Commit Graph

22070 Commits

Author SHA1 Message Date
Erik Schnetter
fffc4c4846
z3: New version 4.11.2 (#33725) 2022-11-06 11:05:57 +01:00
Emilio J. Padrón González
e550f48b17
ADD version 0.19.0 in py-gym recipe (#33701)
* ADD version 0.19.0 in py-gym recipe

* Fix py-gym download url and dependencies for v0.19.0

* Fix stupid error in previous commit: no change in py-cloudpickle dep

* Yes, I should've paid more attention! O:)

I think now it is right, thanks!
2022-11-05 16:28:58 -07:00
Adam J. Stewart
0f32f7d0e9
py-transformers: add v4.24.0 (#33716)
* py-transformers: add v4.24.0

* Internet access still required
2022-11-05 12:38:49 -05:00
Erik Schnetter
c9fcb8aadc
openssh: New version 9.1p1 (#33668)
Co-authored-by: Bernhard Kaindl <43588962+bernhardkaindl@users.noreply.github.com>
2022-11-05 15:34:59 +01:00
Tom Scogland
3346c0918b
Fix relocation to avoid overwriting merged constant strings (#32253)
Compilers and linker optimize string constants for space by aliasing
them when one is a suffix of another. For gcc / binutils this happens
already at -O1, due to -fmerge-constants. This means that we have
to take care during relocation to always preserve a certain length
of the suffix of those prefixes that are C-strings. 

In this commit we pick length 7 as a safe suffix length, assuming the
suffix is typically the 7 characters from the hash (i.e. random), so
it's unlikely to alias with any string constant used in the sources.

In general we now pad shortened strings from the left with leading
dir seperators, but in the case of C-strings that are much shorter
and don't share a common suffix (due to projections), we do allow
shrinking the C-string, appending a null, and retaining the old part
of the prefix.

Also when rewiring, we ensure that the new hash preserves the last
7 bytes of the old hash.

Co-authored-by: Harmen Stoppels <harmenstoppels@gmail.com>
2022-11-05 11:09:35 +01:00
Adam J. Stewart
d79cba1a77
py-matplotlib: add v3.6.2 (#33683) 2022-11-04 22:38:04 -06:00
wspear
34724cae87
Updated tau 2.32 hash (#33718) 2022-11-04 20:07:33 -07:00
Erik Schnetter
d7cb790f88
openssl: New version 1.1.1s (#33664)
This is a security update.
2022-11-04 18:18:05 -06:00
Adam J. Stewart
7c0b3f6374
py-pytorch-lightning: add conflicts for py-torch~distributed (#33710) 2022-11-05 00:00:23 +01:00
Greg Becker
53fbaa5dcd
Cray support: use linux platform for newer craype versions (#29392)
Newer versions of the CrayPE for EX systems have standalone compiler executables for CCE and compiler wrappers for Cray MPICH. With those, we can treat the cray systems as part of the linux platform rather than having a separate cray platform.

This PR:
- [x] Changes cray platform detection to ignore EX systems with Craype version 21.10 or later
- [x] Changes the cce compiler to be detectable via paths
- [x] Changes the spack compiler wrapper to understand the executable names for the standalone cce compiler (`craycc`, `crayCC`, `crayftn`).
2022-11-04 14:52:11 -07:00
Sinan
fb5ff901c0
package/py-pykml: add new py3 compatible version (#33631)
* package/py-pykml: add new py3 compatible version

* fix bugs

Co-authored-by: sbulut <sbulut@3vgeomatics.com>
2022-11-04 14:34:50 -07:00
kent-cheung-arm
e85b308212
arm-forge: add 22.1 and 22.1.1. (#33584) 2022-11-04 20:18:20 +01:00
Alberto Sartori
b6da8635ec
add justbuild package (#33689) 2022-11-04 11:59:27 -07:00
Dom Heinzeller
33e5e77225
Python package: fix .libs on macOS with external Python (#33410)
For some instances of externally-provided Python (e.g. Homebrew),
the LDLIBRARY/LIBRARY config variables don't actually refer to
libraries and should therefore be excluded from ".libs".
2022-11-04 11:52:27 -07:00
Moritz Kern
13565df027
add elephant version v0.11.2 (#33663) 2022-11-04 12:34:16 -06:00
Stephen McDowell
6f8e242db8
ECP-SDK: fixup +hdf5 +cuda contraints (#33676)
Only enable the hdf5-vfd-gds package if it can compile.

- hdf5-vfd-gds needs cuda@11.7.1+ to be able to `find_library` for cuFile.
- Only enable hdf5-vfd-gds in the sdk if cuda@11.7.1+ is available.
  If an earlier version of cuda is being used, do not depend on the
  hdf5-vfd-gds package at all.
2022-11-04 13:26:58 -05:00
Vicente Bolea
ac9172fdbc
paraview: static cuda is not supported (#33246) 2022-11-04 18:52:28 +01:00
Erik Schnetter
1a77f3e2e0
gnutls: add v3.7.8 (#33708) 2022-11-04 18:06:11 +01:00
Erik Schnetter
7d4373f526
libressl: New package (#33709) 2022-11-04 18:05:23 +01:00
Greg Becker
2caec6bd27
Bugfix: glvis new builder interface (#33704)
* take two

* Add missing import statement

* Group dependencies together

* Extract libtiff arguments

* Extract libpng arguments

* Push preamble variable into png_args and tiff_args

* Extract setting args associated with the screenshot variant

* Inlined a few variables

* Modify only build targets and install targets

Co-authored-by: Massimiliano Culpo <massimiliano.culpo@gmail.com>
2022-11-04 08:42:06 -07:00
Ashwin Kumar
bde4d1e38c
Octopus: refactor AutotoolsPackage (#33526) 2022-11-04 14:59:45 +01:00
snehring
49d7aa21fd
orca: add v5.0.3 (#33649) 2022-11-04 12:26:59 +01:00
Jordan Galby
b1f896e6c7
Fix non-parallel make under depfile jobserver (#32862)
When a package asks for non-parallel make, we need to force `make -j1` because just doing `make` will run in parallel under jobserver (e.g. `spack env depfile`).

We now always add `-j1` when asked for a non-parallel execution (even if there is no jobserver).

And each `MakeExecutable` can now ask for jobserver support or not. For example: the default `ninja` does not support jobserver so spack applies the default `-j`, but `ninja@kitware` or `ninja-fortran` does, so spack doesn't add `-j`.

Tips: you can run `SPACK_INSTALL_FLAGS=-j1 make -f spack-env-depfile.make -j8` to avoid massive job-spawning because of build tools that don't support jobserver (ninja).
2022-11-04 02:05:22 -07:00
Satish Balay
34969b7072
petsc: fix configure option to use double-hyphen (#33685) 2022-11-03 20:22:09 -06:00
Lucas
72b11c1883
Adding gegelati library package (#33686)
* testing ssh key
* test
* LR : Creating the packge to install the gegelati app
* LR : Gegelati, a TPG C++ library added and fully tested
* LR : adjusting for fork
* LR: taking out the boilerplates
* LR: taking out the rest
2022-11-03 18:34:00 -07:00
wspear
b3e41736e6
Add version 2.32 to tau package (#33702) 2022-11-03 18:24:23 -07:00
Greg Becker
79fcc0848f
Update glvis for new builder interface (#33699) 2022-11-03 17:10:39 -07:00
Harmen Stoppels
b52be75978
Experimental binding of shared ELF libraries (#31948)
Adds another post install hook that loops over the install prefix, looking for shared libraries type of ELF files, and sets the soname to their own absolute paths.

The idea being, whenever somebody links against those libraries, the linker copies the soname (which is the absolute path to the library) as a "needed" library, so that at runtime the dynamic loader realizes the needed library is a path which should be loaded directly without searching.

As a result:

1. rpaths are not used for the fixed/static list of needed libraries in the dynamic section (only for _actually_ dynamically loaded libraries through `dlopen`), which largely solves the issue that Spack's rpaths are a heuristic (`<prefix>/lib` and `<prefix>/lib64` might not be where libraries really are...)
2. improved startup times (no library search required)
2022-11-03 17:34:00 -06:00
Adrien Cotte
7fc49c42ee
Add new versions to py-clustershell (#33694) 2022-11-03 17:11:28 -05:00
snehring
5b39059472
tassel: adding version 5.2.86 (#33697) 2022-11-03 15:02:36 -07:00
snehring
e8cc1a60ea
spades: adding version 3.15.5 (#33698) 2022-11-03 14:44:31 -07:00
eugeneswalker
d2d01ea488
flux-core: allow ncurses >= 6.2 (#33599) 2022-11-03 14:44:02 -07:00
Zack Galbreath
ccc716f617
Limit the number of parallel jobs launched by Tensile (#33692) 2022-11-03 15:26:03 -06:00
Miroslav Stoyanov
08bee718a2
new cmake requirement (#33679) 2022-11-03 11:28:08 -07:00
Nicolas Cornu
da020d1bb8
Bump HighFive to v2.5.0 (#33691)
* Bump HighFive to v2.5.0
* Adding myself as maintainers
* fix format with black
2022-11-03 11:34:15 -06:00
Cyrus Harrison
ca93c8b57a
fides: remove unneeded variants (#32521) 2022-11-03 11:33:59 -06:00
Greg Sjaardema
16acd25053
SEACAS: further refactor (#33673)
* SEACAS: Update package.py to handle new SEACAS project name

The base project name for the SEACAS project has changed from
"SEACASProj" to "SEACAS" as of @2022-10-14, so the package
needed to be updated to use the new project name when needed.

The refactor also changes several:
    "-DSome_CMAKE_Option:BOOL=ON"
to
   define("Some_CMAKE_Option", True)

* SEACAS: Additional refactorings

* Replaced all cmake "-Dsomething=other" lines with either `define`
or `define_from_variant` functions.

Consolidated the application (fortran, legacy, all) enabling lines
into loops over the code names.  Easier to see categorization of
applications and also to add/move/remove an application

Reordered some lines; general cleanup and restructuring.

* Address flake8 issues

* Remove trailing whitespace

* Reformat using black
2022-11-03 11:42:25 -04:00
snehring
9925f3b779
isescan: add version 1.7.2.3 (#33675) 2022-11-03 09:29:59 -06:00
Mikael Simberg
68a5fe84a7
Add pika 0.10.0 (#33659)
Co-authored-by: Harmen Stoppels <harmenstoppels@gmail.com>
2022-11-03 12:28:38 +01:00
Jose E. Roman
30da20c1bc
New patch release SLEPc 3.18.1 (#33661) 2022-11-03 03:58:16 -06:00
Michael Kuhn
707e56dea8
glib: add 2.74.1 (#33650) 2022-11-03 02:50:20 -06:00
Sinan
2264b75ca0
add new package: py-pylatex (#33573)
* add new package: py-pylatex

* fix bugs

* add extras indicated in setup.py

* Update var/spack/repos/builtin/packages/py-pylatex/package.py

Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>

* Update var/spack/repos/builtin/packages/py-pylatex/package.py

Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>

* improvements

* remove git merge related lines

* tidy

* Update var/spack/repos/builtin/packages/py-pylatex/package.py

Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>

* remove variant

* [@spackbot] updating style on behalf of Sinan81

Co-authored-by: sbulut <sbulut@3vgeomatics.com>
Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>
Co-authored-by: Sinan81 <Sinan81@users.noreply.github.com>
2022-11-02 22:38:17 -06:00
Harmen Stoppels
b652fe72d7
remove deptype_query remnants and fix incorrect deptypes kwarg (#33670)
* remove deptype_query remnants
* deptypes -> deptype

These arguments haven't existed since 2017, but `traverse` now fails on unknown **kwargs, so they have finally popped up.
2022-11-02 14:24:59 -07:00
Robert Pavel
4d5f2e3a37
Initial Version of Hypar Spackage (#33647)
Initial spackage for Hypar proxy app
2022-11-02 14:10:19 -07:00
Martin Diehl
4c535a2037
update: damask3.0.0-alpha7 (#33634)
* damask3.0.0-alpha7
* [@spackbot] updating style on behalf of MarDiehl

Co-authored-by: MarDiehl <MarDiehl@users.noreply.github.com>
2022-11-02 12:23:19 -07:00
Weiqun Zhang
2a516aadb1
amrex: add v22.11 (#33671) 2022-11-02 11:59:50 -07:00
Carson Woods
0661c1f531
Package: add new package py-fitter (#33652)
* Add new python package

* Fix isort style issues

* Add additional dependencies

* Add additional dependencies

* Remove comments

* Add additional explicit dependencies
2022-11-02 12:42:10 -06:00
Sinan
4b549560f9
package_qgis_fix_pythonpath (#33655)
* package_qgis_fix_pythonpath

* check if bindings enabled also

Co-authored-by: sbulut <sbulut@3vgeomatics.com>
2022-11-02 13:40:05 -05:00
Greg Sjaardema
d4ea74bf80
SEACAS: Update package.py to handle new SEACAS project name (#33646)
The base project name for the SEACAS project has changed from
"SEACASProj" to "SEACAS" as of @2022-10-14, so the package
needed to be updated to use the new project name when needed.

The refactor also changes several:
    "-DSome_CMAKE_Option:BOOL=ON"
to
   define("Some_CMAKE_Option", True)
2022-11-02 11:50:15 -05:00
Paul R. C. Kent
cff94f8e71
llvm: add 15.0.3, 15.0.4 (#33651)
* v1503

* v1504
2022-11-02 10:46:08 -06:00