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Author SHA1 Message Date
Dewi
f4f396745e amg2023 package: cmake build (#39618) 
Switch from makefile to CMake-based build. CMake support is currently
in a specific branch of the amg2023 repo, so add this branch as a
version in the package.
 2023-08-29 15:47:36 -07:00
Loïc Pottier
f3c6d892b1 Upgrading py-pika versions (#39670) 
* Upgraded py-pika versions

Signed-off-by: Loïc Pottier <pottier1@llnl.gov>

* Upgraded py-pika versions

Signed-off-by: Loïc Pottier <pottier1@llnl.gov>

* added variants and adding setuptools constraint

Signed-off-by: Loïc Pottier <pottier1@llnl.gov>

* missing setuptools for older versions

Signed-off-by: Loïc Pottier <pottier1@llnl.gov>

---------

Signed-off-by: Loïc Pottier <pottier1@llnl.gov>
 2023-08-29 17:20:22 -05:00
Adam J. Stewart
2f5988cec7 libpng: add libs property (#39638) 2023-08-29 14:00:28 -07:00
Tom Payerle
44922f734d boxlib: Add BL_USE_PARTICLES cmake var (#39660) 
Set BL_USE_PARTICLES to 1, which should case boxlib build to include Particles classes
according to CMakeLists.txt.

This seems to fix #18172
The aforementioned error seems to occur in cmake phase while processing
CMakeLists.txt in Src/C_ParticleLib, and appears to be due to the
variable containing the list of src files for the add_library() call
being empty unless BL_USE_PARTICLES is set to 1.
 2023-08-29 13:57:02 -07:00
G-Ragghianti
144e657c58 Added release 2023.08.25 (#39665) 2023-08-29 13:54:31 -07:00
Jen Herting
6f48fe2b6f [mathematica] added version 13.0.1 (#39675) 2023-08-29 13:47:33 -07:00
Jim Edwards
fcd03adc02 Jedwards/parallelio262 (#39676) 
* add parallelio@2.6.2
* add comments
 2023-08-29 13:44:54 -07:00
Alberto Sartori
0620b954be justbuild: add v1.2.1 (#39679) 2023-08-29 15:23:22 -04:00
Jen Herting
6174b829f7 [py-tiktoken] added verison 0.3.1 (#39677) 2023-08-29 14:28:39 -04:00
Adam J. Stewart
0d4b1c6a73 py-torchmetrics: add v1.1.1 (#39685) 2023-08-29 13:25:29 -05:00
Matthew Thompson
fb9797bd67 mapl: Fix pflogger dependency (#39683) 2023-08-29 14:22:52 -04:00
Jen Herting
4eee3c12c1 [py-gradio] New package (#39304) 
* [py-gradio] New package

* [py-gradio] added deps from requirements.txt

* [py-gradio] py-pillow -> pil
 2023-08-29 14:08:54 -04:00
Adam J. Stewart
3e5f9a2138 py-lightly: add v1.4.17 (#39686) 2023-08-29 11:05:02 -07:00
LydDeb
8295a45999 py-distributed: use py-jinja2 versions from 2.10.3 (#39658) 
In depends_on py-jinja2, use versions from 2.10.3, instead of strict equality, according to the pyproject.toml of py-distributed 2023.4.1
 2023-08-29 12:09:48 -05:00
Harmen Stoppels
5138c71d34 Revert "Add style tool to fix fish file formatting (#39155)" (#39680) 
This reverts commit 70c71e8f93.
 2023-08-29 18:12:19 +02:00
Harmen Stoppels
eef9939c21 Automated git version fixes (#39637) 
Use full length commit sha instead of short prefixes, to improve
reproducibility (future clashes) and guard against compromised repos and
man in the middle attacks.

Abbreviated commit shas are expanded to full length, to guard against future
clashes on short hash. It also guards against compromised repos and
man in the middle attacks, where attackers can easily fabricate a malicious
commit with a shasum prefix collision.

Versions with just tags now also get a commit sha, which can later be used to
check for retagged commits.
 2023-08-29 16:33:03 +02:00
dependabot[bot]
ffddaabaa0 build(deps): bump sphinx from 7.2.3 to 7.2.4 in /lib/spack/docs (#39668) 
Bumps [sphinx](https://github.com/sphinx-doc/sphinx) from 7.2.3 to 7.2.4.
- [Release notes](https://github.com/sphinx-doc/sphinx/releases)
- [Changelog](https://github.com/sphinx-doc/sphinx/blob/master/CHANGES)
- [Commits](https://github.com/sphinx-doc/sphinx/compare/v7.2.3...v7.2.4)

---
updated-dependencies:
- dependency-name: sphinx
  dependency-type: direct:production
  update-type: version-update:semver-patch
...

Signed-off-by: dependabot[bot] <support@github.com>
Co-authored-by: dependabot[bot] <49699333+dependabot[bot]@users.noreply.github.com>
 2023-08-29 14:45:06 +02:00
dependabot[bot]
f664d1edaa build(deps): bump docker/setup-buildx-action from 2.9.1 to 2.10.0 (#39669) 
Bumps [docker/setup-buildx-action](https://github.com/docker/setup-buildx-action) from 2.9.1 to 2.10.0.
- [Release notes](https://github.com/docker/setup-buildx-action/releases)
- [Commits](4c0219f9ac...885d1462b8)

---
updated-dependencies:
- dependency-name: docker/setup-buildx-action
  dependency-type: direct:production
  update-type: version-update:semver-minor
...

Signed-off-by: dependabot[bot] <support@github.com>
Co-authored-by: dependabot[bot] <49699333+dependabot[bot]@users.noreply.github.com>
 2023-08-29 14:44:42 +02:00
Harmen Stoppels
6d5d1562bd fmt: 10.1.1 (#39664) 2023-08-29 10:47:42 +02:00
Adam J. Stewart
70c71e8f93 Add style tool to fix fish file formatting (#39155) 2023-08-28 22:16:44 -05:00
Jonathon Anderson
d9d1eb24f9 modules: copy matched config to prevent bleed (#39421) 2023-08-28 15:03:29 -07:00
kwryankrattiger
cef59ad0bf Patch VTK to enable python 3.8 in VTK 8.2 (#38735) 
* VTK: Add patch for python 3.8 support

* CI: Re-enable VisIt in CI

* Configure spec matrix for stack with VisIt

* Add pugixml dep for 8.2.0

* Make VTK and ParaView consistent on proj dep

* OpenMPI 3: provides MP support by default

* Add details on proj dep in ParaView

* Add python 3.8 to test mock repo

* Patches to get VisIt VTK interface

* CI: Disable VisIt with GUI in DAV
 2023-08-28 16:56:31 -05:00
Brian Vanderwende
a1e117a98b singularityce: arg handling fix (#39663) 2023-08-28 15:52:57 -04:00
Loris Ercole
cb855d5ffd kokkos: avoid setting multiple cuda_arch (#38723) 
The kokkos package does not support building with cuda with multiple
`cuda_arch`. An error is raised if multiple `cuda_arch` are specified.
 2023-08-28 14:13:05 -04:00
Matthew Thompson
3866ff0096 mapl: add 2.40, deprecate old versions (#39615) 
* Add MAPL 2.40, deprecated old versions
* Undo some variant changes
* style fixes
* Make variants reflect Cmake options
* Remove pnetcdf variant
* Clean up depends_on
 2023-08-28 11:11:03 -07:00
Todd Gamblin
6dc167e43d security: change SECURITY.md to recommend GitHub's private reporting (#39651) 
GitHub's beta private security issue reporting feature is enabled on the Spack repo now,
so we can change `SECURITY.md` to recommend using it instead of `maintainers@spack.io`.

- [x] Update `SECURITY.md` to direct people to the GitHub security tab.
- [x] Update working in `SECURITY.md` to say "last two major releases" with a link to
      the releases page, instead of explicitly listing release names. This way we don't have
      to update it (which we keep forgetting to do).
 2023-08-28 18:06:17 +00:00
Ashwin Kumar Karnad
0fd085be8e octopus: specify the scalapack library not the directory (#39109) 
* octopus: specify the scalapack library not the directory
* octopus: use spec.scalapack.libs.ld_flags
 2023-08-28 09:57:24 -07:00
Massimiliano Culpo
74fba221f1 GnuPG: add v2.4.3 (#39654) 
Also updates a few dependencies
 2023-08-28 10:58:16 -04:00
Harmen Stoppels
deeeb86067 Fix a few issues with git versions / moving targets in packages (#39635) 2023-08-28 15:48:13 +02:00
Jen Herting
98daf5b7ec py-scikit-optimize: add v0.9.0 and move gptune patch (#38738) 
Co-authored-by: liuyangzhuan <liuyangzhuan@gmail.com>
 2023-08-28 07:43:25 -04:00
Harmen Stoppels
8a3d98b632 Remove mxnet from darwin aarch64 since theres no supported release (#39644) 2023-08-28 12:21:10 +02:00
Harmen Stoppels
0cc945b367 libarchive: use openssl by default (#39640) 2023-08-28 09:23:33 +02:00
Stan Tomov
e732155e8c magma: add v2.7.2 (#39645) 2023-08-28 08:57:59 +02:00
Harmen Stoppels
c07fb833a9 libarchive: new versions (#39646) 2023-08-28 08:52:59 +02:00
Harmen Stoppels
7d566b481f libuv: add versions up to v1.46.0 (#39647) 2023-08-28 08:52:13 +02:00
Christopher Christofi
a72e5e762e py-igraph: new package with version 0.10.6 (#39179) 2023-08-27 14:46:21 -05:00
Nichols A. Romero
0eb22ef770 llvm: ensure runtimes set rpaths (#39641) 
Ensure that CMAKE_INSTALL_RPATH_USE_LINK_PATH is propagated to sub-make when building runtimes.
 2023-08-27 08:41:59 +02:00
Peter Scheibel
95f78440f1 External ROCm: add example configuration (#39602) 
* add an example of an external rocm configuration
* include more info
* generalize section to all GPU support
 2023-08-26 15:46:25 -07:00
John W. Parent
74a51aba50 CMake: add versions 3.26.4|5 and 3.27.* (#39628) 
Co-authored-by: Harmen Stoppels <me@harmenstoppels.nl>
 2023-08-26 21:26:41 +02:00
Daryl W. Grunau
b370ecfbda py-scipy: re-apply scipy/scipy#14935 workaround (#39555) 
* re-apply scipy/scipy#14935 workaround

* restrict to %intel and eliminate Version() check

---------

Co-authored-by: Daryl W. Grunau <dwg@lanl.gov>
 2023-08-26 08:44:57 -05:00
LydDeb
04d55b7600 py-dask: use py-jinja2 versions from 2.10.3 (#39631) 
In depends_on py-jinja2, use versions from 2.10.3, instead of strict equality, according to the pyproject.toml of dask 2023.4.1
 2023-08-26 00:56:39 -05:00
Tim Gymnich
d695438851 Update package.py (#39619) 2023-08-26 00:55:03 -05:00
Nichols A. Romero
f0447d63ad llvm: fix +lldb optional deps and add lua variant (#39579) 
* llvm: fix +lldb optional deps, add lua variant

* use good old conflicts

---------

Co-authored-by: Harmen Stoppels <me@harmenstoppels.nl>
 2023-08-25 17:46:33 -05:00
Mikael Simberg
e8a7a04f14 Add gperftools 2.12 (#39623) 2023-08-25 14:57:00 -07:00
Paul R. C. Kent
23316f0352 QMCPACK: add v3.17.1 (#39626) 2023-08-25 14:55:36 -07:00
Brian Van Essen
b3433cb872 LBANN package: strip hostname on non-LC systems. (#39601) 2023-08-25 14:55:24 -07:00
James Smillie
349ba83bc6 Windows symlinking support (#38599) 
This reapplies 66f7540, which adds supports for hardlinks/junctions on
Windows systems where developer mode is not enabled.

The commit was reverted on account of multiple issues:

* Checks added to prevent dangling symlinks were interfering with
  existing CI builds on Linux (i.e. builds that otherwise succeed were
  failing for creating dangling symlinks).
* The logic also updated symlinking to perform redirection of relative
  paths, which lead to malformed symlinks.

This commit fixes these issues.
 2023-08-25 12:18:19 -07:00
Thomas-Ulrich
ecfd9ef12b add memalign option to petsc to be used with tandem (#37282) 2023-08-25 09:03:53 -05:00
Loris Ercole
4502351659 intel-oneapi-mkl: add hpcx-mpi to the list of supported MPI libs (#39625) 
Co-authored-by: Loris Ercole <a-lercole@microsoft.com>
 2023-08-25 08:53:22 -04:00
Adam J. Stewart
8a08f09ac0 py-scipy: add v1.11.2 (#39515) 2023-08-25 06:03:22 -04:00