If the OpenMPI build finds the infiniband drivers in /usr/lib64, it adds
-Wl,-rpath -Wl,/usr/lib64 to the OpenMPI wrappers. If the wrappers are using
a compiler outside of /usr, and the OpenMPI wrappers are used to build software
outside of Spack, they will rpath /usr/lib64 into the executable which then has
GLIBC, GLIBCXX runtime errors due to it picking up GCC libraries in /usr/lib64.
This adds the directories specified in "extra_rpaths" to the OpenMPI wrappers,
which allows them to use the correct compiler when invoked outside of Spack
builds.
* Updated llvm to version 6.0.1. The previous 6.0.0 had an incorrectly declared symbol, discussed at https://reviews.llvm.org/D44140, which, amongst other things, broke py-numba. This version works fine with py-numba.
* Flag the conflict between py-numba and llvm@6.0.0
* Removed a single trailing space to satisfy checks
* First draft of a templight recipe
* Let's be explicit for now, we can be clever later on
* The clang6 version does not work, drop it
* Reorder FIXMEs more logically
* Add patch for current templight develop branch
* Create an artificial stable release of templight
* Take some additional inspiration from llvm package
* Added the templight supporting tools
* Remove old notes from the no-url branch
* Avoid unnecessary join_path
* intel-tbb: Add variant `tm` to disable transactional memory.
Some AMD or very old Intel systems don't support transactional memory. This commit adds a variant `tm` that defaults to `True`, but can be switched off to allow running on those systems.
- Previously, Spack didn't check the arguments you put in version()
directives.
- So, you could do something like this, where there are arguments for a
URL fetcher AND for a git fetcher:
version('1.0', md5='abc123', git='https://foo.bar', commit='feda2343')
- Now, we check the arguments before constructing a fetcher, to ensure
that each package has *only* arguments for a single type of fetcher.
- Also added `test_package_version_consistency()` to the `package_sanity`
test, so that all builtin packages are required to have valid
`version()` directives.
* fix to build libmatheval with guile@2.0:
* fixed formatting issues
* fixed formatting issues2
* fixed check for autoreconf and renaming of configure.in
* fixed force_autoreconf
* now patching configure, which is hopefully more robust
* minimal patches for guile 2.0 and 2.2 (disabeling unit testing for libmatheval)
* minimal patches for guile 2.0 and 2.2 (disabeling unit testing for libmatheval)
* add mofem-cephas package
* add mofem fracture module
* add user modules build and fracture modyle
* add minimal surface module
* add slepc variant
* bump mofem core lib version
* bump mofem core lib version
* bump version
* fix bug
* set upper bound to petsc version and other chanes
* fix indentation
* add minimal med file installation
* chcekc with flake8 and installation with spack packages
* add variants to med package
* upper bound to adol-c and remove obsolete internal package install
* fix basic module install
* module install from external source in extended prefix
* remove obsolte code and reverse to variant doxygen
* fix git adress
* improve packaging for mofem users modules
* fix flake8
* move dependencies after variants
* move root_cmakelists_dir right before cmake_args
* remove unused variants
* use append for single element
* replace root_cmakelists_dir
* use install_tree instead copy tree
* simplify code
* remove phase and mkdirp
* add run tests
* instal ext modules to ext_users_modules directory
* move version below url
* simplify directory name
* use underscore in variant name
* remove unused variable
* fix link to blas libs
* add missing boost dependence
* fix problem with copying module source code
* change variant name form doxygen to docs
* add expanded description
* make installation consistent with spack
* fix flake8
* make extensions installed
* code comments and minor corrections
* make slepc variant false by default
* New package: Verrou, a floating point error checker
* Clean up usage of patch
* Account for future patches in version ranges
* Manual call to autogen is not needed anymore, but extra dependencies are needed
* Use trick from automake to evade shebang length limit
* Use a glob instead of an explicit file list
* Turns out conflict() does not do what I want...
* Suggestions from @citibeth reviews
- Use 'develop' convention for the master branch
- Prefer tarballs over git repositories
- Increase robustness against default configuration
* Drop a couple of older releases with a different patching procedure
* Playing coding style golf
* Various bug squashing
- Missed master -> develop substitution
- Turns out manually calling autogen.sh is needed after all
- Missed + in spec
* More style golfing to fit in 80 columns
* Remove unnecessary mention of the develop branch
* py-pytest: Added dependency on py-setuptools-scm, as well as py-setuptools, to prevent the build from silently installing its own copy of setuptools-scm
* py-pytest: Dependency on setuptools-scm only needs to be 'build'
* The xlf_seacas.patch fails on the latest trilinos develop branch so confine it up to version 12.12.1.
* Fixing likely mistak in seacas patch version range.
* initial version of the package pyTorch (#171)
* adding version 0.4
* flake8 correction
* reordering version, removing run dependecies
* Changing depends_on type to default
* Update kaldi
always use the --fst-version otherwise it does the wrong thing with
selecting the fst version.
also enable speex by default
* Give version a more meaningful name
* Update older version with a date string instead
* gtkorvo-atl: Updated to version 2.2
* gtkorvo-dill: Updated to version 2.4
* gtkorvo-enet: Updated to version 1.3.14
* libevpath: Updated to version 4.4.0
* libffs: Updated to version 1.5
* gtkorvo-atl: Bugfix: Fixed cmake args
* gtkorvo-enet: Switched order of versions to have the latest version on the top
* gtkorvo-atl: Cleaned up cmake_args. Added conditional self.run_tests
* gtkorvo-dill: Cleaned up cmake_args. Added conditional self.run_tests
* libffs: Correction in dependency versions. Cleaned up cmake_args. Added conditional self.run_tests
* libevpath: Correction in dependency versions. Cleaned up cmake_args. Added conditional self.run_tests
* gtkorvo-atl: Removed unused option from cmake args
* Added support for uncrustify 0.67.
Since the build system changed for uncrustify at version 0.64,
I had to change the package from an AutotoolsPackage to a plain
Package and use @when annotations to build the packages differently.
* Removed blank line at end of file
* Added support for python2.6 in uncrustify configuration.
- Versions before 2.5.2 suffer from a serious security problem
(https://nvd.nist.gov/vuln/detail/CVE-2018-12021). Deleted all
versions prior to v2.5.2.
- Update homepage (looks like singularity's going Freemium).
- Use release tarball instead of automagically generated archive
tarball (digest values are more stable).
- No longer need autotools for released versions, just @devel.
- Install needs to be single-threaded, otherwise when installed as
root the various 'chmod' operations race against the copies.
preCICE (Precise Code Interaction Coupling Environment) is a
coupling library for partitioned multi-physics simulations.
Partitioned means that preCICE couples existing programs (solvers)
capable of simulating a subpart of the complete physics involved in
a simulation.
of-precice: new package
preCICE adapter for OpenFOAM
* First draft of amrvis package file.
* More additions to amrvis.
* Formatting.
* Forcing compiler environment variables to point to spack mpi compilers when using mpi.
* Disabling intel compiler for amrvis.
* Comments.
* Refining amrvis package file.
* Moving library and include locations variables to be inserted at the first lines of the makefile.
* Globbing amrvis binary instead of constructing its name.
* Making env variable setting consistent and fixing globbing of executable.
* Using iglob instead of glob.
* Turning MPI on by default for Amrvis.
* ENH: Building OpenFOAM sub-packages (issue #8579)
* Some support for packages building with OpenFOAM
- Adjust the wrappers calling the OpenFOAM Allwmake script. Have them
look for a Allwmake-spack file first, which is assumed to contain
special adjustments for compiling with spack.
This file could be delivered as part of a tarball (which is unlikely)
or generated on the fly by the spack sub-package as part of its
patch or configure stage.
CONFIG: change the default paraview variant for openfoam to be False
- the different combinations of paraview backends, off-screen etc
make it difficult to suggest that building with paraview as
a standard dependency makes much sense.
Additionally, building paraview with qt can become quite an issue.
So it makes much more sense to only enable that upon request.
ENH: add a +vtk variant.
- for VTK with off-screen rendering to be used by the runTimePostProcessing
function object, which is a fairly simple framework for generating images of
some OpenFOAM derived objects (eg, sampling planes).
SPACK spec problem:
- reflect the flex restriction impose by the scotch dependency within
the openfoam spec as well, as partial workaround for buggy or annoying
spec resolution.
OTHER:
- updated the backstop foamEtcFile file to include args handling
as per the OpenFOAM-v1806 updates.
* new version: OpenFOAM-v1806
- https://www.openfoam.com/releases/openfoam-v1806/
