
Sergey Kosukhin
0b3a409746 nag: fix installation of man pages (#31428) 2022-07-05 09:10:45 +02:00