* WarpX: Python on pyAMReX
Long overdue update for WarpX: in 2024, we updated our Python
bindings to rely on the new pyAMReX package. This deprecates the old
`py-warpx` package and adds a new dependency and variant to WarpX.
Also deprecates old versions that we will not continue to support.
* Update Cloud/E4S Pipelines for WarpX
`py-warpx` is replaced by `warpx +python`
oneAPI does not support IPO/LTO: diable for `py-amrex` even though
pybind11 strongly encourages it.
"spack buildcache push" for partially installed environments pushes all it
can by default, and only dumps errors towards the end.
If --fail-fast is provided, error out before pushing anything if any
of the packages is uninstalled
oci build caches using parallel push now use futures to ensure pushing
goes in best-effort style.
The old concretizer is still used to bootstrap clingo from source. If we switch to a DAG model
where compilers are treated as nodes, we need to either:
1. fix the old concretizer to support this (which is a lot of work and possibly research), or
2. bootstrap `clingo` without the old concretizer.
This PR takes the second approach and gets rid of the old concretizer code. To bootstrap
`clingo`, we store some concrete spec prototypes as JSON, select one according to the
coarse-grained system architecture, and tweak them according to the current host.
The old concretizer and related dead code are removed. In particular, this removes
`Spec.normalize()` and related methods, which were used in many unit-tests to set
up the test context. The tests have been updated not to use `normalize()`.
- [x] Bootstrap clingo concretization based on a JSON file
- [x] Bootstrap clingo *before* patchelf
- [x] Remove any use of the old concretizer, including:
* Remove only_clingo and only_original fixtures
* Remove _old_concretize and _new_concretize
* Remove _concretize_together_old
* Remove _concretize_together_new
* Remove any use of `SPACK_TEST_SOLVER`
* Simplify CI jobs
- [x] ensure bootstrapping `clingo` works on on Darwin and Windows
- [x] Raise an intelligible error when a compiler is missing
- [x] Ensure bootstrapping works on FreeBSD
- [x] remove normalize and related methods
Signed-off-by: Todd Gamblin <tgamblin@llnl.gov>
`setup-env.sh` is meant to be sourced, not executed directly.
By revoking execution permissions, users who accidentally execute
the script will receive an error instead of seeing no effect.
* Remove execution permission from `setup-env.sh` and friends
* Don't make output file executable in `spack commands --update-completion`
---------
Co-authored-by: Todd Gamblin <tgamblin@llnl.gov>
Signed-off-by: Todd Gamblin <tgamblin@llnl.gov>
* e4s ci: enable some disabled specs
* comment out cp2k +cuda due to unsupported cuda_arch
* comment out dealii+cuda due to concretize error
* work through concretize errors
* e4s: comment out failing builds
* e4s stack: disabled non-building specs
* comment out failing specs
* comment out failing specs
* cleanup comments
Add language dependencies `c`, `cxx`, and `fortran`.
These `depends_on` statements are auto-generated based on file extensions found
in source tarballs/zipfiles.
The `# generated` comment can be removed by package maintainers after
validating correctness.
Originally if you had `x -> y -> z`, and an env with `x` in its speclist that is concretized but not installed, then `spack find -c y` would not show anything. This was intended: `spack find` has up-until-now only ever listed out installed specs (and `-c` was for adding a preamble section about roots).
This changes `spack find` so:
* `-c` makes it search through all concretized specs in the env (in a sense it is anticipated that a concretized environment would serve as a "speculative" DB and users may want to query it like they query the DB outside of envs)
* Adds a `-i/--install-status` option, equivalent to `-I` from `spack spec`
* Shows install status for either `-c` or `-i`
* As a side effect to prior point, `spack find -i` can now distinguish different installation states (upstream/external)
Examples:
```
$ spack find -r
==> In environment findtest
==> 1 root specs
- raja
==> 6 installed packages (not shown)
==> 12 concretized packages to be installed (not shown)
```
```
$ spack find
==> In environment findtest
==> 1 root specs
- raja
-- darwin-ventura-m1 / apple-clang@14.0.3 -----------------------
berkeley-db@18.1.40 bzip2@1.0.8 diffutils@3.10 gmake@4.4.1 gnuconfig@2022-09-17 libiconv@1.17
==> 6 installed packages
==> 12 concretized packages to be installed (show with `spack find -c`)
```
```
$ spack find -c
==> In environment findtest
==> 1 root specs
- raja
-- darwin-ventura-m1 / apple-clang@14.0.3 -----------------------
[+] berkeley-db@18.1.40 [+] bzip2@1.0.8 - cmake@3.29.4 [+] diffutils@3.10 [+] gmake@4.4.1 [+] libiconv@1.17 - nghttp2@1.62.0 - pkgconf@2.2.0 - readline@8.2
- blt@0.6.2 - camp@2024.02.1 - curl@8.7.1 - gdbm@1.23 [+] gnuconfig@2022-09-17 - ncurses@6.5 - perl@5.38.2 - raja@2024.02.2 - zlib-ng@2.1.6
==> 6 installed packages
==> 12 concretized packages to be installed
```
$ spack -E find
...
==> 82 installed packages
```
* update e4s stacks
* adios2 +rocm: disable kokkos due to spack issue #44832
* comment out mgard+cuda due to spack issue #44833
* comment out cabana, legion, arborx due to kokkos spack issue #44832
* comment out slepc, petsc due to petsc spack issue #44600
* comment out adios2+rocm due to kokkos rocm spack issue #44832
* comment out kokkos due to spack issue #44832
* e4s external rocm ci: bump rocm stack to v6.1.1
* comment out exago+rocm due to issue with raja@0.14.0 see spack issue #44593
* comment out adios2+rocm due to spack issue #44594
* comment out petsc+rocm due to spack issue #44600
* comment out sundials+rocm due to spack issue #44601
* comment out slepc+rocm due to petsc spack issue #44600
* comment out tau+rocm due to spack issue #44659
* comment out ecp-data-vis-sdk due to spack issue #44745
* packages: register rocm-core as external
* re-enable tau due to issue #44659 having been resolved
* use latest ci image: ecpe4s/ubuntu22.04-runner-amd64-gcc-11.4-rocm6.1.1:2024.06.17
* comment out paraview due to spack issue #44745
* comment out ecp-data-vis-sdk +vtkm due to issue https://gitlab.spack.io/spack/spack/-/jobs/11632511
* glew: rework dependency on gl
This simplifies the package and ensures a single gl implementation is
pulled in. Before we were adding direct dependencies, and those are
not unified through the virtual.
* mesa-demos: rework dependency on gl
This simplifies the package and ensures a single gl implementation is
pulled in. Before we were adding direct dependencies, and those are
not unified through the virtual.
* mesa-glu: rework dependency on gl
This simplifies the package and ensures a single gl implementation is
pulled in. Before we were adding direct dependencies, and those are
not unified through the virtual.
* paraview: fix dependency on glew
* mesa: group dependency on when("+glx")
* Add missing dependency on libxml2
* paraview: remove the "osmesa" and "egl" variant
Instead, enforce consistency using the "gl" virtual that allows
only one provider.
* visit: remove osmesa variant
* Disable paraview in the aws-isc stacks
* data-vis-sdk: rework constrains to enforce front-ends
* e4s-power: remove redundant paraview
* Pipelines: update osmesa variants
* trilinos-catalyst-ioss-adapter: make gl a run dependency
* Remove mesa18 and libosmesa
mesa18 was introduced in #19528 as a way to maintain the old
autotools build of mesa separate from the new meson build.
We could add a second build system to mesa, but since mesa18 has
been deprecated for a long time, we'll just remove it.
libosmesa was used to multiplex the gl provider between mesa18
and mesa, and is thus unecessary. Remove it to reduce complexity
in the graphical stack.
* Remove references to mesa18 and libosmesa
* vtk: rework dependency on gl and osmesa
* memsurfer: rework dependency on vtk
* visit: minimal fix to avoid having both osmesa and glx
