zhangyiss/spack
1
0
Fork 0
Code Issues Pull Requests Actions Packages Projects Releases Wiki Activity
38,057 Commits 246 Branches 186 Tags
ef87a9a05223d6a36e9d304cadcf31221e01e31b
Commit Graph

38057 Commits

This Branch
This Branch
All Branches
Author SHA1 Message Date
George Young
4d156b9e6b relion: add 4.0.1, fix build on Rocky8 (#40074) 
Co-authored-by: LMS Bioinformatics <bioinformatics@lms.mrc.ac.uk>
 2023-09-21 20:24:03 +02:00
Jonas Thies
56df8b61a2 phist: fix compatibility with python@3.11: (#40082) 2023-09-21 20:21:35 +02:00
Anton Kozhevnikov
170867e38a SIRIUS: remove old versions (#40105) 2023-09-21 20:18:58 +02:00
Wileam Y. Phan
5ca9fd6c82 Fix false detection of llvm-amdgpu as llvm and llvm-doe (#40113) 2023-09-21 20:15:20 +02:00
Robert Underwood
ef165c80b3 py-nanobind add cmake path (#40079) 
* py-nanobind add cmake path

* fix style

---------

Co-authored-by: Robert Underwood <runderwood@anl.gov>
 2023-09-21 13:15:02 -05:00
Lydéric Debusschère
6859694e8e [add] py-graphql-ws: new recipe, required by py-cylc-uiserver (#39991) 
* [add] py-graphql-ws: new recipe, required by py-cylc-uiserver

* py-graphql-ws: remove constraint on version for python
 2023-09-21 13:14:11 -05:00
John W. Parent
aeaca77630 Harden compiler detection against errors (#39736) 
Fixes #39622

Add a timeout to compiler detection and allow Spack to proceed when
this timeout occurs.

In all cases, the timeout is 120 seconds: it is assumed any compiler
invocation we do for the purposes of verifying it would resolve in
that amount of time.

Also refine executables that are tested as being possible MSVC
instances, and limit where we try to detect MSVC. In more detail:

* Compiler detection should timeout after a certain period of time.
  Because compiler detection executes arbitrary executables on the
  system, we could encounter a program that just hangs, or even a
  compiler that hangs on a license key or similar. A timeout
  prevents this from hanging Spack.
* Prevents things like cl-.* from being detected as potential MSVC
  installs. cl is always just cl in all cases that Spack supports.
  Change the MSVC class to indicate this.
* Prevent compilers unsupported on certain platforms from being
  detected there (i.e. don't look for MSVC on systems other than
  Windows).

The first point alone is sufficient to address #39622, but the
next two reduce the likelihood of timeouts (which is useful since
those slow down the user even if they are survivable).
 2023-09-21 10:42:12 -07:00
AMD Toolchain Support
2a9d1d444b aocl-sparse: use .libs instead of hard-coded value for library computation (#39868) 
Co-authored-by: matooley <phil.tooley@amd.com>
 2023-09-21 18:47:29 +02:00
Massimiliano Culpo
abad16c198 Restore virtuals normalization on edge construction (#40130) 
Put back normalization of the "virtuals" input as a sorted tuple. 

Without this we might get edges that differ just for the order of 
virtuals, or that have lists, which are not hashable.

Add unit-tests to prevent regressions.
 2023-09-21 17:02:34 +02:00
Massimiliano Culpo
4c0bc39054 Remove Python 3.6 from bootstrap tests on Ubuntu, add 3.11 (#40131) 2023-09-21 15:14:47 +02:00
Harmen Stoppels
501d322264 e4s: drop python 3.8 preference (#40123) 2023-09-21 15:07:21 +02:00
Manuela Kuhn
59fc09e93f py-versioneer: add 0.29 (#40076) 2023-09-21 07:22:20 -05:00
Harmen Stoppels
8bd54e2f8f cython: fix recythonize by default patch (#40096) 2023-09-21 07:09:47 -05:00
Sinan
bd8d121a23 package:pylint fix isort dependency versions (#40094) 
Co-authored-by: sbulut <sbulut@3vgeomatics.com>
 2023-09-21 06:43:44 -05:00
Lydéric Debusschère
2bd487988f [add] py-ansimarkup: new recipe required by py-cylc-flow (#39989) 
* [add] py-ansimarkup: new recipe required by py-cylc-flow

* py-ansimarkup: remove version constraint on python, add version 2.1.0
 2023-09-21 06:36:15 -05:00
Manuela Kuhn
452e56f467 py-vcrpy: add 5.1.0 (#40075) 2023-09-21 06:28:25 -05:00
Christian Glusa
62e94b0cb7 py-scikit-sparse: add 0.4.11, 0.4.12 (#40077) 2023-09-21 06:27:04 -05:00
Thomas Dickerson
5d331d4141 Bazel patch specs were too restrictive (#40084) 
These patches should always be applied - the existing Bazel code is always wrong, working on some older compilers was a lucky fluke.
 2023-09-21 05:27:11 -05:00
Harmen Stoppels
bd8d0324a9 e4s-cray: drop in ci as there are no runners (#40122) 2023-09-21 09:54:06 +00:00
Adam J. Stewart
d79a3ecc28 py-gevent: relax dependency constraints (#40117) 2023-09-21 09:00:28 +02:00
Harmen Stoppels
dac3b45387 gptune: doesnt depend on cython (#40104) 2023-09-20 15:31:45 -07:00
Dom Heinzeller
31fe78e378 ESMF package: fix netcdf static libs and variant combinations (#39738) 
Add "snapshot" variant for identifying UFS WM support
 2023-09-20 10:28:52 -07:00
Patrick Gartung
e16ca49036 Revert PR 40091 which duplicates PR 38987 (#40107) 2023-09-20 13:03:49 -04:00
Auriane R
a7ee72708a Add support for C++23 in pika and pika-algorithms packages (#40078) 
* Add C++23 support for pika

* Add C++23 support for pika-algorithms as well
 2023-09-20 09:28:25 -06:00
Auriane R
c4a53cf376 Add 23 and 26 to the cxxstd variant for boost (#40081) 2023-09-20 16:21:06 +02:00
Massimiliano Culpo
e963d02a07 Fix a leftover typo from depflag rework (#40101) 2023-09-20 14:16:53 +00:00
Harmen Stoppels
f89451b4b8 cython: add build-tools tag (#40100) 2023-09-20 15:18:04 +02:00
Raffaele Solcà
9c87506c2c DLA-Future: add v0.2.1 (#40098) 2023-09-20 14:58:23 +02:00
Auriane R
35223543e9 Add 23 to the cxxstd variant of fmt (#40080) 2023-09-20 11:20:41 +02:00
Marc Mengel
e1b22325ea Add details on error messages from requirements (#40092) 2023-09-20 06:16:29 +02:00
Patrick Gartung
2389047072 Fix error in qt5.15 building qtlocation with gcc13 (#40091) 2023-09-19 16:18:34 -06:00
Richard Berger
f49c58708b FleCSI updates (#40087) 
* flecsi: update description and flog variant help
* flecsi: use kokkos_cxx when needed
 2023-09-19 14:28:13 -06:00
Daryl W. Grunau
d916073397 eospac: expose version 6.5.7 (#40060) 
Co-authored-by: Daryl W. Grunau <dwg@lanl.gov>
 2023-09-19 11:44:20 -07:00
AMD Toolchain Support
bfa514af98 python version dependency for supporting nwchem-702 build (#40072) 
Co-authored-by: viveshar <vivek.sharma2@amd.com>
 2023-09-19 11:41:04 -07:00
Harmen Stoppels
c57e2140c2 ci: dont use nightly image tag (#40070) 2023-09-19 17:53:28 +02:00
Tuomas Koskela
9e21d490ea conquest: add new package (#40053) 2023-09-19 09:38:37 -06:00
Massimiliano Culpo
3b4ca0374e Use process pool executors for web-crawling and retrieving archives (#39888) 
Fix a race condition when searching urls, and updating a shared
set '_visited'.
 2023-09-19 15:32:59 +02:00
Harmen Stoppels
7d33c36a30 ci: drop redundant packages.yaml (#40068) 2023-09-19 11:47:48 +02:00
Massimiliano Culpo
4f14db19c4 ASP-based solver: declare deprecated versions iff config:deprecated:true (#40011) 
By default, do not let deprecated versions enter the solve.

Previously you could concretize to something deprecated, only to get errors on install.

With this commit, we get errors on concretization, so the issue is caught earlier.
 2023-09-19 09:44:49 +00:00
AMD Toolchain Support
a0dcf9620b Lammps: don't apply AOCC patches to versions containing the backport (#39844) 
Co-authored-by: Phil Tooley <phil.tooley@amd.com>
 2023-09-19 08:52:15 +02:00
Tim Haines
9a9c3a984b extrae: add versions 4.0.5, 4.0.6 (#40063) 2023-09-19 08:45:59 +02:00
Manuela Kuhn
a3543e2248 py-typing-extensions: add 4.8.0 (#40049) 2023-09-19 01:02:31 -05:00
Adam J. Stewart
4cdbb04b15 py-lightning: add v2.0.8/9 (#40058) 2023-09-18 21:13:24 -06:00
Adam J. Stewart
2594be9459 py-rarfile: add v4.1 (#40054) 2023-09-18 19:58:39 -06:00
Scott Wittenburg
8f07983ab6 adios2: add smoke tests (#39970) 2023-09-18 19:43:46 -06:00
dependabot[bot]
8e34eaaa75 build(deps): bump docker/setup-buildx-action from 2.10.0 to 3.0.0 (#39967) 
Bumps [docker/setup-buildx-action](https://github.com/docker/setup-buildx-action) from 2.10.0 to 3.0.0.
- [Release notes](https://github.com/docker/setup-buildx-action/releases)
- [Commits](885d1462b8...f95db51fdd)

---
updated-dependencies:
- dependency-name: docker/setup-buildx-action
  dependency-type: direct:production
  update-type: version-update:semver-major
...

Signed-off-by: dependabot[bot] <support@github.com>
Co-authored-by: dependabot[bot] <49699333+dependabot[bot]@users.noreply.github.com>
 2023-09-19 00:48:30 +00:00
Andrew-Dunning-NNL
7e7d373ab3 mdspan: new package (#40024) 
* new package mdspan

* Update var/spack/repos/builtin/packages/mdspan/package.py

Co-authored-by: Alec Scott <alec@bcs.sh>

* mdspan- fix style

---------

Co-authored-by: Alec Scott <alec@bcs.sh>
 2023-09-18 18:44:17 -06:00
Adam J. Stewart
dbd520f851 Better detection of Python libs/headers (#39308) 2023-09-18 15:46:33 -07:00
afzpatel
4fd7fa5fc1 new package composable kernel (#39222) 
* initial commit to add composable kernel package
* change dependencies to type build and add amdgpu_target variant
* fix spacing
* fix styling
* remove rocmmlir from miopen-hip recipe
* enable miopen with ck after 5.5.1
* fix typo
 2023-09-18 14:24:45 -07:00
Johann Gaebler
84d2097a8c r-wru: Add R package wru (#39935) 2023-09-18 14:15:56 -07:00