Compare commits
1 Commits
bugfix/inv
...
cws/config
Author | SHA1 | Date | |
---|---|---|---|
![]() |
93b14e6c19 |
@@ -1,4 +0,0 @@
|
||||
{
|
||||
"image": "ghcr.io/spack/ubuntu20.04-runner-amd64-gcc-11.4:2023.08.01",
|
||||
"postCreateCommand": "./.devcontainer/postCreateCommand.sh"
|
||||
}
|
@@ -1,20 +0,0 @@
|
||||
#!/bin/bash
|
||||
|
||||
# Load spack environment at terminal startup
|
||||
cat <<EOF >> /root/.bashrc
|
||||
. /workspaces/spack/share/spack/setup-env.sh
|
||||
EOF
|
||||
|
||||
# Load spack environment in this script
|
||||
. /workspaces/spack/share/spack/setup-env.sh
|
||||
|
||||
# Ensure generic targets for maximum matching with buildcaches
|
||||
spack config --scope site add "packages:all:require:[target=x86_64_v3]"
|
||||
spack config --scope site add "concretizer:targets:granularity:generic"
|
||||
|
||||
# Find compiler and install gcc-runtime
|
||||
spack compiler find --scope site
|
||||
|
||||
# Setup buildcaches
|
||||
spack mirror add --scope site develop https://binaries.spack.io/develop
|
||||
spack buildcache keys --install --trust
|
@@ -1,5 +1,3 @@
|
||||
# .git-blame-ignore-revs
|
||||
# Formatted entire codebase with black 23
|
||||
603569e321013a1a63a637813c94c2834d0a0023
|
||||
# Formatted entire codebase with black 22
|
||||
# Formatted entire codebase with black
|
||||
f52f6e99dbf1131886a80112b8c79dfc414afb7c
|
||||
|
1
.gitattributes
vendored
1
.gitattributes
vendored
@@ -1,4 +1,3 @@
|
||||
*.py diff=python
|
||||
*.lp linguist-language=Prolog
|
||||
lib/spack/external/* linguist-vendored
|
||||
*.bat text eol=crlf
|
8
.github/ISSUE_TEMPLATE/build_error.yml
vendored
8
.github/ISSUE_TEMPLATE/build_error.yml
vendored
@@ -9,7 +9,7 @@ body:
|
||||
Thanks for taking the time to report this build failure. To proceed with the report please:
|
||||
1. Title the issue `Installation issue: <name-of-the-package>`.
|
||||
2. Provide the information required below.
|
||||
|
||||
|
||||
We encourage you to try, as much as possible, to reduce your problem to the minimal example that still reproduces the issue. That would help us a lot in fixing it quickly and effectively!
|
||||
- type: textarea
|
||||
id: reproduce
|
||||
@@ -29,9 +29,7 @@ body:
|
||||
description: |
|
||||
Please post the error message from spack inside the `<details>` tag below:
|
||||
value: |
|
||||
<details><summary>Error message</summary>
|
||||
|
||||
<pre>
|
||||
<details><summary>Error message</summary><pre>
|
||||
...
|
||||
</pre></details>
|
||||
validations:
|
||||
@@ -55,7 +53,7 @@ body:
|
||||
Please upload the following files:
|
||||
* **`spack-build-out.txt`**
|
||||
* **`spack-build-env.txt`**
|
||||
|
||||
|
||||
They should be present in the stage directory of the failing build. Also upload any `config.log` or similar file if one exists.
|
||||
- type: markdown
|
||||
attributes:
|
||||
|
6
.github/ISSUE_TEMPLATE/feature_request.yml
vendored
6
.github/ISSUE_TEMPLATE/feature_request.yml
vendored
@@ -1,4 +1,4 @@
|
||||
name: "\U0001F38A Feature request"
|
||||
name: "\U0001F38A Feature request"
|
||||
description: Suggest adding a feature that is not yet in Spack
|
||||
labels: [feature]
|
||||
body:
|
||||
@@ -29,11 +29,13 @@ body:
|
||||
attributes:
|
||||
label: General information
|
||||
options:
|
||||
- label: I have run `spack --version` and reported the version of Spack
|
||||
required: true
|
||||
- label: I have searched the issues of this repo and believe this is not a duplicate
|
||||
required: true
|
||||
- type: markdown
|
||||
attributes:
|
||||
value: |
|
||||
If you want to ask a question about the tool (how to use it, what it can currently do, etc.), try the `#general` channel on [our Slack](https://slack.spack.io/) first. We have a welcoming community and chances are you'll get your reply faster and without opening an issue.
|
||||
|
||||
|
||||
Other than that, thanks for taking the time to contribute to Spack!
|
||||
|
4
.github/ISSUE_TEMPLATE/test_error.yml
vendored
4
.github/ISSUE_TEMPLATE/test_error.yml
vendored
@@ -21,9 +21,7 @@ body:
|
||||
description: |
|
||||
Please post the error message from spack inside the `<details>` tag below:
|
||||
value: |
|
||||
<details><summary>Error message</summary>
|
||||
|
||||
<pre>
|
||||
<details><summary>Error message</summary><pre>
|
||||
...
|
||||
</pre></details>
|
||||
validations:
|
||||
|
10
.github/dependabot.yml
vendored
10
.github/dependabot.yml
vendored
@@ -5,13 +5,3 @@ updates:
|
||||
directory: "/"
|
||||
schedule:
|
||||
interval: "daily"
|
||||
# Requirements to build documentation
|
||||
- package-ecosystem: "pip"
|
||||
directory: "/lib/spack/docs"
|
||||
schedule:
|
||||
interval: "daily"
|
||||
# Requirements to run style checks
|
||||
- package-ecosystem: "pip"
|
||||
directory: "/.github/workflows/style"
|
||||
schedule:
|
||||
interval: "daily"
|
||||
|
6
.github/pull_request_template.md
vendored
6
.github/pull_request_template.md
vendored
@@ -1,6 +0,0 @@
|
||||
<!--
|
||||
Remember that `spackbot` can help with your PR in multiple ways:
|
||||
- `@spackbot help` shows all the commands that are currently available
|
||||
- `@spackbot fix style` tries to push a commit to fix style issues in this PR
|
||||
- `@spackbot re-run pipeline` runs the pipelines again, if you have write access to the repository
|
||||
-->
|
45
.github/workflows/audit.yaml
vendored
45
.github/workflows/audit.yaml
vendored
@@ -17,53 +17,28 @@ concurrency:
|
||||
jobs:
|
||||
# Run audits on all the packages in the built-in repository
|
||||
package-audits:
|
||||
runs-on: ${{ matrix.system.os }}
|
||||
strategy:
|
||||
matrix:
|
||||
system:
|
||||
- { os: windows-latest, shell: 'powershell Invoke-Expression -Command "./share/spack/qa/windows_test_setup.ps1"; {0}' }
|
||||
- { os: ubuntu-latest, shell: bash }
|
||||
- { os: macos-latest, shell: bash }
|
||||
defaults:
|
||||
run:
|
||||
shell: ${{ matrix.system.shell }}
|
||||
runs-on: ubuntu-latest
|
||||
steps:
|
||||
- uses: actions/checkout@a5ac7e51b41094c92402da3b24376905380afc29
|
||||
- uses: actions/setup-python@82c7e631bb3cdc910f68e0081d67478d79c6982d
|
||||
- uses: actions/checkout@93ea575cb5d8a053eaa0ac8fa3b40d7e05a33cc8 # @v2
|
||||
- uses: actions/setup-python@13ae5bb136fac2878aff31522b9efb785519f984 # @v2
|
||||
with:
|
||||
python-version: ${{inputs.python_version}}
|
||||
- name: Install Python packages
|
||||
run: |
|
||||
pip install --upgrade pip setuptools pytest coverage[toml]
|
||||
- name: Setup for Windows run
|
||||
if: runner.os == 'Windows'
|
||||
run: |
|
||||
python -m pip install --upgrade pywin32
|
||||
pip install --upgrade pip six setuptools pytest codecov 'coverage[toml]<=6.2'
|
||||
- name: Package audits (with coverage)
|
||||
if: ${{ inputs.with_coverage == 'true' && runner.os != 'Windows' }}
|
||||
if: ${{ inputs.with_coverage == 'true' }}
|
||||
run: |
|
||||
. share/spack/setup-env.sh
|
||||
coverage run $(which spack) audit packages
|
||||
coverage run $(which spack) -d audit externals
|
||||
coverage combine
|
||||
coverage xml
|
||||
- name: Package audits (without coverage)
|
||||
if: ${{ inputs.with_coverage == 'false' && runner.os != 'Windows' }}
|
||||
if: ${{ inputs.with_coverage == 'false' }}
|
||||
run: |
|
||||
. share/spack/setup-env.sh
|
||||
spack -d audit packages
|
||||
spack -d audit externals
|
||||
- name: Package audits (without coverage)
|
||||
if: ${{ runner.os == 'Windows' }}
|
||||
run: |
|
||||
. share/spack/setup-env.sh
|
||||
spack -d audit packages
|
||||
./share/spack/qa/validate_last_exit.ps1
|
||||
spack -d audit externals
|
||||
./share/spack/qa/validate_last_exit.ps1
|
||||
- uses: codecov/codecov-action@125fc84a9a348dbcf27191600683ec096ec9021c
|
||||
. share/spack/setup-env.sh
|
||||
$(which spack) audit packages
|
||||
- uses: codecov/codecov-action@d9f34f8cd5cb3b3eb79b3e4b5dae3a16df499a70 # @v2.1.0
|
||||
if: ${{ inputs.with_coverage == 'true' }}
|
||||
with:
|
||||
flags: unittests,audits
|
||||
token: ${{ secrets.CODECOV_TOKEN }}
|
||||
verbose: true
|
||||
flags: unittests,linux,audits
|
||||
|
7
.github/workflows/bootstrap-test.sh
vendored
7
.github/workflows/bootstrap-test.sh
vendored
@@ -1,8 +1,7 @@
|
||||
#!/bin/bash
|
||||
set -e
|
||||
set -ex
|
||||
source share/spack/setup-env.sh
|
||||
$PYTHON bin/spack bootstrap disable github-actions-v0.4
|
||||
$PYTHON bin/spack bootstrap disable spack-install
|
||||
$PYTHON bin/spack $SPACK_FLAGS solve zlib
|
||||
$PYTHON bin/spack bootstrap untrust spack-install
|
||||
$PYTHON bin/spack -d solve zlib
|
||||
tree $BOOTSTRAP/store
|
||||
exit 0
|
||||
|
355
.github/workflows/bootstrap.yml
vendored
355
.github/workflows/bootstrap.yml
vendored
@@ -13,22 +13,116 @@ concurrency:
|
||||
cancel-in-progress: true
|
||||
|
||||
jobs:
|
||||
distros-clingo-sources:
|
||||
fedora-clingo-sources:
|
||||
runs-on: ubuntu-latest
|
||||
container: ${{ matrix.image }}
|
||||
strategy:
|
||||
matrix:
|
||||
image: ["fedora:latest", "opensuse/leap:latest"]
|
||||
container: "fedora:latest"
|
||||
steps:
|
||||
- name: Setup Fedora
|
||||
if: ${{ matrix.image == 'fedora:latest' }}
|
||||
- name: Install dependencies
|
||||
run: |
|
||||
dnf install -y \
|
||||
bzip2 curl file gcc-c++ gcc gcc-gfortran git gzip \
|
||||
bzip2 curl file gcc-c++ gcc gcc-gfortran git gnupg2 gzip \
|
||||
make patch unzip which xz python3 python3-devel tree \
|
||||
cmake bison bison-devel libstdc++-static
|
||||
- name: Setup OpenSUSE
|
||||
if: ${{ matrix.image == 'opensuse/leap:latest' }}
|
||||
- name: Checkout
|
||||
uses: actions/checkout@93ea575cb5d8a053eaa0ac8fa3b40d7e05a33cc8
|
||||
with:
|
||||
fetch-depth: 0
|
||||
- name: Setup non-root user
|
||||
run: |
|
||||
# See [1] below
|
||||
git config --global --add safe.directory /__w/spack/spack
|
||||
useradd spack-test && mkdir -p ~spack-test
|
||||
chown -R spack-test . ~spack-test
|
||||
- name: Setup repo
|
||||
shell: runuser -u spack-test -- bash {0}
|
||||
run: |
|
||||
git --version
|
||||
. .github/workflows/setup_git.sh
|
||||
- name: Bootstrap clingo
|
||||
shell: runuser -u spack-test -- bash {0}
|
||||
run: |
|
||||
source share/spack/setup-env.sh
|
||||
spack bootstrap untrust github-actions-v0.2
|
||||
spack external find cmake bison
|
||||
spack -d solve zlib
|
||||
tree ~/.spack/bootstrap/store/
|
||||
|
||||
ubuntu-clingo-sources:
|
||||
runs-on: ubuntu-latest
|
||||
container: "ubuntu:latest"
|
||||
steps:
|
||||
- name: Install dependencies
|
||||
env:
|
||||
DEBIAN_FRONTEND: noninteractive
|
||||
run: |
|
||||
apt-get update -y && apt-get upgrade -y
|
||||
apt-get install -y \
|
||||
bzip2 curl file g++ gcc gfortran git gnupg2 gzip \
|
||||
make patch unzip xz-utils python3 python3-dev tree \
|
||||
cmake bison
|
||||
- name: Checkout
|
||||
uses: actions/checkout@93ea575cb5d8a053eaa0ac8fa3b40d7e05a33cc8
|
||||
with:
|
||||
fetch-depth: 0
|
||||
- name: Setup non-root user
|
||||
run: |
|
||||
# See [1] below
|
||||
git config --global --add safe.directory /__w/spack/spack
|
||||
useradd spack-test && mkdir -p ~spack-test
|
||||
chown -R spack-test . ~spack-test
|
||||
- name: Setup repo
|
||||
shell: runuser -u spack-test -- bash {0}
|
||||
run: |
|
||||
git --version
|
||||
. .github/workflows/setup_git.sh
|
||||
- name: Bootstrap clingo
|
||||
shell: runuser -u spack-test -- bash {0}
|
||||
run: |
|
||||
source share/spack/setup-env.sh
|
||||
spack bootstrap untrust github-actions-v0.2
|
||||
spack external find cmake bison
|
||||
spack -d solve zlib
|
||||
tree ~/.spack/bootstrap/store/
|
||||
|
||||
ubuntu-clingo-binaries-and-patchelf:
|
||||
runs-on: ubuntu-latest
|
||||
container: "ubuntu:latest"
|
||||
steps:
|
||||
- name: Install dependencies
|
||||
env:
|
||||
DEBIAN_FRONTEND: noninteractive
|
||||
run: |
|
||||
apt-get update -y && apt-get upgrade -y
|
||||
apt-get install -y \
|
||||
bzip2 curl file g++ gcc gfortran git gnupg2 gzip \
|
||||
make patch unzip xz-utils python3 python3-dev tree
|
||||
- name: Checkout
|
||||
uses: actions/checkout@93ea575cb5d8a053eaa0ac8fa3b40d7e05a33cc8
|
||||
with:
|
||||
fetch-depth: 0
|
||||
- name: Setup non-root user
|
||||
run: |
|
||||
# See [1] below
|
||||
git config --global --add safe.directory /__w/spack/spack
|
||||
useradd spack-test && mkdir -p ~spack-test
|
||||
chown -R spack-test . ~spack-test
|
||||
- name: Setup repo
|
||||
shell: runuser -u spack-test -- bash {0}
|
||||
run: |
|
||||
git --version
|
||||
. .github/workflows/setup_git.sh
|
||||
- name: Bootstrap clingo
|
||||
shell: runuser -u spack-test -- bash {0}
|
||||
run: |
|
||||
source share/spack/setup-env.sh
|
||||
spack -d solve zlib
|
||||
tree ~/.spack/bootstrap/store/
|
||||
|
||||
opensuse-clingo-sources:
|
||||
runs-on: ubuntu-latest
|
||||
container: "opensuse/leap:latest"
|
||||
steps:
|
||||
- name: Install dependencies
|
||||
run: |
|
||||
# Harden CI by applying the workaround described here: https://www.suse.com/support/kb/doc/?id=000019505
|
||||
zypper update -y || zypper update -y
|
||||
@@ -37,114 +131,90 @@ jobs:
|
||||
make patch unzip which xz python3 python3-devel tree \
|
||||
cmake bison
|
||||
- name: Checkout
|
||||
uses: actions/checkout@a5ac7e51b41094c92402da3b24376905380afc29
|
||||
uses: actions/checkout@93ea575cb5d8a053eaa0ac8fa3b40d7e05a33cc8
|
||||
with:
|
||||
fetch-depth: 0
|
||||
- name: Setup repo
|
||||
run: |
|
||||
# See [1] below
|
||||
git config --global --add safe.directory /__w/spack/spack
|
||||
git --version
|
||||
. .github/workflows/setup_git.sh
|
||||
- name: Bootstrap clingo
|
||||
run: |
|
||||
source share/spack/setup-env.sh
|
||||
spack bootstrap disable github-actions-v0.5
|
||||
spack bootstrap disable github-actions-v0.4
|
||||
spack bootstrap untrust github-actions-v0.2
|
||||
spack external find cmake bison
|
||||
spack -d solve zlib
|
||||
tree ~/.spack/bootstrap/store/
|
||||
|
||||
clingo-sources:
|
||||
runs-on: ${{ matrix.runner }}
|
||||
strategy:
|
||||
matrix:
|
||||
runner: ['macos-13', 'macos-14', "ubuntu-latest"]
|
||||
macos-clingo-sources:
|
||||
runs-on: macos-latest
|
||||
steps:
|
||||
- name: Setup macOS
|
||||
if: ${{ matrix.runner != 'ubuntu-latest' }}
|
||||
- name: Install dependencies
|
||||
run: |
|
||||
brew install cmake bison tree
|
||||
brew install cmake bison@2.7 tree
|
||||
- name: Checkout
|
||||
uses: actions/checkout@a5ac7e51b41094c92402da3b24376905380afc29
|
||||
with:
|
||||
fetch-depth: 0
|
||||
- uses: actions/setup-python@82c7e631bb3cdc910f68e0081d67478d79c6982d
|
||||
with:
|
||||
python-version: "3.12"
|
||||
uses: actions/checkout@93ea575cb5d8a053eaa0ac8fa3b40d7e05a33cc8
|
||||
- name: Bootstrap clingo
|
||||
run: |
|
||||
source share/spack/setup-env.sh
|
||||
spack bootstrap disable github-actions-v0.5
|
||||
spack bootstrap disable github-actions-v0.4
|
||||
export PATH=/usr/local/opt/bison@2.7/bin:$PATH
|
||||
spack bootstrap untrust github-actions-v0.2
|
||||
spack external find --not-buildable cmake bison
|
||||
spack -d solve zlib
|
||||
tree ~/.spack/bootstrap/store/
|
||||
|
||||
gnupg-sources:
|
||||
runs-on: ${{ matrix.runner }}
|
||||
macos-clingo-binaries:
|
||||
runs-on: ${{ matrix.macos-version }}
|
||||
strategy:
|
||||
matrix:
|
||||
runner: [ 'macos-13', 'macos-14', "ubuntu-latest" ]
|
||||
macos-version: ['macos-11', 'macos-12']
|
||||
steps:
|
||||
- name: Setup macOS
|
||||
if: ${{ matrix.runner != 'ubuntu-latest' }}
|
||||
- name: Install dependencies
|
||||
run: |
|
||||
brew install tree
|
||||
# Remove GnuPG since we want to bootstrap it
|
||||
sudo rm -rf /usr/local/bin/gpg
|
||||
- name: Setup Ubuntu
|
||||
if: ${{ matrix.runner == 'ubuntu-latest' }}
|
||||
run: |
|
||||
sudo rm -rf $(which gpg) $(which gpg2) $(which patchelf)
|
||||
- name: Checkout
|
||||
uses: actions/checkout@a5ac7e51b41094c92402da3b24376905380afc29
|
||||
with:
|
||||
fetch-depth: 0
|
||||
- name: Bootstrap GnuPG
|
||||
run: |
|
||||
source share/spack/setup-env.sh
|
||||
spack solve zlib
|
||||
spack bootstrap disable github-actions-v0.5
|
||||
spack bootstrap disable github-actions-v0.4
|
||||
spack -d gpg list
|
||||
tree ~/.spack/bootstrap/store/
|
||||
|
||||
from-binaries:
|
||||
runs-on: ${{ matrix.runner }}
|
||||
strategy:
|
||||
matrix:
|
||||
runner: ['macos-13', 'macos-14', "ubuntu-latest"]
|
||||
steps:
|
||||
- name: Setup macOS
|
||||
if: ${{ matrix.runner != 'ubuntu-latest' }}
|
||||
run: |
|
||||
brew install tree
|
||||
# Remove GnuPG since we want to bootstrap it
|
||||
sudo rm -rf /usr/local/bin/gpg
|
||||
- name: Setup Ubuntu
|
||||
if: ${{ matrix.runner == 'ubuntu-latest' }}
|
||||
run: |
|
||||
sudo rm -rf $(which gpg) $(which gpg2) $(which patchelf)
|
||||
- name: Checkout
|
||||
uses: actions/checkout@a5ac7e51b41094c92402da3b24376905380afc29
|
||||
with:
|
||||
fetch-depth: 0
|
||||
- uses: actions/setup-python@82c7e631bb3cdc910f68e0081d67478d79c6982d
|
||||
with:
|
||||
python-version: |
|
||||
3.8
|
||||
3.9
|
||||
3.10
|
||||
3.11
|
||||
3.12
|
||||
- name: Set bootstrap sources
|
||||
run: |
|
||||
source share/spack/setup-env.sh
|
||||
spack bootstrap disable github-actions-v0.4
|
||||
spack bootstrap disable spack-install
|
||||
uses: actions/checkout@93ea575cb5d8a053eaa0ac8fa3b40d7e05a33cc8
|
||||
- name: Bootstrap clingo
|
||||
run: |
|
||||
set -e
|
||||
for ver in '3.8' '3.9' '3.10' '3.11' '3.12' ; do
|
||||
set -ex
|
||||
for ver in '3.6' '3.7' '3.8' '3.9' '3.10' ; do
|
||||
not_found=1
|
||||
ver_dir="$(find $RUNNER_TOOL_CACHE/Python -wholename "*/${ver}.*/*/bin" | grep . || true)"
|
||||
echo "Testing $ver_dir"
|
||||
if [[ -d "$ver_dir" ]] ; then
|
||||
if $ver_dir/python --version ; then
|
||||
export PYTHON="$ver_dir/python"
|
||||
not_found=0
|
||||
old_path="$PATH"
|
||||
export PATH="$ver_dir:$PATH"
|
||||
./bin/spack-tmpconfig -b ./.github/workflows/bootstrap-test.sh
|
||||
export PATH="$old_path"
|
||||
fi
|
||||
fi
|
||||
# NOTE: test all pythons that exist, not all do on 12
|
||||
done
|
||||
|
||||
ubuntu-clingo-binaries:
|
||||
runs-on: ubuntu-20.04
|
||||
steps:
|
||||
- name: Checkout
|
||||
uses: actions/checkout@93ea575cb5d8a053eaa0ac8fa3b40d7e05a33cc8
|
||||
with:
|
||||
fetch-depth: 0
|
||||
- name: Setup repo
|
||||
run: |
|
||||
git --version
|
||||
. .github/workflows/setup_git.sh
|
||||
- name: Bootstrap clingo
|
||||
run: |
|
||||
set -ex
|
||||
for ver in '2.7' '3.6' '3.7' '3.8' '3.9' '3.10' ; do
|
||||
not_found=1
|
||||
ver_dir="$(find $RUNNER_TOOL_CACHE/Python -wholename "*/${ver}.*/*/bin" | grep . || true)"
|
||||
echo "Testing $ver_dir"
|
||||
if [[ -d "$ver_dir" ]] ; then
|
||||
echo "Testing $ver_dir"
|
||||
if $ver_dir/python --version ; then
|
||||
export PYTHON="$ver_dir/python"
|
||||
not_found=0
|
||||
@@ -159,9 +229,118 @@ jobs:
|
||||
exit 1
|
||||
fi
|
||||
done
|
||||
|
||||
ubuntu-gnupg-binaries:
|
||||
runs-on: ubuntu-latest
|
||||
container: "ubuntu:latest"
|
||||
steps:
|
||||
- name: Install dependencies
|
||||
env:
|
||||
DEBIAN_FRONTEND: noninteractive
|
||||
run: |
|
||||
apt-get update -y && apt-get upgrade -y
|
||||
apt-get install -y \
|
||||
bzip2 curl file g++ gcc patchelf gfortran git gzip \
|
||||
make patch unzip xz-utils python3 python3-dev tree
|
||||
- name: Checkout
|
||||
uses: actions/checkout@93ea575cb5d8a053eaa0ac8fa3b40d7e05a33cc8
|
||||
with:
|
||||
fetch-depth: 0
|
||||
- name: Setup non-root user
|
||||
run: |
|
||||
# See [1] below
|
||||
git config --global --add safe.directory /__w/spack/spack
|
||||
useradd spack-test && mkdir -p ~spack-test
|
||||
chown -R spack-test . ~spack-test
|
||||
- name: Setup repo
|
||||
shell: runuser -u spack-test -- bash {0}
|
||||
run: |
|
||||
git --version
|
||||
. .github/workflows/setup_git.sh
|
||||
- name: Bootstrap GnuPG
|
||||
shell: runuser -u spack-test -- bash {0}
|
||||
run: |
|
||||
source share/spack/setup-env.sh
|
||||
spack bootstrap untrust spack-install
|
||||
spack -d gpg list
|
||||
tree ~/.spack/bootstrap/store/
|
||||
|
||||
ubuntu-gnupg-sources:
|
||||
runs-on: ubuntu-latest
|
||||
container: "ubuntu:latest"
|
||||
steps:
|
||||
- name: Install dependencies
|
||||
env:
|
||||
DEBIAN_FRONTEND: noninteractive
|
||||
run: |
|
||||
apt-get update -y && apt-get upgrade -y
|
||||
apt-get install -y \
|
||||
bzip2 curl file g++ gcc patchelf gfortran git gzip \
|
||||
make patch unzip xz-utils python3 python3-dev tree \
|
||||
gawk
|
||||
- name: Checkout
|
||||
uses: actions/checkout@93ea575cb5d8a053eaa0ac8fa3b40d7e05a33cc8
|
||||
with:
|
||||
fetch-depth: 0
|
||||
- name: Setup non-root user
|
||||
run: |
|
||||
# See [1] below
|
||||
git config --global --add safe.directory /__w/spack/spack
|
||||
useradd spack-test && mkdir -p ~spack-test
|
||||
chown -R spack-test . ~spack-test
|
||||
- name: Setup repo
|
||||
shell: runuser -u spack-test -- bash {0}
|
||||
run: |
|
||||
git --version
|
||||
. .github/workflows/setup_git.sh
|
||||
- name: Bootstrap GnuPG
|
||||
shell: runuser -u spack-test -- bash {0}
|
||||
run: |
|
||||
source share/spack/setup-env.sh
|
||||
spack solve zlib
|
||||
spack bootstrap untrust github-actions-v0.2
|
||||
spack -d gpg list
|
||||
tree ~/.spack/bootstrap/store/
|
||||
|
||||
macos-gnupg-binaries:
|
||||
runs-on: macos-latest
|
||||
steps:
|
||||
- name: Install dependencies
|
||||
run: |
|
||||
brew install tree
|
||||
# Remove GnuPG since we want to bootstrap it
|
||||
sudo rm -rf /usr/local/bin/gpg
|
||||
- name: Checkout
|
||||
uses: actions/checkout@93ea575cb5d8a053eaa0ac8fa3b40d7e05a33cc8
|
||||
- name: Bootstrap GnuPG
|
||||
run: |
|
||||
source share/spack/setup-env.sh
|
||||
spack bootstrap untrust spack-install
|
||||
spack -d gpg list
|
||||
tree ~/.spack/bootstrap/store/
|
||||
|
||||
macos-gnupg-sources:
|
||||
runs-on: macos-latest
|
||||
steps:
|
||||
- name: Install dependencies
|
||||
run: |
|
||||
brew install gawk tree
|
||||
# Remove GnuPG since we want to bootstrap it
|
||||
sudo rm -rf /usr/local/bin/gpg
|
||||
- name: Checkout
|
||||
uses: actions/checkout@93ea575cb5d8a053eaa0ac8fa3b40d7e05a33cc8
|
||||
- name: Bootstrap GnuPG
|
||||
run: |
|
||||
source share/spack/setup-env.sh
|
||||
spack solve zlib
|
||||
spack bootstrap untrust github-actions-v0.2
|
||||
spack -d gpg list
|
||||
tree ~/.spack/bootstrap/store/
|
||||
|
||||
|
||||
# [1] Distros that have patched git to resolve CVE-2022-24765 (e.g. Ubuntu patching v2.25.1)
|
||||
# introduce breaking behaviorso we have to set `safe.directory` in gitconfig ourselves.
|
||||
# See:
|
||||
# - https://github.blog/2022-04-12-git-security-vulnerability-announced/
|
||||
# - https://github.com/actions/checkout/issues/760
|
||||
# - http://changelogs.ubuntu.com/changelogs/pool/main/g/git/git_2.25.1-1ubuntu3.3/changelog
|
||||
|
76
.github/workflows/build-containers.yml
vendored
76
.github/workflows/build-containers.yml
vendored
@@ -13,7 +13,7 @@ on:
|
||||
paths:
|
||||
- '.github/workflows/build-containers.yml'
|
||||
- 'share/spack/docker/*'
|
||||
- 'share/spack/templates/container/*'
|
||||
- 'share/templates/container/*'
|
||||
- 'lib/spack/spack/container/*'
|
||||
# Let's also build & tag Spack containers on releases.
|
||||
release:
|
||||
@@ -38,40 +38,32 @@ jobs:
|
||||
# Meaning of the various items in the matrix list
|
||||
# 0: Container name (e.g. ubuntu-bionic)
|
||||
# 1: Platforms to build for
|
||||
# 2: Base image (e.g. ubuntu:22.04)
|
||||
# 2: Base image (e.g. ubuntu:18.04)
|
||||
dockerfile: [[amazon-linux, 'linux/amd64,linux/arm64', 'amazonlinux:2'],
|
||||
[centos7, 'linux/amd64,linux/arm64,linux/ppc64le', 'centos:7'],
|
||||
[centos-stream, 'linux/amd64,linux/arm64,linux/ppc64le', 'centos:stream'],
|
||||
[leap15, 'linux/amd64,linux/arm64,linux/ppc64le', 'opensuse/leap:15'],
|
||||
[ubuntu-bionic, 'linux/amd64,linux/arm64,linux/ppc64le', 'ubuntu:18.04'],
|
||||
[ubuntu-focal, 'linux/amd64,linux/arm64,linux/ppc64le', 'ubuntu:20.04'],
|
||||
[ubuntu-jammy, 'linux/amd64,linux/arm64,linux/ppc64le', 'ubuntu:22.04'],
|
||||
[ubuntu-noble, 'linux/amd64,linux/arm64,linux/ppc64le', 'ubuntu:24.04'],
|
||||
[almalinux8, 'linux/amd64,linux/arm64,linux/ppc64le', 'almalinux:8'],
|
||||
[almalinux9, 'linux/amd64,linux/arm64,linux/ppc64le', 'almalinux:9'],
|
||||
[rockylinux8, 'linux/amd64,linux/arm64', 'rockylinux:8'],
|
||||
[rockylinux9, 'linux/amd64,linux/arm64', 'rockylinux:9'],
|
||||
[fedora39, 'linux/amd64,linux/arm64,linux/ppc64le', 'fedora:39'],
|
||||
[fedora40, 'linux/amd64,linux/arm64,linux/ppc64le', 'fedora:40']]
|
||||
[ubuntu-jammy, 'linux/amd64,linux/arm64,linux/ppc64le', 'ubuntu:22.04']]
|
||||
name: Build ${{ matrix.dockerfile[0] }}
|
||||
if: github.repository == 'spack/spack'
|
||||
steps:
|
||||
- name: Checkout
|
||||
uses: actions/checkout@a5ac7e51b41094c92402da3b24376905380afc29
|
||||
uses: actions/checkout@93ea575cb5d8a053eaa0ac8fa3b40d7e05a33cc8 # @v2
|
||||
|
||||
- uses: docker/metadata-action@8e5442c4ef9f78752691e2d8f8d19755c6f78e81
|
||||
id: docker_meta
|
||||
with:
|
||||
images: |
|
||||
ghcr.io/${{ github.repository_owner }}/${{ matrix.dockerfile[0] }}
|
||||
${{ github.repository_owner }}/${{ matrix.dockerfile[0] }}
|
||||
tags: |
|
||||
type=schedule,pattern=nightly
|
||||
type=schedule,pattern=develop
|
||||
type=semver,pattern={{version}}
|
||||
type=semver,pattern={{major}}.{{minor}}
|
||||
type=semver,pattern={{major}}
|
||||
type=ref,event=branch
|
||||
type=ref,event=pr
|
||||
- name: Set Container Tag Normal (Nightly)
|
||||
run: |
|
||||
container="${{ matrix.dockerfile[0] }}:latest"
|
||||
echo "container=${container}" >> $GITHUB_ENV
|
||||
echo "versioned=${container}" >> $GITHUB_ENV
|
||||
|
||||
# On a new release create a container with the same tag as the release.
|
||||
- name: Set Container Tag on Release
|
||||
if: github.event_name == 'release'
|
||||
run: |
|
||||
versioned="${{matrix.dockerfile[0]}}:${GITHUB_REF##*/}"
|
||||
echo "versioned=${versioned}" >> $GITHUB_ENV
|
||||
|
||||
- name: Generate the Dockerfile
|
||||
env:
|
||||
@@ -88,19 +80,19 @@ jobs:
|
||||
fi
|
||||
|
||||
- name: Upload Dockerfile
|
||||
uses: actions/upload-artifact@65462800fd760344b1a7b4382951275a0abb4808
|
||||
uses: actions/upload-artifact@3cea5372237819ed00197afe530f5a7ea3e805c8
|
||||
with:
|
||||
name: dockerfiles_${{ matrix.dockerfile[0] }}
|
||||
name: dockerfiles
|
||||
path: dockerfiles
|
||||
|
||||
- name: Set up QEMU
|
||||
uses: docker/setup-qemu-action@68827325e0b33c7199eb31dd4e31fbe9023e06e3
|
||||
uses: docker/setup-qemu-action@8b122486cedac8393e77aa9734c3528886e4a1a8 # @v1
|
||||
|
||||
- name: Set up Docker Buildx
|
||||
uses: docker/setup-buildx-action@d70bba72b1f3fd22344832f00baa16ece964efeb
|
||||
uses: docker/setup-buildx-action@c74574e6c82eeedc46366be1b0d287eff9085eb6 # @v1
|
||||
|
||||
- name: Log in to GitHub Container Registry
|
||||
uses: docker/login-action@e92390c5fb421da1463c202d546fed0ec5c39f20
|
||||
uses: docker/login-action@f4ef78c080cd8ba55a85445d5b36e214a81df20a # @v1
|
||||
with:
|
||||
registry: ghcr.io
|
||||
username: ${{ github.actor }}
|
||||
@@ -108,27 +100,21 @@ jobs:
|
||||
|
||||
- name: Log in to DockerHub
|
||||
if: github.event_name != 'pull_request'
|
||||
uses: docker/login-action@e92390c5fb421da1463c202d546fed0ec5c39f20
|
||||
uses: docker/login-action@f4ef78c080cd8ba55a85445d5b36e214a81df20a # @v1
|
||||
with:
|
||||
username: ${{ secrets.DOCKERHUB_USERNAME }}
|
||||
password: ${{ secrets.DOCKERHUB_TOKEN }}
|
||||
|
||||
- name: Build & Deploy ${{ matrix.dockerfile[0] }}
|
||||
uses: docker/build-push-action@2cdde995de11925a030ce8070c3d77a52ffcf1c0
|
||||
uses: docker/build-push-action@c84f38281176d4c9cdb1626ffafcd6b3911b5d94 # @v2
|
||||
with:
|
||||
context: dockerfiles/${{ matrix.dockerfile[0] }}
|
||||
platforms: ${{ matrix.dockerfile[1] }}
|
||||
push: ${{ github.event_name != 'pull_request' }}
|
||||
tags: ${{ steps.docker_meta.outputs.tags }}
|
||||
labels: ${{ steps.docker_meta.outputs.labels }}
|
||||
|
||||
merge-dockerfiles:
|
||||
runs-on: ubuntu-latest
|
||||
needs: deploy-images
|
||||
steps:
|
||||
- name: Merge Artifacts
|
||||
uses: actions/upload-artifact/merge@65462800fd760344b1a7b4382951275a0abb4808
|
||||
with:
|
||||
name: dockerfiles
|
||||
pattern: dockerfiles_*
|
||||
delete-merged: true
|
||||
cache-from: type=gha
|
||||
cache-to: type=gha,mode=max
|
||||
tags: |
|
||||
spack/${{ env.container }}
|
||||
spack/${{ env.versioned }}
|
||||
ghcr.io/spack/${{ env.container }}
|
||||
ghcr.io/spack/${{ env.versioned }}
|
||||
|
16
.github/workflows/ci.yaml
vendored
16
.github/workflows/ci.yaml
vendored
@@ -18,9 +18,14 @@ jobs:
|
||||
prechecks:
|
||||
needs: [ changes ]
|
||||
uses: ./.github/workflows/valid-style.yml
|
||||
secrets: inherit
|
||||
with:
|
||||
with_coverage: ${{ needs.changes.outputs.core }}
|
||||
audit-ancient-python:
|
||||
uses: ./.github/workflows/audit.yaml
|
||||
needs: [ changes ]
|
||||
with:
|
||||
with_coverage: ${{ needs.changes.outputs.core }}
|
||||
python_version: 2.7
|
||||
all-prechecks:
|
||||
needs: [ prechecks ]
|
||||
runs-on: ubuntu-latest
|
||||
@@ -36,12 +41,12 @@ jobs:
|
||||
core: ${{ steps.filter.outputs.core }}
|
||||
packages: ${{ steps.filter.outputs.packages }}
|
||||
steps:
|
||||
- uses: actions/checkout@a5ac7e51b41094c92402da3b24376905380afc29
|
||||
- uses: actions/checkout@93ea575cb5d8a053eaa0ac8fa3b40d7e05a33cc8 # @v2
|
||||
if: ${{ github.event_name == 'push' }}
|
||||
with:
|
||||
fetch-depth: 0
|
||||
# For pull requests it's not necessary to checkout the code
|
||||
- uses: dorny/paths-filter@de90cc6fb38fc0963ad72b210f1f284cd68cea36
|
||||
- uses: dorny/paths-filter@b2feaf19c27470162a626bd6fa8438ae5b263721
|
||||
id: filter
|
||||
with:
|
||||
# See https://github.com/dorny/paths-filter/issues/56 for the syntax used below
|
||||
@@ -71,19 +76,16 @@ jobs:
|
||||
if: ${{ github.repository == 'spack/spack' && needs.changes.outputs.bootstrap == 'true' }}
|
||||
needs: [ prechecks, changes ]
|
||||
uses: ./.github/workflows/bootstrap.yml
|
||||
secrets: inherit
|
||||
unit-tests:
|
||||
if: ${{ github.repository == 'spack/spack' && needs.changes.outputs.core == 'true' }}
|
||||
needs: [ prechecks, changes ]
|
||||
uses: ./.github/workflows/unit_tests.yaml
|
||||
secrets: inherit
|
||||
windows:
|
||||
if: ${{ github.repository == 'spack/spack' && needs.changes.outputs.core == 'true' }}
|
||||
needs: [ prechecks ]
|
||||
uses: ./.github/workflows/windows_python.yml
|
||||
secrets: inherit
|
||||
all:
|
||||
needs: [ windows, unit-tests, bootstrap ]
|
||||
needs: [ windows, unit-tests, bootstrap, audit-ancient-python ]
|
||||
runs-on: ubuntu-latest
|
||||
steps:
|
||||
- name: Success
|
||||
|
31
.github/workflows/nightly-win-builds.yml
vendored
31
.github/workflows/nightly-win-builds.yml
vendored
@@ -1,31 +0,0 @@
|
||||
name: Windows Paraview Nightly
|
||||
|
||||
on:
|
||||
schedule:
|
||||
- cron: '0 2 * * *' # Run at 2 am
|
||||
|
||||
defaults:
|
||||
run:
|
||||
shell:
|
||||
powershell Invoke-Expression -Command "./share/spack/qa/windows_test_setup.ps1"; {0}
|
||||
|
||||
|
||||
jobs:
|
||||
build-paraview-deps:
|
||||
runs-on: windows-latest
|
||||
steps:
|
||||
- uses: actions/checkout@a5ac7e51b41094c92402da3b24376905380afc29
|
||||
with:
|
||||
fetch-depth: 0
|
||||
- uses: actions/setup-python@82c7e631bb3cdc910f68e0081d67478d79c6982d
|
||||
with:
|
||||
python-version: 3.9
|
||||
- name: Install Python packages
|
||||
run: |
|
||||
python -m pip install --upgrade pip six pywin32 setuptools coverage
|
||||
- name: Build Test
|
||||
run: |
|
||||
spack compiler find
|
||||
spack external find cmake ninja win-sdk win-wdk wgl msmpi
|
||||
spack -d install -y --cdash-upload-url https://cdash.spack.io/submit.php?project=Spack+on+Windows --cdash-track Nightly --only dependencies paraview
|
||||
exit 0
|
4
.github/workflows/setup_git.ps1
vendored
4
.github/workflows/setup_git.ps1
vendored
@@ -1,4 +1,6 @@
|
||||
# (c) 2022 Lawrence Livermore National Laboratory
|
||||
# (c) 2021 Lawrence Livermore National Laboratory
|
||||
|
||||
Set-Location spack
|
||||
|
||||
git config --global user.email "spack@example.com"
|
||||
git config --global user.name "Test User"
|
||||
|
7
.github/workflows/style/requirements.txt
vendored
7
.github/workflows/style/requirements.txt
vendored
@@ -1,7 +0,0 @@
|
||||
black==24.4.2
|
||||
clingo==5.7.1
|
||||
flake8==7.0.0
|
||||
isort==5.13.2
|
||||
mypy==1.8.0
|
||||
types-six==1.16.21.20240513
|
||||
vermin==1.6.0
|
116
.github/workflows/unit_tests.yaml
vendored
116
.github/workflows/unit_tests.yaml
vendored
@@ -11,50 +11,36 @@ concurrency:
|
||||
jobs:
|
||||
# Run unit tests with different configurations on linux
|
||||
ubuntu:
|
||||
runs-on: ${{ matrix.os }}
|
||||
runs-on: ubuntu-latest
|
||||
strategy:
|
||||
matrix:
|
||||
os: [ubuntu-latest]
|
||||
python-version: ['3.7', '3.8', '3.9', '3.10', '3.11', '3.12']
|
||||
python-version: ['2.7', '3.6', '3.7', '3.8', '3.9', '3.10']
|
||||
concretizer: ['clingo']
|
||||
on_develop:
|
||||
- ${{ github.ref == 'refs/heads/develop' }}
|
||||
include:
|
||||
- python-version: '3.11'
|
||||
os: ubuntu-latest
|
||||
- python-version: 2.7
|
||||
concretizer: original
|
||||
on_develop: ${{ github.ref == 'refs/heads/develop' }}
|
||||
- python-version: '3.6'
|
||||
os: ubuntu-20.04
|
||||
concretizer: clingo
|
||||
- python-version: '3.10'
|
||||
concretizer: original
|
||||
on_develop: ${{ github.ref == 'refs/heads/develop' }}
|
||||
exclude:
|
||||
- python-version: '3.7'
|
||||
os: ubuntu-latest
|
||||
concretizer: 'clingo'
|
||||
on_develop: false
|
||||
- python-version: '3.8'
|
||||
os: ubuntu-latest
|
||||
concretizer: 'clingo'
|
||||
on_develop: false
|
||||
- python-version: '3.9'
|
||||
os: ubuntu-latest
|
||||
concretizer: 'clingo'
|
||||
on_develop: false
|
||||
- python-version: '3.10'
|
||||
os: ubuntu-latest
|
||||
concretizer: 'clingo'
|
||||
on_develop: false
|
||||
- python-version: '3.11'
|
||||
os: ubuntu-latest
|
||||
concretizer: 'clingo'
|
||||
on_develop: false
|
||||
|
||||
steps:
|
||||
- uses: actions/checkout@a5ac7e51b41094c92402da3b24376905380afc29
|
||||
- uses: actions/checkout@93ea575cb5d8a053eaa0ac8fa3b40d7e05a33cc8 # @v2
|
||||
with:
|
||||
fetch-depth: 0
|
||||
- uses: actions/setup-python@82c7e631bb3cdc910f68e0081d67478d79c6982d
|
||||
- uses: actions/setup-python@13ae5bb136fac2878aff31522b9efb785519f984 # @v2
|
||||
with:
|
||||
python-version: ${{ matrix.python-version }}
|
||||
- name: Install System packages
|
||||
@@ -63,11 +49,19 @@ jobs:
|
||||
# Needed for unit tests
|
||||
sudo apt-get -y install \
|
||||
coreutils cvs gfortran graphviz gnupg2 mercurial ninja-build \
|
||||
cmake bison libbison-dev kcov
|
||||
patchelf cmake bison libbison-dev kcov
|
||||
- name: Install Python packages
|
||||
run: |
|
||||
pip install --upgrade pip setuptools pytest pytest-xdist pytest-cov
|
||||
pip install --upgrade flake8 "isort>=4.3.5" "mypy>=0.900" "click" "black"
|
||||
pip install --upgrade pip six setuptools pytest codecov[toml] pytest-cov pytest-xdist
|
||||
# ensure style checks are not skipped in unit tests for python >= 3.6
|
||||
# note that true/false (i.e., 1/0) are opposite in conditions in python and bash
|
||||
if python -c 'import sys; sys.exit(not sys.version_info >= (3, 6))'; then
|
||||
pip install --upgrade flake8 "isort>=4.3.5" "mypy>=0.900" "click==8.0.4" "black<=21.12b0"
|
||||
fi
|
||||
- name: Pin pathlib for Python 2.7
|
||||
if: ${{ matrix.python-version == 2.7 }}
|
||||
run: |
|
||||
pip install -U pathlib2==2.3.6
|
||||
- name: Setup git configuration
|
||||
run: |
|
||||
# Need this for the git tests to succeed.
|
||||
@@ -79,8 +73,7 @@ jobs:
|
||||
SPACK_PYTHON: python
|
||||
run: |
|
||||
. share/spack/setup-env.sh
|
||||
spack bootstrap disable spack-install
|
||||
spack bootstrap now
|
||||
spack bootstrap untrust spack-install
|
||||
spack -v solve zlib
|
||||
- name: Run unit tests
|
||||
env:
|
||||
@@ -88,24 +81,24 @@ jobs:
|
||||
SPACK_TEST_SOLVER: ${{ matrix.concretizer }}
|
||||
SPACK_TEST_PARALLEL: 2
|
||||
COVERAGE: true
|
||||
UNIT_TEST_COVERAGE: ${{ matrix.python-version == '3.11' }}
|
||||
UNIT_TEST_COVERAGE: ${{ (matrix.concretizer == 'original' && matrix.python-version == '2.7') || (matrix.python-version == '3.10') }}
|
||||
run: |
|
||||
share/spack/qa/run-unit-tests
|
||||
- uses: codecov/codecov-action@125fc84a9a348dbcf27191600683ec096ec9021c
|
||||
coverage combine -a
|
||||
coverage xml
|
||||
- uses: codecov/codecov-action@d9f34f8cd5cb3b3eb79b3e4b5dae3a16df499a70
|
||||
with:
|
||||
flags: unittests,linux,${{ matrix.concretizer }}
|
||||
token: ${{ secrets.CODECOV_TOKEN }}
|
||||
verbose: true
|
||||
# Test shell integration
|
||||
shell:
|
||||
runs-on: ubuntu-latest
|
||||
steps:
|
||||
- uses: actions/checkout@a5ac7e51b41094c92402da3b24376905380afc29
|
||||
- uses: actions/checkout@93ea575cb5d8a053eaa0ac8fa3b40d7e05a33cc8 # @v2
|
||||
with:
|
||||
fetch-depth: 0
|
||||
- uses: actions/setup-python@82c7e631bb3cdc910f68e0081d67478d79c6982d
|
||||
- uses: actions/setup-python@13ae5bb136fac2878aff31522b9efb785519f984 # @v2
|
||||
with:
|
||||
python-version: '3.11'
|
||||
python-version: '3.10'
|
||||
- name: Install System packages
|
||||
run: |
|
||||
sudo apt-get -y update
|
||||
@@ -113,7 +106,7 @@ jobs:
|
||||
sudo apt-get install -y coreutils kcov csh zsh tcsh fish dash bash
|
||||
- name: Install Python packages
|
||||
run: |
|
||||
pip install --upgrade pip setuptools pytest coverage[toml] pytest-xdist
|
||||
pip install --upgrade pip six setuptools pytest codecov coverage[toml]==6.2 pytest-xdist
|
||||
- name: Setup git configuration
|
||||
run: |
|
||||
# Need this for the git tests to succeed.
|
||||
@@ -124,11 +117,9 @@ jobs:
|
||||
COVERAGE: true
|
||||
run: |
|
||||
share/spack/qa/run-shell-tests
|
||||
- uses: codecov/codecov-action@125fc84a9a348dbcf27191600683ec096ec9021c
|
||||
- uses: codecov/codecov-action@d9f34f8cd5cb3b3eb79b3e4b5dae3a16df499a70
|
||||
with:
|
||||
flags: shelltests,linux
|
||||
token: ${{ secrets.CODECOV_TOKEN }}
|
||||
verbose: true
|
||||
|
||||
# Test RHEL8 UBI with platform Python. This job is run
|
||||
# only on PRs modifying core Spack
|
||||
@@ -141,11 +132,10 @@ jobs:
|
||||
dnf install -y \
|
||||
bzip2 curl file gcc-c++ gcc gcc-gfortran git gnupg2 gzip \
|
||||
make patch tcl unzip which xz
|
||||
- uses: actions/checkout@a5ac7e51b41094c92402da3b24376905380afc29
|
||||
- uses: actions/checkout@93ea575cb5d8a053eaa0ac8fa3b40d7e05a33cc8 # @v2
|
||||
- name: Setup repo and non-root user
|
||||
run: |
|
||||
git --version
|
||||
git config --global --add safe.directory /__w/spack/spack
|
||||
git fetch --unshallow
|
||||
. .github/workflows/setup_git.sh
|
||||
useradd spack-test
|
||||
@@ -154,26 +144,28 @@ jobs:
|
||||
shell: runuser -u spack-test -- bash {0}
|
||||
run: |
|
||||
source share/spack/setup-env.sh
|
||||
spack -d bootstrap now --dev
|
||||
spack -d solve zlib
|
||||
spack unit-test -k 'not cvs and not svn and not hg' -x --verbose
|
||||
# Test for the clingo based solver (using clingo-cffi)
|
||||
clingo-cffi:
|
||||
runs-on: ubuntu-latest
|
||||
steps:
|
||||
- uses: actions/checkout@a5ac7e51b41094c92402da3b24376905380afc29
|
||||
- uses: actions/checkout@93ea575cb5d8a053eaa0ac8fa3b40d7e05a33cc8 # @v2
|
||||
with:
|
||||
fetch-depth: 0
|
||||
- uses: actions/setup-python@82c7e631bb3cdc910f68e0081d67478d79c6982d
|
||||
- uses: actions/setup-python@13ae5bb136fac2878aff31522b9efb785519f984 # @v2
|
||||
with:
|
||||
python-version: '3.11'
|
||||
python-version: '3.10'
|
||||
- name: Install System packages
|
||||
run: |
|
||||
sudo apt-get -y update
|
||||
sudo apt-get -y install coreutils cvs gfortran graphviz gnupg2 mercurial ninja-build kcov
|
||||
# Needed for unit tests
|
||||
sudo apt-get -y install \
|
||||
coreutils cvs gfortran graphviz gnupg2 mercurial ninja-build \
|
||||
patchelf kcov
|
||||
- name: Install Python packages
|
||||
run: |
|
||||
pip install --upgrade pip setuptools pytest coverage[toml] pytest-cov clingo pytest-xdist
|
||||
pip install --upgrade flake8 "isort>=4.3.5" "mypy>=0.900" "click" "black"
|
||||
pip install --upgrade pip six setuptools pytest codecov coverage[toml] pytest-cov clingo pytest-xdist
|
||||
- name: Setup git configuration
|
||||
run: |
|
||||
# Need this for the git tests to succeed.
|
||||
@@ -185,29 +177,28 @@ jobs:
|
||||
SPACK_TEST_SOLVER: clingo
|
||||
run: |
|
||||
share/spack/qa/run-unit-tests
|
||||
- uses: codecov/codecov-action@125fc84a9a348dbcf27191600683ec096ec9021c
|
||||
coverage combine -a
|
||||
coverage xml
|
||||
- uses: codecov/codecov-action@d9f34f8cd5cb3b3eb79b3e4b5dae3a16df499a70 # @v2.1.0
|
||||
with:
|
||||
flags: unittests,linux,clingo
|
||||
token: ${{ secrets.CODECOV_TOKEN }}
|
||||
verbose: true
|
||||
# Run unit tests on MacOS
|
||||
macos:
|
||||
runs-on: ${{ matrix.os }}
|
||||
runs-on: macos-latest
|
||||
strategy:
|
||||
matrix:
|
||||
os: [macos-13, macos-14]
|
||||
python-version: ["3.11"]
|
||||
python-version: [3.8]
|
||||
steps:
|
||||
- uses: actions/checkout@a5ac7e51b41094c92402da3b24376905380afc29
|
||||
- uses: actions/checkout@93ea575cb5d8a053eaa0ac8fa3b40d7e05a33cc8 # @v2
|
||||
with:
|
||||
fetch-depth: 0
|
||||
- uses: actions/setup-python@82c7e631bb3cdc910f68e0081d67478d79c6982d
|
||||
- uses: actions/setup-python@13ae5bb136fac2878aff31522b9efb785519f984 # @v2
|
||||
with:
|
||||
python-version: ${{ matrix.python-version }}
|
||||
- name: Install Python packages
|
||||
run: |
|
||||
pip install --upgrade pip setuptools
|
||||
pip install --upgrade pytest coverage[toml] pytest-xdist pytest-cov
|
||||
pip install --upgrade pip six setuptools
|
||||
pip install --upgrade pytest codecov coverage[toml] pytest-xdist pytest-cov
|
||||
- name: Setup Homebrew packages
|
||||
run: |
|
||||
brew install dash fish gcc gnupg2 kcov
|
||||
@@ -219,12 +210,15 @@ jobs:
|
||||
git --version
|
||||
. .github/workflows/setup_git.sh
|
||||
. share/spack/setup-env.sh
|
||||
$(which spack) bootstrap disable spack-install
|
||||
$(which spack) bootstrap untrust spack-install
|
||||
$(which spack) solve zlib
|
||||
common_args=(--dist loadfile --tx '4*popen//python=./bin/spack-tmpconfig python -u ./bin/spack python' -x)
|
||||
$(which spack) unit-test --verbose --cov --cov-config=pyproject.toml --cov-report=xml:coverage.xml "${common_args[@]}"
|
||||
- uses: codecov/codecov-action@125fc84a9a348dbcf27191600683ec096ec9021c
|
||||
$(which spack) unit-test --cov --cov-config=pyproject.toml "${common_args[@]}"
|
||||
coverage combine -a
|
||||
coverage xml
|
||||
# Delete the symlink going from ./lib/spack/docs/_spack_root back to
|
||||
# the initial directory, since it causes ELOOP errors with codecov/actions@2
|
||||
rm lib/spack/docs/_spack_root
|
||||
- uses: codecov/codecov-action@d9f34f8cd5cb3b3eb79b3e4b5dae3a16df499a70
|
||||
with:
|
||||
flags: unittests,macos
|
||||
token: ${{ secrets.CODECOV_TOKEN }}
|
||||
verbose: true
|
||||
|
53
.github/workflows/valid-style.yml
vendored
53
.github/workflows/valid-style.yml
vendored
@@ -18,34 +18,33 @@ jobs:
|
||||
validate:
|
||||
runs-on: ubuntu-latest
|
||||
steps:
|
||||
- uses: actions/checkout@a5ac7e51b41094c92402da3b24376905380afc29
|
||||
- uses: actions/setup-python@82c7e631bb3cdc910f68e0081d67478d79c6982d
|
||||
- uses: actions/checkout@93ea575cb5d8a053eaa0ac8fa3b40d7e05a33cc8 # @v2
|
||||
- uses: actions/setup-python@13ae5bb136fac2878aff31522b9efb785519f984 # @v2
|
||||
with:
|
||||
python-version: '3.11'
|
||||
python-version: '3.10'
|
||||
cache: 'pip'
|
||||
- name: Install Python Packages
|
||||
run: |
|
||||
pip install --upgrade pip setuptools
|
||||
pip install -r .github/workflows/style/requirements.txt
|
||||
pip install --upgrade pip
|
||||
pip install --upgrade vermin
|
||||
- name: vermin (Spack's Core)
|
||||
run: vermin --backport importlib --backport argparse --violations --backport typing -t=3.6- -vvv lib/spack/spack/ lib/spack/llnl/ bin/
|
||||
run: vermin --backport argparse --violations --backport typing -t=2.7- -t=3.6- -vvv lib/spack/spack/ lib/spack/llnl/ bin/
|
||||
- name: vermin (Repositories)
|
||||
run: vermin --backport importlib --backport argparse --violations --backport typing -t=3.6- -vvv var/spack/repos
|
||||
run: vermin --backport argparse --violations --backport typing -t=2.7- -t=3.6- -vvv var/spack/repos
|
||||
# Run style checks on the files that have been changed
|
||||
style:
|
||||
runs-on: ubuntu-latest
|
||||
steps:
|
||||
- uses: actions/checkout@a5ac7e51b41094c92402da3b24376905380afc29
|
||||
- uses: actions/checkout@93ea575cb5d8a053eaa0ac8fa3b40d7e05a33cc8 # @v2
|
||||
with:
|
||||
fetch-depth: 0
|
||||
- uses: actions/setup-python@82c7e631bb3cdc910f68e0081d67478d79c6982d
|
||||
- uses: actions/setup-python@13ae5bb136fac2878aff31522b9efb785519f984 # @v2
|
||||
with:
|
||||
python-version: '3.11'
|
||||
python-version: '3.10'
|
||||
cache: 'pip'
|
||||
- name: Install Python packages
|
||||
run: |
|
||||
pip install --upgrade pip setuptools
|
||||
pip install -r .github/workflows/style/requirements.txt
|
||||
python3 -m pip install --upgrade pip six setuptools types-six click==8.0.2 'black==21.12b0' mypy isort clingo flake8
|
||||
- name: Setup git configuration
|
||||
run: |
|
||||
# Need this for the git tests to succeed.
|
||||
@@ -56,34 +55,6 @@ jobs:
|
||||
share/spack/qa/run-style-tests
|
||||
audit:
|
||||
uses: ./.github/workflows/audit.yaml
|
||||
secrets: inherit
|
||||
with:
|
||||
with_coverage: ${{ inputs.with_coverage }}
|
||||
python_version: '3.11'
|
||||
# Check that spack can bootstrap the development environment on Python 3.6 - RHEL8
|
||||
bootstrap-dev-rhel8:
|
||||
runs-on: ubuntu-latest
|
||||
container: registry.access.redhat.com/ubi8/ubi
|
||||
steps:
|
||||
- name: Install dependencies
|
||||
run: |
|
||||
dnf install -y \
|
||||
bzip2 curl file gcc-c++ gcc gcc-gfortran git gnupg2 gzip \
|
||||
make patch tcl unzip which xz
|
||||
- uses: actions/checkout@a5ac7e51b41094c92402da3b24376905380afc29
|
||||
- name: Setup repo and non-root user
|
||||
run: |
|
||||
git --version
|
||||
git config --global --add safe.directory /__w/spack/spack
|
||||
git fetch --unshallow
|
||||
. .github/workflows/setup_git.sh
|
||||
useradd spack-test
|
||||
chown -R spack-test .
|
||||
- name: Bootstrap Spack development environment
|
||||
shell: runuser -u spack-test -- bash {0}
|
||||
run: |
|
||||
source share/spack/setup-env.sh
|
||||
spack debug report
|
||||
spack -d bootstrap now --dev
|
||||
spack style -t black
|
||||
spack unit-test -V
|
||||
python_version: '3.10'
|
||||
|
125
.github/workflows/windows_python.yml
vendored
125
.github/workflows/windows_python.yml
vendored
@@ -10,74 +10,151 @@ concurrency:
|
||||
defaults:
|
||||
run:
|
||||
shell:
|
||||
powershell Invoke-Expression -Command "./share/spack/qa/windows_test_setup.ps1"; {0}
|
||||
powershell Invoke-Expression -Command ".\share\spack\qa\windows_test_setup.ps1"; {0}
|
||||
jobs:
|
||||
unit-tests:
|
||||
runs-on: windows-latest
|
||||
steps:
|
||||
- uses: actions/checkout@a5ac7e51b41094c92402da3b24376905380afc29
|
||||
- uses: actions/checkout@93ea575cb5d8a053eaa0ac8fa3b40d7e05a33cc8
|
||||
with:
|
||||
fetch-depth: 0
|
||||
- uses: actions/setup-python@82c7e631bb3cdc910f68e0081d67478d79c6982d
|
||||
- uses: actions/setup-python@13ae5bb136fac2878aff31522b9efb785519f984
|
||||
with:
|
||||
python-version: 3.9
|
||||
- name: Install Python packages
|
||||
run: |
|
||||
python -m pip install --upgrade pip pywin32 setuptools pytest-cov clingo
|
||||
python -m pip install --upgrade pip six pywin32 setuptools codecov pytest-cov
|
||||
- name: Create local develop
|
||||
run: |
|
||||
./.github/workflows/setup_git.ps1
|
||||
.\spack\.github\workflows\setup_git.ps1
|
||||
- name: Unit Test
|
||||
run: |
|
||||
spack unit-test -x --verbose --cov --cov-config=pyproject.toml --ignore=lib/spack/spack/test/cmd
|
||||
./share/spack/qa/validate_last_exit.ps1
|
||||
echo F|xcopy .\spack\share\spack\qa\configuration\windows_config.yaml $env:USERPROFILE\.spack\windows\config.yaml
|
||||
cd spack
|
||||
dir
|
||||
(Get-Item '.\lib\spack\docs\_spack_root').Delete()
|
||||
spack unit-test --verbose --cov --cov-config=pyproject.toml --ignore=lib/spack/spack/test/cmd
|
||||
coverage combine -a
|
||||
coverage xml
|
||||
- uses: codecov/codecov-action@125fc84a9a348dbcf27191600683ec096ec9021c
|
||||
- uses: codecov/codecov-action@d9f34f8cd5cb3b3eb79b3e4b5dae3a16df499a70
|
||||
with:
|
||||
flags: unittests,windows
|
||||
token: ${{ secrets.CODECOV_TOKEN }}
|
||||
verbose: true
|
||||
unit-tests-cmd:
|
||||
runs-on: windows-latest
|
||||
steps:
|
||||
- uses: actions/checkout@a5ac7e51b41094c92402da3b24376905380afc29
|
||||
- uses: actions/checkout@93ea575cb5d8a053eaa0ac8fa3b40d7e05a33cc8
|
||||
with:
|
||||
fetch-depth: 0
|
||||
- uses: actions/setup-python@82c7e631bb3cdc910f68e0081d67478d79c6982d
|
||||
- uses: actions/setup-python@13ae5bb136fac2878aff31522b9efb785519f984
|
||||
with:
|
||||
python-version: 3.9
|
||||
- name: Install Python packages
|
||||
run: |
|
||||
python -m pip install --upgrade pip pywin32 setuptools coverage pytest-cov clingo
|
||||
python -m pip install --upgrade pip six pywin32 setuptools codecov coverage pytest-cov
|
||||
- name: Create local develop
|
||||
run: |
|
||||
./.github/workflows/setup_git.ps1
|
||||
.\spack\.github\workflows\setup_git.ps1
|
||||
- name: Command Unit Test
|
||||
run: |
|
||||
spack unit-test -x --verbose --cov --cov-config=pyproject.toml lib/spack/spack/test/cmd
|
||||
./share/spack/qa/validate_last_exit.ps1
|
||||
echo F|xcopy .\spack\share\spack\qa\configuration\windows_config.yaml $env:USERPROFILE\.spack\windows\config.yaml
|
||||
cd spack
|
||||
(Get-Item '.\lib\spack\docs\_spack_root').Delete()
|
||||
spack unit-test --verbose --cov --cov-config=pyproject.toml lib/spack/spack/test/cmd
|
||||
coverage combine -a
|
||||
coverage xml
|
||||
- uses: codecov/codecov-action@125fc84a9a348dbcf27191600683ec096ec9021c
|
||||
- uses: codecov/codecov-action@d9f34f8cd5cb3b3eb79b3e4b5dae3a16df499a70
|
||||
with:
|
||||
flags: unittests,windows
|
||||
token: ${{ secrets.CODECOV_TOKEN }}
|
||||
verbose: true
|
||||
build-abseil:
|
||||
runs-on: windows-latest
|
||||
steps:
|
||||
- uses: actions/checkout@a5ac7e51b41094c92402da3b24376905380afc29
|
||||
- uses: actions/checkout@93ea575cb5d8a053eaa0ac8fa3b40d7e05a33cc8
|
||||
with:
|
||||
fetch-depth: 0
|
||||
- uses: actions/setup-python@82c7e631bb3cdc910f68e0081d67478d79c6982d
|
||||
- uses: actions/setup-python@13ae5bb136fac2878aff31522b9efb785519f984
|
||||
with:
|
||||
python-version: 3.9
|
||||
- name: Install Python packages
|
||||
run: |
|
||||
python -m pip install --upgrade pip pywin32 setuptools coverage
|
||||
python -m pip install --upgrade pip six pywin32 setuptools codecov coverage
|
||||
- name: Build Test
|
||||
run: |
|
||||
spack compiler find
|
||||
spack -d external find cmake ninja
|
||||
spack -d install abseil-cpp
|
||||
echo F|xcopy .\spack\share\spack\qa\configuration\windows_config.yaml $env:USERPROFILE\.spack\windows\config.yaml
|
||||
spack external find cmake
|
||||
spack external find ninja
|
||||
spack install abseil-cpp
|
||||
make-installer:
|
||||
runs-on: windows-latest
|
||||
steps:
|
||||
- name: Disable Windows Symlinks
|
||||
run: |
|
||||
git config --global core.symlinks false
|
||||
shell:
|
||||
powershell
|
||||
- uses: actions/checkout@93ea575cb5d8a053eaa0ac8fa3b40d7e05a33cc8
|
||||
with:
|
||||
fetch-depth: 0
|
||||
- uses: actions/setup-python@13ae5bb136fac2878aff31522b9efb785519f984
|
||||
with:
|
||||
python-version: 3.9
|
||||
- name: Install Python packages
|
||||
run: |
|
||||
python -m pip install --upgrade pip six pywin32 setuptools
|
||||
- name: Add Light and Candle to Path
|
||||
run: |
|
||||
$env:WIX >> $GITHUB_PATH
|
||||
- name: Run Installer
|
||||
run: |
|
||||
.\spack\share\spack\qa\setup_spack.ps1
|
||||
spack make-installer -s spack -g SILENT pkg
|
||||
echo "installer_root=$((pwd).Path)" | Out-File -FilePath $Env:GITHUB_ENV -Encoding utf8 -Append
|
||||
env:
|
||||
ProgressPreference: SilentlyContinue
|
||||
- uses: actions/upload-artifact@3cea5372237819ed00197afe530f5a7ea3e805c8
|
||||
with:
|
||||
name: Windows Spack Installer Bundle
|
||||
path: ${{ env.installer_root }}\pkg\Spack.exe
|
||||
- uses: actions/upload-artifact@3cea5372237819ed00197afe530f5a7ea3e805c8
|
||||
with:
|
||||
name: Windows Spack Installer
|
||||
path: ${{ env.installer_root}}\pkg\Spack.msi
|
||||
execute-installer:
|
||||
needs: make-installer
|
||||
runs-on: windows-latest
|
||||
defaults:
|
||||
run:
|
||||
shell: pwsh
|
||||
steps:
|
||||
- uses: actions/setup-python@13ae5bb136fac2878aff31522b9efb785519f984
|
||||
with:
|
||||
python-version: 3.9
|
||||
- name: Install Python packages
|
||||
run: |
|
||||
python -m pip install --upgrade pip six pywin32 setuptools
|
||||
- name: Setup installer directory
|
||||
run: |
|
||||
mkdir -p spack_installer
|
||||
echo "spack_installer=$((pwd).Path)\spack_installer" | Out-File -FilePath $Env:GITHUB_ENV -Encoding utf8 -Append
|
||||
- uses: actions/download-artifact@v3
|
||||
with:
|
||||
name: Windows Spack Installer Bundle
|
||||
path: ${{ env.spack_installer }}
|
||||
- name: Execute Bundled Installer
|
||||
run: |
|
||||
$proc = Start-Process ${{ env.spack_installer }}\spack.exe "/install /quiet" -Passthru
|
||||
$handle = $proc.Handle # cache proc.Handle
|
||||
$proc.WaitForExit();
|
||||
$LASTEXITCODE
|
||||
env:
|
||||
ProgressPreference: SilentlyContinue
|
||||
- uses: actions/download-artifact@v3
|
||||
with:
|
||||
name: Windows Spack Installer
|
||||
path: ${{ env.spack_installer }}
|
||||
- name: Execute MSI
|
||||
run: |
|
||||
$proc = Start-Process ${{ env.spack_installer }}\spack.msi "/quiet" -Passthru
|
||||
$handle = $proc.Handle # cache proc.Handle
|
||||
$proc.WaitForExit();
|
||||
$LASTEXITCODE
|
||||
|
@@ -1,16 +1,10 @@
|
||||
version: 2
|
||||
|
||||
build:
|
||||
os: "ubuntu-22.04"
|
||||
apt_packages:
|
||||
- graphviz
|
||||
tools:
|
||||
python: "3.11"
|
||||
|
||||
sphinx:
|
||||
configuration: lib/spack/docs/conf.py
|
||||
fail_on_warning: true
|
||||
|
||||
python:
|
||||
version: 3.7
|
||||
install:
|
||||
- requirements: lib/spack/docs/requirements.txt
|
||||
|
897
CHANGELOG.md
897
CHANGELOG.md
@@ -1,907 +1,16 @@
|
||||
# v0.21.2 (2024-03-01)
|
||||
|
||||
## Bugfixes
|
||||
|
||||
- Containerize: accommodate nested or pre-existing spack-env paths (#41558)
|
||||
- Fix setup-env script, when going back and forth between instances (#40924)
|
||||
- Fix using fully-qualified namespaces from root specs (#41957)
|
||||
- Fix a bug when a required provider is requested for multiple virtuals (#42088)
|
||||
- OCI buildcaches:
|
||||
- only push in parallel when forking (#42143)
|
||||
- use pickleable errors (#42160)
|
||||
- Fix using sticky variants in externals (#42253)
|
||||
- Fix a rare issue with conditional requirements and multi-valued variants (#42566)
|
||||
|
||||
## Package updates
|
||||
- rust: add v1.75, rework a few variants (#41161,#41903)
|
||||
- py-transformers: add v4.35.2 (#41266)
|
||||
- mgard: fix OpenMP on AppleClang (#42933)
|
||||
|
||||
# v0.21.1 (2024-01-11)
|
||||
|
||||
## New features
|
||||
- Add support for reading buildcaches created by Spack v0.22 (#41773)
|
||||
|
||||
## Bugfixes
|
||||
|
||||
- spack graph: fix coloring with environments (#41240)
|
||||
- spack info: sort variants in --variants-by-name (#41389)
|
||||
- Spec.format: error on old style format strings (#41934)
|
||||
- ASP-based solver:
|
||||
- fix infinite recursion when computing concretization errors (#41061)
|
||||
- don't error for type mismatch on preferences (#41138)
|
||||
- don't emit spurious debug output (#41218)
|
||||
- Improve the error message for deprecated preferences (#41075)
|
||||
- Fix MSVC preview version breaking clingo build on Windows (#41185)
|
||||
- Fix multi-word aliases (#41126)
|
||||
- Add a warning for unconfigured compiler (#41213)
|
||||
- environment: fix an issue with deconcretization/reconcretization of specs (#41294)
|
||||
- buildcache: don't error if a patch is missing, when installing from binaries (#41986)
|
||||
- Multiple improvements to unit-tests (#41215,#41369,#41495,#41359,#41361,#41345,#41342,#41308,#41226)
|
||||
|
||||
## Package updates
|
||||
- root: add a webgui patch to address security issue (#41404)
|
||||
- BerkeleyGW: update source urls (#38218)
|
||||
|
||||
# v0.21.0 (2023-11-11)
|
||||
|
||||
`v0.21.0` is a major feature release.
|
||||
|
||||
## Features in this release
|
||||
|
||||
1. **Better error messages with condition chaining**
|
||||
|
||||
In v0.18, we added better error messages that could tell you what problem happened,
|
||||
but they couldn't tell you *why* it happened. `0.21` adds *condition chaining* to the
|
||||
solver, and Spack can now trace back through the conditions that led to an error and
|
||||
build a tree of causes potential causes and where they came from. For example:
|
||||
|
||||
```console
|
||||
$ spack solve hdf5 ^cmake@3.0.1
|
||||
==> Error: concretization failed for the following reasons:
|
||||
|
||||
1. Cannot satisfy 'cmake@3.0.1'
|
||||
2. Cannot satisfy 'cmake@3.0.1'
|
||||
required because hdf5 ^cmake@3.0.1 requested from CLI
|
||||
3. Cannot satisfy 'cmake@3.18:' and 'cmake@3.0.1
|
||||
required because hdf5 ^cmake@3.0.1 requested from CLI
|
||||
required because hdf5 depends on cmake@3.18: when @1.13:
|
||||
required because hdf5 ^cmake@3.0.1 requested from CLI
|
||||
4. Cannot satisfy 'cmake@3.12:' and 'cmake@3.0.1
|
||||
required because hdf5 depends on cmake@3.12:
|
||||
required because hdf5 ^cmake@3.0.1 requested from CLI
|
||||
required because hdf5 ^cmake@3.0.1 requested from CLI
|
||||
```
|
||||
|
||||
More details in #40173.
|
||||
|
||||
2. **OCI build caches**
|
||||
|
||||
You can now use an arbitrary [OCI](https://opencontainers.org) registry as a build
|
||||
cache:
|
||||
|
||||
```console
|
||||
$ spack mirror add my_registry oci://user/image # Dockerhub
|
||||
$ spack mirror add my_registry oci://ghcr.io/haampie/spack-test # GHCR
|
||||
$ spack mirror set --push --oci-username ... --oci-password ... my_registry # set login creds
|
||||
$ spack buildcache push my_registry [specs...]
|
||||
```
|
||||
|
||||
And you can optionally add a base image to get *runnable* images:
|
||||
|
||||
```console
|
||||
$ spack buildcache push --base-image ubuntu:23.04 my_registry python
|
||||
Pushed ... as [image]:python-3.11.2-65txfcpqbmpawclvtasuog4yzmxwaoia.spack
|
||||
|
||||
$ docker run --rm -it [image]:python-3.11.2-65txfcpqbmpawclvtasuog4yzmxwaoia.spack
|
||||
```
|
||||
|
||||
This creates a container image from the Spack installations on the host system,
|
||||
without the need to run `spack install` from a `Dockerfile` or `sif` file. It also
|
||||
addresses the inconvenience of losing binaries of dependencies when `RUN spack
|
||||
install` fails inside `docker build`.
|
||||
|
||||
Further, the container image layers and build cache tarballs are the same files. This
|
||||
means that `spack install` and `docker pull` use the exact same underlying binaries.
|
||||
If you previously used `spack install` inside of `docker build`, this feature helps
|
||||
you save storage by a factor two.
|
||||
|
||||
More details in #38358.
|
||||
|
||||
3. **Multiple versions of build dependencies**
|
||||
|
||||
Increasingly, complex package builds require multiple versions of some build
|
||||
dependencies. For example, Python packages frequently require very specific versions
|
||||
of `setuptools`, `cython`, and sometimes different physics packages require different
|
||||
versions of Python to build. The concretizer enforced that every solve was *unified*,
|
||||
i.e., that there only be one version of every package. The concretizer now supports
|
||||
"duplicate" nodes for *build dependencies*, but enforces unification through
|
||||
transitive link and run dependencies. This will allow it to better resolve complex
|
||||
dependency graphs in ecosystems like Python, and it also gets us very close to
|
||||
modeling compilers as proper dependencies.
|
||||
|
||||
This change required a major overhaul of the concretizer, as well as a number of
|
||||
performance optimizations. See #38447, #39621.
|
||||
|
||||
4. **Cherry-picking virtual dependencies**
|
||||
|
||||
You can now select only a subset of virtual dependencies from a spec that may provide
|
||||
more. For example, if you want `mpich` to be your `mpi` provider, you can be explicit
|
||||
by writing:
|
||||
|
||||
```
|
||||
hdf5 ^[virtuals=mpi] mpich
|
||||
```
|
||||
|
||||
Or, if you want to use, e.g., `intel-parallel-studio` for `blas` along with an external
|
||||
`lapack` like `openblas`, you could write:
|
||||
|
||||
```
|
||||
strumpack ^[virtuals=mpi] intel-parallel-studio+mkl ^[virtuals=lapack] openblas
|
||||
```
|
||||
|
||||
The `virtuals=mpi` is an edge attribute, and dependency edges in Spack graphs now
|
||||
track which virtuals they satisfied. More details in #17229 and #35322.
|
||||
|
||||
Note for packaging: in Spack 0.21 `spec.satisfies("^virtual")` is true if and only if
|
||||
the package specifies `depends_on("virtual")`. This is different from Spack 0.20,
|
||||
where depending on a provider implied depending on the virtual provided. See #41002
|
||||
for an example where `^mkl` was being used to test for several `mkl` providers in a
|
||||
package that did not depend on `mkl`.
|
||||
|
||||
5. **License directive**
|
||||
|
||||
Spack packages can now have license metadata, with the new `license()` directive:
|
||||
|
||||
```python
|
||||
license("Apache-2.0")
|
||||
```
|
||||
|
||||
Licenses use [SPDX identifiers](https://spdx.org/licenses), and you can use SPDX
|
||||
expressions to combine them:
|
||||
|
||||
```python
|
||||
license("Apache-2.0 OR MIT")
|
||||
```
|
||||
|
||||
Like other directives in Spack, it's conditional, so you can handle complex cases like
|
||||
Spack itself:
|
||||
|
||||
```python
|
||||
license("LGPL-2.1", when="@:0.11")
|
||||
license("Apache-2.0 OR MIT", when="@0.12:")
|
||||
```
|
||||
|
||||
More details in #39346, #40598.
|
||||
|
||||
6. **`spack deconcretize` command**
|
||||
|
||||
We are getting close to having a `spack update` command for environments, but we're
|
||||
not quite there yet. This is the next best thing. `spack deconcretize` gives you
|
||||
control over what you want to update in an already concrete environment. If you have
|
||||
an environment built with, say, `meson`, and you want to update your `meson` version,
|
||||
you can run:
|
||||
|
||||
```console
|
||||
spack deconcretize meson
|
||||
```
|
||||
|
||||
and have everything that depends on `meson` rebuilt the next time you run `spack
|
||||
concretize`. In a future Spack version, we'll handle all of this in a single command,
|
||||
but for now you can use this to drop bits of your lockfile and resolve your
|
||||
dependencies again. More in #38803.
|
||||
|
||||
7. **UI Improvements**
|
||||
|
||||
The venerable `spack info` command was looking shabby compared to the rest of Spack's
|
||||
UI, so we reworked it to have a bit more flair. `spack info` now makes much better
|
||||
use of terminal space and shows variants, their values, and their descriptions much
|
||||
more clearly. Conditional variants are grouped separately so you can more easily
|
||||
understand how packages are structured. More in #40998.
|
||||
|
||||
`spack checksum` now allows you to filter versions from your editor, or by version
|
||||
range. It also notifies you about potential download URL changes. See #40403.
|
||||
|
||||
8. **Environments can include definitions**
|
||||
|
||||
Spack did not previously support using `include:` with The
|
||||
[definitions](https://spack.readthedocs.io/en/latest/environments.html#spec-list-references)
|
||||
section of an environment, but now it does. You can use this to curate lists of specs
|
||||
and more easily reuse them across environments. See #33960.
|
||||
|
||||
9. **Aliases**
|
||||
|
||||
You can now add aliases to Spack commands in `config.yaml`, e.g. this might enshrine
|
||||
your favorite args to `spack find` as `spack f`:
|
||||
|
||||
```yaml
|
||||
config:
|
||||
aliases:
|
||||
f: find -lv
|
||||
```
|
||||
|
||||
See #17229.
|
||||
|
||||
10. **Improved autoloading of modules**
|
||||
|
||||
Spack 0.20 was the first release to enable autoloading of direct dependencies in
|
||||
module files.
|
||||
|
||||
The downside of this was that `module avail` and `module load` tab completion would
|
||||
show users too many modules to choose from, and many users disabled generating
|
||||
modules for dependencies through `exclude_implicits: true`. Further, it was
|
||||
necessary to keep hashes in module names to avoid file name clashes.
|
||||
|
||||
In this release, you can start using `hide_implicits: true` instead, which exposes
|
||||
only explicitly installed packages to the user, while still autoloading
|
||||
dependencies. On top of that, you can safely use `hash_length: 0`, as this config
|
||||
now only applies to the modules exposed to the user -- you don't have to worry about
|
||||
file name clashes for hidden dependencies.
|
||||
|
||||
Note: for `tcl` this feature requires Modules 4.7 or higher
|
||||
|
||||
11. **Updated container labeling**
|
||||
|
||||
Nightly Docker images from the `develop` branch will now be tagged as `:develop` and
|
||||
`:nightly`. The `:latest` tag is no longer associated with `:develop`, but with the
|
||||
latest stable release. Releases will be tagged with `:{major}`, `:{major}.{minor}`
|
||||
and `:{major}.{minor}.{patch}`. `ubuntu:18.04` has also been removed from the list of
|
||||
generated Docker images, as it is no longer supported. See #40593.
|
||||
|
||||
## Other new commands and directives
|
||||
|
||||
* `spack env activate` without arguments now loads a `default` environment that you do
|
||||
not have to create (#40756).
|
||||
* `spack find -H` / `--hashes`: a new shortcut for piping `spack find` output to
|
||||
other commands (#38663)
|
||||
* Add `spack checksum --verify`, fix `--add` (#38458)
|
||||
* New `default_args` context manager factors out common args for directives (#39964)
|
||||
* `spack compiler find --[no]-mixed-toolchain` lets you easily mix `clang` and
|
||||
`gfortran` on Linux (#40902)
|
||||
|
||||
## Performance improvements
|
||||
|
||||
* `spack external find` execution is now much faster (#39843)
|
||||
* `spack location -i` now much faster on success (#40898)
|
||||
* Drop redundant rpaths post install (#38976)
|
||||
* ASP-based solver: avoid cycles in clingo using hidden directive (#40720)
|
||||
* Fix multiple quadratic complexity issues in environments (#38771)
|
||||
|
||||
## Other new features of note
|
||||
|
||||
* archspec: update to v0.2.2, support for Sapphire Rapids, Power10, Neoverse V2 (#40917)
|
||||
* Propagate variants across nodes that don't have that variant (#38512)
|
||||
* Implement fish completion (#29549)
|
||||
* Can now distinguish between source/binary mirror; don't ping mirror.spack.io as much (#34523)
|
||||
* Improve status reporting on install (add [n/total] display) (#37903)
|
||||
|
||||
## Windows
|
||||
|
||||
This release has the best Windows support of any Spack release yet, with numerous
|
||||
improvements and much larger swaths of tests passing:
|
||||
|
||||
* MSVC and SDK improvements (#37711, #37930, #38500, #39823, #39180)
|
||||
* Windows external finding: update default paths; treat .bat as executable on Windows (#39850)
|
||||
* Windows decompression: fix removal of intermediate file (#38958)
|
||||
* Windows: executable/path handling (#37762)
|
||||
* Windows build systems: use ninja and enable tests (#33589)
|
||||
* Windows testing (#36970, #36972, #36973, #36840, #36977, #36792, #36834, #34696, #36971)
|
||||
* Windows PowerShell support (#39118, #37951)
|
||||
* Windows symlinking and libraries (#39933, #38599, #34701, #38578, #34701)
|
||||
|
||||
## Notable refactors
|
||||
* User-specified flags take precedence over others in Spack compiler wrappers (#37376)
|
||||
* Improve setup of build, run, and test environments (#35737, #40916)
|
||||
* `make` is no longer a required system dependency of Spack (#40380)
|
||||
* Support Python 3.12 (#40404, #40155, #40153)
|
||||
* docs: Replace package list with packages.spack.io (#40251)
|
||||
* Drop Python 2 constructs in Spack (#38720, #38718, #38703)
|
||||
|
||||
## Binary cache and stack updates
|
||||
* e4s arm stack: duplicate and target neoverse v1 (#40369)
|
||||
* Add macOS ML CI stacks (#36586)
|
||||
* E4S Cray CI Stack (#37837)
|
||||
* e4s cray: expand spec list (#38947)
|
||||
* e4s cray sles ci: expand spec list (#39081)
|
||||
|
||||
## Removals, deprecations, and syntax changes
|
||||
* ASP: targets, compilers and providers soft-preferences are only global (#31261)
|
||||
* Parser: fix ambiguity with whitespace in version ranges (#40344)
|
||||
* Module file generation is disabled by default; you'll need to enable it to use it (#37258)
|
||||
* Remove deprecated "extra_instructions" option for containers (#40365)
|
||||
* Stand-alone test feature deprecation postponed to v0.22 (#40600)
|
||||
* buildcache push: make `--allow-root` the default and deprecate the option (#38878)
|
||||
|
||||
## Notable Bugfixes
|
||||
* Bugfix: propagation of multivalued variants (#39833)
|
||||
* Allow `/` in git versions (#39398)
|
||||
* Fetch & patch: actually acquire stage lock, and many more issues (#38903)
|
||||
* Environment/depfile: better escaping of targets with Git versions (#37560)
|
||||
* Prevent "spack external find" to error out on wrong permissions (#38755)
|
||||
* lmod: allow core compiler to be specified with a version range (#37789)
|
||||
|
||||
## Spack community stats
|
||||
|
||||
* 7,469 total packages, 303 new since `v0.20.0`
|
||||
* 150 new Python packages
|
||||
* 34 new R packages
|
||||
* 353 people contributed to this release
|
||||
* 336 committers to packages
|
||||
* 65 committers to core
|
||||
|
||||
|
||||
# v0.20.3 (2023-10-31)
|
||||
|
||||
## Bugfixes
|
||||
|
||||
- Fix a bug where `spack mirror set-url` would drop configured connection info (reverts #34210)
|
||||
- Fix a minor issue with package hash computation for Python 3.12 (#40328)
|
||||
|
||||
|
||||
# v0.20.2 (2023-10-03)
|
||||
|
||||
## Features in this release
|
||||
|
||||
Spack now supports Python 3.12 (#40155)
|
||||
|
||||
## Bugfixes
|
||||
|
||||
- Improve escaping in Tcl module files (#38375)
|
||||
- Make repo cache work on repositories with zero mtime (#39214)
|
||||
- Ignore errors for newer, incompatible buildcache version (#40279)
|
||||
- Print an error when git is required, but missing (#40254)
|
||||
- Ensure missing build dependencies get installed when using `spack install --overwrite` (#40252)
|
||||
- Fix an issue where Spack freezes when the build process unexpectedly exits (#39015)
|
||||
- Fix a bug where installation failures cause an unrelated `NameError` to be thrown (#39017)
|
||||
- Fix an issue where Spack package versions would be incorrectly derived from git tags (#39414)
|
||||
- Fix a bug triggered when file locking fails internally (#39188)
|
||||
- Prevent "spack external find" to error out when a directory cannot be accessed (#38755)
|
||||
- Fix multiple performance regressions in environments (#38771)
|
||||
- Add more ignored modules to `pyproject.toml` for `mypy` (#38769)
|
||||
|
||||
|
||||
# v0.20.1 (2023-07-10)
|
||||
|
||||
## Spack Bugfixes
|
||||
|
||||
- Spec removed from an environment where not actually removed if `--force` was not given (#37877)
|
||||
- Speed-up module file generation (#37739)
|
||||
- Hotfix for a few recipes that treat CMake as a link dependency (#35816)
|
||||
- Fix re-running stand-alone test a second time, which was getting a trailing spurious failure (#37840)
|
||||
- Fixed reading JSON manifest on Cray, reporting non-concrete specs (#37909)
|
||||
- Fixed a few bugs when generating Dockerfiles from Spack (#37766,#37769)
|
||||
- Fixed a few long-standing bugs when generating module files (#36678,#38347,#38465,#38455)
|
||||
- Fixed issues with building Python extensions using an external Python (#38186)
|
||||
- Fixed compiler removal from command line (#38057)
|
||||
- Show external status as [e] (#33792)
|
||||
- Backported `archspec` fixes (#37793)
|
||||
- Improved a few error messages (#37791)
|
||||
|
||||
|
||||
# v0.20.0 (2023-05-21)
|
||||
|
||||
`v0.20.0` is a major feature release.
|
||||
|
||||
## Features in this release
|
||||
|
||||
1. **`requires()` directive and enhanced package requirements**
|
||||
|
||||
We've added some more enhancements to requirements in Spack (#36286).
|
||||
|
||||
There is a new `requires()` directive for packages. `requires()` is the opposite of
|
||||
`conflicts()`. You can use it to impose constraints on this package when certain
|
||||
conditions are met:
|
||||
|
||||
```python
|
||||
requires(
|
||||
"%apple-clang",
|
||||
when="platform=darwin",
|
||||
msg="This package builds only with clang on macOS"
|
||||
)
|
||||
```
|
||||
|
||||
More on this in [the docs](
|
||||
https://spack.rtfd.io/en/latest/packaging_guide.html#conflicts-and-requirements).
|
||||
|
||||
You can also now add a `when:` clause to `requires:` in your `packages.yaml`
|
||||
configuration or in an environment:
|
||||
|
||||
```yaml
|
||||
packages:
|
||||
openmpi:
|
||||
require:
|
||||
- any_of: ["%gcc"]
|
||||
when: "@:4.1.4"
|
||||
message: "Only OpenMPI 4.1.5 and up can build with fancy compilers"
|
||||
```
|
||||
|
||||
More details can be found [here](
|
||||
https://spack.readthedocs.io/en/latest/build_settings.html#package-requirements)
|
||||
|
||||
2. **Exact versions**
|
||||
|
||||
Spack did not previously have a way to distinguish a version if it was a prefix of
|
||||
some other version. For example, `@3.2` would match `3.2`, `3.2.1`, `3.2.2`, etc. You
|
||||
can now match *exactly* `3.2` with `@=3.2`. This is useful, for example, if you need
|
||||
to patch *only* the `3.2` version of a package. The new syntax is described in [the docs](
|
||||
https://spack.readthedocs.io/en/latest/basic_usage.html#version-specifier).
|
||||
|
||||
Generally, when writing packages, you should prefer to use ranges like `@3.2` over
|
||||
the specific versions, as this allows the concretizer more leeway when selecting
|
||||
versions of dependencies. More details and recommendations are in the [packaging guide](
|
||||
https://spack.readthedocs.io/en/latest/packaging_guide.html#ranges-versus-specific-versions).
|
||||
|
||||
See #36273 for full details on the version refactor.
|
||||
|
||||
3. **New testing interface**
|
||||
|
||||
Writing package tests is now much simpler with a new [test interface](
|
||||
https://spack.readthedocs.io/en/latest/packaging_guide.html#stand-alone-tests).
|
||||
|
||||
Writing a test is now as easy as adding a method that starts with `test_`:
|
||||
|
||||
```python
|
||||
class MyPackage(Package):
|
||||
...
|
||||
|
||||
def test_always_fails(self):
|
||||
"""use assert to always fail"""
|
||||
assert False
|
||||
|
||||
def test_example(self):
|
||||
"""run installed example"""
|
||||
example = which(self.prefix.bin.example)
|
||||
example()
|
||||
```
|
||||
|
||||
You can use Python's native `assert` statement to implement your checks -- no more
|
||||
need to fiddle with `run_test` or other test framework methods. Spack will
|
||||
introspect the class and run `test_*` methods when you run `spack test`,
|
||||
|
||||
4. **More stable concretization**
|
||||
|
||||
* Now, `spack concretize` will *only* concretize the new portions of the environment
|
||||
and will not change existing parts of an environment unless you specify `--force`.
|
||||
This has always been true for `unify:false`, but not for `unify:true` and
|
||||
`unify:when_possible` environments. Now it is true for all of them (#37438, #37681).
|
||||
|
||||
* The concretizer has a new `--reuse-deps` argument that *only* reuses dependencies.
|
||||
That is, it will always treat the *roots* of your environment as it would with
|
||||
`--fresh`. This allows you to upgrade just the roots of your environment while
|
||||
keeping everything else stable (#30990).
|
||||
|
||||
5. **Weekly develop snapshot releases**
|
||||
|
||||
Since last year, we have maintained a buildcache of `develop` at
|
||||
https://binaries.spack.io/develop, but the cache can grow to contain so many builds
|
||||
as to be unwieldy. When we get a stable `develop` build, we snapshot the release and
|
||||
add a corresponding tag the Spack repository. So, you can use a stack from a specific
|
||||
day. There are now tags in the spack repository like:
|
||||
|
||||
* `develop-2023-05-14`
|
||||
* `develop-2023-05-18`
|
||||
|
||||
that correspond to build caches like:
|
||||
|
||||
* https://binaries.spack.io/develop-2023-05-14/e4s
|
||||
* https://binaries.spack.io/develop-2023-05-18/e4s
|
||||
|
||||
We plan to store these snapshot releases weekly.
|
||||
|
||||
6. **Specs in buildcaches can be referenced by hash.**
|
||||
|
||||
* Previously, you could run `spack buildcache list` and see the hashes in
|
||||
buildcaches, but referring to them by hash would fail.
|
||||
* You can now run commands like `spack spec` and `spack install` and refer to
|
||||
buildcache hashes directly, e.g. `spack install /abc123` (#35042)
|
||||
|
||||
7. **New package and buildcache index websites**
|
||||
|
||||
Our public websites for searching packages have been completely revamped and updated.
|
||||
You can check them out here:
|
||||
|
||||
* *Package Index*: https://packages.spack.io
|
||||
* *Buildcache Index*: https://cache.spack.io
|
||||
|
||||
Both are searchable and more interactive than before. Currently major releases are
|
||||
shown; UI for browsing `develop` snapshots is coming soon.
|
||||
|
||||
8. **Default CMake and Meson build types are now Release**
|
||||
|
||||
Spack has historically defaulted to building with optimization and debugging, but
|
||||
packages like `llvm` can be enormous with debug turned on. Our default build type for
|
||||
all Spack packages is now `Release` (#36679, #37436). This has a number of benefits:
|
||||
|
||||
* much smaller binaries;
|
||||
* higher default optimization level; and
|
||||
* defining `NDEBUG` disables assertions, which may lead to further speedups.
|
||||
|
||||
You can still get the old behavior back through requirements and package preferences.
|
||||
|
||||
## Other new commands and directives
|
||||
|
||||
* `spack checksum` can automatically add new versions to package (#24532)
|
||||
* new command: `spack pkg grep` to easily search package files (#34388)
|
||||
* New `maintainers` directive (#35083)
|
||||
* Add `spack buildcache push` (alias to `buildcache create`) (#34861)
|
||||
* Allow using `-j` to control the parallelism of concretization (#37608)
|
||||
* Add `--exclude` option to 'spack external find' (#35013)
|
||||
|
||||
## Other new features of note
|
||||
|
||||
* editing: add higher-precedence `SPACK_EDITOR` environment variable
|
||||
* Many YAML formatting improvements from updating `ruamel.yaml` to the latest version
|
||||
supporting Python 3.6. (#31091, #24885, #37008).
|
||||
* Requirements and preferences should not define (non-git) versions (#37687, #37747)
|
||||
* Environments now store spack version/commit in `spack.lock` (#32801)
|
||||
* User can specify the name of the `packages` subdirectory in repositories (#36643)
|
||||
* Add container images supporting RHEL alternatives (#36713)
|
||||
* make version(...) kwargs explicit (#36998)
|
||||
|
||||
## Notable refactors
|
||||
|
||||
* buildcache create: reproducible tarballs (#35623)
|
||||
* Bootstrap most of Spack dependencies using environments (#34029)
|
||||
* Split `satisfies(..., strict=True/False)` into two functions (#35681)
|
||||
* spack install: simplify behavior when inside environments (#35206)
|
||||
|
||||
## Binary cache and stack updates
|
||||
|
||||
* Major simplification of CI boilerplate in stacks (#34272, #36045)
|
||||
* Many improvements to our CI pipeline's reliability
|
||||
|
||||
## Removals, Deprecations, and disablements
|
||||
* Module file generation is disabled by default; you'll need to enable it to use it (#37258)
|
||||
* Support for Python 2 was deprecated in `v0.19.0` and has been removed. `v0.20.0` only
|
||||
supports Python 3.6 and higher.
|
||||
* Deprecated target names are no longer recognized by Spack. Use generic names instead:
|
||||
* `graviton` is now `cortex_a72`
|
||||
* `graviton2` is now `neoverse_n1`
|
||||
* `graviton3` is now `neoverse_v1`
|
||||
* `blacklist` and `whitelist` in module configuration were deprecated in `v0.19.0` and are
|
||||
removed in this release. Use `exclude` and `include` instead.
|
||||
* The `ignore=` parameter of the `extends()` directive has been removed. It was not used by
|
||||
any builtin packages and is no longer needed to avoid conflicts in environment views (#35588).
|
||||
* Support for the old YAML buildcache format has been removed. It was deprecated in `v0.19.0` (#34347).
|
||||
* `spack find --bootstrap` has been removed. It was deprecated in `v0.19.0`. Use `spack
|
||||
--bootstrap find` instead (#33964).
|
||||
* `spack bootstrap trust` and `spack bootstrap untrust` are now removed, having been
|
||||
deprecated in `v0.19.0`. Use `spack bootstrap enable` and `spack bootstrap disable`.
|
||||
* The `--mirror-name`, `--mirror-url`, and `--directory` options to buildcache and
|
||||
mirror commands were deprecated in `v0.19.0` and have now been removed. They have been
|
||||
replaced by positional arguments (#37457).
|
||||
* Deprecate `env:` as top level environment key (#37424)
|
||||
* deprecate buildcache create --rel, buildcache install --allow-root (#37285)
|
||||
* Support for very old perl-like spec format strings (e.g., `$_$@$%@+$+$=`) has been
|
||||
removed (#37425). This was deprecated in in `v0.15` (#10556).
|
||||
|
||||
## Notable Bugfixes
|
||||
|
||||
* bugfix: don't fetch package metadata for unknown concrete specs (#36990)
|
||||
* Improve package source code context display on error (#37655)
|
||||
* Relax environment manifest filename requirements and lockfile identification criteria (#37413)
|
||||
* `installer.py`: drop build edges of installed packages by default (#36707)
|
||||
* Bugfix: package requirements with git commits (#35057, #36347)
|
||||
* Package requirements: allow single specs in requirement lists (#36258)
|
||||
* conditional variant values: allow boolean (#33939)
|
||||
* spack uninstall: follow run/link edges on --dependents (#34058)
|
||||
|
||||
## Spack community stats
|
||||
|
||||
* 7,179 total packages, 499 new since `v0.19.0`
|
||||
* 329 new Python packages
|
||||
* 31 new R packages
|
||||
* 336 people contributed to this release
|
||||
* 317 committers to packages
|
||||
* 62 committers to core
|
||||
|
||||
|
||||
# v0.19.1 (2023-02-07)
|
||||
|
||||
### Spack Bugfixes
|
||||
|
||||
* `buildcache create`: make "file exists" less verbose (#35019)
|
||||
* `spack mirror create`: don't change paths to urls (#34992)
|
||||
* Improve error message for requirements (#33988)
|
||||
* uninstall: fix accidental cubic complexity (#34005)
|
||||
* scons: fix signature for `install_args` (#34481)
|
||||
* Fix `combine_phase_logs` text encoding issues (#34657)
|
||||
* Use a module-like object to propagate changes in the MRO, when setting build env (#34059)
|
||||
* PackageBase should not define builder legacy attributes (#33942)
|
||||
* Forward lookup of the "run_tests" attribute (#34531)
|
||||
* Bugfix for timers (#33917, #33900)
|
||||
* Fix path handling in prefix inspections (#35318)
|
||||
* Fix libtool filter for Fujitsu compilers (#34916)
|
||||
* Bug fix for duplicate rpath errors on macOS when creating build caches (#34375)
|
||||
* FileCache: delete the new cache file on exception (#34623)
|
||||
* Propagate exceptions from Spack python console (#34547)
|
||||
* Tests: Fix a bug/typo in a `config_values.py` fixture (#33886)
|
||||
* Various CI fixes (#33953, #34560, #34560, #34828)
|
||||
* Docs: remove monitors and analyzers, typos (#34358, #33926)
|
||||
* bump release version for tutorial command (#33859)
|
||||
|
||||
|
||||
# v0.19.0 (2022-11-11)
|
||||
|
||||
`v0.19.0` is a major feature release.
|
||||
|
||||
## Major features in this release
|
||||
|
||||
1. **Package requirements**
|
||||
|
||||
Spack's traditional [package preferences](
|
||||
https://spack.readthedocs.io/en/latest/build_settings.html#package-preferences)
|
||||
are soft, but we've added hard requriements to `packages.yaml` and `spack.yaml`
|
||||
(#32528, #32369). Package requirements use the same syntax as specs:
|
||||
|
||||
```yaml
|
||||
packages:
|
||||
libfabric:
|
||||
require: "@1.13.2"
|
||||
mpich:
|
||||
require:
|
||||
- one_of: ["+cuda", "+rocm"]
|
||||
```
|
||||
|
||||
More details in [the docs](
|
||||
https://spack.readthedocs.io/en/latest/build_settings.html#package-requirements).
|
||||
|
||||
2. **Environment UI Improvements**
|
||||
|
||||
* Fewer surprising modifications to `spack.yaml` (#33711):
|
||||
|
||||
* `spack install` in an environment will no longer add to the `specs:` list; you'll
|
||||
need to either use `spack add <spec>` or `spack install --add <spec>`.
|
||||
|
||||
* Similarly, `spack uninstall` will not remove from your environment's `specs:`
|
||||
list; you'll need to use `spack remove` or `spack uninstall --remove`.
|
||||
|
||||
This will make it easier to manage an environment, as there is clear separation
|
||||
between the stack to be installed (`spack.yaml`/`spack.lock`) and which parts of
|
||||
it should be installed (`spack install` / `spack uninstall`).
|
||||
|
||||
* `concretizer:unify:true` is now the default mode for new environments (#31787)
|
||||
|
||||
We see more users creating `unify:true` environments now. Users who need
|
||||
`unify:false` can add it to their environment to get the old behavior. This will
|
||||
concretize every spec in the environment independently.
|
||||
|
||||
* Include environment configuration from URLs (#29026, [docs](
|
||||
https://spack.readthedocs.io/en/latest/environments.html#included-configurations))
|
||||
|
||||
You can now include configuration in your environment directly from a URL:
|
||||
|
||||
```yaml
|
||||
spack:
|
||||
include:
|
||||
- https://github.com/path/to/raw/config/compilers.yaml
|
||||
```
|
||||
|
||||
4. **Multiple Build Systems**
|
||||
|
||||
An increasing number of packages in the ecosystem need the ability to support
|
||||
multiple build systems (#30738, [docs](
|
||||
https://spack.readthedocs.io/en/latest/packaging_guide.html#multiple-build-systems)),
|
||||
either across versions, across platforms, or within the same version of the software.
|
||||
This has been hard to support through multiple inheritance, as methods from different
|
||||
build system superclasses would conflict. `package.py` files can now define separate
|
||||
builder classes with installation logic for different build systems, e.g.:
|
||||
|
||||
```python
|
||||
class ArpackNg(CMakePackage, AutotoolsPackage):
|
||||
|
||||
build_system(
|
||||
conditional("cmake", when="@0.64:"),
|
||||
conditional("autotools", when="@:0.63"),
|
||||
default="cmake",
|
||||
)
|
||||
|
||||
class CMakeBuilder(spack.build_systems.cmake.CMakeBuilder):
|
||||
def cmake_args(self):
|
||||
pass
|
||||
|
||||
class Autotoolsbuilder(spack.build_systems.autotools.AutotoolsBuilder):
|
||||
def configure_args(self):
|
||||
pass
|
||||
```
|
||||
|
||||
5. **Compiler and variant propagation**
|
||||
|
||||
Currently, compiler flags and variants are inconsistent: compiler flags set for a
|
||||
package are inherited by its dependencies, while variants are not. We should have
|
||||
these be consistent by allowing for inheritance to be enabled or disabled for both
|
||||
variants and compiler flags.
|
||||
|
||||
Example syntax:
|
||||
- `package ++variant`:
|
||||
enabled variant that will be propagated to dependencies
|
||||
- `package +variant`:
|
||||
enabled variant that will NOT be propagated to dependencies
|
||||
- `package ~~variant`:
|
||||
disabled variant that will be propagated to dependencies
|
||||
- `package ~variant`:
|
||||
disabled variant that will NOT be propagated to dependencies
|
||||
- `package cflags==-g`:
|
||||
`cflags` will be propagated to dependencies
|
||||
- `package cflags=-g`:
|
||||
`cflags` will NOT be propagated to dependencies
|
||||
|
||||
Syntax for non-boolan variants is similar to compiler flags. More in the docs for
|
||||
[variants](
|
||||
https://spack.readthedocs.io/en/latest/basic_usage.html#variants) and [compiler flags](
|
||||
https://spack.readthedocs.io/en/latest/basic_usage.html#compiler-flags).
|
||||
|
||||
6. **Enhancements to git version specifiers**
|
||||
|
||||
* `v0.18.0` added the ability to use git commits as versions. You can now use the
|
||||
`git.` prefix to specify git tags or branches as versions. All of these are valid git
|
||||
versions in `v0.19` (#31200):
|
||||
|
||||
```console
|
||||
foo@abcdef1234abcdef1234abcdef1234abcdef1234 # raw commit
|
||||
foo@git.abcdef1234abcdef1234abcdef1234abcdef1234 # commit with git prefix
|
||||
foo@git.develop # the develop branch
|
||||
foo@git.0.19 # use the 0.19 tag
|
||||
```
|
||||
|
||||
* `v0.19` also gives you more control over how Spack interprets git versions, in case
|
||||
Spack cannot detect the version from the git repository. You can suffix a git
|
||||
version with `=<version>` to force Spack to concretize it as a particular version
|
||||
(#30998, #31914, #32257):
|
||||
|
||||
```console
|
||||
# use mybranch, but treat it as version 3.2 for version comparison
|
||||
foo@git.mybranch=3.2
|
||||
|
||||
# use the given commit, but treat it as develop for version comparison
|
||||
foo@git.abcdef1234abcdef1234abcdef1234abcdef1234=develop
|
||||
```
|
||||
|
||||
More in [the docs](
|
||||
https://spack.readthedocs.io/en/latest/basic_usage.html#version-specifier)
|
||||
|
||||
7. **Changes to Cray EX Support**
|
||||
|
||||
Cray machines have historically had their own "platform" within Spack, because we
|
||||
needed to go through the module system to leverage compilers and MPI installations on
|
||||
these machines. The Cray EX programming environment now provides standalone `craycc`
|
||||
executables and proper `mpicc` wrappers, so Spack can treat EX machines like Linux
|
||||
with extra packages (#29392).
|
||||
|
||||
We expect this to greatly reduce bugs, as external packages and compilers can now be
|
||||
used by prefix instead of through modules. We will also no longer be subject to
|
||||
reproducibility issues when modules change from Cray PE release to release and from
|
||||
site to site. This also simplifies dealing with the underlying Linux OS on cray
|
||||
systems, as Spack will properly model the machine's OS as either SuSE or RHEL.
|
||||
|
||||
8. **Improvements to tests and testing in CI**
|
||||
|
||||
* `spack ci generate --tests` will generate a `.gitlab-ci.yml` file that not only does
|
||||
builds but also runs tests for built packages (#27877). Public GitHub pipelines now
|
||||
also run tests in CI.
|
||||
|
||||
* `spack test run --explicit` will only run tests for packages that are explicitly
|
||||
installed, instead of all packages.
|
||||
|
||||
9. **Experimental binding link model**
|
||||
|
||||
You can add a new option to `config.yaml` to make Spack embed absolute paths to
|
||||
needed shared libraries in ELF executables and shared libraries on Linux (#31948, [docs](
|
||||
https://spack.readthedocs.io/en/latest/config_yaml.html#shared-linking-bind)):
|
||||
|
||||
```yaml
|
||||
config:
|
||||
shared_linking:
|
||||
type: rpath
|
||||
bind: true
|
||||
```
|
||||
|
||||
This can improve launch time at scale for parallel applications, and it can make
|
||||
installations less susceptible to environment variables like `LD_LIBRARY_PATH`, even
|
||||
especially when dealing with external libraries that use `RUNPATH`. You can think of
|
||||
this as a faster, even higher-precedence version of `RPATH`.
|
||||
|
||||
## Other new features of note
|
||||
|
||||
* `spack spec` prints dependencies more legibly. Dependencies in the output now appear
|
||||
at the *earliest* level of indentation possible (#33406)
|
||||
* You can override `package.py` attributes like `url`, directly in `packages.yaml`
|
||||
(#33275, [docs](
|
||||
https://spack.readthedocs.io/en/latest/build_settings.html#assigning-package-attributes))
|
||||
* There are a number of new architecture-related format strings you can use in Spack
|
||||
configuration files to specify paths (#29810, [docs](
|
||||
https://spack.readthedocs.io/en/latest/configuration.html#config-file-variables))
|
||||
* Spack now supports bootstrapping Clingo on Windows (#33400)
|
||||
* There is now support for an `RPATH`-like library model on Windows (#31930)
|
||||
|
||||
## Performance Improvements
|
||||
|
||||
* Major performance improvements for installation from binary caches (#27610, #33628,
|
||||
#33636, #33608, #33590, #33496)
|
||||
* Test suite can now be parallelized using `xdist` (used in GitHub Actions) (#32361)
|
||||
* Reduce lock contention for parallel builds in environments (#31643)
|
||||
|
||||
## New binary caches and stacks
|
||||
|
||||
* We now build nearly all of E4S with `oneapi` in our buildcache (#31781, #31804,
|
||||
#31804, #31803, #31840, #31991, #32117, #32107, #32239)
|
||||
* Added 3 new machine learning-centric stacks to binary cache: `x86_64_v3`, CUDA, ROCm
|
||||
(#31592, #33463)
|
||||
|
||||
## Removals and Deprecations
|
||||
|
||||
* Support for Python 3.5 is dropped (#31908). Only Python 2.7 and 3.6+ are officially
|
||||
supported.
|
||||
|
||||
* This is the last Spack release that will support Python 2 (#32615). Spack `v0.19`
|
||||
will emit a deprecation warning if you run it with Python 2, and Python 2 support will
|
||||
soon be removed from the `develop` branch.
|
||||
|
||||
* `LD_LIBRARY_PATH` is no longer set by default by `spack load` or module loads.
|
||||
|
||||
Setting `LD_LIBRARY_PATH` in Spack environments/modules can cause binaries from
|
||||
outside of Spack to crash, and Spack's own builds use `RPATH` and do not need
|
||||
`LD_LIBRARY_PATH` set in order to run. If you still want the old behavior, you
|
||||
can run these commands to configure Spack to set `LD_LIBRARY_PATH`:
|
||||
|
||||
```console
|
||||
spack config add modules:prefix_inspections:lib64:[LD_LIBRARY_PATH]
|
||||
spack config add modules:prefix_inspections:lib:[LD_LIBRARY_PATH]
|
||||
```
|
||||
|
||||
* The `spack:concretization:[together|separately]` has been removed after being
|
||||
deprecated in `v0.18`. Use `concretizer:unify:[true|false]`.
|
||||
* `config:module_roots` is no longer supported after being deprecated in `v0.18`. Use
|
||||
configuration in module sets instead (#28659, [docs](
|
||||
https://spack.readthedocs.io/en/latest/module_file_support.html)).
|
||||
* `spack activate` and `spack deactivate` are no longer supported, having been
|
||||
deprecated in `v0.18`. Use an environment with a view instead of
|
||||
activating/deactivating ([docs](
|
||||
https://spack.readthedocs.io/en/latest/environments.html#configuration-in-spack-yaml)).
|
||||
* The old YAML format for buildcaches is now deprecated (#33707). If you are using an
|
||||
old buildcache with YAML metadata you will need to regenerate it with JSON metadata.
|
||||
* `spack bootstrap trust` and `spack bootstrap untrust` are deprecated in favor of
|
||||
`spack bootstrap enable` and `spack bootstrap disable` and will be removed in `v0.20`.
|
||||
(#33600)
|
||||
* The `graviton2` architecture has been renamed to `neoverse_n1`, and `graviton3`
|
||||
is now `neoverse_v1`. Buildcaches using the old architecture names will need to be rebuilt.
|
||||
* The terms `blacklist` and `whitelist` have been replaced with `include` and `exclude`
|
||||
in all configuration files (#31569). You can use `spack config update` to
|
||||
automatically fix your configuration files.
|
||||
|
||||
## Notable Bugfixes
|
||||
|
||||
* Permission setting on installation now handles effective uid properly (#19980)
|
||||
* `buildable:true` for an MPI implementation now overrides `buildable:false` for `mpi` (#18269)
|
||||
* Improved error messages when attempting to use an unconfigured compiler (#32084)
|
||||
* Do not punish explicitly requested compiler mismatches in the solver (#30074)
|
||||
* `spack stage`: add missing --fresh and --reuse (#31626)
|
||||
* Fixes for adding build system executables like `cmake` to package scope (#31739)
|
||||
* Bugfix for binary relocation with aliased strings produced by newer `binutils` (#32253)
|
||||
|
||||
## Spack community stats
|
||||
|
||||
* 6,751 total packages, 335 new since `v0.18.0`
|
||||
* 141 new Python packages
|
||||
* 89 new R packages
|
||||
* 303 people contributed to this release
|
||||
* 287 committers to packages
|
||||
* 57 committers to core
|
||||
|
||||
|
||||
# v0.18.1 (2022-07-19)
|
||||
|
||||
### Spack Bugfixes
|
||||
* Fix several bugs related to bootstrapping (#30834,#31042,#31180)
|
||||
* Fix a regression that was causing spec hashes to differ between
|
||||
* Fix a regression that was causing spec hashes to differ between
|
||||
Python 2 and Python 3 (#31092)
|
||||
* Fixed compiler flags for oneAPI and DPC++ (#30856)
|
||||
* Fixed several issues related to concretization (#31142,#31153,#31170,#31226)
|
||||
* Improved support for Cray manifest file and `spack external find` (#31144,#31201,#31173,#31186)
|
||||
* Assign a version to openSUSE Tumbleweed according to the GLIBC version
|
||||
in the system (#19895)
|
||||
in the system (#19895)
|
||||
* Improved Dockerfile generation for `spack containerize` (#29741,#31321)
|
||||
* Fixed a few bugs related to concurrent execution of commands (#31509,#31493,#31477)
|
||||
* Fixed a few bugs related to concurrent execution of commands (#31509,#31493,#31477)
|
||||
|
||||
### Package updates
|
||||
* WarpX: add v22.06, fixed libs property (#30866,#31102)
|
||||
|
58
CITATION.cff
58
CITATION.cff
@@ -27,57 +27,12 @@
|
||||
# And here's the CITATION.cff format:
|
||||
#
|
||||
cff-version: 1.2.0
|
||||
type: software
|
||||
message: "If you are referencing Spack in a publication, please cite the paper below."
|
||||
title: "The Spack Package Manager: Bringing Order to HPC Software Chaos"
|
||||
abstract: >-
|
||||
Large HPC centers spend considerable time supporting software for thousands of users, but the
|
||||
complexity of HPC software is quickly outpacing the capabilities of existing software management
|
||||
tools. Scientific applications require specific versions of compilers, MPI, and other dependency
|
||||
libraries, so using a single, standard software stack is infeasible. However, managing many
|
||||
configurations is difficult because the configuration space is combinatorial in size. We
|
||||
introduce Spack, a tool used at Lawrence Livermore National Laboratory to manage this complexity.
|
||||
Spack provides a novel, re- cursive specification syntax to invoke parametric builds of packages
|
||||
and dependencies. It allows any number of builds to coexist on the same system, and it ensures
|
||||
that installed packages can find their dependencies, regardless of the environment. We show
|
||||
through real-world use cases that Spack supports diverse and demanding applications, bringing
|
||||
order to HPC software chaos.
|
||||
preferred-citation:
|
||||
title: "The Spack Package Manager: Bringing Order to HPC Software Chaos"
|
||||
type: conference-paper
|
||||
url: "https://tgamblin.github.io/pubs/spack-sc15.pdf"
|
||||
doi: "10.1145/2807591.2807623"
|
||||
url: "https://github.com/spack/spack"
|
||||
authors:
|
||||
- family-names: "Gamblin"
|
||||
given-names: "Todd"
|
||||
- family-names: "LeGendre"
|
||||
given-names: "Matthew"
|
||||
- family-names: "Collette"
|
||||
given-names: "Michael R."
|
||||
- family-names: "Lee"
|
||||
given-names: "Gregory L."
|
||||
- family-names: "Moody"
|
||||
given-names: "Adam"
|
||||
- family-names: "de Supinski"
|
||||
given-names: "Bronis R."
|
||||
- family-names: "Futral"
|
||||
given-names: "Scott"
|
||||
conference:
|
||||
name: "Supercomputing 2015 (SC’15)"
|
||||
city: "Austin"
|
||||
region: "Texas"
|
||||
country: "US"
|
||||
date-start: 2015-11-15
|
||||
date-end: 2015-11-20
|
||||
month: 11
|
||||
year: 2015
|
||||
identifiers:
|
||||
- description: "The concept DOI of the work."
|
||||
type: doi
|
||||
value: 10.1145/2807591.2807623
|
||||
- description: "The DOE Document Release Number of the work"
|
||||
type: other
|
||||
value: "LLNL-CONF-669890"
|
||||
authors:
|
||||
- family-names: "Gamblin"
|
||||
given-names: "Todd"
|
||||
- family-names: "LeGendre"
|
||||
@@ -92,3 +47,12 @@ authors:
|
||||
given-names: "Bronis R."
|
||||
- family-names: "Futral"
|
||||
given-names: "Scott"
|
||||
title: "The Spack Package Manager: Bringing Order to HPC Software Chaos"
|
||||
conference:
|
||||
name: "Supercomputing 2015 (SC’15)"
|
||||
city: "Austin"
|
||||
region: "Texas"
|
||||
country: "USA"
|
||||
month: November 15-20
|
||||
year: 2015
|
||||
notes: LLNL-CONF-669890
|
||||
|
@@ -1,6 +1,6 @@
|
||||
MIT License
|
||||
|
||||
Copyright (c) 2013-2024 LLNS, LLC and other Spack Project Developers.
|
||||
Copyright (c) 2013-2022 LLNS, LLC and other Spack Project Developers.
|
||||
|
||||
Permission is hereby granted, free of charge, to any person obtaining a copy
|
||||
of this software and associated documentation files (the "Software"), to deal
|
||||
|
48
README.md
48
README.md
@@ -1,34 +1,12 @@
|
||||
<div align="left">
|
||||
# <img src="https://cdn.rawgit.com/spack/spack/develop/share/spack/logo/spack-logo.svg" width="64" valign="middle" alt="Spack"/> Spack
|
||||
|
||||
<h2>
|
||||
<picture>
|
||||
<source media="(prefers-color-scheme: dark)" srcset="https://cdn.rawgit.com/spack/spack/develop/share/spack/logo/spack-logo-white-text.svg" width="250">
|
||||
<source media="(prefers-color-scheme: light)" srcset="https://cdn.rawgit.com/spack/spack/develop/share/spack/logo/spack-logo-text.svg" width="250">
|
||||
<img alt="Spack" src="https://cdn.rawgit.com/spack/spack/develop/share/spack/logo/spack-logo-text.svg" width="250">
|
||||
</picture>
|
||||
|
||||
<br>
|
||||
<br clear="all">
|
||||
|
||||
<a href="https://github.com/spack/spack/actions/workflows/ci.yml"><img src="https://github.com/spack/spack/workflows/ci/badge.svg" alt="CI Status"></a>
|
||||
<a href="https://github.com/spack/spack/actions/workflows/bootstrapping.yml"><img src="https://github.com/spack/spack/actions/workflows/bootstrap.yml/badge.svg" alt="Bootstrap Status"></a>
|
||||
<a href="https://github.com/spack/spack/actions/workflows/build-containers.yml"><img src="https://github.com/spack/spack/actions/workflows/build-containers.yml/badge.svg" alt="Containers Status"></a>
|
||||
<a href="https://spack.readthedocs.io"><img src="https://readthedocs.org/projects/spack/badge/?version=latest" alt="Documentation Status"></a>
|
||||
<a href="https://codecov.io/gh/spack/spack"><img src="https://codecov.io/gh/spack/spack/branch/develop/graph/badge.svg" alt="Code coverage"/></a>
|
||||
<a href="https://slack.spack.io"><img src="https://slack.spack.io/badge.svg" alt="Slack"/></a>
|
||||
<a href="https://matrix.to/#/#spack-space:matrix.org"><img src="https://img.shields.io/matrix/spack-space%3Amatrix.org?label=matrix" alt="Matrix"/></a>
|
||||
|
||||
</h2>
|
||||
|
||||
**[Getting Started] • [Config] • [Community] • [Contributing] • [Packaging Guide]**
|
||||
|
||||
[Getting Started]: https://spack.readthedocs.io/en/latest/getting_started.html
|
||||
[Config]: https://spack.readthedocs.io/en/latest/configuration.html
|
||||
[Community]: #community
|
||||
[Contributing]: https://spack.readthedocs.io/en/latest/contribution_guide.html
|
||||
[Packaging Guide]: https://spack.readthedocs.io/en/latest/packaging_guide.html
|
||||
|
||||
</div>
|
||||
[](https://github.com/spack/spack/actions)
|
||||
[](https://github.com/spack/spack/actions/workflows/bootstrap.yml)
|
||||
[](https://codecov.io/gh/spack/spack)
|
||||
[](https://github.com/spack/spack/actions/workflows/build-containers.yml)
|
||||
[](https://spack.readthedocs.io)
|
||||
[](https://github.com/psf/black)
|
||||
[](https://slack.spack.io)
|
||||
|
||||
Spack is a multi-platform package manager that builds and installs
|
||||
multiple versions and configurations of software. It works on Linux,
|
||||
@@ -84,14 +62,10 @@ Resources:
|
||||
|
||||
* **Slack workspace**: [spackpm.slack.com](https://spackpm.slack.com).
|
||||
To get an invitation, visit [slack.spack.io](https://slack.spack.io).
|
||||
* **Matrix space**: [#spack-space:matrix.org](https://matrix.to/#/#spack-space:matrix.org):
|
||||
[bridged](https://github.com/matrix-org/matrix-appservice-slack#matrix-appservice-slack) to Slack.
|
||||
* [**Github Discussions**](https://github.com/spack/spack/discussions):
|
||||
for Q&A and discussions. Note the pinned discussions for announcements.
|
||||
* **X**: [@spackpm](https://twitter.com/spackpm). Be sure to
|
||||
* [**Github Discussions**](https://github.com/spack/spack/discussions): not just for discussions, also Q&A.
|
||||
* **Mailing list**: [groups.google.com/d/forum/spack](https://groups.google.com/d/forum/spack)
|
||||
* **Twitter**: [@spackpm](https://twitter.com/spackpm). Be sure to
|
||||
`@mention` us!
|
||||
* **Mailing list**: [groups.google.com/d/forum/spack](https://groups.google.com/d/forum/spack):
|
||||
only for announcements. Please use other venues for discussions.
|
||||
|
||||
Contributing
|
||||
------------------------
|
||||
|
32
SECURITY.md
32
SECURITY.md
@@ -2,26 +2,24 @@
|
||||
|
||||
## Supported Versions
|
||||
|
||||
We provide security updates for `develop` and for the last two
|
||||
stable (`0.x`) release series of Spack. Security updates will be
|
||||
made available as patch (`0.x.1`, `0.x.2`, etc.) releases.
|
||||
|
||||
We provide security updates for the following releases.
|
||||
For more on Spack's release structure, see
|
||||
[`README.md`](https://github.com/spack/spack#releases).
|
||||
|
||||
|
||||
| Version | Supported |
|
||||
| ------- | ------------------ |
|
||||
| develop | :white_check_mark: |
|
||||
| 0.17.x | :white_check_mark: |
|
||||
| 0.16.x | :white_check_mark: |
|
||||
|
||||
## Reporting a Vulnerability
|
||||
|
||||
You can report a vulnerability using GitHub's private reporting
|
||||
feature:
|
||||
To report a vulnerability or other security
|
||||
issue, email maintainers@spack.io.
|
||||
|
||||
1. Go to [github.com/spack/spack/security](https://github.com/spack/spack/security).
|
||||
2. Click "Report a vulnerability" in the upper right corner of that page.
|
||||
3. Fill out the form and submit your draft security advisory.
|
||||
|
||||
More details are available in
|
||||
[GitHub's docs](https://docs.github.com/en/code-security/security-advisories/guidance-on-reporting-and-writing/privately-reporting-a-security-vulnerability).
|
||||
|
||||
You can expect to hear back about security issues within two days.
|
||||
If your security issue is accepted, we will do our best to release
|
||||
a fix within a week. If fixing the issue will take longer than
|
||||
this, we will discuss timeline options with you.
|
||||
You can expect to hear back within two days.
|
||||
If your security issue is accepted, we will do
|
||||
our best to release a fix within a week. If
|
||||
fixing the issue will take longer than this,
|
||||
we will discuss timeline options with you.
|
||||
|
@@ -1,4 +1,4 @@
|
||||
# Copyright 2013-2024 Lawrence Livermore National Security, LLC and other
|
||||
# Copyright 2013-2021 Lawrence Livermore National Security, LLC and other
|
||||
# Spack Project Developers. See the top-level COPYRIGHT file for details.
|
||||
#
|
||||
# SPDX-License-Identifier: (Apache-2.0 OR MIT)
|
||||
@@ -10,7 +10,6 @@ def getpywin():
|
||||
try:
|
||||
import win32con # noqa: F401
|
||||
except ImportError:
|
||||
print("pyWin32 not installed but is required...\nInstalling via pip:")
|
||||
subprocess.check_call([sys.executable, "-m", "pip", "-q", "install", "--upgrade", "pip"])
|
||||
subprocess.check_call([sys.executable, "-m", "pip", "-q", "install", "pywin32"])
|
||||
|
||||
|
@@ -1,6 +1,6 @@
|
||||
#!/bin/sh
|
||||
#
|
||||
# Copyright 2013-2024 Lawrence Livermore National Security, LLC and other
|
||||
# Copyright 2013-2021 Lawrence Livermore National Security, LLC and other
|
||||
# sbang project developers. See the top-level COPYRIGHT file for details.
|
||||
#
|
||||
# SPDX-License-Identifier: (Apache-2.0 OR MIT)
|
||||
|
60
bin/spack
60
bin/spack
@@ -1,7 +1,7 @@
|
||||
#!/bin/sh
|
||||
# -*- python -*-
|
||||
#
|
||||
# Copyright 2013-2024 Lawrence Livermore National Security, LLC and other
|
||||
# Copyright 2013-2022 Lawrence Livermore National Security, LLC and other
|
||||
# Spack Project Developers. See the top-level COPYRIGHT file for details.
|
||||
#
|
||||
# SPDX-License-Identifier: (Apache-2.0 OR MIT)
|
||||
@@ -25,15 +25,19 @@ exit 1
|
||||
# Line above is a shell no-op, and ends a python multi-line comment.
|
||||
# The code above runs this file with our preferred python interpreter.
|
||||
|
||||
from __future__ import print_function
|
||||
|
||||
import os
|
||||
import os.path
|
||||
import sys
|
||||
|
||||
min_python3 = (3, 6)
|
||||
min_python3 = (3, 5)
|
||||
|
||||
if sys.version_info[:2] < min_python3:
|
||||
if sys.version_info[:2] < (2, 7) or (
|
||||
sys.version_info[:2] >= (3, 0) and sys.version_info[:2] < min_python3
|
||||
):
|
||||
v_info = sys.version_info[:3]
|
||||
msg = "Spack requires Python %d.%d or higher " % min_python3
|
||||
msg = "Spack requires Python 2.7 or %d.%d or higher " % min_python3
|
||||
msg += "You are running spack with Python %d.%d.%d." % v_info
|
||||
sys.exit(msg)
|
||||
|
||||
@@ -45,8 +49,52 @@ spack_prefix = os.path.dirname(os.path.dirname(spack_file))
|
||||
spack_lib_path = os.path.join(spack_prefix, "lib", "spack")
|
||||
sys.path.insert(0, spack_lib_path)
|
||||
|
||||
from spack_installable.main import main # noqa: E402
|
||||
# Add external libs
|
||||
spack_external_libs = os.path.join(spack_lib_path, "external")
|
||||
|
||||
if sys.version_info[:2] <= (2, 7):
|
||||
sys.path.insert(0, os.path.join(spack_external_libs, "py2"))
|
||||
|
||||
sys.path.insert(0, spack_external_libs)
|
||||
|
||||
# Here we delete ruamel.yaml in case it has been already imported from site
|
||||
# (see #9206 for a broader description of the issue).
|
||||
#
|
||||
# Briefly: ruamel.yaml produces a .pth file when installed with pip that
|
||||
# makes the site installed package the preferred one, even though sys.path
|
||||
# is modified to point to another version of ruamel.yaml.
|
||||
if "ruamel.yaml" in sys.modules:
|
||||
del sys.modules["ruamel.yaml"]
|
||||
|
||||
if "ruamel" in sys.modules:
|
||||
del sys.modules["ruamel"]
|
||||
|
||||
# The following code is here to avoid failures when updating
|
||||
# the develop version, due to spurious argparse.pyc files remaining
|
||||
# in the libs/spack/external directory, see:
|
||||
# https://github.com/spack/spack/pull/25376
|
||||
# TODO: Remove in v0.18.0 or later
|
||||
try:
|
||||
import argparse
|
||||
except ImportError:
|
||||
argparse_pyc = os.path.join(spack_external_libs, "argparse.pyc")
|
||||
if not os.path.exists(argparse_pyc):
|
||||
raise
|
||||
try:
|
||||
os.remove(argparse_pyc)
|
||||
import argparse # noqa: F401
|
||||
except Exception:
|
||||
msg = (
|
||||
"The file\n\n\t{0}\n\nis corrupted and cannot be deleted by Spack. "
|
||||
"Either delete it manually or ask some administrator to "
|
||||
"delete it for you."
|
||||
)
|
||||
print(msg.format(argparse_pyc))
|
||||
sys.exit(1)
|
||||
|
||||
|
||||
import spack.main # noqa: E402
|
||||
|
||||
# Once we've set up the system path, run the spack main method
|
||||
if __name__ == "__main__":
|
||||
sys.exit(main())
|
||||
sys.exit(spack.main.main())
|
||||
|
@@ -1,6 +1,6 @@
|
||||
#!/bin/sh
|
||||
#
|
||||
# Copyright 2013-2024 Lawrence Livermore National Security, LLC and other
|
||||
# Copyright 2013-2022 Lawrence Livermore National Security, LLC and other
|
||||
# Spack Project Developers. See the top-level COPYRIGHT file for details.
|
||||
#
|
||||
# SPDX-License-Identifier: (Apache-2.0 OR MIT)
|
||||
|
@@ -72,7 +72,6 @@ config:
|
||||
root: $TMP_DIR/install
|
||||
misc_cache: $$user_cache_path/cache
|
||||
source_cache: $$user_cache_path/source
|
||||
environments_root: $TMP_DIR/envs
|
||||
EOF
|
||||
cat >"$SPACK_USER_CONFIG_PATH/bootstrap.yaml" <<EOF
|
||||
bootstrap:
|
||||
|
@@ -1,4 +1,4 @@
|
||||
:: Copyright 2013-2024 Lawrence Livermore National Security, LLC and other
|
||||
:: Copyright 2013-2021 Lawrence Livermore National Security, LLC and other
|
||||
:: Spack Project Developers. See the top-level COPYRIGHT file for details.
|
||||
::
|
||||
:: SPDX-License-Identifier: (Apache-2.0 OR MIT)
|
||||
@@ -14,7 +14,7 @@
|
||||
::
|
||||
@echo off
|
||||
|
||||
set spack="%SPACK_ROOT%"\bin\spack
|
||||
set spack=%SPACK_ROOT%\bin\spack
|
||||
|
||||
::#######################################################################
|
||||
:: This is a wrapper around the spack command that forwards calls to
|
||||
@@ -50,48 +50,25 @@ setlocal enabledelayedexpansion
|
||||
:: flags will always start with '-', e.g. --help or -V
|
||||
:: subcommands will never start with '-'
|
||||
:: everything after the subcommand is an arg
|
||||
|
||||
|
||||
:process_cl_args
|
||||
rem Set first cl argument (denoted by %1) to be processed
|
||||
set t=%1
|
||||
rem shift moves all cl positional arguments left by one
|
||||
rem meaning %2 is now %1, this allows us to iterate over each
|
||||
rem argument
|
||||
shift
|
||||
rem assign next "first" cl argument to cl_args, will be null when
|
||||
rem there are now further arguments to process
|
||||
set cl_args=%1
|
||||
if "!t:~0,1!" == "-" (
|
||||
if defined _sp_subcommand (
|
||||
rem We already have a subcommand, processing args now
|
||||
if not defined _sp_args (
|
||||
set "_sp_args=!t!"
|
||||
) else (
|
||||
for %%x in (%*) do (
|
||||
set t="%%~x"
|
||||
if "!t:~0,1!" == "-" (
|
||||
if defined _sp_subcommand (
|
||||
:: We already have a subcommand, processing args now
|
||||
set "_sp_args=!_sp_args! !t!"
|
||||
)
|
||||
) else (
|
||||
if not defined _sp_flags (
|
||||
set "_sp_flags=!t!"
|
||||
) else (
|
||||
set "_sp_flags=!_sp_flags! !t!"
|
||||
shift
|
||||
)
|
||||
)
|
||||
) else if not defined _sp_subcommand (
|
||||
set "_sp_subcommand=!t!"
|
||||
) else (
|
||||
if not defined _sp_args (
|
||||
set "_sp_args=!t!"
|
||||
) else if not defined _sp_subcommand (
|
||||
set "_sp_subcommand=!t!"
|
||||
shift
|
||||
) else (
|
||||
set "_sp_args=!_sp_args! !t!"
|
||||
shift
|
||||
)
|
||||
)
|
||||
|
||||
rem if this is not nu;ll, we have more tokens to process
|
||||
rem start above process again with remaining unprocessed cl args
|
||||
if defined cl_args goto :process_cl_args
|
||||
|
||||
|
||||
:: --help, -h and -V flags don't require further output parsing.
|
||||
:: If we encounter, execute and exit
|
||||
if defined _sp_flags (
|
||||
@@ -106,24 +83,24 @@ if defined _sp_flags (
|
||||
exit /B 0
|
||||
)
|
||||
)
|
||||
if not defined _sp_subcommand (
|
||||
if not defined _sp_args (
|
||||
if not defined _sp_flags (
|
||||
python "%spack%" --help
|
||||
exit /B 0
|
||||
)
|
||||
)
|
||||
)
|
||||
|
||||
|
||||
:: pass parsed variables outside of local scope. Need to do
|
||||
:: this because delayedexpansion can only be set by setlocal
|
||||
endlocal & (
|
||||
set "_sp_flags=%_sp_flags%"
|
||||
set "_sp_args=%_sp_args%"
|
||||
set "_sp_subcommand=%_sp_subcommand%"
|
||||
)
|
||||
|
||||
echo %_sp_flags%>flags
|
||||
echo %_sp_args%>args
|
||||
echo %_sp_subcommand%>subcmd
|
||||
endlocal
|
||||
set /p _sp_subcommand=<subcmd
|
||||
set /p _sp_flags=<flags
|
||||
set /p _sp_args=<args
|
||||
set str_subcommand=%_sp_subcommand:"='%
|
||||
set str_flags=%_sp_flags:"='%
|
||||
set str_args=%_sp_args:"='%
|
||||
if "%str_subcommand%"=="ECHO is off." (set "_sp_subcommand=")
|
||||
if "%str_flags%"=="ECHO is off." (set "_sp_flags=")
|
||||
if "%str_args%"=="ECHO is off." (set "_sp_args=")
|
||||
del subcmd
|
||||
del flags
|
||||
del args
|
||||
|
||||
:: Filter out some commands. For any others, just run the command.
|
||||
if "%_sp_subcommand%" == "cd" (
|
||||
@@ -166,9 +143,7 @@ goto :end_switch
|
||||
:: If no args or args contain --bat or -h/--help: just execute.
|
||||
if NOT defined _sp_args (
|
||||
goto :default_case
|
||||
)
|
||||
|
||||
if NOT "%_sp_args%"=="%_sp_args:--help=%" (
|
||||
)else if NOT "%_sp_args%"=="%_sp_args:--help=%" (
|
||||
goto :default_case
|
||||
) else if NOT "%_sp_args%"=="%_sp_args: -h=%" (
|
||||
goto :default_case
|
||||
@@ -176,11 +151,11 @@ if NOT "%_sp_args%"=="%_sp_args:--help=%" (
|
||||
goto :default_case
|
||||
) else if NOT "%_sp_args%"=="%_sp_args:deactivate=%" (
|
||||
for /f "tokens=* USEBACKQ" %%I in (
|
||||
`call python %spack% %_sp_flags% env deactivate --bat %_sp_args:deactivate=%`
|
||||
`call python "%spack%" %_sp_flags% env deactivate --bat %_sp_args:deactivate=%`
|
||||
) do %%I
|
||||
) else if NOT "%_sp_args%"=="%_sp_args:activate=%" (
|
||||
for /f "tokens=* USEBACKQ" %%I in (
|
||||
`python %spack% %_sp_flags% env activate --bat %_sp_args:activate=%`
|
||||
`call python "%spack%" %_sp_flags% env activate --bat %_sp_args:activate=%`
|
||||
) do %%I
|
||||
) else (
|
||||
goto :default_case
|
||||
@@ -192,7 +167,7 @@ goto :end_switch
|
||||
if defined _sp_args (
|
||||
if NOT "%_sp_args%"=="%_sp_args:--help=%" (
|
||||
goto :default_case
|
||||
) else if NOT "%_sp_args%"=="%_sp_args:-h=%" (
|
||||
) else if NOT "%_sp_args%"=="%_sp_args: -h=%" (
|
||||
goto :default_case
|
||||
) else if NOT "%_sp_args%"=="%_sp_args:--bat=%" (
|
||||
goto :default_case
|
||||
@@ -201,7 +176,7 @@ if defined _sp_args (
|
||||
|
||||
for /f "tokens=* USEBACKQ" %%I in (
|
||||
`python "%spack%" %_sp_flags% %_sp_subcommand% --bat %_sp_args%`) do %%I
|
||||
|
||||
)
|
||||
goto :end_switch
|
||||
|
||||
:case_unload
|
||||
@@ -239,10 +214,10 @@ for %%Z in ("%_pa_new_path%") do if EXIST %%~sZ\NUL (
|
||||
exit /b 0
|
||||
|
||||
:: set module system roots
|
||||
:_sp_multi_pathadd
|
||||
:_sp_multi_pathadd
|
||||
for %%I in (%~2) do (
|
||||
for %%Z in (%_sp_compatible_sys_types%) do (
|
||||
:pathadd "%~1" "%%I\%%Z"
|
||||
)
|
||||
)
|
||||
exit /B %ERRORLEVEL%
|
||||
exit /B %ERRORLEVEL%
|
148
bin/spack.ps1
148
bin/spack.ps1
@@ -1,148 +0,0 @@
|
||||
# Copyright 2013-2024 Lawrence Livermore National Security, LLC and other
|
||||
# Spack Project Developers. See the top-level COPYRIGHT file for details.
|
||||
|
||||
# SPDX-License-Identifier: (Apache-2.0 OR MIT)
|
||||
# #######################################################################
|
||||
|
||||
function Compare-CommonArgs {
|
||||
$CMDArgs = $args[0]
|
||||
# These aruments take precedence and call for no futher parsing of arguments
|
||||
# invoke actual Spack entrypoint with that context and exit after
|
||||
"--help", "-h", "--version", "-V" | ForEach-Object {
|
||||
$arg_opt = $_
|
||||
if(($CMDArgs) -and ([bool]($CMDArgs.Where({$_ -eq $arg_opt})))) {
|
||||
return $true
|
||||
}
|
||||
}
|
||||
return $false
|
||||
}
|
||||
|
||||
function Read-SpackArgs {
|
||||
$SpackCMD_params = @()
|
||||
$SpackSubCommand = $NULL
|
||||
$SpackSubCommandArgs = @()
|
||||
$args_ = $args[0]
|
||||
$args_ | ForEach-Object {
|
||||
if (!$SpackSubCommand) {
|
||||
if($_.SubString(0,1) -eq "-")
|
||||
{
|
||||
$SpackCMD_params += $_
|
||||
}
|
||||
else{
|
||||
$SpackSubCommand = $_
|
||||
}
|
||||
}
|
||||
else{
|
||||
$SpackSubCommandArgs += $_
|
||||
}
|
||||
}
|
||||
return $SpackCMD_params, $SpackSubCommand, $SpackSubCommandArgs
|
||||
}
|
||||
|
||||
function Set-SpackEnv {
|
||||
# This method is responsible
|
||||
# for processing the return from $(spack <command>)
|
||||
# which are returned as System.Object[]'s containing
|
||||
# a list of env commands
|
||||
# Invoke-Expression can only handle one command at a time
|
||||
# so we iterate over the list to invoke the env modification
|
||||
# expressions one at a time
|
||||
foreach($envop in $args[0]){
|
||||
Invoke-Expression $envop
|
||||
}
|
||||
}
|
||||
|
||||
|
||||
function Invoke-SpackCD {
|
||||
if (Compare-CommonArgs $SpackSubCommandArgs) {
|
||||
python "$Env:SPACK_ROOT/bin/spack" cd -h
|
||||
}
|
||||
else {
|
||||
$LOC = $(python "$Env:SPACK_ROOT/bin/spack" location $SpackSubCommandArgs)
|
||||
if (($NULL -ne $LOC)){
|
||||
if ( Test-Path -Path $LOC){
|
||||
Set-Location $LOC
|
||||
}
|
||||
else{
|
||||
exit 1
|
||||
}
|
||||
}
|
||||
else {
|
||||
exit 1
|
||||
}
|
||||
}
|
||||
}
|
||||
|
||||
function Invoke-SpackEnv {
|
||||
if (Compare-CommonArgs $SpackSubCommandArgs[0]) {
|
||||
python "$Env:SPACK_ROOT/bin/spack" env -h
|
||||
}
|
||||
else {
|
||||
$SubCommandSubCommand = $SpackSubCommandArgs[0]
|
||||
$SubCommandSubCommandArgs = $SpackSubCommandArgs[1..$SpackSubCommandArgs.Count]
|
||||
switch ($SubCommandSubCommand) {
|
||||
"activate" {
|
||||
if (Compare-CommonArgs $SubCommandSubCommandArgs) {
|
||||
python "$Env:SPACK_ROOT/bin/spack" env activate $SubCommandSubCommandArgs
|
||||
}
|
||||
elseif ([bool]($SubCommandSubCommandArgs.Where({$_ -eq "--pwsh"}))) {
|
||||
python "$Env:SPACK_ROOT/bin/spack" env activate $SubCommandSubCommandArgs
|
||||
}
|
||||
elseif (!$SubCommandSubCommandArgs) {
|
||||
python "$Env:SPACK_ROOT/bin/spack" env activate $SubCommandSubCommandArgs
|
||||
}
|
||||
else {
|
||||
$SpackEnv = $(python "$Env:SPACK_ROOT/bin/spack" $SpackCMD_params env activate "--pwsh" $SubCommandSubCommandArgs)
|
||||
Set-SpackEnv $SpackEnv
|
||||
}
|
||||
}
|
||||
"deactivate" {
|
||||
if ([bool]($SubCommandSubCommandArgs.Where({$_ -eq "--pwsh"}))) {
|
||||
python"$Env:SPACK_ROOT/bin/spack" env deactivate $SubCommandSubCommandArgs
|
||||
}
|
||||
elseif($SubCommandSubCommandArgs) {
|
||||
python "$Env:SPACK_ROOT/bin/spack" env deactivate -h
|
||||
}
|
||||
else {
|
||||
$SpackEnv = $(python "$Env:SPACK_ROOT/bin/spack" $SpackCMD_params env deactivate "--pwsh")
|
||||
Set-SpackEnv $SpackEnv
|
||||
}
|
||||
}
|
||||
default {python "$Env:SPACK_ROOT/bin/spack" $SpackCMD_params $SpackSubCommand $SpackSubCommandArgs}
|
||||
}
|
||||
}
|
||||
}
|
||||
|
||||
function Invoke-SpackLoad {
|
||||
if (Compare-CommonArgs $SpackSubCommandArgs) {
|
||||
python "$Env:SPACK_ROOT/bin/spack" $SpackCMD_params $SpackSubCommand $SpackSubCommandArgs
|
||||
}
|
||||
elseif ([bool]($SpackSubCommandArgs.Where({($_ -eq "--pwsh") -or ($_ -eq "--list")}))) {
|
||||
python "$Env:SPACK_ROOT/bin/spack" $SpackCMD_params $SpackSubCommand $SpackSubCommandArgs
|
||||
}
|
||||
else {
|
||||
$SpackEnv = $(python "$Env:SPACK_ROOT/bin/spack" $SpackCMD_params $SpackSubCommand "--pwsh" $SpackSubCommandArgs)
|
||||
Set-SpackEnv $SpackEnv
|
||||
}
|
||||
}
|
||||
|
||||
|
||||
$SpackCMD_params, $SpackSubCommand, $SpackSubCommandArgs = Read-SpackArgs $args
|
||||
|
||||
if (Compare-CommonArgs $SpackCMD_params) {
|
||||
python "$Env:SPACK_ROOT/bin/spack" $SpackCMD_params $SpackSubCommand $SpackSubCommandArgs
|
||||
exit $LASTEXITCODE
|
||||
}
|
||||
|
||||
# Process Spack commands with special conditions
|
||||
# all other commands are piped directly to Spack
|
||||
switch($SpackSubCommand)
|
||||
{
|
||||
"cd" {Invoke-SpackCD}
|
||||
"env" {Invoke-SpackEnv}
|
||||
"load" {Invoke-SpackLoad}
|
||||
"unload" {Invoke-SpackLoad}
|
||||
default {python "$Env:SPACK_ROOT/bin/spack" $SpackCMD_params $SpackSubCommand $SpackSubCommandArgs}
|
||||
}
|
||||
|
||||
exit $LASTEXITCODE
|
@@ -52,6 +52,7 @@ if defined py_path (
|
||||
|
||||
if defined py_exe (
|
||||
"%py_exe%" "%SPACK_ROOT%\bin\haspywin.py"
|
||||
"%py_exe%" "%SPACK_ROOT%\bin\spack" external find python >NUL
|
||||
)
|
||||
|
||||
set "EDITOR=notepad"
|
||||
|
@@ -1,4 +1,4 @@
|
||||
# Copyright 2013-2024 Lawrence Livermore National Security, LLC and other
|
||||
# Copyright 2013-2022 Lawrence Livermore National Security, LLC and other
|
||||
# Spack Project Developers. See the top-level COPYRIGHT file for details.
|
||||
#
|
||||
# SPDX-License-Identifier: (Apache-2.0 OR MIT)
|
||||
|
@@ -9,15 +9,16 @@ bootstrap:
|
||||
# may not be able to bootstrap all the software that Spack needs,
|
||||
# depending on its type.
|
||||
sources:
|
||||
- name: 'github-actions-v0.5'
|
||||
metadata: $spack/share/spack/bootstrap/github-actions-v0.5
|
||||
- name: 'github-actions-v0.4'
|
||||
metadata: $spack/share/spack/bootstrap/github-actions-v0.4
|
||||
- name: 'github-actions-v0.3'
|
||||
metadata: $spack/share/spack/bootstrap/github-actions-v0.3
|
||||
- name: 'github-actions-v0.2'
|
||||
metadata: $spack/share/spack/bootstrap/github-actions-v0.2
|
||||
- name: 'github-actions-v0.1'
|
||||
metadata: $spack/share/spack/bootstrap/github-actions-v0.1
|
||||
- name: 'spack-install'
|
||||
metadata: $spack/share/spack/bootstrap/spack-install
|
||||
trusted:
|
||||
# By default we trust bootstrapping from sources and from binaries
|
||||
# produced on Github via the workflow
|
||||
github-actions-v0.5: true
|
||||
github-actions-v0.4: true
|
||||
github-actions-v0.3: true
|
||||
spack-install: true
|
||||
|
@@ -13,18 +13,16 @@ concretizer:
|
||||
# Whether to consider installed packages or packages from buildcaches when
|
||||
# concretizing specs. If `true`, we'll try to use as many installs/binaries
|
||||
# as possible, rather than building. If `false`, we'll always give you a fresh
|
||||
# concretization. If `dependencies`, we'll only reuse dependencies but
|
||||
# give you a fresh concretization for your root specs.
|
||||
# concretization.
|
||||
reuse: true
|
||||
# Options that tune which targets are considered for concretization. The
|
||||
# concretization process is very sensitive to the number targets, and the time
|
||||
# needed to reach a solution increases noticeably with the number of targets
|
||||
# considered.
|
||||
targets:
|
||||
# Determine whether we want to target specific or generic
|
||||
# microarchitectures. Valid values are: "microarchitectures" or "generic".
|
||||
# An example of "microarchitectures" would be "skylake" or "bulldozer",
|
||||
# while an example of "generic" would be "aarch64" or "x86_64_v4".
|
||||
# Determine whether we want to target specific or generic microarchitectures.
|
||||
# An example of the first kind might be for instance "skylake" or "bulldozer",
|
||||
# while generic microarchitectures are for instance "aarch64" or "x86_64_v4".
|
||||
granularity: microarchitectures
|
||||
# If "false" allow targets that are incompatible with the current host (for
|
||||
# instance concretize with target "icelake" while running on "haswell").
|
||||
@@ -35,15 +33,4 @@ concretizer:
|
||||
# environments can always be activated. When "false" perform concretization separately
|
||||
# on each root spec, allowing different versions and variants of the same package in
|
||||
# an environment.
|
||||
unify: true
|
||||
# Option to deal with possible duplicate nodes (i.e. different nodes from the same package) in the DAG.
|
||||
duplicates:
|
||||
# "none": allows a single node for any package in the DAG.
|
||||
# "minimal": allows the duplication of 'build-tools' nodes only (e.g. py-setuptools, cmake etc.)
|
||||
# "full" (experimental): allows separation of the entire build-tool stack (e.g. the entire "cmake" subDAG)
|
||||
strategy: minimal
|
||||
# Option to specify compatiblity between operating systems for reuse of compilers and packages
|
||||
# Specified as a key: [list] where the key is the os that is being targeted, and the list contains the OS's
|
||||
# it can reuse. Note this is a directional compatibility so mutual compatibility between two OS's
|
||||
# requires two entries i.e. os_compatible: {sonoma: [monterey], monterey: [sonoma]}
|
||||
os_compatible: {}
|
||||
unify: false
|
@@ -19,7 +19,7 @@ config:
|
||||
install_tree:
|
||||
root: $spack/opt/spack
|
||||
projections:
|
||||
all: "{architecture}/{compiler.name}-{compiler.version}/{name}-{version}-{hash}"
|
||||
all: "${ARCHITECTURE}/${COMPILERNAME}-${COMPILERVER}/${PACKAGE}-${VERSION}-${HASH}"
|
||||
# install_tree can include an optional padded length (int or boolean)
|
||||
# default is False (do not pad)
|
||||
# if padded_length is True, Spack will pad as close to the system max path
|
||||
@@ -54,11 +54,6 @@ config:
|
||||
# are that it precludes its use as a system package and its ability to be
|
||||
# pip installable.
|
||||
#
|
||||
# In Spack environment files, chaining onto existing system Spack
|
||||
# installations, the $env variable can be used to download, cache and build
|
||||
# into user-writable paths that are relative to the currently active
|
||||
# environment.
|
||||
#
|
||||
# In any case, if the username is not already in the path, Spack will append
|
||||
# the value of `$user` in an attempt to avoid potential conflicts between
|
||||
# users in shared temporary spaces.
|
||||
@@ -81,10 +76,6 @@ config:
|
||||
source_cache: $spack/var/spack/cache
|
||||
|
||||
|
||||
## Directory where spack managed environments are created and stored
|
||||
# environments_root: $spack/var/spack/environments
|
||||
|
||||
|
||||
# Cache directory for miscellaneous files, like the package index.
|
||||
# This can be purged with `spack clean --misc-cache`
|
||||
misc_cache: $user_cache_path/cache
|
||||
@@ -101,12 +92,6 @@ config:
|
||||
verify_ssl: true
|
||||
|
||||
|
||||
# This is where custom certs for proxy/firewall are stored.
|
||||
# It can be a path or environment variable. To match ssl env configuration
|
||||
# the default is the environment variable SSL_CERT_FILE
|
||||
ssl_certs: $SSL_CERT_FILE
|
||||
|
||||
|
||||
# Suppress gpg warnings from binary package verification
|
||||
# Only suppresses warnings, gpg failure will still fail the install
|
||||
# Potential rationale to set True: users have already explicitly trusted the
|
||||
@@ -191,7 +176,7 @@ config:
|
||||
# when Spack needs to manage its own package metadata and all operations are
|
||||
# expected to complete within the default time limit. The timeout should
|
||||
# therefore generally be left untouched.
|
||||
db_lock_timeout: 60
|
||||
db_lock_timeout: 3
|
||||
|
||||
|
||||
# How long to wait when attempting to modify a package (e.g. to install it).
|
||||
@@ -202,44 +187,17 @@ config:
|
||||
package_lock_timeout: null
|
||||
|
||||
|
||||
# Control how shared libraries are located at runtime on Linux. See the
|
||||
# the Spack documentation for details.
|
||||
shared_linking:
|
||||
# Spack automatically embeds runtime search paths in ELF binaries for their
|
||||
# dependencies. Their type can either be "rpath" or "runpath". For glibc, rpath is
|
||||
# inherited and has precedence over LD_LIBRARY_PATH; runpath is not inherited
|
||||
# and of lower precedence. DO NOT MIX these within the same install tree.
|
||||
type: rpath
|
||||
|
||||
|
||||
# (Experimental) Embed absolute paths of dependent libraries directly in ELF
|
||||
# binaries to avoid runtime search. This can improve startup time of
|
||||
# executables with many dependencies, in particular on slow filesystems.
|
||||
bind: false
|
||||
# Control whether Spack embeds RPATH or RUNPATH attributes in ELF binaries.
|
||||
# Has no effect on macOS. DO NOT MIX these within the same install tree.
|
||||
# See the Spack documentation for details.
|
||||
shared_linking: 'rpath'
|
||||
|
||||
|
||||
# Set to 'false' to allow installation on filesystems that doesn't allow setgid bit
|
||||
# manipulation by unprivileged user (e.g. AFS)
|
||||
allow_sgid: true
|
||||
|
||||
# Whether to show status information during building and installing packages.
|
||||
# This gives information about Spack's current progress as well as the current
|
||||
# and total number of packages. Information is shown both in the terminal
|
||||
# title and inline.
|
||||
install_status: true
|
||||
|
||||
# Number of seconds a buildcache's index.json is cached locally before probing
|
||||
# for updates, within a single Spack invocation. Defaults to 10 minutes.
|
||||
binary_index_ttl: 600
|
||||
|
||||
flags:
|
||||
# Whether to keep -Werror flags active in package builds.
|
||||
keep_werror: 'none'
|
||||
|
||||
# A mapping of aliases that can be used to define new commands. For instance,
|
||||
# `sp: spec -I` will define a new command `sp` that will execute `spec` with
|
||||
# the `-I` argument. Aliases cannot override existing commands.
|
||||
aliases:
|
||||
concretise: concretize
|
||||
containerise: containerize
|
||||
rm: remove
|
||||
# Whether to set the terminal title to display status information during
|
||||
# building and installing packages. This gives information about Spack's
|
||||
# current progress as well as the current and total number of packages.
|
||||
terminal_title: false
|
||||
|
@@ -1,19 +0,0 @@
|
||||
# -------------------------------------------------------------------------
|
||||
# This file controls default concretization preferences for Spack.
|
||||
#
|
||||
# Settings here are versioned with Spack and are intended to provide
|
||||
# sensible defaults out of the box. Spack maintainers should edit this
|
||||
# file to keep it current.
|
||||
#
|
||||
# Users can override these settings by editing the following files.
|
||||
#
|
||||
# Per-spack-instance settings (overrides defaults):
|
||||
# $SPACK_ROOT/etc/spack/packages.yaml
|
||||
#
|
||||
# Per-user settings (overrides default and site settings):
|
||||
# ~/.spack/packages.yaml
|
||||
# -------------------------------------------------------------------------
|
||||
packages:
|
||||
all:
|
||||
providers:
|
||||
iconv: [glibc, musl, libiconv]
|
@@ -19,23 +19,12 @@ packages:
|
||||
- apple-clang
|
||||
- clang
|
||||
- gcc
|
||||
- intel
|
||||
providers:
|
||||
elf: [libelf]
|
||||
fuse: [macfuse]
|
||||
gl: [apple-gl]
|
||||
glu: [apple-glu]
|
||||
unwind: [apple-libunwind]
|
||||
uuid: [apple-libuuid]
|
||||
apple-gl:
|
||||
buildable: false
|
||||
externals:
|
||||
- spec: apple-gl@4.1.0
|
||||
prefix: /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk
|
||||
apple-glu:
|
||||
buildable: false
|
||||
externals:
|
||||
- spec: apple-glu@1.3.0
|
||||
prefix: /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk
|
||||
apple-libunwind:
|
||||
buildable: false
|
||||
externals:
|
||||
@@ -49,4 +38,4 @@ packages:
|
||||
# Apple bundles libuuid in libsystem_c version 1353.100.2,
|
||||
# although the version number used here isn't critical
|
||||
- spec: apple-libuuid@1353.100.2
|
||||
prefix: /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk
|
||||
prefix: /Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX.sdk
|
||||
|
@@ -1,19 +0,0 @@
|
||||
# -------------------------------------------------------------------------
|
||||
# This file controls default concretization preferences for Spack.
|
||||
#
|
||||
# Settings here are versioned with Spack and are intended to provide
|
||||
# sensible defaults out of the box. Spack maintainers should edit this
|
||||
# file to keep it current.
|
||||
#
|
||||
# Users can override these settings by editing the following files.
|
||||
#
|
||||
# Per-spack-instance settings (overrides defaults):
|
||||
# $SPACK_ROOT/etc/spack/packages.yaml
|
||||
#
|
||||
# Per-user settings (overrides default and site settings):
|
||||
# ~/.spack/packages.yaml
|
||||
# -------------------------------------------------------------------------
|
||||
packages:
|
||||
all:
|
||||
providers:
|
||||
iconv: [glibc, musl, libiconv]
|
@@ -1,4 +1,2 @@
|
||||
mirrors:
|
||||
spack-public:
|
||||
binary: false
|
||||
url: https://mirror.spack.io
|
||||
spack-public: https://mirror.spack.io
|
||||
|
@@ -40,12 +40,13 @@ modules:
|
||||
roots:
|
||||
tcl: $spack/share/spack/modules
|
||||
lmod: $spack/share/spack/lmod
|
||||
# What type of modules to use ("tcl" and/or "lmod")
|
||||
enable: []
|
||||
# What type of modules to use
|
||||
enable:
|
||||
- tcl
|
||||
|
||||
tcl:
|
||||
all:
|
||||
autoload: direct
|
||||
autoload: none
|
||||
|
||||
# Default configurations if lmod is enabled
|
||||
lmod:
|
||||
|
@@ -15,36 +15,31 @@
|
||||
# -------------------------------------------------------------------------
|
||||
packages:
|
||||
all:
|
||||
compiler: [gcc, clang, oneapi, xl, nag, fj, aocc]
|
||||
compiler: [gcc, intel, pgi, clang, xl, nag, fj, aocc]
|
||||
providers:
|
||||
awk: [gawk]
|
||||
armci: [armcimpi]
|
||||
blas: [openblas, amdblis]
|
||||
D: [ldc]
|
||||
daal: [intel-oneapi-daal]
|
||||
daal: [intel-daal]
|
||||
elf: [elfutils]
|
||||
fftw-api: [fftw, amdfftw]
|
||||
flame: [libflame, amdlibflame]
|
||||
fortran-rt: [gcc-runtime, intel-oneapi-runtime]
|
||||
fuse: [libfuse]
|
||||
gl: [glx, osmesa]
|
||||
glu: [mesa-glu, openglu]
|
||||
golang: [go, gcc]
|
||||
go-or-gccgo-bootstrap: [go-bootstrap, gcc]
|
||||
golang: [gcc]
|
||||
iconv: [libiconv]
|
||||
ipp: [intel-oneapi-ipp]
|
||||
ipp: [intel-ipp]
|
||||
java: [openjdk, jdk, ibm-java]
|
||||
jpeg: [libjpeg-turbo, libjpeg]
|
||||
lapack: [openblas, amdlibflame]
|
||||
libc: [glibc, musl]
|
||||
libgfortran: [ gcc-runtime ]
|
||||
libglx: [mesa+glx]
|
||||
libifcore: [ intel-oneapi-runtime ]
|
||||
libglx: [mesa+glx, mesa18+glx]
|
||||
libllvm: [llvm]
|
||||
libosmesa: [mesa+osmesa, mesa18+osmesa]
|
||||
lua-lang: [lua, lua-luajit-openresty, lua-luajit]
|
||||
luajit: [lua-luajit-openresty, lua-luajit]
|
||||
mariadb-client: [mariadb-c-client, mariadb]
|
||||
mkl: [intel-oneapi-mkl]
|
||||
mkl: [intel-mkl]
|
||||
mpe: [mpe2]
|
||||
mpi: [openmpi, mpich]
|
||||
mysql-client: [mysql, mariadb-c-client]
|
||||
@@ -53,7 +48,6 @@ packages:
|
||||
pbs: [openpbs, torque]
|
||||
pil: [py-pillow]
|
||||
pkgconfig: [pkgconf, pkg-config]
|
||||
qmake: [qt-base, qt]
|
||||
rpc: [libtirpc]
|
||||
scalapack: [netlib-scalapack, amdscalapack]
|
||||
sycl: [hipsycl]
|
||||
@@ -64,7 +58,6 @@ packages:
|
||||
xxd: [xxd-standalone, vim]
|
||||
yacc: [bison, byacc]
|
||||
ziglang: [zig]
|
||||
zlib-api: [zlib-ng+compat, zlib]
|
||||
permissions:
|
||||
read: world
|
||||
write: user
|
||||
|
@@ -1,6 +1,5 @@
|
||||
config:
|
||||
locks: false
|
||||
concretizer: clingo
|
||||
concretizer: original
|
||||
build_stage::
|
||||
- '$spack/.staging'
|
||||
stage_name: '{name}-{version}-{hash:7}'
|
||||
|
@@ -1,22 +0,0 @@
|
||||
# -------------------------------------------------------------------------
|
||||
# This file controls default concretization preferences for Spack.
|
||||
#
|
||||
# Settings here are versioned with Spack and are intended to provide
|
||||
# sensible defaults out of the box. Spack maintainers should edit this
|
||||
# file to keep it current.
|
||||
#
|
||||
# Users can override these settings by editing the following files.
|
||||
#
|
||||
# Per-spack-instance settings (overrides defaults):
|
||||
# $SPACK_ROOT/etc/spack/packages.yaml
|
||||
#
|
||||
# Per-user settings (overrides default and site settings):
|
||||
# ~/.spack/packages.yaml
|
||||
# -------------------------------------------------------------------------
|
||||
packages:
|
||||
all:
|
||||
compiler:
|
||||
- msvc
|
||||
providers:
|
||||
mpi: [msmpi]
|
||||
gl: [wgl]
|
2
lib/spack/docs/.gitignore
vendored
2
lib/spack/docs/.gitignore
vendored
@@ -1,7 +1,7 @@
|
||||
package_list.html
|
||||
command_index.rst
|
||||
spack*.rst
|
||||
llnl*.rst
|
||||
_build
|
||||
.spack-env
|
||||
spack.lock
|
||||
_spack_root
|
||||
|
@@ -1,16 +0,0 @@
|
||||
# Copyright 2013-2024 Lawrence Livermore National Security, LLC and other
|
||||
# Spack Project Developers. See the top-level COPYRIGHT file for details.
|
||||
#
|
||||
# SPDX-License-Identifier: (Apache-2.0 OR MIT)
|
||||
|
||||
# The name of the Pygments (syntax highlighting) style to use.
|
||||
# We use our own extension of the default style with a few modifications
|
||||
from pygments.styles.default import DefaultStyle
|
||||
from pygments.token import Generic
|
||||
|
||||
|
||||
class SpackStyle(DefaultStyle):
|
||||
styles = DefaultStyle.styles.copy()
|
||||
background_color = "#f4f4f8"
|
||||
styles[Generic.Output] = "#355"
|
||||
styles[Generic.Prompt] = "bold #346ec9"
|
1
lib/spack/docs/_spack_root
Symbolic link
1
lib/spack/docs/_spack_root
Symbolic link
@@ -0,0 +1 @@
|
||||
../../..
|
12
lib/spack/docs/_templates/layout.html
vendored
12
lib/spack/docs/_templates/layout.html
vendored
@@ -1,12 +0,0 @@
|
||||
{% extends "!layout.html" %}
|
||||
|
||||
{%- block extrahead %}
|
||||
<!-- Google tag (gtag.js) -->
|
||||
<script async src="https://www.googletagmanager.com/gtag/js?id=G-S0PQ7WV75K"></script>
|
||||
<script>
|
||||
window.dataLayer = window.dataLayer || [];
|
||||
function gtag(){dataLayer.push(arguments);}
|
||||
gtag('js', new Date());
|
||||
gtag('config', 'G-S0PQ7WV75K');
|
||||
</script>
|
||||
{% endblock %}
|
162
lib/spack/docs/analyze.rst
Normal file
162
lib/spack/docs/analyze.rst
Normal file
@@ -0,0 +1,162 @@
|
||||
.. Copyright 2013-2022 Lawrence Livermore National Security, LLC and other
|
||||
Spack Project Developers. See the top-level COPYRIGHT file for details.
|
||||
|
||||
SPDX-License-Identifier: (Apache-2.0 OR MIT)
|
||||
|
||||
.. _analyze:
|
||||
|
||||
=======
|
||||
Analyze
|
||||
=======
|
||||
|
||||
|
||||
The analyze command is a front-end to various tools that let us analyze
|
||||
package installations. Each analyzer is a module for a different kind
|
||||
of analysis that can be done on a package installation, including (but not
|
||||
limited to) binary, log, or text analysis. Thus, the analyze command group
|
||||
allows you to take an existing package install, choose an analyzer,
|
||||
and extract some output for the package using it.
|
||||
|
||||
|
||||
-----------------
|
||||
Analyzer Metadata
|
||||
-----------------
|
||||
|
||||
For all analyzers, we write to an ``analyzers`` folder in ``~/.spack``, or the
|
||||
value that you specify in your spack config at ``config:analyzers_dir``.
|
||||
For example, here we see the results of running an analysis on zlib:
|
||||
|
||||
.. code-block:: console
|
||||
|
||||
$ tree ~/.spack/analyzers/
|
||||
└── linux-ubuntu20.04-skylake
|
||||
└── gcc-9.3.0
|
||||
└── zlib-1.2.11-sl7m27mzkbejtkrajigj3a3m37ygv4u2
|
||||
├── environment_variables
|
||||
│ └── spack-analyzer-environment-variables.json
|
||||
├── install_files
|
||||
│ └── spack-analyzer-install-files.json
|
||||
└── libabigail
|
||||
└── spack-analyzer-libabigail-libz.so.1.2.11.xml
|
||||
|
||||
|
||||
This means that you can always find analyzer output in this folder, and it
|
||||
is organized with the same logic as the package install it was run for.
|
||||
If you want to customize this top level folder, simply provide the ``--path``
|
||||
argument to ``spack analyze run``. The nested organization will be maintained
|
||||
within your custom root.
|
||||
|
||||
-----------------
|
||||
Listing Analyzers
|
||||
-----------------
|
||||
|
||||
If you aren't familiar with Spack's analyzers, you can quickly list those that
|
||||
are available:
|
||||
|
||||
.. code-block:: console
|
||||
|
||||
$ spack analyze list-analyzers
|
||||
install_files : install file listing read from install_manifest.json
|
||||
environment_variables : environment variables parsed from spack-build-env.txt
|
||||
config_args : config args loaded from spack-configure-args.txt
|
||||
libabigail : Application Binary Interface (ABI) features for objects
|
||||
|
||||
|
||||
In the above, the first three are fairly simple - parsing metadata files from
|
||||
a package install directory to save
|
||||
|
||||
-------------------
|
||||
Analyzing a Package
|
||||
-------------------
|
||||
|
||||
The analyze command, akin to install, will accept a package spec to perform
|
||||
an analysis for. The package must be installed. Let's walk through an example
|
||||
with zlib. We first ask to analyze it. However, since we have more than one
|
||||
install, we are asked to disambiguate:
|
||||
|
||||
.. code-block:: console
|
||||
|
||||
$ spack analyze run zlib
|
||||
==> Error: zlib matches multiple packages.
|
||||
Matching packages:
|
||||
fz2bs56 zlib@1.2.11%gcc@7.5.0 arch=linux-ubuntu18.04-skylake
|
||||
sl7m27m zlib@1.2.11%gcc@9.3.0 arch=linux-ubuntu20.04-skylake
|
||||
Use a more specific spec.
|
||||
|
||||
|
||||
We can then specify the spec version that we want to analyze:
|
||||
|
||||
.. code-block:: console
|
||||
|
||||
$ spack analyze run zlib/fz2bs56
|
||||
|
||||
If you don't provide any specific analyzer names, by default all analyzers
|
||||
(shown in the ``list-analyzers`` subcommand list) will be run. If an analyzer does not
|
||||
have any result, it will be skipped. For example, here is a result running for
|
||||
zlib:
|
||||
|
||||
.. code-block:: console
|
||||
|
||||
$ ls ~/.spack/analyzers/linux-ubuntu20.04-skylake/gcc-9.3.0/zlib-1.2.11-sl7m27mzkbejtkrajigj3a3m37ygv4u2/
|
||||
spack-analyzer-environment-variables.json
|
||||
spack-analyzer-install-files.json
|
||||
spack-analyzer-libabigail-libz.so.1.2.11.xml
|
||||
|
||||
If you want to run a specific analyzer, ask for it with `--analyzer`. Here we run
|
||||
spack analyze on libabigail (already installed) _using_ libabigail1
|
||||
|
||||
.. code-block:: console
|
||||
|
||||
$ spack analyze run --analyzer abigail libabigail
|
||||
|
||||
|
||||
.. _analyze_monitoring:
|
||||
|
||||
----------------------
|
||||
Monitoring An Analysis
|
||||
----------------------
|
||||
|
||||
For any kind of analysis, you can
|
||||
use a `spack monitor <https://github.com/spack/spack-monitor>`_ "Spackmon"
|
||||
as a server to upload the same run metadata to. You can
|
||||
follow the instructions in the `spack monitor documentation <https://spack-monitor.readthedocs.org>`_
|
||||
to first create a server along with a username and token for yourself.
|
||||
You can then use this guide to interact with the server.
|
||||
|
||||
You should first export our spack monitor token and username to the environment:
|
||||
|
||||
.. code-block:: console
|
||||
|
||||
$ export SPACKMON_TOKEN=50445263afd8f67e59bd79bff597836ee6c05438
|
||||
$ export SPACKMON_USER=spacky
|
||||
|
||||
|
||||
By default, the host for your server is expected to be at ``http://127.0.0.1``
|
||||
with a prefix of ``ms1``, and if this is the case, you can simply add the
|
||||
``--monitor`` flag to the install command:
|
||||
|
||||
.. code-block:: console
|
||||
|
||||
$ spack analyze run --monitor wget
|
||||
|
||||
If you need to customize the host or the prefix, you can do that as well:
|
||||
|
||||
.. code-block:: console
|
||||
|
||||
$ spack analyze run --monitor --monitor-prefix monitor --monitor-host https://monitor-service.io wget
|
||||
|
||||
If your server doesn't have authentication, you can skip it:
|
||||
|
||||
.. code-block:: console
|
||||
|
||||
$ spack analyze run --monitor --monitor-disable-auth wget
|
||||
|
||||
Regardless of your choice, when you run analyze on an installed package (whether
|
||||
it was installed with ``--monitor`` or not, you'll see the results generating as they did
|
||||
before, and a message that the monitor server was pinged:
|
||||
|
||||
.. code-block:: console
|
||||
|
||||
$ spack analyze --monitor wget
|
||||
...
|
||||
==> Sending result for wget bin/wget to monitor.
|
@@ -1,4 +1,4 @@
|
||||
.. Copyright 2013-2024 Lawrence Livermore National Security, LLC and other
|
||||
.. Copyright 2013-2022 Lawrence Livermore National Security, LLC and other
|
||||
Spack Project Developers. See the top-level COPYRIGHT file for details.
|
||||
|
||||
SPDX-License-Identifier: (Apache-2.0 OR MIT)
|
||||
@@ -45,8 +45,7 @@ Listing available packages
|
||||
|
||||
To install software with Spack, you need to know what software is
|
||||
available. You can see a list of available package names at the
|
||||
`packages.spack.io <https://packages.spack.io>`_ website, or
|
||||
using the ``spack list`` command.
|
||||
:ref:`package-list` webpage, or using the ``spack list`` command.
|
||||
|
||||
.. _cmd-spack-list:
|
||||
|
||||
@@ -61,7 +60,7 @@ can install:
|
||||
:ellipsis: 10
|
||||
|
||||
There are thousands of them, so we've truncated the output above, but you
|
||||
can find a `full list here <https://packages.spack.io>`_.
|
||||
can find a :ref:`full list here <package-list>`.
|
||||
Packages are listed by name in alphabetical order.
|
||||
A pattern to match with no wildcards, ``*`` or ``?``,
|
||||
will be treated as though it started and ended with
|
||||
@@ -86,7 +85,7 @@ All packages whose names or descriptions contain documentation:
|
||||
To get more information on a particular package from `spack list`, use
|
||||
`spack info`. Just supply the name of a package:
|
||||
|
||||
.. command-output:: spack info --all mpich
|
||||
.. command-output:: spack info mpich
|
||||
|
||||
Most of the information is self-explanatory. The *safe versions* are
|
||||
versions that Spack knows the checksum for, and it will use the
|
||||
@@ -865,7 +864,7 @@ There are several different ways to use Spack packages once you have
|
||||
installed them. As you've seen, spack packages are installed into long
|
||||
paths with hashes, and you need a way to get them into your path. The
|
||||
easiest way is to use :ref:`spack load <cmd-spack-load>`, which is
|
||||
described in this section.
|
||||
described in the next section.
|
||||
|
||||
Some more advanced ways to use Spack packages include:
|
||||
|
||||
@@ -943,7 +942,7 @@ first ``libelf`` above, you would run:
|
||||
|
||||
$ spack load /qmm4kso
|
||||
|
||||
To see which packages that you have loaded to your environment you would
|
||||
To see which packages that you have loaded to your enviornment you would
|
||||
use ``spack find --loaded``.
|
||||
|
||||
.. code-block:: console
|
||||
@@ -959,86 +958,7 @@ use ``spack find --loaded``.
|
||||
You can also use ``spack load --list`` to get the same output, but it
|
||||
does not have the full set of query options that ``spack find`` offers.
|
||||
|
||||
We'll learn more about Spack's spec syntax in :ref:`a later section <sec-specs>`.
|
||||
|
||||
|
||||
.. _extensions:
|
||||
|
||||
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
|
||||
Python packages and virtual environments
|
||||
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
|
||||
|
||||
Spack can install a large number of Python packages. Their names are
|
||||
typically prefixed with ``py-``. Installing and using them is no
|
||||
different from any other package:
|
||||
|
||||
.. code-block:: console
|
||||
|
||||
$ spack install py-numpy
|
||||
$ spack load py-numpy
|
||||
$ python3
|
||||
>>> import numpy
|
||||
|
||||
The ``spack load`` command sets the ``PATH`` variable so that the right Python
|
||||
executable is used, and makes sure that ``numpy`` and its dependencies can be
|
||||
located in the ``PYTHONPATH``.
|
||||
|
||||
Spack is different from other Python package managers in that it installs
|
||||
every package into its *own* prefix. This is in contrast to ``pip``, which
|
||||
installs all packages into the same prefix, be it in a virtual environment
|
||||
or not.
|
||||
|
||||
For many users, **virtual environments** are more convenient than repeated
|
||||
``spack load`` commands, particularly when working with multiple Python
|
||||
packages. Fortunately Spack supports environments itself, which together
|
||||
with a view are no different from Python virtual environments.
|
||||
|
||||
The recommended way of working with Python extensions such as ``py-numpy``
|
||||
is through :ref:`Environments <environments>`. The following example creates
|
||||
a Spack environment with ``numpy`` in the current working directory. It also
|
||||
puts a filesystem view in ``./view``, which is a more traditional combined
|
||||
prefix for all packages in the environment.
|
||||
|
||||
.. code-block:: console
|
||||
|
||||
$ spack env create --with-view view --dir .
|
||||
$ spack -e . add py-numpy
|
||||
$ spack -e . concretize
|
||||
$ spack -e . install
|
||||
|
||||
Now you can activate the environment and start using the packages:
|
||||
|
||||
.. code-block:: console
|
||||
|
||||
$ spack env activate .
|
||||
$ python3
|
||||
>>> import numpy
|
||||
|
||||
The environment view is also a virtual environment, which is useful if you are
|
||||
sharing the environment with others who are unfamiliar with Spack. They can
|
||||
either use the Python executable directly:
|
||||
|
||||
.. code-block:: console
|
||||
|
||||
$ ./view/bin/python3
|
||||
>>> import numpy
|
||||
|
||||
or use the activation script:
|
||||
|
||||
.. code-block:: console
|
||||
|
||||
$ source ./view/bin/activate
|
||||
$ python3
|
||||
>>> import numpy
|
||||
|
||||
In general, there should not be much difference between ``spack env activate``
|
||||
and using the virtual environment. The main advantage of ``spack env activate``
|
||||
is that it knows about more packages than just Python packages, and it may set
|
||||
additional runtime variables that are not covered by the virtual environment
|
||||
activation script.
|
||||
|
||||
See :ref:`environments` for a more in-depth description of Spack
|
||||
environments and customizations to views.
|
||||
We'll learn more about Spack's spec syntax in the next section.
|
||||
|
||||
|
||||
.. _sec-specs:
|
||||
@@ -1078,15 +998,11 @@ More formally, a spec consists of the following pieces:
|
||||
* ``%`` Optional compiler specifier, with an optional compiler version
|
||||
(``gcc`` or ``gcc@4.7.3``)
|
||||
* ``+`` or ``-`` or ``~`` Optional variant specifiers (``+debug``,
|
||||
``-qt``, or ``~qt``) for boolean variants. Use ``++`` or ``--`` or
|
||||
``~~`` to propagate variants through the dependencies (``++debug``,
|
||||
``--qt``, or ``~~qt``).
|
||||
``-qt``, or ``~qt``) for boolean variants
|
||||
* ``name=<value>`` Optional variant specifiers that are not restricted to
|
||||
boolean variants. Use ``name==<value>`` to propagate variant through the
|
||||
dependencies.
|
||||
boolean variants
|
||||
* ``name=<value>`` Optional compiler flag specifiers. Valid flag names are
|
||||
``cflags``, ``cxxflags``, ``fflags``, ``cppflags``, ``ldflags``, and ``ldlibs``.
|
||||
Use ``name==<value>`` to propagate compiler flags through the dependencies.
|
||||
* ``target=<value> os=<value>`` Optional architecture specifier
|
||||
(``target=haswell os=CNL10``)
|
||||
* ``^`` Dependency specs (``^callpath@1.1``)
|
||||
@@ -1183,75 +1099,54 @@ Below are more details about the specifiers that you can add to specs.
|
||||
Version specifier
|
||||
^^^^^^^^^^^^^^^^^
|
||||
|
||||
A version specifier ``pkg@<specifier>`` comes after a package name
|
||||
and starts with ``@``. It can be something abstract that matches
|
||||
multiple known versions, or a specific version. During concretization,
|
||||
Spack will pick the optimal version within the spec's constraints
|
||||
according to policies set for the particular Spack installation.
|
||||
A version specifier comes somewhere after a package name and starts
|
||||
with ``@``. It can be a single version, e.g. ``@1.0``, ``@3``, or
|
||||
``@1.2a7``. Or, it can be a range of versions, such as ``@1.0:1.5``
|
||||
(all versions between ``1.0`` and ``1.5``, inclusive). Version ranges
|
||||
can be open, e.g. ``:3`` means any version up to and including ``3``.
|
||||
This would include ``3.4`` and ``3.4.2``. ``4.2:`` means any version
|
||||
above and including ``4.2``. Finally, a version specifier can be a
|
||||
set of arbitrary versions, such as ``@1.0,1.5,1.7`` (``1.0``, ``1.5``,
|
||||
or ``1.7``). When you supply such a specifier to ``spack install``,
|
||||
it constrains the set of versions that Spack will install.
|
||||
|
||||
The version specifier can be *a specific version*, such as ``@=1.0.0`` or
|
||||
``@=1.2a7``. Or, it can be *a range of versions*, such as ``@1.0:1.5``.
|
||||
Version ranges are inclusive, so this example includes both ``1.0``
|
||||
and any ``1.5.x`` version. Version ranges can be unbounded, e.g. ``@:3``
|
||||
means any version up to and including ``3``. This would include ``3.4``
|
||||
and ``3.4.2``. Similarly, ``@4.2:`` means any version above and including
|
||||
``4.2``. As a short-hand, ``@3`` is equivalent to the range ``@3:3`` and
|
||||
includes any version with major version ``3``.
|
||||
|
||||
Versions are ordered lexicograpically by its components. For more details
|
||||
on the order, see :ref:`the packaging guide <version-comparison>`.
|
||||
|
||||
Notice that you can distinguish between the specific version ``@=3.2`` and
|
||||
the range ``@3.2``. This is useful for packages that follow a versioning
|
||||
scheme that omits the zero patch version number: ``3.2``, ``3.2.1``,
|
||||
``3.2.2``, etc. In general it is preferable to use the range syntax
|
||||
``@3.2``, since ranges also match versions with one-off suffixes, such as
|
||||
``3.2-custom``.
|
||||
|
||||
A version specifier can also be a list of ranges and specific versions,
|
||||
separated by commas. For example, ``@1.0:1.5,=1.7.1`` matches any version
|
||||
in the range ``1.0:1.5`` and the specific version ``1.7.1``.
|
||||
|
||||
^^^^^^^^^^^^
|
||||
Git versions
|
||||
^^^^^^^^^^^^
|
||||
|
||||
For packages with a ``git`` attribute, ``git`` references
|
||||
may be specified instead of a numerical version i.e. branches, tags
|
||||
and commits. Spack will stage and build based off the ``git``
|
||||
For packages with a ``git`` attribute, ``git`` references
|
||||
may be specified instead of a numerical version i.e. branches, tags
|
||||
and commits. Spack will stage and build based off the ``git``
|
||||
reference provided. Acceptable syntaxes for this are:
|
||||
|
||||
.. code-block:: sh
|
||||
|
||||
# commit hashes
|
||||
foo@abcdef1234abcdef1234abcdef1234abcdef1234 # 40 character hashes are automatically treated as git commits
|
||||
foo@git.abcdef1234abcdef1234abcdef1234abcdef1234
|
||||
|
||||
|
||||
# branches and tags
|
||||
foo@git.develop # use the develop branch
|
||||
foo@git.0.19 # use the 0.19 tag
|
||||
|
||||
# commit hashes
|
||||
foo@abcdef1234abcdef1234abcdef1234abcdef1234 # 40 character hashes are automatically treated as git commits
|
||||
foo@git.abcdef1234abcdef1234abcdef1234abcdef1234
|
||||
|
||||
Spack versions from git reference either have an associated version supplied by the user,
|
||||
or infer a relationship to known versions from the structure of the git repository. If an
|
||||
associated version is supplied by the user, Spack treats the git version as equivalent to that
|
||||
version for all version comparisons in the package logic (e.g. ``depends_on('foo', when='@1.5')``).
|
||||
|
||||
Spack always needs to associate a Spack version with the git reference,
|
||||
which is used for version comparison. This Spack version is heuristically
|
||||
taken from the closest valid git tag among ancestors of the git ref.
|
||||
|
||||
Once a Spack version is associated with a git ref, it always printed with
|
||||
the git ref. For example, if the commit ``@git.abcdefg`` is tagged
|
||||
``0.19``, then the spec will be shown as ``@git.abcdefg=0.19``.
|
||||
|
||||
If the git ref is not exactly a tag, then the distance to the nearest tag
|
||||
is also part of the resolved version. ``@git.abcdefg=0.19.git.8`` means
|
||||
that the commit is 8 commits away from the ``0.19`` tag.
|
||||
|
||||
In cases where Spack cannot resolve a sensible version from a git ref,
|
||||
users can specify the Spack version to use for the git ref. This is done
|
||||
by appending ``=`` and the Spack version to the git ref. For example:
|
||||
The associated version can be assigned with ``[git ref]=[version]`` syntax, with the caveat that the specified version is known to Spack from either the package definition, or in the configuration preferences (i.e. ``packages.yaml``).
|
||||
|
||||
.. code-block:: sh
|
||||
|
||||
foo@git.my_ref=3.2 # use the my_ref tag or branch, but treat it as version 3.2 for version comparisons
|
||||
foo@git.abcdef1234abcdef1234abcdef1234abcdef1234=develop # use the given commit, but treat it as develop for version comparisons
|
||||
|
||||
If an associated version is not supplied then the tags in the git repo are used to determine
|
||||
the most recent previous version known to Spack. Details about how versions are compared
|
||||
and how Spack determines if one version is less than another are discussed in the developer guide.
|
||||
|
||||
If the version spec is not provided, then Spack will choose one
|
||||
according to policies set for the particular spack installation. If
|
||||
the spec is ambiguous, i.e. it could match multiple versions, Spack
|
||||
will choose a version within the spec's constraints according to
|
||||
policies set for the particular Spack installation.
|
||||
|
||||
Details about how versions are compared and how Spack determines if
|
||||
one version is less than another are discussed in the developer guide.
|
||||
|
||||
@@ -1331,23 +1226,6 @@ variants using the backwards compatibility syntax and uses only ``~``
|
||||
for disabled boolean variants. The ``-`` and spaces on the command
|
||||
line are provided for convenience and legibility.
|
||||
|
||||
Spack allows variants to propagate their value to the package's
|
||||
dependency by using ``++``, ``--``, and ``~~`` for boolean variants.
|
||||
For example, for a ``debug`` variant:
|
||||
|
||||
.. code-block:: sh
|
||||
|
||||
mpileaks ++debug # enabled debug will be propagated to dependencies
|
||||
mpileaks +debug # only mpileaks will have debug enabled
|
||||
|
||||
To propagate the value of non-boolean variants Spack uses ``name==value``.
|
||||
For example, for the ``stackstart`` variant:
|
||||
|
||||
.. code-block:: sh
|
||||
|
||||
mpileaks stackstart==4 # variant will be propagated to dependencies
|
||||
mpileaks stackstart=4 # only mpileaks will have this variant value
|
||||
|
||||
^^^^^^^^^^^^^^
|
||||
Compiler Flags
|
||||
^^^^^^^^^^^^^^
|
||||
@@ -1355,15 +1233,10 @@ Compiler Flags
|
||||
Compiler flags are specified using the same syntax as non-boolean variants,
|
||||
but fulfill a different purpose. While the function of a variant is set by
|
||||
the package, compiler flags are used by the compiler wrappers to inject
|
||||
flags into the compile line of the build. Additionally, compiler flags can
|
||||
be inherited by dependencies by using ``==``.
|
||||
``spack install libdwarf cppflags=="-g"`` will install both libdwarf and
|
||||
libelf with the ``-g`` flag injected into their compile line.
|
||||
|
||||
.. note::
|
||||
|
||||
versions of spack prior to 0.19.0 will propagate compiler flags using
|
||||
the ``=`` syntax.
|
||||
flags into the compile line of the build. Additionally, compiler flags are
|
||||
inherited by dependencies. ``spack install libdwarf cppflags="-g"`` will
|
||||
install both libdwarf and libelf with the ``-g`` flag injected into their
|
||||
compile line.
|
||||
|
||||
Notice that the value of the compiler flags must be quoted if it
|
||||
contains any spaces. Any of ``cppflags=-O3``, ``cppflags="-O3"``,
|
||||
@@ -1565,7 +1438,7 @@ built.
|
||||
You can see what virtual packages a particular package provides by
|
||||
getting info on it:
|
||||
|
||||
.. command-output:: spack info --virtuals mpich
|
||||
.. command-output:: spack info mpich
|
||||
|
||||
Spack is unique in that its virtual packages can be versioned, just
|
||||
like regular packages. A particular version of a package may provide
|
||||
@@ -1612,30 +1485,6 @@ any MPI implementation will do. If another package depends on
|
||||
error. Likewise, if you try to plug in some package that doesn't
|
||||
provide MPI, Spack will raise an error.
|
||||
|
||||
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
|
||||
Explicit binding of virtual dependencies
|
||||
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
|
||||
|
||||
There are packages that provide more than just one virtual dependency. When interacting with them, users
|
||||
might want to utilize just a subset of what they could provide, and use other providers for virtuals they
|
||||
need.
|
||||
|
||||
It is possible to be more explicit and tell Spack which dependency should provide which virtual, using a
|
||||
special syntax:
|
||||
|
||||
.. code-block:: console
|
||||
|
||||
$ spack spec strumpack ^[virtuals=mpi] intel-parallel-studio+mkl ^[virtuals=lapack] openblas
|
||||
|
||||
Concretizing the spec above produces the following DAG:
|
||||
|
||||
.. figure:: images/strumpack_virtuals.svg
|
||||
:scale: 60 %
|
||||
:align: center
|
||||
|
||||
where ``intel-parallel-studio`` *could* provide ``mpi``, ``lapack``, and ``blas`` but is used only for the former. The ``lapack``
|
||||
and ``blas`` dependencies are satisfied by ``openblas``.
|
||||
|
||||
^^^^^^^^^^^^^^^^^^^^^^^^
|
||||
Specifying Specs by Hash
|
||||
^^^^^^^^^^^^^^^^^^^^^^^^
|
||||
@@ -1784,6 +1633,247 @@ check only local packages (as opposed to those used transparently from
|
||||
``upstream`` spack instances) and the ``-j,--json`` option to output
|
||||
machine-readable json data for any errors.
|
||||
|
||||
|
||||
.. _extensions:
|
||||
|
||||
---------------------------
|
||||
Extensions & Python support
|
||||
---------------------------
|
||||
|
||||
Spack's installation model assumes that each package will live in its
|
||||
own install prefix. However, certain packages are typically installed
|
||||
*within* the directory hierarchy of other packages. For example,
|
||||
`Python <https://www.python.org>`_ packages are typically installed in the
|
||||
``$prefix/lib/python-2.7/site-packages`` directory.
|
||||
|
||||
Spack has support for this type of installation as well. In Spack,
|
||||
a package that can live inside the prefix of another package is called
|
||||
an *extension*. Suppose you have Python installed like so:
|
||||
|
||||
.. code-block:: console
|
||||
|
||||
$ spack find python
|
||||
==> 1 installed packages.
|
||||
-- linux-debian7-x86_64 / gcc@4.4.7 --------------------------------
|
||||
python@2.7.8
|
||||
|
||||
.. _cmd-spack-extensions:
|
||||
|
||||
^^^^^^^^^^^^^^^^^^^^
|
||||
``spack extensions``
|
||||
^^^^^^^^^^^^^^^^^^^^
|
||||
|
||||
You can find extensions for your Python installation like this:
|
||||
|
||||
.. code-block:: console
|
||||
|
||||
$ spack extensions python
|
||||
==> python@2.7.8%gcc@4.4.7 arch=linux-debian7-x86_64-703c7a96
|
||||
==> 36 extensions:
|
||||
geos py-ipython py-pexpect py-pyside py-sip
|
||||
py-basemap py-libxml2 py-pil py-pytz py-six
|
||||
py-biopython py-mako py-pmw py-rpy2 py-sympy
|
||||
py-cython py-matplotlib py-pychecker py-scientificpython py-virtualenv
|
||||
py-dateutil py-mpi4py py-pygments py-scikit-learn
|
||||
py-epydoc py-mx py-pylint py-scipy
|
||||
py-gnuplot py-nose py-pyparsing py-setuptools
|
||||
py-h5py py-numpy py-pyqt py-shiboken
|
||||
|
||||
==> 12 installed:
|
||||
-- linux-debian7-x86_64 / gcc@4.4.7 --------------------------------
|
||||
py-dateutil@2.4.0 py-nose@1.3.4 py-pyside@1.2.2
|
||||
py-dateutil@2.4.0 py-numpy@1.9.1 py-pytz@2014.10
|
||||
py-ipython@2.3.1 py-pygments@2.0.1 py-setuptools@11.3.1
|
||||
py-matplotlib@1.4.2 py-pyparsing@2.0.3 py-six@1.9.0
|
||||
|
||||
==> None activated.
|
||||
|
||||
The extensions are a subset of what's returned by ``spack list``, and
|
||||
they are packages like any other. They are installed into their own
|
||||
prefixes, and you can see this with ``spack find --paths``:
|
||||
|
||||
.. code-block:: console
|
||||
|
||||
$ spack find --paths py-numpy
|
||||
==> 1 installed packages.
|
||||
-- linux-debian7-x86_64 / gcc@4.4.7 --------------------------------
|
||||
py-numpy@1.9.1 ~/spack/opt/linux-debian7-x86_64/gcc@4.4.7/py-numpy@1.9.1-66733244
|
||||
|
||||
However, even though this package is installed, you cannot use it
|
||||
directly when you run ``python``:
|
||||
|
||||
.. code-block:: console
|
||||
|
||||
$ spack load python
|
||||
$ python
|
||||
Python 2.7.8 (default, Feb 17 2015, 01:35:25)
|
||||
[GCC 4.4.7 20120313 (Red Hat 4.4.7-11)] on linux2
|
||||
Type "help", "copyright", "credits" or "license" for more information.
|
||||
>>> import numpy
|
||||
Traceback (most recent call last):
|
||||
File "<stdin>", line 1, in <module>
|
||||
ImportError: No module named numpy
|
||||
>>>
|
||||
|
||||
^^^^^^^^^^^^^^^^
|
||||
Using Extensions
|
||||
^^^^^^^^^^^^^^^^
|
||||
|
||||
There are four ways to get ``numpy`` working in Python. The first is
|
||||
to use :ref:`shell-support`. You can simply ``load`` the extension,
|
||||
and it will be added to the ``PYTHONPATH`` in your current shell:
|
||||
|
||||
.. code-block:: console
|
||||
|
||||
$ spack load python
|
||||
$ spack load py-numpy
|
||||
|
||||
Now ``import numpy`` will succeed for as long as you keep your current
|
||||
session open.
|
||||
The loaded packages can be checked using ``spack find --loaded``
|
||||
|
||||
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
|
||||
Loading Extensions via Modules
|
||||
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
|
||||
|
||||
Instead of using Spack's environment modification capabilities through
|
||||
the ``spack load`` command, you can load numpy through your
|
||||
environment modules (using ``environment-modules`` or ``lmod``). This
|
||||
will also add the extension to the ``PYTHONPATH`` in your current
|
||||
shell.
|
||||
|
||||
.. code-block:: console
|
||||
|
||||
$ module load <name of numpy module>
|
||||
|
||||
If you do not know the name of the specific numpy module you wish to
|
||||
load, you can use the ``spack module tcl|lmod loads`` command to get
|
||||
the name of the module from the Spack spec.
|
||||
|
||||
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
|
||||
Activating Extensions in a View
|
||||
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
|
||||
|
||||
Another way to use extensions is to create a view, which merges the
|
||||
python installation along with the extensions into a single prefix.
|
||||
See :ref:`configuring_environment_views` for a more in-depth description
|
||||
of views.
|
||||
|
||||
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
|
||||
Activating Extensions Globally
|
||||
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
|
||||
|
||||
As an alternative to creating a merged prefix with Python and its extensions,
|
||||
and prior to support for views, Spack has provided a means to install the
|
||||
extension into the Spack installation prefix for the extendee. This has
|
||||
typically been useful since extendable packages typically search their own
|
||||
installation path for addons by default.
|
||||
|
||||
Global activations are performed with the ``spack activate`` command:
|
||||
|
||||
.. _cmd-spack-activate:
|
||||
|
||||
^^^^^^^^^^^^^^^^^^
|
||||
``spack activate``
|
||||
^^^^^^^^^^^^^^^^^^
|
||||
|
||||
.. code-block:: console
|
||||
|
||||
$ spack activate py-numpy
|
||||
==> Activated extension py-setuptools@11.3.1%gcc@4.4.7 arch=linux-debian7-x86_64-3c74eb69 for python@2.7.8%gcc@4.4.7.
|
||||
==> Activated extension py-nose@1.3.4%gcc@4.4.7 arch=linux-debian7-x86_64-5f70f816 for python@2.7.8%gcc@4.4.7.
|
||||
==> Activated extension py-numpy@1.9.1%gcc@4.4.7 arch=linux-debian7-x86_64-66733244 for python@2.7.8%gcc@4.4.7.
|
||||
|
||||
Several things have happened here. The user requested that
|
||||
``py-numpy`` be activated in the ``python`` installation it was built
|
||||
with. Spack knows that ``py-numpy`` depends on ``py-nose`` and
|
||||
``py-setuptools``, so it activated those packages first. Finally,
|
||||
once all dependencies were activated in the ``python`` installation,
|
||||
``py-numpy`` was activated as well.
|
||||
|
||||
If we run ``spack extensions`` again, we now see the three new
|
||||
packages listed as activated:
|
||||
|
||||
.. code-block:: console
|
||||
|
||||
$ spack extensions python
|
||||
==> python@2.7.8%gcc@4.4.7 arch=linux-debian7-x86_64-703c7a96
|
||||
==> 36 extensions:
|
||||
geos py-ipython py-pexpect py-pyside py-sip
|
||||
py-basemap py-libxml2 py-pil py-pytz py-six
|
||||
py-biopython py-mako py-pmw py-rpy2 py-sympy
|
||||
py-cython py-matplotlib py-pychecker py-scientificpython py-virtualenv
|
||||
py-dateutil py-mpi4py py-pygments py-scikit-learn
|
||||
py-epydoc py-mx py-pylint py-scipy
|
||||
py-gnuplot py-nose py-pyparsing py-setuptools
|
||||
py-h5py py-numpy py-pyqt py-shiboken
|
||||
|
||||
==> 12 installed:
|
||||
-- linux-debian7-x86_64 / gcc@4.4.7 --------------------------------
|
||||
py-dateutil@2.4.0 py-nose@1.3.4 py-pyside@1.2.2
|
||||
py-dateutil@2.4.0 py-numpy@1.9.1 py-pytz@2014.10
|
||||
py-ipython@2.3.1 py-pygments@2.0.1 py-setuptools@11.3.1
|
||||
py-matplotlib@1.4.2 py-pyparsing@2.0.3 py-six@1.9.0
|
||||
|
||||
==> 3 currently activated:
|
||||
-- linux-debian7-x86_64 / gcc@4.4.7 --------------------------------
|
||||
py-nose@1.3.4 py-numpy@1.9.1 py-setuptools@11.3.1
|
||||
|
||||
Now, when a user runs python, ``numpy`` will be available for import
|
||||
*without* the user having to explicitly load it. ``python@2.7.8`` now
|
||||
acts like a system Python installation with ``numpy`` installed inside
|
||||
of it.
|
||||
|
||||
Spack accomplishes this by symbolically linking the *entire* prefix of
|
||||
the ``py-numpy`` package into the prefix of the ``python`` package. To the
|
||||
python interpreter, it looks like ``numpy`` is installed in the
|
||||
``site-packages`` directory.
|
||||
|
||||
The only limitation of global activation is that you can only have a *single*
|
||||
version of an extension activated at a time. This is because multiple
|
||||
versions of the same extension would conflict if symbolically linked
|
||||
into the same prefix. Users who want a different version of a package
|
||||
can still get it by using environment modules or views, but they will have to
|
||||
explicitly load their preferred version.
|
||||
|
||||
^^^^^^^^^^^^^^^^^^^^^^^^^^
|
||||
``spack activate --force``
|
||||
^^^^^^^^^^^^^^^^^^^^^^^^^^
|
||||
|
||||
If, for some reason, you want to activate a package *without* its
|
||||
dependencies, you can use ``spack activate --force``:
|
||||
|
||||
.. code-block:: console
|
||||
|
||||
$ spack activate --force py-numpy
|
||||
==> Activated extension py-numpy@1.9.1%gcc@4.4.7 arch=linux-debian7-x86_64-66733244 for python@2.7.8%gcc@4.4.7.
|
||||
|
||||
.. _cmd-spack-deactivate:
|
||||
|
||||
^^^^^^^^^^^^^^^^^^^^
|
||||
``spack deactivate``
|
||||
^^^^^^^^^^^^^^^^^^^^
|
||||
|
||||
We've seen how activating an extension can be used to set up a default
|
||||
version of a Python module. Obviously, you may want to change that at
|
||||
some point. ``spack deactivate`` is the command for this. There are
|
||||
several variants:
|
||||
|
||||
* ``spack deactivate <extension>`` will deactivate a single
|
||||
extension. If another activated extension depends on this one,
|
||||
Spack will warn you and exit with an error.
|
||||
* ``spack deactivate --force <extension>`` deactivates an extension
|
||||
regardless of packages that depend on it.
|
||||
* ``spack deactivate --all <extension>`` deactivates an extension and
|
||||
all of its dependencies. Use ``--force`` to disregard dependents.
|
||||
* ``spack deactivate --all <extendee>`` deactivates *all* activated
|
||||
extensions of a package. For example, to deactivate *all* python
|
||||
extensions, use:
|
||||
|
||||
.. code-block:: console
|
||||
|
||||
$ spack deactivate --all python
|
||||
|
||||
-----------------------
|
||||
Filesystem requirements
|
||||
-----------------------
|
||||
|
@@ -1,4 +1,4 @@
|
||||
.. Copyright 2013-2024 Lawrence Livermore National Security, LLC and other
|
||||
.. Copyright 2013-2022 Lawrence Livermore National Security, LLC and other
|
||||
Spack Project Developers. See the top-level COPYRIGHT file for details.
|
||||
|
||||
SPDX-License-Identifier: (Apache-2.0 OR MIT)
|
||||
@@ -13,47 +13,49 @@ Some sites may encourage users to set up their own test environments
|
||||
before carrying out central installations, or some users may prefer to set
|
||||
up these environments on their own motivation. To reduce the load of
|
||||
recompiling otherwise identical package specs in different installations,
|
||||
installed packages can be put into build cache tarballs, pushed to
|
||||
installed packages can be put into build cache tarballs, uploaded to
|
||||
your Spack mirror and then downloaded and installed by others.
|
||||
|
||||
Whenever a mirror provides prebuilt packages, Spack will take these packages
|
||||
into account during concretization and installation, making ``spack install``
|
||||
significantly faster.
|
||||
|
||||
--------------------------
|
||||
Creating build cache files
|
||||
--------------------------
|
||||
|
||||
.. note::
|
||||
|
||||
We use the terms "build cache" and "mirror" often interchangeably. Mirrors
|
||||
are used during installation both for sources and prebuilt packages. Build
|
||||
caches refer to mirrors that provide prebuilt packages.
|
||||
|
||||
|
||||
----------------------
|
||||
Creating a build cache
|
||||
----------------------
|
||||
A compressed tarball of an installed package is created. Tarballs are created
|
||||
for all of its link and run dependency packages as well. Compressed tarballs are
|
||||
signed with gpg and signature and tarball and put in a ``.spack`` file. Optionally,
|
||||
the rpaths (and ids and deps on macOS) can be changed to paths relative to
|
||||
the Spack install tree before the tarball is created.
|
||||
|
||||
Build caches are created via:
|
||||
|
||||
.. code-block:: console
|
||||
|
||||
$ spack buildcache push <path/url/mirror name> <spec>
|
||||
$ spack buildcache create <spec>
|
||||
|
||||
This command takes the locally installed spec and its dependencies, and
|
||||
creates tarballs of their install prefixes. It also generates metadata files,
|
||||
signed with GPG. These tarballs and metadata files are then pushed to the
|
||||
provided binary cache, which can be a local directory or a remote URL.
|
||||
|
||||
Here is an example where a build cache is created in a local directory named
|
||||
"spack-cache", to which we push the "ninja" spec:
|
||||
If you wanted to create a build cache in a local directory, you would provide
|
||||
the ``-d`` argument to target that directory, again also specifying the spec.
|
||||
Here is an example creating a local directory, "spack-cache" and creating
|
||||
build cache files for the "ninja" spec:
|
||||
|
||||
.. code-block:: console
|
||||
|
||||
$ spack buildcache push ./spack-cache ninja
|
||||
==> Pushing binary packages to file:///home/spackuser/spack/spack-cache/build_cache
|
||||
$ mkdir -p ./spack-cache
|
||||
$ spack buildcache create -d ./spack-cache ninja
|
||||
==> Buildcache files will be output to file:///home/spackuser/spack/spack-cache/build_cache
|
||||
gpgconf: socketdir is '/run/user/1000/gnupg'
|
||||
gpg: using "E6DF6A8BD43208E4D6F392F23777740B7DBD643D" as default secret key for signing
|
||||
|
||||
Note that ``ninja`` must be installed locally for this to work.
|
||||
Note that the targeted spec must already be installed. Once you have a build cache,
|
||||
you can add it as a mirror, discussed next.
|
||||
|
||||
Once you have a build cache, you can add it as a mirror, discussed next.
|
||||
.. warning::
|
||||
|
||||
Spack improved the format used for binary caches in v0.18. The entire v0.18 series
|
||||
will be able to verify and install binary caches both in the new and in the old format.
|
||||
Support for using the old format is expected to end in v0.19, so we advise users to
|
||||
recreate relevant buildcaches using Spack v0.18 or higher.
|
||||
|
||||
---------------------------------------
|
||||
Finding or installing build cache files
|
||||
@@ -64,10 +66,10 @@ with:
|
||||
|
||||
.. code-block:: console
|
||||
|
||||
$ spack mirror add <name> <url or path>
|
||||
$ spack mirror add <name> <url>
|
||||
|
||||
|
||||
Both web URLs and local paths on the filesystem can be specified. In the previous
|
||||
Note that the url can be a web url _or_ a local filesystem location. In the previous
|
||||
example, you might add the directory "spack-cache" and call it ``mymirror``:
|
||||
|
||||
|
||||
@@ -92,7 +94,7 @@ this new build cache as follows:
|
||||
|
||||
.. code-block:: console
|
||||
|
||||
$ spack buildcache update-index ./spack-cache
|
||||
$ spack buildcache update-index -d spack-cache/
|
||||
|
||||
Now you can use list:
|
||||
|
||||
@@ -103,38 +105,46 @@ Now you can use list:
|
||||
-- linux-ubuntu20.04-skylake / gcc@9.3.0 ------------------------
|
||||
ninja@1.10.2
|
||||
|
||||
With ``mymirror`` configured and an index available, Spack will automatically
|
||||
use it during concretization and installation. That means that you can expect
|
||||
``spack install ninja`` to fetch prebuilt packages from the mirror. Let's
|
||||
verify by re-installing ninja:
|
||||
|
||||
Great! So now let's say you have a different spack installation, or perhaps just
|
||||
a different environment for the same one, and you want to install a package from
|
||||
that build cache. Let's first uninstall the actual library "ninja" to see if we can
|
||||
re-install it from the cache.
|
||||
|
||||
.. code-block:: console
|
||||
|
||||
$ spack uninstall ninja
|
||||
$ spack install ninja
|
||||
==> Installing ninja-1.11.1-yxferyhmrjkosgta5ei6b4lqf6bxbscz
|
||||
==> Fetching file:///home/spackuser/spack/spack-cache/build_cache/linux-ubuntu20.04-skylake-gcc-9.3.0-ninja-1.10.2-yxferyhmrjkosgta5ei6b4lqf6bxbscz.spec.json.sig
|
||||
gpg: Signature made Do 12 Jan 2023 16:01:04 CET
|
||||
gpg: using RSA key 61B82B2B2350E171BD17A1744E3A689061D57BF6
|
||||
gpg: Good signature from "example (GPG created for Spack) <example@example.com>" [ultimate]
|
||||
==> Fetching file:///home/spackuser/spack/spack-cache/build_cache/linux-ubuntu20.04-skylake/gcc-9.3.0/ninja-1.10.2/linux-ubuntu20.04-skylake-gcc-9.3.0-ninja-1.10.2-yxferyhmrjkosgta5ei6b4lqf6bxbscz.spack
|
||||
==> Extracting ninja-1.10.2-yxferyhmrjkosgta5ei6b4lqf6bxbscz from binary cache
|
||||
==> ninja: Successfully installed ninja-1.11.1-yxferyhmrjkosgta5ei6b4lqf6bxbscz
|
||||
Search: 0.00s. Fetch: 0.17s. Install: 0.12s. Total: 0.29s
|
||||
[+] /home/harmen/spack/opt/spack/linux-ubuntu20.04-skylake/gcc-9.3.0/ninja-1.11.1-yxferyhmrjkosgta5ei6b4lqf6bxbscz
|
||||
|
||||
|
||||
It worked! You've just completed a full example of creating a build cache with
|
||||
a spec of interest, adding it as a mirror, updating its index, listing the contents,
|
||||
and finally, installing from it.
|
||||
|
||||
By default Spack falls back to building from sources when the mirror is not available
|
||||
or when the package is simply not already available. To force Spack to only install
|
||||
prebuilt packages, you can use
|
||||
And now reinstall from the buildcache
|
||||
|
||||
.. code-block:: console
|
||||
|
||||
$ spack install --use-buildcache only <package>
|
||||
$ spack buildcache install ninja
|
||||
==> buildcache spec(s) matching ninja
|
||||
==> Fetching file:///home/spackuser/spack/spack-cache/build_cache/linux-ubuntu20.04-skylake/gcc-9.3.0/ninja-1.10.2/linux-ubuntu20.04-skylake-gcc-9.3.0-ninja-1.10.2-i4e5luour7jxdpc3bkiykd4imke3mkym.spack
|
||||
####################################################################################################################################### 100.0%
|
||||
==> Installing buildcache for spec ninja@1.10.2%gcc@9.3.0 arch=linux-ubuntu20.04-skylake
|
||||
gpgconf: socketdir is '/run/user/1000/gnupg'
|
||||
gpg: Signature made Tue 23 Mar 2021 10:16:29 PM MDT
|
||||
gpg: using RSA key E6DF6A8BD43208E4D6F392F23777740B7DBD643D
|
||||
gpg: Good signature from "spackuser (GPG created for Spack) <spackuser@noreply.users.github.com>" [ultimate]
|
||||
|
||||
|
||||
It worked! You've just completed a full example of creating a build cache with
|
||||
a spec of interest, adding it as a mirror, updating it's index, listing the contents,
|
||||
and finally, installing from it.
|
||||
|
||||
|
||||
Note that the above command is intended to install a particular package to a
|
||||
build cache you have created, and not to install a package from a build cache.
|
||||
For the latter, once a mirror is added, by default when you do ``spack install`` the ``--use-cache``
|
||||
flag is set, and you will install a package from a build cache if it is available.
|
||||
If you want to always use the cache, you can do:
|
||||
|
||||
.. code-block:: console
|
||||
|
||||
$ spack install --cache-only <package>
|
||||
|
||||
For example, to combine all of the commands above to add the E4S build cache
|
||||
and then install from it exclusively, you would do:
|
||||
@@ -143,7 +153,7 @@ and then install from it exclusively, you would do:
|
||||
|
||||
$ spack mirror add E4S https://cache.e4s.io
|
||||
$ spack buildcache keys --install --trust
|
||||
$ spack install --use-buildcache only <package>
|
||||
$ spack install --cache-only <package>
|
||||
|
||||
We use ``--install`` and ``--trust`` to say that we are installing keys to our
|
||||
keyring, and trusting all downloaded keys.
|
||||
@@ -153,181 +163,18 @@ keyring, and trusting all downloaded keys.
|
||||
List of popular build caches
|
||||
^^^^^^^^^^^^^^^^^^^^^^^^^^^^
|
||||
|
||||
* `Extreme-scale Scientific Software Stack (E4S) <https://e4s-project.github.io/>`_: `build cache <https://oaciss.uoregon.edu/e4s/inventory.html>`_'
|
||||
* `Extreme-scale Scientific Software Stack (E4S) <https://e4s-project.github.io/>`_: `build cache <https://oaciss.uoregon.edu/e4s/inventory.html>`_
|
||||
|
||||
-------------------
|
||||
Build cache signing
|
||||
-------------------
|
||||
|
||||
By default, Spack will add a cryptographic signature to each package pushed to
|
||||
a build cache, and verifies the signature when installing from a build cache.
|
||||
|
||||
Keys for signing can be managed with the :ref:`spack gpg <cmd-spack-gpg>` command,
|
||||
as well as ``spack buildcache keys`` as mentioned above.
|
||||
|
||||
You can disable signing when pushing with ``spack buildcache push --unsigned``,
|
||||
and disable verification when installing from any build cache with
|
||||
``spack install --no-check-signature``.
|
||||
|
||||
Alternatively, signing and verification can be enabled or disabled on a per build cache
|
||||
basis:
|
||||
|
||||
.. code-block:: console
|
||||
|
||||
$ spack mirror add --signed <name> <url> # enable signing and verification
|
||||
$ spack mirror add --unsigned <name> <url> # disable signing and verification
|
||||
|
||||
$ spack mirror set --signed <name> # enable signing and verification for an existing mirror
|
||||
$ spack mirror set --unsigned <name> # disable signing and verification for an existing mirror
|
||||
|
||||
Or you can directly edit the ``mirrors.yaml`` configuration file:
|
||||
|
||||
.. code-block:: yaml
|
||||
|
||||
mirrors:
|
||||
<name>:
|
||||
url: <url>
|
||||
signed: false # disable signing and verification
|
||||
|
||||
See also :ref:`mirrors`.
|
||||
|
||||
----------
|
||||
Relocation
|
||||
----------
|
||||
|
||||
When using buildcaches across different machines, it is likely that the install
|
||||
root will be different from the one used to build the binaries.
|
||||
|
||||
To address this issue, Spack automatically relocates all paths encoded in binaries
|
||||
and scripts to their new location upon install.
|
||||
|
||||
Note that there are some cases where this is not possible: if binaries are built in
|
||||
a relatively short path, and then installed to a longer path, there may not be enough
|
||||
space in the binary to encode the new path. In this case, Spack will fail to install
|
||||
the package from the build cache, and a source build is required.
|
||||
|
||||
To reduce the likelihood of this happening, it is highly recommended to add padding to
|
||||
the install root during the build, as specified in the :ref:`config <config-yaml>`
|
||||
section of the configuration:
|
||||
|
||||
.. code-block:: yaml
|
||||
|
||||
config:
|
||||
install_tree:
|
||||
root: /opt/spack
|
||||
padded_length: 128
|
||||
|
||||
|
||||
.. _binary_caches_oci:
|
||||
|
||||
---------------------------------
|
||||
Automatic push to a build cache
|
||||
---------------------------------
|
||||
|
||||
Sometimes it is convenient to push packages to a build cache as soon as they are installed. Spack can do this by setting autopush flag when adding a mirror:
|
||||
|
||||
.. code-block:: console
|
||||
|
||||
$ spack mirror add --autopush <name> <url or path>
|
||||
|
||||
Or the autopush flag can be set for an existing mirror:
|
||||
|
||||
.. code-block:: console
|
||||
|
||||
$ spack mirror set --autopush <name> # enable automatic push for an existing mirror
|
||||
$ spack mirror set --no-autopush <name> # disable automatic push for an existing mirror
|
||||
|
||||
Then after installing a package it is automatically pushed to all mirrors with ``autopush: true``. The command
|
||||
|
||||
.. code-block:: console
|
||||
|
||||
$ spack install <package>
|
||||
|
||||
will have the same effect as
|
||||
|
||||
.. code-block:: console
|
||||
|
||||
$ spack install <package>
|
||||
$ spack buildcache push <cache> <package> # for all caches with autopush: true
|
||||
|
||||
.. note::
|
||||
|
||||
Packages are automatically pushed to a build cache only if they are built from source.
|
||||
|
||||
-----------------------------------------
|
||||
OCI / Docker V2 registries as build cache
|
||||
-----------------------------------------
|
||||
|
||||
Spack can also use OCI or Docker V2 registries such as Dockerhub, Quay.io,
|
||||
Github Packages, GitLab Container Registry, JFrog Artifactory, and others
|
||||
as build caches. This is a convenient way to share binaries using public
|
||||
infrastructure, or to cache Spack built binaries in Github Actions and
|
||||
GitLab CI.
|
||||
|
||||
To get started, configure an OCI mirror using ``oci://`` as the scheme,
|
||||
and optionally specify a username and password (or personal access token):
|
||||
|
||||
.. code-block:: console
|
||||
|
||||
$ spack mirror add --oci-username username --oci-password password my_registry oci://example.com/my_image
|
||||
|
||||
Spack follows the naming conventions of Docker, with Dockerhub as the default
|
||||
registry. To use Dockerhub, you can omit the registry domain:
|
||||
|
||||
.. code-block:: console
|
||||
|
||||
$ spack mirror add --oci-username username --oci-password password my_registry oci://username/my_image
|
||||
|
||||
From here, you can use the mirror as any other build cache:
|
||||
|
||||
.. code-block:: console
|
||||
|
||||
$ spack buildcache push my_registry <specs...> # push to the registry
|
||||
$ spack install <specs...> # install from the registry
|
||||
|
||||
A unique feature of buildcaches on top of OCI registries is that it's incredibly
|
||||
easy to generate get a runnable container image with the binaries installed. This
|
||||
is a great way to make applications available to users without requiring them to
|
||||
install Spack -- all you need is Docker, Podman or any other OCI-compatible container
|
||||
runtime.
|
||||
|
||||
To produce container images, all you need to do is add the ``--base-image`` flag
|
||||
when pushing to the build cache:
|
||||
|
||||
.. code-block:: console
|
||||
|
||||
$ spack buildcache push --base-image ubuntu:20.04 my_registry ninja
|
||||
Pushed to example.com/my_image:ninja-1.11.1-yxferyhmrjkosgta5ei6b4lqf6bxbscz.spack
|
||||
|
||||
$ docker run -it example.com/my_image:ninja-1.11.1-yxferyhmrjkosgta5ei6b4lqf6bxbscz.spack
|
||||
root@e4c2b6f6b3f4:/# ninja --version
|
||||
1.11.1
|
||||
|
||||
If ``--base-image`` is not specified, distroless images are produced. In practice,
|
||||
you won't be able to run these as containers, since they don't come with libc and
|
||||
other system dependencies. However, they are still compatible with tools like
|
||||
``skopeo``, ``podman``, and ``docker`` for pulling and pushing.
|
||||
|
||||
.. note::
|
||||
The docker ``overlayfs2`` storage driver is limited to 128 layers, above which a
|
||||
``max depth exceeded`` error may be produced when pulling the image. There
|
||||
are `alternative drivers <https://docs.docker.com/storage/storagedriver/>`_.
|
||||
|
||||
------------------------------------
|
||||
Spack build cache for GitHub Actions
|
||||
------------------------------------
|
||||
|
||||
To significantly speed up Spack in GitHub Actions, binaries can be cached in
|
||||
GitHub Packages. This service is an OCI registry that can be linked to a GitHub
|
||||
repository.
|
||||
|
||||
Spack offers a public build cache for GitHub Actions with a set of common packages,
|
||||
which lets you get started quickly. See the following resources for more information:
|
||||
|
||||
* `spack/setup-spack <https://github.com/spack/setup-spack>`_ for setting up Spack in GitHub
|
||||
Actions
|
||||
* `spack/github-actions-buildcache <https://github.com/spack/github-actions-buildcache>`_ for
|
||||
more details on the public build cache
|
||||
Initial build and later installation do not necessarily happen at the same
|
||||
location. Spack provides a relocation capability and corrects for RPATHs and
|
||||
non-relocatable scripts. However, many packages compile paths into binary
|
||||
artifacts directly. In such cases, the build instructions of this package would
|
||||
need to be adjusted for better re-locatability.
|
||||
|
||||
.. _cmd-spack-buildcache:
|
||||
|
||||
@@ -336,7 +183,7 @@ which lets you get started quickly. See the following resources for more informa
|
||||
--------------------
|
||||
|
||||
^^^^^^^^^^^^^^^^^^^^^^^^^^^
|
||||
``spack buildcache push``
|
||||
``spack buildcache create``
|
||||
^^^^^^^^^^^^^^^^^^^^^^^^^^^
|
||||
|
||||
Create tarball of installed Spack package and all dependencies.
|
||||
|
@@ -1,4 +1,4 @@
|
||||
.. Copyright 2013-2024 Lawrence Livermore National Security, LLC and other
|
||||
.. Copyright 2013-2021 Lawrence Livermore National Security, LLC and other
|
||||
Spack Project Developers. See the top-level COPYRIGHT file for details.
|
||||
|
||||
SPDX-License-Identifier: (Apache-2.0 OR MIT)
|
||||
@@ -15,13 +15,15 @@ is an entire command dedicated to the management of every aspect of bootstrappin
|
||||
|
||||
.. command-output:: spack bootstrap --help
|
||||
|
||||
Spack is configured to bootstrap its dependencies lazily by default; i.e. the first time they are needed and
|
||||
can't be found. You can readily check if any prerequisite for using Spack is missing by running:
|
||||
The first thing to know to understand bootstrapping in Spack is that each of
|
||||
Spack's dependencies is bootstrapped lazily; i.e. the first time it is needed and
|
||||
can't be found. You can readily check if any prerequisite for using Spack
|
||||
is missing by running:
|
||||
|
||||
.. code-block:: console
|
||||
|
||||
% spack bootstrap status
|
||||
Spack v0.19.0 - python@3.8
|
||||
Spack v0.17.1 - python@3.8
|
||||
|
||||
[FAIL] Core Functionalities
|
||||
[B] MISSING "clingo": required to concretize specs
|
||||
@@ -32,14 +34,9 @@ can't be found. You can readily check if any prerequisite for using Spack is mis
|
||||
|
||||
Spack will take care of bootstrapping any missing dependency marked as [B]. Dependencies marked as [-] are instead required to be found on the system.
|
||||
|
||||
% echo $?
|
||||
1
|
||||
|
||||
In the case of the output shown above Spack detected that both ``clingo`` and ``gnupg``
|
||||
are missing and it's giving detailed information on why they are needed and whether
|
||||
they can be bootstrapped. The return code of this command summarizes the results, if any
|
||||
dependencies are missing the return code is ``1``, otherwise ``0``. Running a command that
|
||||
concretizes a spec, like:
|
||||
they can be bootstrapped. Running a command that concretize a spec, like:
|
||||
|
||||
.. code-block:: console
|
||||
|
||||
@@ -49,22 +46,7 @@ concretizes a spec, like:
|
||||
==> Installing "clingo-bootstrap@spack%apple-clang@12.0.0~docs~ipo+python build_type=Release arch=darwin-catalina-x86_64" from a buildcache
|
||||
[ ... ]
|
||||
|
||||
automatically triggers the bootstrapping of clingo from pre-built binaries as expected.
|
||||
|
||||
Users can also bootstrap all the dependencies needed by Spack in a single command, which
|
||||
might be useful to setup containers or other similar environments:
|
||||
|
||||
.. code-block:: console
|
||||
|
||||
$ spack bootstrap now
|
||||
==> Bootstrapping clingo from pre-built binaries
|
||||
==> Fetching https://mirror.spack.io/bootstrap/github-actions/v0.3/build_cache/linux-centos7-x86_64-gcc-10.2.1-clingo-bootstrap-spack-shqedxgvjnhiwdcdrvjhbd73jaevv7wt.spec.json
|
||||
==> Fetching https://mirror.spack.io/bootstrap/github-actions/v0.3/build_cache/linux-centos7-x86_64/gcc-10.2.1/clingo-bootstrap-spack/linux-centos7-x86_64-gcc-10.2.1-clingo-bootstrap-spack-shqedxgvjnhiwdcdrvjhbd73jaevv7wt.spack
|
||||
==> Installing "clingo-bootstrap@spack%gcc@10.2.1~docs~ipo+python+static_libstdcpp build_type=Release arch=linux-centos7-x86_64" from a buildcache
|
||||
==> Bootstrapping patchelf from pre-built binaries
|
||||
==> Fetching https://mirror.spack.io/bootstrap/github-actions/v0.3/build_cache/linux-centos7-x86_64-gcc-10.2.1-patchelf-0.15.0-htk62k7efo2z22kh6kmhaselru7bfkuc.spec.json
|
||||
==> Fetching https://mirror.spack.io/bootstrap/github-actions/v0.3/build_cache/linux-centos7-x86_64/gcc-10.2.1/patchelf-0.15.0/linux-centos7-x86_64-gcc-10.2.1-patchelf-0.15.0-htk62k7efo2z22kh6kmhaselru7bfkuc.spack
|
||||
==> Installing "patchelf@0.15.0%gcc@10.2.1 ldflags="-static-libstdc++ -static-libgcc" arch=linux-centos7-x86_64" from a buildcache
|
||||
triggers the bootstrapping of clingo from pre-built binaries as expected.
|
||||
|
||||
-----------------------
|
||||
The Bootstrapping store
|
||||
@@ -87,7 +69,7 @@ You can check what is installed in the bootstrapping store at any time using:
|
||||
|
||||
.. code-block:: console
|
||||
|
||||
% spack -b find
|
||||
% spack find -b
|
||||
==> Showing internal bootstrap store at "/Users/spack/.spack/bootstrap/store"
|
||||
==> 11 installed packages
|
||||
-- darwin-catalina-x86_64 / apple-clang@12.0.0 ------------------
|
||||
@@ -101,7 +83,7 @@ In case it is needed you can remove all the software in the current bootstrappin
|
||||
% spack clean -b
|
||||
==> Removing bootstrapped software and configuration in "/Users/spack/.spack/bootstrap"
|
||||
|
||||
% spack -b find
|
||||
% spack find -b
|
||||
==> Showing internal bootstrap store at "/Users/spack/.spack/bootstrap/store"
|
||||
==> 0 installed packages
|
||||
|
||||
@@ -125,19 +107,19 @@ If need be, you can disable bootstrapping altogether by running:
|
||||
|
||||
in which case it's your responsibility to ensure Spack runs in an
|
||||
environment where all its prerequisites are installed. You can
|
||||
also configure Spack to skip certain bootstrapping methods by disabling
|
||||
them specifically:
|
||||
also configure Spack to skip certain bootstrapping methods by *untrusting*
|
||||
them. For instance:
|
||||
|
||||
.. code-block:: console
|
||||
|
||||
% spack bootstrap disable github-actions
|
||||
==> "github-actions" is now disabled and will not be used for bootstrapping
|
||||
% spack bootstrap untrust github-actions
|
||||
==> "github-actions" is now untrusted and will not be used for bootstrapping
|
||||
|
||||
tells Spack to skip trying to bootstrap from binaries. To add the "github-actions" method back you can:
|
||||
|
||||
.. code-block:: console
|
||||
|
||||
% spack bootstrap enable github-actions
|
||||
% spack bootstrap trust github-actions
|
||||
|
||||
There is also an option to reset the bootstrapping configuration to Spack's defaults:
|
||||
|
||||
@@ -175,4 +157,4 @@ bootstrapping.
|
||||
|
||||
This command needs to be run on a machine with internet access and the resulting folder
|
||||
has to be moved over to the air-gapped system. Once the local sources are added using the
|
||||
commands suggested at the prompt, they can be used to bootstrap Spack.
|
||||
commands suggested at the prompt, they can be used to bootstrap Spack.
|
@@ -1,117 +1,278 @@
|
||||
.. Copyright 2013-2024 Lawrence Livermore National Security, LLC and other
|
||||
.. Copyright 2013-2022 Lawrence Livermore National Security, LLC and other
|
||||
Spack Project Developers. See the top-level COPYRIGHT file for details.
|
||||
|
||||
SPDX-License-Identifier: (Apache-2.0 OR MIT)
|
||||
|
||||
.. _build-settings:
|
||||
|
||||
================================
|
||||
Package Settings (packages.yaml)
|
||||
================================
|
||||
|
||||
Spack allows you to customize how your software is built through the
|
||||
``packages.yaml`` file. Using it, you can make Spack prefer particular
|
||||
implementations of virtual dependencies (e.g., MPI or BLAS/LAPACK),
|
||||
or you can make it prefer to build with particular compilers. You can
|
||||
also tell Spack to use *external* software installations already
|
||||
present on your system.
|
||||
|
||||
At a high level, the ``packages.yaml`` file is structured like this:
|
||||
|
||||
.. code-block:: yaml
|
||||
|
||||
packages:
|
||||
package1:
|
||||
# settings for package1
|
||||
package2:
|
||||
# settings for package2
|
||||
# ...
|
||||
all:
|
||||
# settings that apply to all packages.
|
||||
|
||||
So you can either set build preferences specifically for *one* package,
|
||||
or you can specify that certain settings should apply to *all* packages.
|
||||
The types of settings you can customize are described in detail below.
|
||||
|
||||
Spack's build defaults are in the default
|
||||
``etc/spack/defaults/packages.yaml`` file. You can override them in
|
||||
``~/.spack/packages.yaml`` or ``etc/spack/packages.yaml``. For more
|
||||
details on how this works, see :ref:`configuration-scopes`.
|
||||
|
||||
.. _sec-external-packages:
|
||||
|
||||
-----------------
|
||||
External Packages
|
||||
-----------------
|
||||
|
||||
Spack can be configured to use externally-installed
|
||||
packages rather than building its own packages. This may be desirable
|
||||
if machines ship with system packages, such as a customized MPI
|
||||
that should be used instead of Spack building its own MPI.
|
||||
|
||||
External packages are configured through the ``packages.yaml`` file.
|
||||
Here's an example of an external configuration:
|
||||
|
||||
.. code-block:: yaml
|
||||
|
||||
packages:
|
||||
openmpi:
|
||||
externals:
|
||||
- spec: "openmpi@1.4.3%gcc@4.4.7 arch=linux-debian7-x86_64"
|
||||
prefix: /opt/openmpi-1.4.3
|
||||
- spec: "openmpi@1.4.3%gcc@4.4.7 arch=linux-debian7-x86_64+debug"
|
||||
prefix: /opt/openmpi-1.4.3-debug
|
||||
- spec: "openmpi@1.6.5%intel@10.1 arch=linux-debian7-x86_64"
|
||||
prefix: /opt/openmpi-1.6.5-intel
|
||||
|
||||
This example lists three installations of OpenMPI, one built with GCC,
|
||||
one built with GCC and debug information, and another built with Intel.
|
||||
If Spack is asked to build a package that uses one of these MPIs as a
|
||||
dependency, it will use the pre-installed OpenMPI in
|
||||
the given directory. Note that the specified path is the top-level
|
||||
install prefix, not the ``bin`` subdirectory.
|
||||
|
||||
``packages.yaml`` can also be used to specify modules to load instead
|
||||
of the installation prefixes. The following example says that module
|
||||
``CMake/3.7.2`` provides cmake version 3.7.2.
|
||||
|
||||
.. code-block:: yaml
|
||||
|
||||
cmake:
|
||||
externals:
|
||||
- spec: cmake@3.7.2
|
||||
modules:
|
||||
- CMake/3.7.2
|
||||
|
||||
Each ``packages.yaml`` begins with a ``packages:`` attribute, followed
|
||||
by a list of package names. To specify externals, add an ``externals:``
|
||||
attribute under the package name, which lists externals.
|
||||
Each external should specify a ``spec:`` string that should be as
|
||||
well-defined as reasonably possible. If a
|
||||
package lacks a spec component, such as missing a compiler or
|
||||
package version, then Spack will guess the missing component based
|
||||
on its most-favored packages, and it may guess incorrectly.
|
||||
|
||||
Each package version and compiler listed in an external should
|
||||
have entries in Spack's packages and compiler configuration, even
|
||||
though the package and compiler may not ever be built.
|
||||
|
||||
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
|
||||
Prevent packages from being built from sources
|
||||
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
|
||||
|
||||
Adding an external spec in ``packages.yaml`` allows Spack to use an external location,
|
||||
but it does not prevent Spack from building packages from sources. In the above example,
|
||||
Spack might choose for many valid reasons to start building and linking with the
|
||||
latest version of OpenMPI rather than continue using the pre-installed OpenMPI versions.
|
||||
|
||||
To prevent this, the ``packages.yaml`` configuration also allows packages
|
||||
to be flagged as non-buildable. The previous example could be modified to
|
||||
be:
|
||||
|
||||
.. code-block:: yaml
|
||||
|
||||
packages:
|
||||
openmpi:
|
||||
externals:
|
||||
- spec: "openmpi@1.4.3%gcc@4.4.7 arch=linux-debian7-x86_64"
|
||||
prefix: /opt/openmpi-1.4.3
|
||||
- spec: "openmpi@1.4.3%gcc@4.4.7 arch=linux-debian7-x86_64+debug"
|
||||
prefix: /opt/openmpi-1.4.3-debug
|
||||
- spec: "openmpi@1.6.5%intel@10.1 arch=linux-debian7-x86_64"
|
||||
prefix: /opt/openmpi-1.6.5-intel
|
||||
buildable: False
|
||||
|
||||
The addition of the ``buildable`` flag tells Spack that it should never build
|
||||
its own version of OpenMPI from sources, and it will instead always rely on a pre-built
|
||||
OpenMPI.
|
||||
|
||||
.. note::
|
||||
|
||||
If ``concretizer:reuse`` is on (see :ref:`concretizer-options` for more information on that flag)
|
||||
pre-built specs include specs already available from a local store, an upstream store, a registered
|
||||
buildcache or specs marked as externals in ``packages.yaml``. If ``concretizer:reuse`` is off, only
|
||||
external specs in ``packages.yaml`` are included in the list of pre-built specs.
|
||||
|
||||
If an external module is specified as not buildable, then Spack will load the
|
||||
external module into the build environment which can be used for linking.
|
||||
|
||||
The ``buildable`` does not need to be paired with external packages.
|
||||
It could also be used alone to forbid packages that may be
|
||||
buggy or otherwise undesirable.
|
||||
|
||||
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
|
||||
Non-buildable virtual packages
|
||||
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
|
||||
|
||||
Virtual packages in Spack can also be specified as not buildable, and
|
||||
external implementations can be provided. In the example above,
|
||||
OpenMPI is configured as not buildable, but Spack will often prefer
|
||||
other MPI implementations over the externally available OpenMPI. Spack
|
||||
can be configured with every MPI provider not buildable individually,
|
||||
but more conveniently:
|
||||
|
||||
.. code-block:: yaml
|
||||
|
||||
packages:
|
||||
mpi:
|
||||
buildable: False
|
||||
openmpi:
|
||||
externals:
|
||||
- spec: "openmpi@1.4.3%gcc@4.4.7 arch=linux-debian7-x86_64"
|
||||
prefix: /opt/openmpi-1.4.3
|
||||
- spec: "openmpi@1.4.3%gcc@4.4.7 arch=linux-debian7-x86_64+debug"
|
||||
prefix: /opt/openmpi-1.4.3-debug
|
||||
- spec: "openmpi@1.6.5%intel@10.1 arch=linux-debian7-x86_64"
|
||||
prefix: /opt/openmpi-1.6.5-intel
|
||||
|
||||
Spack can then use any of the listed external implementations of MPI
|
||||
to satisfy a dependency, and will choose depending on the compiler and
|
||||
architecture.
|
||||
|
||||
In cases where the concretizer is configured to reuse specs, and other ``mpi`` providers
|
||||
(available via stores or buildcaches) are not wanted, Spack can be configured to require
|
||||
specs matching only the available externals:
|
||||
|
||||
.. code-block:: yaml
|
||||
|
||||
packages:
|
||||
mpi:
|
||||
buildable: False
|
||||
require:
|
||||
- one_of: [
|
||||
"openmpi@1.4.3%gcc@4.4.7 arch=linux-debian7-x86_64",
|
||||
"openmpi@1.4.3%gcc@4.4.7 arch=linux-debian7-x86_64+debug",
|
||||
"openmpi@1.6.5%intel@10.1 arch=linux-debian7-x86_64"
|
||||
]
|
||||
openmpi:
|
||||
externals:
|
||||
- spec: "openmpi@1.4.3%gcc@4.4.7 arch=linux-debian7-x86_64"
|
||||
prefix: /opt/openmpi-1.4.3
|
||||
- spec: "openmpi@1.4.3%gcc@4.4.7 arch=linux-debian7-x86_64+debug"
|
||||
prefix: /opt/openmpi-1.4.3-debug
|
||||
- spec: "openmpi@1.6.5%intel@10.1 arch=linux-debian7-x86_64"
|
||||
prefix: /opt/openmpi-1.6.5-intel
|
||||
|
||||
This configuration prevents any spec using MPI and originating from stores or buildcaches to be reused,
|
||||
unless it matches the requirements under ``packages:mpi:require``. For more information on requirements see
|
||||
:ref:`package-requirements`.
|
||||
|
||||
.. _cmd-spack-external-find:
|
||||
|
||||
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
|
||||
Automatically Find External Packages
|
||||
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
|
||||
|
||||
You can run the :ref:`spack external find <spack-external-find>` command
|
||||
to search for system-provided packages and add them to ``packages.yaml``.
|
||||
After running this command your ``packages.yaml`` may include new entries:
|
||||
|
||||
.. code-block:: yaml
|
||||
|
||||
packages:
|
||||
cmake:
|
||||
externals:
|
||||
- spec: cmake@3.17.2
|
||||
prefix: /usr
|
||||
|
||||
Generally this is useful for detecting a small set of commonly-used packages;
|
||||
for now this is generally limited to finding build-only dependencies.
|
||||
Specific limitations include:
|
||||
|
||||
* Packages are not discoverable by default: For a package to be
|
||||
discoverable with ``spack external find``, it needs to add special
|
||||
logic. See :ref:`here <make-package-findable>` for more details.
|
||||
* The logic does not search through module files, it can only detect
|
||||
packages with executables defined in ``PATH``; you can help Spack locate
|
||||
externals which use module files by loading any associated modules for
|
||||
packages that you want Spack to know about before running
|
||||
``spack external find``.
|
||||
* Spack does not overwrite existing entries in the package configuration:
|
||||
If there is an external defined for a spec at any configuration scope,
|
||||
then Spack will not add a new external entry (``spack config blame packages``
|
||||
can help locate all external entries).
|
||||
|
||||
.. _concretizer-options:
|
||||
|
||||
==========================================
|
||||
Concretization Settings (concretizer.yaml)
|
||||
==========================================
|
||||
----------------------
|
||||
Concretizer options
|
||||
----------------------
|
||||
|
||||
The ``concretizer.yaml`` configuration file allows to customize aspects of the
|
||||
algorithm used to select the dependencies you install. The default configuration
|
||||
is the following:
|
||||
``packages.yaml`` gives the concretizer preferences for specific packages,
|
||||
but you can also use ``concretizer.yaml`` to customize aspects of the
|
||||
algorithm it uses to select the dependencies you install:
|
||||
|
||||
.. literalinclude:: _spack_root/etc/spack/defaults/concretizer.yaml
|
||||
:language: yaml
|
||||
|
||||
--------------------------------
|
||||
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
|
||||
Reuse already installed packages
|
||||
--------------------------------
|
||||
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
|
||||
|
||||
The ``reuse`` attribute controls how aggressively Spack reuses binary packages during concretization. The
|
||||
attribute can either be a single value, or an object for more complex configurations.
|
||||
|
||||
In the former case ("single value") it allows Spack to:
|
||||
|
||||
1. Reuse installed packages and buildcaches for all the specs to be concretized, when ``true``
|
||||
2. Reuse installed packages and buildcaches only for the dependencies of the root specs, when ``dependencies``
|
||||
3. Disregard reusing installed packages and buildcaches, when ``false``
|
||||
|
||||
In case a finer control over which specs are reused is needed, then the value of this attribute can be
|
||||
an object, with the following keys:
|
||||
|
||||
1. ``roots``: if ``true`` root specs are reused, if ``false`` only dependencies of root specs are reused
|
||||
2. ``from``: list of sources from which reused specs are taken
|
||||
|
||||
Each source in ``from`` is itself an object:
|
||||
|
||||
.. list-table:: Attributes for a source or reusable specs
|
||||
:header-rows: 1
|
||||
|
||||
* - Attribute name
|
||||
- Description
|
||||
* - type (mandatory, string)
|
||||
- Can be ``local``, ``buildcache``, or ``external``
|
||||
* - include (optional, list of specs)
|
||||
- If present, reusable specs must match at least one of the constraint in the list
|
||||
* - exclude (optional, list of specs)
|
||||
- If present, reusable specs must not match any of the constraint in the list.
|
||||
|
||||
For instance, the following configuration:
|
||||
|
||||
.. code-block:: yaml
|
||||
|
||||
concretizer:
|
||||
reuse:
|
||||
roots: true
|
||||
from:
|
||||
- type: local
|
||||
include:
|
||||
- "%gcc"
|
||||
- "%clang"
|
||||
|
||||
tells the concretizer to reuse all specs compiled with either ``gcc`` or ``clang``, that are installed
|
||||
in the local store. Any spec from remote buildcaches is disregarded.
|
||||
|
||||
To reduce the boilerplate in configuration files, default values for the ``include`` and
|
||||
``exclude`` options can be pushed up one level:
|
||||
|
||||
.. code-block:: yaml
|
||||
|
||||
concretizer:
|
||||
reuse:
|
||||
roots: true
|
||||
include:
|
||||
- "%gcc"
|
||||
from:
|
||||
- type: local
|
||||
- type: buildcache
|
||||
- type: local
|
||||
include:
|
||||
- "foo %oneapi"
|
||||
|
||||
In the example above we reuse all specs compiled with ``gcc`` from the local store
|
||||
and remote buildcaches, and we also reuse ``foo %oneapi``. Note that the last source of
|
||||
specs override the default ``include`` attribute.
|
||||
|
||||
For one-off concretizations, the are command line arguments for each of the simple "single value"
|
||||
configurations. This means a user can:
|
||||
The ``reuse`` attribute controls whether Spack will prefer to use installed packages (``true``), or
|
||||
whether it will do a "fresh" installation and prefer the latest settings from
|
||||
``package.py`` files and ``packages.yaml`` (``false``).
|
||||
You can use:
|
||||
|
||||
.. code-block:: console
|
||||
|
||||
% spack install --reuse <spec>
|
||||
|
||||
to enable reuse for a single installation, or:
|
||||
to enable reuse for a single installation, and you can use:
|
||||
|
||||
.. code-block:: console
|
||||
|
||||
spack install --fresh <spec>
|
||||
|
||||
to do a fresh install if ``reuse`` is enabled by default.
|
||||
``reuse: true`` is the default.
|
||||
|
||||
.. seealso::
|
||||
|
||||
FAQ: :ref:`Why does Spack pick particular versions and variants? <faq-concretizer-precedence>`
|
||||
|
||||
------------------------------------------
|
||||
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
|
||||
Selection of the target microarchitectures
|
||||
------------------------------------------
|
||||
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
|
||||
|
||||
The options under the ``targets`` attribute control which targets are considered during a solve.
|
||||
Currently the options in this section are only configurable from the ``concretizer.yaml`` file
|
||||
Currently the options in this section are only configurable from the ``concretization.yaml`` file
|
||||
and there are no corresponding command line arguments to enable them for a single solve.
|
||||
|
||||
The ``granularity`` option can take two possible values: ``microarchitectures`` and ``generic``.
|
||||
@@ -141,28 +302,232 @@ microarchitectures considered during the solve are constrained to be compatible
|
||||
host Spack is currently running on. For instance, if this option is set to ``true``, a
|
||||
user cannot concretize for ``target=icelake`` while running on an Haswell node.
|
||||
|
||||
---------------
|
||||
Duplicate nodes
|
||||
---------------
|
||||
.. _package-preferences:
|
||||
|
||||
The ``duplicates`` attribute controls whether the DAG can contain multiple configurations of
|
||||
the same package. This is mainly relevant for build dependencies, which may have their version
|
||||
pinned by some nodes, and thus be required at different versions by different nodes in the same
|
||||
DAG.
|
||||
-------------------
|
||||
Package Preferences
|
||||
-------------------
|
||||
|
||||
The ``strategy`` option controls how the solver deals with duplicates. If the value is ``none``,
|
||||
then a single configuration per package is allowed in the DAG. This means, for instance, that only
|
||||
a single ``cmake`` or a single ``py-setuptools`` version is allowed. The result would be a slightly
|
||||
faster concretization, at the expense of making a few specs unsolvable.
|
||||
Spack can be configured to prefer certain compilers, package
|
||||
versions, dependencies, and variants during concretization.
|
||||
The preferred configuration can be controlled via the
|
||||
``~/.spack/packages.yaml`` file for user configurations, or the
|
||||
``etc/spack/packages.yaml`` site configuration.
|
||||
|
||||
If the value is ``minimal`` Spack will allow packages tagged as ``build-tools`` to have duplicates.
|
||||
This allows, for instance, to concretize specs whose nodes require different, and incompatible, ranges
|
||||
of some build tool. For instance, in the figure below the latest `py-shapely` requires a newer `py-setuptools`,
|
||||
while `py-numpy` still needs an older version:
|
||||
Here's an example ``packages.yaml`` file that sets preferred packages:
|
||||
|
||||
.. figure:: images/shapely_duplicates.svg
|
||||
:scale: 70 %
|
||||
:align: center
|
||||
.. code-block:: yaml
|
||||
|
||||
Up to Spack v0.20 ``duplicates:strategy:none`` was the default (and only) behavior. From Spack v0.21 the
|
||||
default behavior is ``duplicates:strategy:minimal``.
|
||||
packages:
|
||||
opencv:
|
||||
compiler: [gcc@4.9]
|
||||
variants: +debug
|
||||
gperftools:
|
||||
version: [2.2, 2.4, 2.3]
|
||||
all:
|
||||
compiler: [gcc@4.4.7, 'gcc@4.6:', intel, clang, pgi]
|
||||
target: [sandybridge]
|
||||
providers:
|
||||
mpi: [mvapich2, mpich, openmpi]
|
||||
|
||||
At a high level, this example is specifying how packages should be
|
||||
concretized. The opencv package should prefer using GCC 4.9 and
|
||||
be built with debug options. The gperftools package should prefer version
|
||||
2.2 over 2.4. Every package on the system should prefer mvapich2 for
|
||||
its MPI and GCC 4.4.7 (except for opencv, which overrides this by preferring GCC 4.9).
|
||||
These options are used to fill in implicit defaults. Any of them can be overwritten
|
||||
on the command line if explicitly requested.
|
||||
|
||||
Each ``packages.yaml`` file begins with the string ``packages:`` and
|
||||
package names are specified on the next level. The special string ``all``
|
||||
applies settings to *all* packages. Underneath each package name is one
|
||||
or more components: ``compiler``, ``variants``, ``version``,
|
||||
``providers``, and ``target``. Each component has an ordered list of
|
||||
spec ``constraints``, with earlier entries in the list being preferred
|
||||
over later entries.
|
||||
|
||||
Sometimes a package installation may have constraints that forbid
|
||||
the first concretization rule, in which case Spack will use the first
|
||||
legal concretization rule. Going back to the example, if a user
|
||||
requests gperftools 2.3 or later, then Spack will install version 2.4
|
||||
as the 2.4 version of gperftools is preferred over 2.3.
|
||||
|
||||
An explicit concretization rule in the preferred section will always
|
||||
take preference over unlisted concretizations. In the above example,
|
||||
xlc isn't listed in the compiler list. Every listed compiler from
|
||||
gcc to pgi will thus be preferred over the xlc compiler.
|
||||
|
||||
The syntax for the ``provider`` section differs slightly from other
|
||||
concretization rules. A provider lists a value that packages may
|
||||
``depend_on`` (e.g, MPI) and a list of rules for fulfilling that
|
||||
dependency.
|
||||
|
||||
.. _package-requirements:
|
||||
|
||||
--------------------
|
||||
Package Requirements
|
||||
--------------------
|
||||
|
||||
You can use the configuration to force the concretizer to choose
|
||||
specific properties for packages when building them. Like preferences,
|
||||
these are only applied when the package is required by some other
|
||||
request (e.g. if the package is needed as a dependency of a
|
||||
request to ``spack install``).
|
||||
|
||||
An example of where this is useful is if you have a package that
|
||||
is normally built as a dependency but only under certain circumstances
|
||||
(e.g. only when a variant on a dependent is active): you can make
|
||||
sure that it always builds the way you want it to; this distinguishes
|
||||
package configuration requirements from constraints that you add to
|
||||
``spack install`` or to environments (in those cases, the associated
|
||||
packages are always built).
|
||||
|
||||
The following is an example of how to enforce package properties in
|
||||
``packages.yaml``:
|
||||
|
||||
.. code-block:: yaml
|
||||
|
||||
packages:
|
||||
libfabric:
|
||||
require: "@1.13.2"
|
||||
openmpi:
|
||||
require:
|
||||
- any_of: ["~cuda", "%gcc"]
|
||||
mpich:
|
||||
require:
|
||||
- one_of: ["+cuda", "+rocm"]
|
||||
|
||||
Requirements are expressed using Spec syntax (the same as what is provided
|
||||
to ``spack install``). In the simplest case, you can specify attributes
|
||||
that you always want the package to have by providing a single spec to
|
||||
``require``; in the above example, ``libfabric`` will always build
|
||||
with version 1.13.2.
|
||||
|
||||
You can provide a more-relaxed constraint and allow the concretizer to
|
||||
choose between a set of options using ``any_of`` or ``one_of``:
|
||||
|
||||
* ``any_of`` is a list of specs. One of those specs must be satisfied
|
||||
and it is also allowed for the concretized spec to match more than one.
|
||||
In the above example, that means you could build ``openmpi+cuda%gcc``,
|
||||
``openmpi~cuda%clang`` or ``openmpi~cuda%gcc`` (in the last case,
|
||||
note that both specs in the ``any_of`` for ``openmpi`` are
|
||||
satisfied).
|
||||
* ``one_of`` is also a list of specs, and the final concretized spec
|
||||
must match exactly one of them. In the above example, that means
|
||||
you could build ``mpich+cuda`` or ``mpich+rocm`` but not
|
||||
``mpich+cuda+rocm`` (note the current package definition for
|
||||
``mpich`` already includes a conflict, so this is redundant but
|
||||
still demonstrates the concept).
|
||||
|
||||
.. note::
|
||||
|
||||
For ``any_of`` and ``one_of``, the order of specs indicates a
|
||||
preference: items that appear earlier in the list are preferred
|
||||
(note that these preferences can be ignored in favor of others).
|
||||
|
||||
^^^^^^^^^^^^^^^^^^^^^^^^^^^^
|
||||
Setting default requirements
|
||||
^^^^^^^^^^^^^^^^^^^^^^^^^^^^
|
||||
|
||||
You can also set default requirements for all packages under ``all``
|
||||
like this:
|
||||
|
||||
.. code-block:: yaml
|
||||
|
||||
packages:
|
||||
all:
|
||||
require: '%clang'
|
||||
|
||||
which means every spec will be required to use ``clang`` as a compiler.
|
||||
|
||||
Note that in this case ``all`` represents a *default set of requirements* -
|
||||
if there are specific package requirements, then the default requirements
|
||||
under ``all`` are disregarded. For example, with a configuration like this:
|
||||
|
||||
.. code-block:: yaml
|
||||
|
||||
packages:
|
||||
all:
|
||||
require: '%clang'
|
||||
cmake:
|
||||
require: '%gcc'
|
||||
|
||||
Spack requires ``cmake`` to use ``gcc`` and all other nodes (including cmake dependencies)
|
||||
to use ``clang``.
|
||||
|
||||
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
|
||||
Setting requirements on virtual specs
|
||||
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
|
||||
|
||||
A requirement on a virtual spec applies whenever that virtual is present in the DAG. This
|
||||
can be useful for fixing which virtual provider you want to use:
|
||||
|
||||
.. code-block:: yaml
|
||||
|
||||
packages:
|
||||
mpi:
|
||||
require: 'mvapich2 %gcc'
|
||||
|
||||
With the configuration above the only allowed ``mpi`` provider is ``mvapich2 %gcc``.
|
||||
|
||||
Requirements on the virtual spec and on the specific provider are both applied, if present. For
|
||||
instance with a configuration like:
|
||||
|
||||
.. code-block:: yaml
|
||||
|
||||
packages:
|
||||
mpi:
|
||||
require: 'mvapich2 %gcc'
|
||||
mvapich2:
|
||||
require: '~cuda'
|
||||
|
||||
you will use ``mvapich2~cuda %gcc`` as an ``mpi`` provider.
|
||||
|
||||
.. _package_permissions:
|
||||
|
||||
-------------------
|
||||
Package Permissions
|
||||
-------------------
|
||||
|
||||
Spack can be configured to assign permissions to the files installed
|
||||
by a package.
|
||||
|
||||
In the ``packages.yaml`` file under ``permissions``, the attributes
|
||||
``read``, ``write``, and ``group`` control the package
|
||||
permissions. These attributes can be set per-package, or for all
|
||||
packages under ``all``. If permissions are set under ``all`` and for a
|
||||
specific package, the package-specific settings take precedence.
|
||||
|
||||
The ``read`` and ``write`` attributes take one of ``user``, ``group``,
|
||||
and ``world``.
|
||||
|
||||
.. code-block:: yaml
|
||||
|
||||
packages:
|
||||
all:
|
||||
permissions:
|
||||
write: group
|
||||
group: spack
|
||||
my_app:
|
||||
permissions:
|
||||
read: group
|
||||
group: my_team
|
||||
|
||||
The permissions settings describe the broadest level of access to
|
||||
installations of the specified packages. The execute permissions of
|
||||
the file are set to the same level as read permissions for those files
|
||||
that are executable. The default setting for ``read`` is ``world``,
|
||||
and for ``write`` is ``user``. In the example above, installations of
|
||||
``my_app`` will be installed with user and group permissions but no
|
||||
world permissions, and owned by the group ``my_team``. All other
|
||||
packages will be installed with user and group write privileges, and
|
||||
world read privileges. Those packages will be owned by the group
|
||||
``spack``.
|
||||
|
||||
The ``group`` attribute assigns a Unix-style group to a package. All
|
||||
files installed by the package will be owned by the assigned group,
|
||||
and the sticky group bit will be set on the install prefix and all
|
||||
directories inside the install prefix. This will ensure that even
|
||||
manually placed files within the install prefix are owned by the
|
||||
assigned group. If no group is assigned, Spack will allow the OS
|
||||
default behavior to go as expected.
|
||||
|
@@ -1,4 +1,4 @@
|
||||
.. Copyright 2013-2024 Lawrence Livermore National Security, LLC and other
|
||||
.. Copyright 2013-2022 Lawrence Livermore National Security, LLC and other
|
||||
Spack Project Developers. See the top-level COPYRIGHT file for details.
|
||||
|
||||
SPDX-License-Identifier: (Apache-2.0 OR MIT)
|
||||
@@ -65,6 +65,7 @@ on these ideas for each distinct build system that Spack supports:
|
||||
build_systems/custompackage
|
||||
build_systems/inteloneapipackage
|
||||
build_systems/intelpackage
|
||||
build_systems/multiplepackage
|
||||
build_systems/rocmpackage
|
||||
build_systems/sourceforgepackage
|
||||
|
||||
|
@@ -1,13 +1,13 @@
|
||||
.. Copyright 2013-2024 Lawrence Livermore National Security, LLC and other
|
||||
.. Copyright 2013-2022 Lawrence Livermore National Security, LLC and other
|
||||
Spack Project Developers. See the top-level COPYRIGHT file for details.
|
||||
|
||||
SPDX-License-Identifier: (Apache-2.0 OR MIT)
|
||||
|
||||
.. _autotoolspackage:
|
||||
|
||||
---------
|
||||
Autotools
|
||||
---------
|
||||
----------------
|
||||
AutotoolsPackage
|
||||
----------------
|
||||
|
||||
Autotools is a GNU build system that provides a build-script generator.
|
||||
By running the platform-independent ``./configure`` script that comes
|
||||
@@ -17,7 +17,7 @@ with the package, you can generate a platform-dependent Makefile.
|
||||
Phases
|
||||
^^^^^^
|
||||
|
||||
The ``AutotoolsBuilder`` and ``AutotoolsPackage`` base classes come with the following phases:
|
||||
The ``AutotoolsPackage`` base class comes with the following phases:
|
||||
|
||||
#. ``autoreconf`` - generate the configure script
|
||||
#. ``configure`` - generate the Makefiles
|
||||
@@ -127,9 +127,9 @@ check out a commit from the ``master`` branch, you would want to add:
|
||||
|
||||
.. code-block:: python
|
||||
|
||||
depends_on("autoconf", type="build", when="@master")
|
||||
depends_on("automake", type="build", when="@master")
|
||||
depends_on("libtool", type="build", when="@master")
|
||||
depends_on('autoconf', type='build', when='@master')
|
||||
depends_on('automake', type='build', when='@master')
|
||||
depends_on('libtool', type='build', when='@master')
|
||||
|
||||
It is typically redundant to list the ``m4`` macro processor package as a
|
||||
dependency, since ``autoconf`` already depends on it.
|
||||
@@ -145,16 +145,7 @@ example, the ``bash`` shell is used to run the ``autogen.sh`` script.
|
||||
.. code-block:: python
|
||||
|
||||
def autoreconf(self, spec, prefix):
|
||||
which("bash")("autogen.sh")
|
||||
|
||||
If the ``package.py`` has build instructions in a separate
|
||||
:ref:`builder class <multiple_build_systems>`, the signature for a phase changes slightly:
|
||||
|
||||
.. code-block:: python
|
||||
|
||||
class AutotoolsBuilder(AutotoolsBuilder):
|
||||
def autoreconf(self, pkg, spec, prefix):
|
||||
which("bash")("autogen.sh")
|
||||
which('bash')('autogen.sh')
|
||||
|
||||
"""""""""""""""""""""""""""""""""""""""
|
||||
patching configure or Makefile.in files
|
||||
@@ -195,9 +186,9 @@ To opt out of this feature, use the following setting:
|
||||
To enable it conditionally on different architectures, define a property and
|
||||
make the package depend on ``gnuconfig`` as a build dependency:
|
||||
|
||||
.. code-block:: python
|
||||
.. code-block
|
||||
|
||||
depends_on("gnuconfig", when="@1.0:")
|
||||
depends_on('gnuconfig', when='@1.0:')
|
||||
|
||||
@property
|
||||
def patch_config_files(self):
|
||||
@@ -239,7 +230,7 @@ version, this can be done like so:
|
||||
|
||||
@property
|
||||
def force_autoreconf(self):
|
||||
return self.version == Version("1.2.3")
|
||||
return self.version == Version('1.2.3')
|
||||
|
||||
^^^^^^^^^^^^^^^^^^^^^^^
|
||||
Finding configure flags
|
||||
@@ -287,22 +278,13 @@ function like so:
|
||||
def configure_args(self):
|
||||
args = []
|
||||
|
||||
if self.spec.satisfies("+mpi"):
|
||||
args.append("--enable-mpi")
|
||||
if '+mpi' in self.spec:
|
||||
args.append('--enable-mpi')
|
||||
else:
|
||||
args.append("--disable-mpi")
|
||||
args.append('--disable-mpi')
|
||||
|
||||
return args
|
||||
|
||||
|
||||
Alternatively, you can use the :ref:`enable_or_disable <autotools_enable_or_disable>` helper:
|
||||
|
||||
.. code-block:: python
|
||||
|
||||
def configure_args(self):
|
||||
return [self.enable_or_disable("mpi")]
|
||||
|
||||
|
||||
Note that we are explicitly disabling MPI support if it is not
|
||||
requested. This is important, as many Autotools packages will enable
|
||||
options by default if the dependencies are found, and disable them
|
||||
@@ -313,11 +295,9 @@ and `here <https://wiki.gentoo.org/wiki/Project:Quality_Assurance/Automagic_depe
|
||||
for a rationale as to why these so-called "automagic" dependencies
|
||||
are a problem.
|
||||
|
||||
.. note::
|
||||
|
||||
By default, Autotools installs packages to ``/usr``. We don't want this,
|
||||
so Spack automatically adds ``--prefix=/path/to/installation/prefix``
|
||||
to your list of ``configure_args``. You don't need to add this yourself.
|
||||
By default, Autotools installs packages to ``/usr``. We don't want this,
|
||||
so Spack automatically adds ``--prefix=/path/to/installation/prefix``
|
||||
to your list of ``configure_args``. You don't need to add this yourself.
|
||||
|
||||
^^^^^^^^^^^^^^^^
|
||||
Helper functions
|
||||
@@ -328,8 +308,6 @@ You may have noticed that most of the Autotools flags are of the form
|
||||
``--without-baz``. Since these flags are so common, Spack provides a
|
||||
couple of helper functions to make your life easier.
|
||||
|
||||
.. _autotools_enable_or_disable:
|
||||
|
||||
"""""""""""""""""
|
||||
enable_or_disable
|
||||
"""""""""""""""""
|
||||
@@ -341,11 +319,11 @@ typically used to enable or disable some feature within the package.
|
||||
.. code-block:: python
|
||||
|
||||
variant(
|
||||
"memchecker",
|
||||
'memchecker',
|
||||
default=False,
|
||||
description="Memchecker support for debugging [degrades performance]"
|
||||
description='Memchecker support for debugging [degrades performance]'
|
||||
)
|
||||
config_args.extend(self.enable_or_disable("memchecker"))
|
||||
config_args.extend(self.enable_or_disable('memchecker'))
|
||||
|
||||
In this example, specifying the variant ``+memchecker`` will generate
|
||||
the following configuration options:
|
||||
@@ -365,15 +343,15 @@ the ``with_or_without`` method.
|
||||
.. code-block:: python
|
||||
|
||||
variant(
|
||||
"schedulers",
|
||||
'schedulers',
|
||||
values=disjoint_sets(
|
||||
("auto",), ("alps", "lsf", "tm", "slurm", "sge", "loadleveler")
|
||||
).with_non_feature_values("auto", "none"),
|
||||
('auto',), ('alps', 'lsf', 'tm', 'slurm', 'sge', 'loadleveler')
|
||||
).with_non_feature_values('auto', 'none'),
|
||||
description="List of schedulers for which support is enabled; "
|
||||
"'auto' lets openmpi determine",
|
||||
)
|
||||
if not spec.satisfies("schedulers=auto"):
|
||||
config_args.extend(self.with_or_without("schedulers"))
|
||||
if 'schedulers=auto' not in spec:
|
||||
config_args.extend(self.with_or_without('schedulers'))
|
||||
|
||||
In this example, specifying the variant ``schedulers=slurm,sge`` will
|
||||
generate the following configuration options:
|
||||
@@ -398,16 +376,16 @@ generated, using the ``activation_value`` argument to
|
||||
.. code-block:: python
|
||||
|
||||
variant(
|
||||
"fabrics",
|
||||
'fabrics',
|
||||
values=disjoint_sets(
|
||||
("auto",), ("psm", "psm2", "verbs", "mxm", "ucx", "libfabric")
|
||||
).with_non_feature_values("auto", "none"),
|
||||
('auto',), ('psm', 'psm2', 'verbs', 'mxm', 'ucx', 'libfabric')
|
||||
).with_non_feature_values('auto', 'none'),
|
||||
description="List of fabrics that are enabled; "
|
||||
"'auto' lets openmpi determine",
|
||||
)
|
||||
if not spec.satisfies("fabrics=auto"):
|
||||
config_args.extend(self.with_or_without("fabrics",
|
||||
activation_value="prefix"))
|
||||
if 'fabrics=auto' not in spec:
|
||||
config_args.extend(self.with_or_without('fabrics',
|
||||
activation_value='prefix'))
|
||||
|
||||
``activation_value`` accepts a callable that generates the configure
|
||||
parameter value given the variant value; but the special value
|
||||
@@ -431,16 +409,16 @@ When Spack variants and configure flags do not correspond one-to-one, the
|
||||
|
||||
.. code-block:: python
|
||||
|
||||
variant("debug_tools", default=False)
|
||||
config_args += self.enable_or_disable("debug-tools", variant="debug_tools")
|
||||
variant('debug_tools', default=False)
|
||||
config_args += self.enable_or_disable('debug-tools', variant='debug_tools')
|
||||
|
||||
Or when one variant controls multiple flags:
|
||||
|
||||
.. code-block:: python
|
||||
|
||||
variant("debug_tools", default=False)
|
||||
config_args += self.with_or_without("memchecker", variant="debug_tools")
|
||||
config_args += self.with_or_without("profiler", variant="debug_tools")
|
||||
variant('debug_tools', default=False)
|
||||
config_args += self.with_or_without('memchecker', variant='debug_tools')
|
||||
config_args += self.with_or_without('profiler', variant='debug_tools')
|
||||
|
||||
|
||||
""""""""""""""""""""
|
||||
@@ -454,8 +432,8 @@ For example:
|
||||
|
||||
.. code-block:: python
|
||||
|
||||
variant("profiler", when="@2.0:")
|
||||
config_args += self.with_or_without("profiler")
|
||||
variant('profiler', when='@2.0:')
|
||||
config_args += self.with_or_without('profiler')
|
||||
|
||||
will neither add ``--with-profiler`` nor ``--without-profiler`` when the version is
|
||||
below ``2.0``.
|
||||
@@ -474,10 +452,10 @@ the variant values require atypical behavior.
|
||||
def with_or_without_verbs(self, activated):
|
||||
# Up through version 1.6, this option was named --with-openib.
|
||||
# In version 1.7, it was renamed to be --with-verbs.
|
||||
opt = "verbs" if self.spec.satisfies("@1.7:") else "openib"
|
||||
opt = 'verbs' if self.spec.satisfies('@1.7:') else 'openib'
|
||||
if not activated:
|
||||
return f"--without-{opt}"
|
||||
return f"--with-{opt}={self.spec['rdma-core'].prefix}"
|
||||
return '--without-{0}'.format(opt)
|
||||
return '--with-{0}={1}'.format(opt, self.spec['rdma-core'].prefix)
|
||||
|
||||
Defining ``with_or_without_verbs`` overrides the behavior of a
|
||||
``fabrics=verbs`` variant, changing the configure-time option to
|
||||
@@ -501,7 +479,7 @@ do this like so:
|
||||
|
||||
.. code-block:: python
|
||||
|
||||
configure_directory = "src"
|
||||
configure_directory = 'src'
|
||||
|
||||
^^^^^^^^^^^^^^^^^^^^^^
|
||||
Building out of source
|
||||
@@ -513,7 +491,7 @@ This can be done using the ``build_directory`` variable:
|
||||
|
||||
.. code-block:: python
|
||||
|
||||
build_directory = "spack-build"
|
||||
build_directory = 'spack-build'
|
||||
|
||||
By default, Spack will build the package in the same directory that
|
||||
contains the ``configure`` script
|
||||
@@ -536,8 +514,8 @@ library or build the documentation, you can add these like so:
|
||||
|
||||
.. code-block:: python
|
||||
|
||||
build_targets = ["all", "docs"]
|
||||
install_targets = ["install", "docs"]
|
||||
build_targets = ['all', 'docs']
|
||||
install_targets = ['install', 'docs']
|
||||
|
||||
^^^^^^^
|
||||
Testing
|
||||
|
@@ -1,40 +1,17 @@
|
||||
.. Copyright 2013-2024 Lawrence Livermore National Security, LLC and other
|
||||
.. Copyright 2013-2022 Lawrence Livermore National Security, LLC and other
|
||||
Spack Project Developers. See the top-level COPYRIGHT file for details.
|
||||
|
||||
SPDX-License-Identifier: (Apache-2.0 OR MIT)
|
||||
|
||||
.. _bundlepackage:
|
||||
|
||||
------
|
||||
Bundle
|
||||
------
|
||||
-------------
|
||||
BundlePackage
|
||||
-------------
|
||||
|
||||
``BundlePackage`` represents a set of packages that are expected to work
|
||||
well together, such as a collection of commonly used software libraries.
|
||||
The associated software is specified as dependencies.
|
||||
|
||||
If it makes sense, variants, conflicts, and requirements can be added to
|
||||
the package. :ref:`Variants <variants>` ensure that common build options
|
||||
are consistent across the packages supporting them. :ref:`Conflicts
|
||||
and requirements <packaging_conflicts>` prevent attempts to build with known
|
||||
bugs or limitations.
|
||||
|
||||
For example, if ``MyBundlePackage`` is known to only build on ``linux``,
|
||||
it could use the ``require`` directive as follows:
|
||||
|
||||
.. code-block:: python
|
||||
|
||||
require("platform=linux", msg="MyBundlePackage only builds on linux")
|
||||
|
||||
Spack has a number of built-in bundle packages, such as:
|
||||
|
||||
* `AmdAocl <https://github.com/spack/spack/blob/develop/var/spack/repos/builtin/packages/amd-aocl/package.py>`_
|
||||
* `EcpProxyApps <https://github.com/spack/spack/blob/develop/var/spack/repos/builtin/packages/ecp-proxy-apps/package.py>`_
|
||||
* `Libc <https://github.com/spack/spack/blob/develop/var/spack/repos/builtin/packages/libc/package.py>`_
|
||||
* `Xsdk <https://github.com/spack/spack/blob/develop/var/spack/repos/builtin/packages/xsdk/package.py>`_
|
||||
|
||||
where ``Xsdk`` also inherits from ``CudaPackage`` and ``RocmPackage`` and
|
||||
``Libc`` is a virtual bundle package for the C standard library.
|
||||
``BundlePackage`` represents a set of packages that are expected to work well
|
||||
together, such as a collection of commonly used software libraries. The
|
||||
associated software is specified as bundle dependencies.
|
||||
|
||||
|
||||
^^^^^^^^
|
||||
|
@@ -1,13 +1,13 @@
|
||||
.. Copyright 2013-2024 Lawrence Livermore National Security, LLC and other
|
||||
.. Copyright 2013-2021 Lawrence Livermore National Security, LLC and other
|
||||
Spack Project Developers. See the top-level COPYRIGHT file for details.
|
||||
|
||||
SPDX-License-Identifier: (Apache-2.0 OR MIT)
|
||||
|
||||
.. _cachedcmakepackage:
|
||||
|
||||
-----------
|
||||
CachedCMake
|
||||
-----------
|
||||
------------------
|
||||
CachedCMakePackage
|
||||
------------------
|
||||
|
||||
The CachedCMakePackage base class is used for CMake-based workflows
|
||||
that create a CMake cache file prior to running ``cmake``. This is
|
||||
@@ -87,7 +87,7 @@ A typical usage of these methods may look something like this:
|
||||
|
||||
.. code-block:: python
|
||||
|
||||
def initconfig_mpi_entries(self):
|
||||
def initconfig_mpi_entries(self)
|
||||
# Get existing MPI configurations
|
||||
entries = super(self, Foo).initconfig_mpi_entries()
|
||||
|
||||
@@ -95,25 +95,25 @@ A typical usage of these methods may look something like this:
|
||||
# This spec has an MPI variant, and we need to enable MPI when it is on.
|
||||
# This hypothetical package controls MPI with the ``FOO_MPI`` option to
|
||||
# cmake.
|
||||
if self.spec.satisfies("+mpi"):
|
||||
entries.append(cmake_cache_option("FOO_MPI", True, "enable mpi"))
|
||||
if '+mpi' in self.spec:
|
||||
entries.append(cmake_cache_option('FOO_MPI', True, "enable mpi"))
|
||||
else:
|
||||
entries.append(cmake_cache_option("FOO_MPI", False, "disable mpi"))
|
||||
entries.append(cmake_cache_option('FOO_MPI', False, "disable mpi"))
|
||||
|
||||
def initconfig_package_entries(self):
|
||||
# Package specific options
|
||||
entries = []
|
||||
|
||||
entries.append("#Entries for build options")
|
||||
entries.append('#Entries for build options')
|
||||
|
||||
bar_on = self.spec.satisfies("+bar")
|
||||
entries.append(cmake_cache_option("FOO_BAR", bar_on, "toggle bar"))
|
||||
bar_on = '+bar' in self.spec
|
||||
entries.append(cmake_cache_option('FOO_BAR', bar_on, 'toggle bar'))
|
||||
|
||||
entries.append("#Entries for dependencies")
|
||||
entries.append('#Entries for dependencies')
|
||||
|
||||
if self.spec["blas"].name == "baz": # baz is our blas provider
|
||||
entries.append(cmake_cache_string("FOO_BLAS", "baz", "Use baz"))
|
||||
entries.append(cmake_cache_path("BAZ_PREFIX", self.spec["baz"].prefix))
|
||||
if self.spec['blas'].name == 'baz': # baz is our blas provider
|
||||
entries.append(cmake_cache_string('FOO_BLAS', 'baz', 'Use baz'))
|
||||
entries.append(cmake_cache_path('BAZ_PREFIX', self.spec['baz'].prefix))
|
||||
|
||||
^^^^^^^^^^^^^^^^^^^^^^
|
||||
External documentation
|
||||
|
@@ -1,13 +1,13 @@
|
||||
.. Copyright 2013-2024 Lawrence Livermore National Security, LLC and other
|
||||
.. Copyright 2013-2022 Lawrence Livermore National Security, LLC and other
|
||||
Spack Project Developers. See the top-level COPYRIGHT file for details.
|
||||
|
||||
SPDX-License-Identifier: (Apache-2.0 OR MIT)
|
||||
|
||||
.. _cmakepackage:
|
||||
|
||||
-----
|
||||
CMake
|
||||
-----
|
||||
------------
|
||||
CMakePackage
|
||||
------------
|
||||
|
||||
Like Autotools, CMake is a widely-used build-script generator. Designed
|
||||
by Kitware, CMake is the most popular build system for new C, C++, and
|
||||
@@ -21,7 +21,7 @@ whereas Autotools is Unix-only.
|
||||
Phases
|
||||
^^^^^^
|
||||
|
||||
The ``CMakeBuilder`` and ``CMakePackage`` base classes come with the following phases:
|
||||
The ``CMakePackage`` base class comes with the following phases:
|
||||
|
||||
#. ``cmake`` - generate the Makefile
|
||||
#. ``build`` - build the package
|
||||
@@ -82,7 +82,7 @@ class already contains:
|
||||
|
||||
.. code-block:: python
|
||||
|
||||
depends_on("cmake", type="build")
|
||||
depends_on('cmake', type='build')
|
||||
|
||||
|
||||
If you need to specify a particular version requirement, you can
|
||||
@@ -90,7 +90,7 @@ override this in your package:
|
||||
|
||||
.. code-block:: python
|
||||
|
||||
depends_on("cmake@2.8.12:", type="build")
|
||||
depends_on('cmake@2.8.12:', type='build')
|
||||
|
||||
|
||||
^^^^^^^^^^^^^^^^^^^
|
||||
@@ -130,17 +130,17 @@ Adding flags to cmake
|
||||
To add additional flags to the ``cmake`` call, simply override the
|
||||
``cmake_args`` function. The following example defines values for the flags
|
||||
``WHATEVER``, ``ENABLE_BROKEN_FEATURE``, ``DETECT_HDF5``, and ``THREADS`` with
|
||||
and without the :meth:`~spack.build_systems.cmake.CMakeBuilder.define` and
|
||||
:meth:`~spack.build_systems.cmake.CMakeBuilder.define_from_variant` helper functions:
|
||||
and without the :meth:`~spack.build_systems.cmake.CMakePackage.define` and
|
||||
:meth:`~spack.build_systems.cmake.CMakePackage.define_from_variant` helper functions:
|
||||
|
||||
.. code-block:: python
|
||||
|
||||
def cmake_args(self):
|
||||
args = [
|
||||
"-DWHATEVER:STRING=somevalue",
|
||||
self.define("ENABLE_BROKEN_FEATURE", False),
|
||||
self.define_from_variant("DETECT_HDF5", "hdf5"),
|
||||
self.define_from_variant("THREADS"), # True if +threads
|
||||
'-DWHATEVER:STRING=somevalue',
|
||||
self.define('ENABLE_BROKEN_FEATURE', False),
|
||||
self.define_from_variant('DETECT_HDF5', 'hdf5'),
|
||||
self.define_from_variant('THREADS'), # True if +threads
|
||||
]
|
||||
|
||||
return args
|
||||
@@ -151,10 +151,10 @@ and CMake simply ignores the empty command line argument. For example the follow
|
||||
|
||||
.. code-block:: python
|
||||
|
||||
variant("example", default=True, when="@2.0:")
|
||||
variant('example', default=True, when='@2.0:')
|
||||
|
||||
def cmake_args(self):
|
||||
return [self.define_from_variant("EXAMPLE", "example")]
|
||||
return [self.define_from_variant('EXAMPLE', 'example')]
|
||||
|
||||
will generate ``'cmake' '-DEXAMPLE=ON' ...`` when `@2.0: +example` is met, but will
|
||||
result in ``'cmake' '' ...`` when the spec version is below ``2.0``.
|
||||
@@ -193,9 +193,9 @@ a variant to control this:
|
||||
|
||||
.. code-block:: python
|
||||
|
||||
variant("build_type", default="RelWithDebInfo",
|
||||
description="CMake build type",
|
||||
values=("Debug", "Release", "RelWithDebInfo", "MinSizeRel"))
|
||||
variant('build_type', default='RelWithDebInfo',
|
||||
description='CMake build type',
|
||||
values=('Debug', 'Release', 'RelWithDebInfo', 'MinSizeRel'))
|
||||
|
||||
However, not every CMake package accepts all four of these options.
|
||||
Grep the ``CMakeLists.txt`` file to see if the default values are
|
||||
@@ -205,9 +205,9 @@ package overrides the default variant with:
|
||||
|
||||
.. code-block:: python
|
||||
|
||||
variant("build_type", default="DebugRelease",
|
||||
description="The build type to build",
|
||||
values=("Debug", "Release", "DebugRelease"))
|
||||
variant('build_type', default='DebugRelease',
|
||||
description='The build type to build',
|
||||
values=('Debug', 'Release', 'DebugRelease'))
|
||||
|
||||
For more information on ``CMAKE_BUILD_TYPE``, see:
|
||||
https://cmake.org/cmake/help/latest/variable/CMAKE_BUILD_TYPE.html
|
||||
@@ -250,7 +250,7 @@ generator is Ninja. To switch to the Ninja generator, simply add:
|
||||
|
||||
.. code-block:: python
|
||||
|
||||
generator("ninja")
|
||||
generator = 'Ninja'
|
||||
|
||||
|
||||
``CMakePackage`` defaults to "Unix Makefiles". If you switch to the
|
||||
@@ -258,7 +258,7 @@ Ninja generator, make sure to add:
|
||||
|
||||
.. code-block:: python
|
||||
|
||||
depends_on("ninja", type="build")
|
||||
depends_on('ninja', type='build')
|
||||
|
||||
to the package as well. Aside from that, you shouldn't need to do
|
||||
anything else. Spack will automatically detect that you are using
|
||||
@@ -288,7 +288,7 @@ like so:
|
||||
|
||||
.. code-block:: python
|
||||
|
||||
root_cmakelists_dir = "src"
|
||||
root_cmakelists_dir = 'src'
|
||||
|
||||
|
||||
Note that this path is relative to the root of the extracted tarball,
|
||||
@@ -304,7 +304,7 @@ different sub-directory, simply override ``build_directory`` like so:
|
||||
|
||||
.. code-block:: python
|
||||
|
||||
build_directory = "my-build"
|
||||
build_directory = 'my-build'
|
||||
|
||||
^^^^^^^^^^^^^^^^^^^^^^^^^
|
||||
Build and install targets
|
||||
@@ -324,8 +324,8 @@ library or build the documentation, you can add these like so:
|
||||
|
||||
.. code-block:: python
|
||||
|
||||
build_targets = ["all", "docs"]
|
||||
install_targets = ["install", "docs"]
|
||||
build_targets = ['all', 'docs']
|
||||
install_targets = ['install', 'docs']
|
||||
|
||||
^^^^^^^
|
||||
Testing
|
||||
|
@@ -1,13 +1,13 @@
|
||||
.. Copyright 2013-2024 Lawrence Livermore National Security, LLC and other
|
||||
.. Copyright 2013-2022 Lawrence Livermore National Security, LLC and other
|
||||
Spack Project Developers. See the top-level COPYRIGHT file for details.
|
||||
|
||||
SPDX-License-Identifier: (Apache-2.0 OR MIT)
|
||||
|
||||
.. _cudapackage:
|
||||
|
||||
----
|
||||
Cuda
|
||||
----
|
||||
-----------
|
||||
CudaPackage
|
||||
-----------
|
||||
|
||||
Different from other packages, ``CudaPackage`` does not represent a build system.
|
||||
Instead its goal is to simplify and unify usage of ``CUDA`` in other packages by providing a `mixin-class <https://en.wikipedia.org/wiki/Mixin>`_.
|
||||
@@ -28,14 +28,11 @@ This package provides the following variants:
|
||||
|
||||
* **cuda_arch**
|
||||
|
||||
This variant supports the optional specification of one or multiple architectures.
|
||||
This variant supports the optional specification of the architecture.
|
||||
Valid values are maintained in the ``cuda_arch_values`` property and
|
||||
are the numeric character equivalent of the compute capability version
|
||||
(e.g., '10' for version 1.0). Each provided value affects associated
|
||||
``CUDA`` dependencies and compiler conflicts.
|
||||
|
||||
The variant builds both PTX code for the _virtual_ architecture
|
||||
(e.g. ``compute_10``) and binary code for the _real_ architecture (e.g. ``sm_10``).
|
||||
|
||||
GPUs and their compute capability versions are listed at
|
||||
https://developer.nvidia.com/cuda-gpus .
|
||||
@@ -54,8 +51,8 @@ to terminate such build attempts with a suitable message:
|
||||
|
||||
.. code-block:: python
|
||||
|
||||
conflicts("cuda_arch=none", when="+cuda",
|
||||
msg="CUDA architecture is required")
|
||||
conflicts('cuda_arch=none', when='+cuda',
|
||||
msg='CUDA architecture is required')
|
||||
|
||||
Similarly, if your software does not support all versions of the property,
|
||||
you could add ``conflicts`` to your package for those versions. For example,
|
||||
@@ -66,13 +63,13 @@ custom message should a user attempt such a build:
|
||||
.. code-block:: python
|
||||
|
||||
unsupported_cuda_archs = [
|
||||
"10", "11", "12", "13",
|
||||
"20", "21",
|
||||
"30", "32", "35", "37"
|
||||
'10', '11', '12', '13',
|
||||
'20', '21',
|
||||
'30', '32', '35', '37'
|
||||
]
|
||||
for value in unsupported_cuda_archs:
|
||||
conflicts(f"cuda_arch={value}", when="+cuda",
|
||||
msg=f"CUDA architecture {value} is not supported")
|
||||
conflicts('cuda_arch={0}'.format(value), when='+cuda',
|
||||
msg='CUDA architecture {0} is not supported'.format(value))
|
||||
|
||||
^^^^^^^
|
||||
Methods
|
||||
@@ -83,7 +80,7 @@ standard CUDA compiler flags.
|
||||
|
||||
**cuda_flags**
|
||||
|
||||
This built-in static method returns a list of command line flags
|
||||
This built-in static method returns a list of command line flags
|
||||
for the chosen ``cuda_arch`` value(s). The flags are intended to
|
||||
be passed to the CUDA compiler driver (i.e., ``nvcc``).
|
||||
|
||||
@@ -107,16 +104,16 @@ class of your package. For example, you can add it to your
|
||||
spec = self.spec
|
||||
args = []
|
||||
...
|
||||
if spec.satisfies("+cuda"):
|
||||
if '+cuda' in spec:
|
||||
# Set up the cuda macros needed by the build
|
||||
args.append("-DWITH_CUDA=ON")
|
||||
cuda_arch_list = spec.variants["cuda_arch"].value
|
||||
args.append('-DWITH_CUDA=ON')
|
||||
cuda_arch_list = spec.variants['cuda_arch'].value
|
||||
cuda_arch = cuda_arch_list[0]
|
||||
if cuda_arch != "none":
|
||||
args.append(f"-DCUDA_FLAGS=-arch=sm_{cuda_arch}")
|
||||
if cuda_arch != 'none':
|
||||
args.append('-DCUDA_FLAGS=-arch=sm_{0}'.format(cuda_arch))
|
||||
else:
|
||||
# Ensure build with cuda is disabled
|
||||
args.append("-DWITH_CUDA=OFF")
|
||||
args.append('-DWITH_CUDA=OFF')
|
||||
...
|
||||
return args
|
||||
|
||||
@@ -125,7 +122,7 @@ You will need to customize options as needed for your build.
|
||||
|
||||
This example also illustrates how to check for the ``cuda`` variant using
|
||||
``self.spec`` and how to retrieve the ``cuda_arch`` variant's value, which
|
||||
is a list, using ``self.spec.variants["cuda_arch"].value``.
|
||||
is a list, using ``self.spec.variants['cuda_arch'].value``.
|
||||
|
||||
With over 70 packages using ``CudaPackage`` as of January 2021 there are
|
||||
lots of examples to choose from to get more ideas for using this package.
|
||||
|
@@ -1,4 +1,4 @@
|
||||
.. Copyright 2013-2024 Lawrence Livermore National Security, LLC and other
|
||||
.. Copyright 2013-2022 Lawrence Livermore National Security, LLC and other
|
||||
Spack Project Developers. See the top-level COPYRIGHT file for details.
|
||||
|
||||
SPDX-License-Identifier: (Apache-2.0 OR MIT)
|
||||
@@ -57,13 +57,13 @@ If you look at the ``perl`` package, you'll see:
|
||||
|
||||
.. code-block:: python
|
||||
|
||||
phases = ["configure", "build", "install"]
|
||||
phases = ['configure', 'build', 'install']
|
||||
|
||||
Similarly, ``cmake`` defines:
|
||||
|
||||
.. code-block:: python
|
||||
|
||||
phases = ["bootstrap", "build", "install"]
|
||||
phases = ['bootstrap', 'build', 'install']
|
||||
|
||||
If we look at the ``cmake`` example, this tells Spack's ``PackageBase``
|
||||
class to run the ``bootstrap``, ``build``, and ``install`` functions
|
||||
@@ -78,7 +78,7 @@ If we look at ``perl``, we see that it defines a ``configure`` method:
|
||||
.. code-block:: python
|
||||
|
||||
def configure(self, spec, prefix):
|
||||
configure = Executable("./Configure")
|
||||
configure = Executable('./Configure')
|
||||
configure(*self.configure_args())
|
||||
|
||||
There is also a corresponding ``configure_args`` function that handles
|
||||
@@ -92,7 +92,7 @@ phases are pretty simple:
|
||||
make()
|
||||
|
||||
def install(self, spec, prefix):
|
||||
make("install")
|
||||
make('install')
|
||||
|
||||
The ``cmake`` package looks very similar, but with a ``bootstrap``
|
||||
function instead of ``configure``:
|
||||
@@ -100,14 +100,14 @@ function instead of ``configure``:
|
||||
.. code-block:: python
|
||||
|
||||
def bootstrap(self, spec, prefix):
|
||||
bootstrap = Executable("./bootstrap")
|
||||
bootstrap = Executable('./bootstrap')
|
||||
bootstrap(*self.bootstrap_args())
|
||||
|
||||
def build(self, spec, prefix):
|
||||
make()
|
||||
|
||||
def install(self, spec, prefix):
|
||||
make("install")
|
||||
make('install')
|
||||
|
||||
Again, there is a ``boostrap_args`` function that determines the
|
||||
correct bootstrap flags to use.
|
||||
@@ -128,16 +128,16 @@ before or after a particular phase. For example, in ``perl``, we see:
|
||||
|
||||
.. code-block:: python
|
||||
|
||||
@run_after("install")
|
||||
@run_after('install')
|
||||
def install_cpanm(self):
|
||||
spec = self.spec
|
||||
|
||||
if spec.satisfies("+cpanm"):
|
||||
with working_dir(join_path("cpanm", "cpanm")):
|
||||
perl = spec["perl"].command
|
||||
perl("Makefile.PL")
|
||||
if '+cpanm' in spec:
|
||||
with working_dir(join_path('cpanm', 'cpanm')):
|
||||
perl = spec['perl'].command
|
||||
perl('Makefile.PL')
|
||||
make()
|
||||
make("install")
|
||||
make('install')
|
||||
|
||||
This extra step automatically installs ``cpanm`` in addition to the
|
||||
base Perl installation.
|
||||
@@ -174,10 +174,10 @@ In the ``perl`` package, we can see:
|
||||
|
||||
.. code-block:: python
|
||||
|
||||
@run_after("build")
|
||||
@run_after('build')
|
||||
@on_package_attributes(run_tests=True)
|
||||
def test(self):
|
||||
make("test")
|
||||
make('test')
|
||||
|
||||
As you can guess, this runs ``make test`` *after* building the package,
|
||||
if and only if testing is requested. Again, this is not specific to
|
||||
@@ -189,7 +189,7 @@ custom build systems, it can be added to existing build systems as well.
|
||||
|
||||
.. code-block:: python
|
||||
|
||||
@run_after("install")
|
||||
@run_after('install')
|
||||
@on_package_attributes(run_tests=True)
|
||||
|
||||
works as expected. However, if you reverse the ordering:
|
||||
@@ -197,7 +197,7 @@ custom build systems, it can be added to existing build systems as well.
|
||||
.. code-block:: python
|
||||
|
||||
@on_package_attributes(run_tests=True)
|
||||
@run_after("install")
|
||||
@run_after('install')
|
||||
|
||||
the tests will always be run regardless of whether or not
|
||||
``--test=root`` is requested. See https://github.com/spack/spack/issues/3833
|
||||
|
@@ -1,4 +1,4 @@
|
||||
.. Copyright 2013-2024 Lawrence Livermore National Security, LLC and other
|
||||
.. Copyright 2013-2022 Lawrence Livermore National Security, LLC and other
|
||||
Spack Project Developers. See the top-level COPYRIGHT file for details.
|
||||
|
||||
SPDX-License-Identifier: (Apache-2.0 OR MIT)
|
||||
@@ -6,9 +6,9 @@
|
||||
.. _inteloneapipackage:
|
||||
|
||||
|
||||
===========
|
||||
IntelOneapi
|
||||
===========
|
||||
====================
|
||||
IntelOneapiPackage
|
||||
====================
|
||||
|
||||
|
||||
.. contents::
|
||||
@@ -25,18 +25,18 @@ use Spack to build packages with the tools.
|
||||
The Spack Python class ``IntelOneapiPackage`` is a base class that is
|
||||
used by ``IntelOneapiCompilers``, ``IntelOneapiMkl``,
|
||||
``IntelOneapiTbb`` and other classes to implement the oneAPI
|
||||
packages. Search for ``oneAPI`` at `packages.spack.io <https://packages.spack.io>`_ for the full
|
||||
list of available oneAPI packages, or use::
|
||||
packages. See the :ref:`package-list` for the full list of available
|
||||
oneAPI packages or use::
|
||||
|
||||
spack list -d oneAPI
|
||||
|
||||
For more information on a specific package, do::
|
||||
|
||||
spack info --all <package-name>
|
||||
spack info <package-name>
|
||||
|
||||
Intel no longer releases new versions of Parallel Studio, which can be
|
||||
used in Spack via the :ref:`intelpackage`. All of its components can
|
||||
now be found in oneAPI.
|
||||
now be found in oneAPI.
|
||||
|
||||
Examples
|
||||
========
|
||||
@@ -53,24 +53,18 @@ Install the oneAPI compilers::
|
||||
|
||||
Add the compilers to your ``compilers.yaml`` so spack can use them::
|
||||
|
||||
spack compiler add `spack location -i intel-oneapi-compilers`/compiler/latest/bin
|
||||
spack compiler add `spack location -i intel-oneapi-compilers`/compiler/latest/linux/bin/intel64
|
||||
spack compiler add `spack location -i intel-oneapi-compilers`/compiler/latest/linux/bin
|
||||
|
||||
Verify that the compilers are available::
|
||||
|
||||
spack compiler list
|
||||
|
||||
Note that 2024 and later releases do not include ``icc``. Before 2024,
|
||||
the package layout was different::
|
||||
|
||||
spack compiler add `spack location -i intel-oneapi-compilers`/compiler/latest/linux/bin/intel64
|
||||
spack compiler add `spack location -i intel-oneapi-compilers`/compiler/latest/linux/bin
|
||||
|
||||
The ``intel-oneapi-compilers`` package includes 2 families of
|
||||
compilers:
|
||||
|
||||
* ``intel``: ``icc``, ``icpc``, ``ifort``. Intel's *classic*
|
||||
compilers. 2024 and later releases contain ``ifort``, but not
|
||||
``icc`` and ``icpc``.
|
||||
compilers.
|
||||
* ``oneapi``: ``icx``, ``icpx``, ``ifx``. Intel's new generation of
|
||||
compilers based on LLVM.
|
||||
|
||||
@@ -82,55 +76,6 @@ To build with with ``icx``, do ::
|
||||
|
||||
spack install patchelf%oneapi
|
||||
|
||||
|
||||
Using oneAPI Spack environment
|
||||
-------------------------------
|
||||
|
||||
In this example, we build lammps with ``icx`` using Spack environment for oneAPI packages created by Intel. The
|
||||
compilers are installed with Spack like in example above.
|
||||
|
||||
Install the oneAPI compilers::
|
||||
|
||||
spack install intel-oneapi-compilers
|
||||
|
||||
Add the compilers to your ``compilers.yaml`` so Spack can use them::
|
||||
|
||||
spack compiler add `spack location -i intel-oneapi-compilers`/compiler/latest/bin
|
||||
spack compiler add `spack location -i intel-oneapi-compilers`/compiler/latest/bin
|
||||
|
||||
Verify that the compilers are available::
|
||||
|
||||
spack compiler list
|
||||
|
||||
Clone `spack-configs <https://github.com/spack/spack-configs>`_ repo and activate Intel oneAPI CPU environment::
|
||||
|
||||
git clone https://github.com/spack/spack-configs
|
||||
spack env activate spack-configs/INTEL/CPU
|
||||
spack concretize -f
|
||||
|
||||
`Intel oneAPI CPU environment <https://github.com/spack/spack-configs/blob/main/INTEL/CPU/spack.yaml>`_ contains applications tested and validated by Intel, this list is constantly extended. And currently it supports:
|
||||
|
||||
- `Devito <https://www.devitoproject.org/>`_
|
||||
- `GROMACS <https://www.gromacs.org/>`_
|
||||
- `HPCG <https://www.hpcg-benchmark.org/>`_
|
||||
- `HPL <https://netlib.org/benchmark/hpl/>`_
|
||||
- `LAMMPS <https://www.lammps.org/#gsc.tab=0>`_
|
||||
- `OpenFOAM <https://www.openfoam.com/>`_
|
||||
- `Quantum Espresso <https://www.quantum-espresso.org/>`_
|
||||
- `STREAM <https://www.cs.virginia.edu/stream/>`_
|
||||
- `WRF <https://github.com/wrf-model/WRF>`_
|
||||
|
||||
To build lammps with oneAPI compiler from this environment just run::
|
||||
|
||||
spack install lammps
|
||||
|
||||
Compiled binaries can be find using::
|
||||
|
||||
spack cd -i lammps
|
||||
|
||||
You can do the same for all other applications from this environment.
|
||||
|
||||
|
||||
Using oneAPI MPI to Satisfy a Virtual Dependence
|
||||
------------------------------------------------------
|
||||
|
||||
@@ -152,7 +97,8 @@ Compilers
|
||||
To use the compilers, add some information about the installation to
|
||||
``compilers.yaml``. For most users, it is sufficient to do::
|
||||
|
||||
spack compiler add /opt/intel/oneapi/compiler/latest/bin
|
||||
spack compiler add /opt/intel/oneapi/compiler/latest/linux/bin/intel64
|
||||
spack compiler add /opt/intel/oneapi/compiler/latest/linux/bin
|
||||
|
||||
Adapt the paths above if you did not install the tools in the default
|
||||
location. After adding the compilers, using them is the same
|
||||
@@ -161,12 +107,6 @@ Another option is to manually add the configuration to
|
||||
``compilers.yaml`` as described in :ref:`Compiler configuration
|
||||
<compiler-config>`.
|
||||
|
||||
Before 2024, the directory structure was different::
|
||||
|
||||
spack compiler add /opt/intel/oneapi/compiler/latest/linux/bin/intel64
|
||||
spack compiler add /opt/intel/oneapi/compiler/latest/linux/bin
|
||||
|
||||
|
||||
Libraries
|
||||
---------
|
||||
|
||||
@@ -184,7 +124,7 @@ Using oneAPI Tools Installed by Spack
|
||||
=====================================
|
||||
|
||||
Spack can be a convenient way to install and configure compilers and
|
||||
libraries, even if you do not intend to build a Spack package. If you
|
||||
libaries, even if you do not intend to build a Spack package. If you
|
||||
want to build a Makefile project using Spack-installed oneAPI compilers,
|
||||
then use spack to configure your environment::
|
||||
|
||||
|
@@ -1,13 +1,13 @@
|
||||
.. Copyright 2013-2024 Lawrence Livermore National Security, LLC and other
|
||||
.. Copyright 2013-2022 Lawrence Livermore National Security, LLC and other
|
||||
Spack Project Developers. See the top-level COPYRIGHT file for details.
|
||||
|
||||
SPDX-License-Identifier: (Apache-2.0 OR MIT)
|
||||
|
||||
.. _intelpackage:
|
||||
|
||||
-----
|
||||
Intel
|
||||
-----
|
||||
------------
|
||||
IntelPackage
|
||||
------------
|
||||
|
||||
.. contents::
|
||||
|
||||
@@ -90,7 +90,7 @@ and optimizers do require a paid license. In Spack, they are packaged as:
|
||||
TODO: Confirm and possible change(!) the scope of MPI components (runtime
|
||||
vs. devel) in current (and previous?) *cluster/professional/composer*
|
||||
editions, i.e., presence in downloads, possibly subject to license
|
||||
coverage(!); see `discussion in PR #4300
|
||||
coverage(!); see `disussion in PR #4300
|
||||
<https://github.com/spack/spack/pull/4300#issuecomment-305582898>`_. [NB:
|
||||
An "mpi" subdirectory is not indicative of the full MPI SDK being present
|
||||
(i.e., ``mpicc``, ..., and header files). The directory may just as well
|
||||
@@ -392,12 +392,12 @@ See section
|
||||
:ref:`Configuration Scopes <configuration-scopes>`
|
||||
for an explanation about the different files
|
||||
and section
|
||||
:ref:`Build customization <packages-config>`
|
||||
:ref:`Build customization <build-settings>`
|
||||
for specifics and examples for ``packages.yaml`` files.
|
||||
|
||||
.. If your system administrator did not provide modules for pre-installed Intel
|
||||
tools, you could do well to ask for them, because installing multiple copies
|
||||
of the Intel tools, as is won't to happen once Spack is in the picture, is
|
||||
of the Intel tools, as is wont to happen once Spack is in the picture, is
|
||||
bound to stretch disk space and patience thin. If you *are* the system
|
||||
administrator and are still new to modules, then perhaps it's best to follow
|
||||
the `next section <Installing Intel tools within Spack_>`_ and install the tools
|
||||
@@ -653,7 +653,7 @@ follow `the next section <intel-install-libs_>`_ instead.
|
||||
* If you specified a custom variant (for example ``+vtune``) you may want to add this as your
|
||||
preferred variant in the packages configuration for the ``intel-parallel-studio`` package
|
||||
as described in :ref:`package-preferences`. Otherwise you will have to specify
|
||||
the variant every time ``intel-parallel-studio`` is being used as ``mkl``, ``fftw`` or ``mpi``
|
||||
the variant everytime ``intel-parallel-studio`` is being used as ``mkl``, ``fftw`` or ``mpi``
|
||||
implementation to avoid pulling in a different variant.
|
||||
|
||||
* To set the Intel compilers for default use in Spack, instead of the usual ``%gcc``,
|
||||
@@ -934,9 +934,9 @@ a *virtual* ``mkl`` package is declared in Spack.
|
||||
.. code-block:: python
|
||||
|
||||
# Examples for absolute and conditional dependencies:
|
||||
depends_on("mkl")
|
||||
depends_on("mkl", when="+mkl")
|
||||
depends_on("mkl", when="fftw=mkl")
|
||||
depends_on('mkl')
|
||||
depends_on('mkl', when='+mkl')
|
||||
depends_on('mkl', when='fftw=mkl')
|
||||
|
||||
The ``MKLROOT`` environment variable (part of the documented API) will be set
|
||||
during all stages of client package installation, and is available to both
|
||||
@@ -972,8 +972,8 @@ a *virtual* ``mkl`` package is declared in Spack.
|
||||
def configure_args(self):
|
||||
args = []
|
||||
...
|
||||
args.append("--with-blas=%s" % self.spec["blas"].libs.ld_flags)
|
||||
args.append("--with-lapack=%s" % self.spec["lapack"].libs.ld_flags)
|
||||
args.append('--with-blas=%s' % self.spec['blas'].libs.ld_flags)
|
||||
args.append('--with-lapack=%s' % self.spec['lapack'].libs.ld_flags)
|
||||
...
|
||||
|
||||
.. tip::
|
||||
@@ -989,13 +989,13 @@ a *virtual* ``mkl`` package is declared in Spack.
|
||||
|
||||
.. code-block:: python
|
||||
|
||||
self.spec["blas"].headers.include_flags
|
||||
self.spec['blas'].headers.include_flags
|
||||
|
||||
and to generate linker options (``-L<dir> -llibname ...``), use the same as above,
|
||||
|
||||
.. code-block:: python
|
||||
|
||||
self.spec["blas"].libs.ld_flags
|
||||
self.spec['blas'].libs.ld_flags
|
||||
|
||||
See
|
||||
:ref:`MakefilePackage <makefilepackage>`
|
||||
|
@@ -1,15 +1,15 @@
|
||||
.. Copyright 2013-2024 Lawrence Livermore National Security, LLC and other
|
||||
.. Copyright 2013-2022 Lawrence Livermore National Security, LLC and other
|
||||
Spack Project Developers. See the top-level COPYRIGHT file for details.
|
||||
|
||||
SPDX-License-Identifier: (Apache-2.0 OR MIT)
|
||||
|
||||
.. _luapackage:
|
||||
|
||||
---
|
||||
Lua
|
||||
---
|
||||
------------
|
||||
LuaPackage
|
||||
------------
|
||||
|
||||
The ``Lua`` build-system is a helper for the common case of Lua packages that provide
|
||||
LuaPackage is a helper for the common case of Lua packages that provide
|
||||
a rockspec file. This is not meant to take a rock archive, but to build
|
||||
a source archive or repository that provides a rockspec, which should cover
|
||||
most lua packages. In the case a Lua package builds by Make rather than
|
||||
@@ -19,7 +19,7 @@ luarocks, prefer MakefilePackage.
|
||||
Phases
|
||||
^^^^^^
|
||||
|
||||
The ``LuaBuilder`` and `LuaPackage`` base classes come with the following phases:
|
||||
The ``LuaPackage`` base class comes with the following phases:
|
||||
|
||||
#. ``unpack`` - if using a rock, unpacks the rock and moves into the source directory
|
||||
#. ``preprocess`` - adjust sources or rockspec to fix build
|
||||
@@ -88,7 +88,7 @@ override the ``luarocks_args`` method like so:
|
||||
.. code-block:: python
|
||||
|
||||
def luarocks_args(self):
|
||||
return ["flag1", "flag2"]
|
||||
return ['flag1', 'flag2']
|
||||
|
||||
One common use of this is to override warnings or flags for newer compilers, as in:
|
||||
|
||||
|
@@ -1,13 +1,13 @@
|
||||
.. Copyright 2013-2024 Lawrence Livermore National Security, LLC and other
|
||||
.. Copyright 2013-2022 Lawrence Livermore National Security, LLC and other
|
||||
Spack Project Developers. See the top-level COPYRIGHT file for details.
|
||||
|
||||
SPDX-License-Identifier: (Apache-2.0 OR MIT)
|
||||
|
||||
.. _makefilepackage:
|
||||
|
||||
--------
|
||||
Makefile
|
||||
--------
|
||||
---------------
|
||||
MakefilePackage
|
||||
---------------
|
||||
|
||||
The most primitive build system a package can use is a plain Makefile.
|
||||
Makefiles are simple to write for small projects, but they usually
|
||||
@@ -18,7 +18,7 @@ variables.
|
||||
Phases
|
||||
^^^^^^
|
||||
|
||||
The ``MakefileBuilder`` and ``MakefilePackage`` base classes come with 3 phases:
|
||||
The ``MakefilePackage`` base class comes with 3 phases:
|
||||
|
||||
#. ``edit`` - edit the Makefile
|
||||
#. ``build`` - build the project
|
||||
@@ -59,7 +59,7 @@ using GNU Make, you should add a dependency on ``gmake``:
|
||||
|
||||
.. code-block:: python
|
||||
|
||||
depends_on("gmake", type="build")
|
||||
depends_on('gmake', type='build')
|
||||
|
||||
|
||||
^^^^^^^^^^^^^^^^^^^^^^^^^^
|
||||
@@ -88,13 +88,13 @@ command-line. However, Makefiles that use ``?=`` for assignment honor
|
||||
environment variables. Since Spack already sets ``CC``, ``CXX``, ``F77``,
|
||||
and ``FC``, you won't need to worry about setting these variables. If
|
||||
there are any other variables you need to set, you can do this in the
|
||||
``setup_build_environment`` method:
|
||||
``edit`` method:
|
||||
|
||||
.. code-block:: python
|
||||
|
||||
def setup_build_environment(self, env):
|
||||
env.set("PREFIX", prefix)
|
||||
env.set("BLASLIB", spec["blas"].libs.ld_flags)
|
||||
def edit(self, spec, prefix):
|
||||
env['PREFIX'] = prefix
|
||||
env['BLASLIB'] = spec['blas'].libs.ld_flags
|
||||
|
||||
|
||||
`cbench <https://github.com/spack/spack/blob/develop/var/spack/repos/builtin/packages/cbench/package.py>`_
|
||||
@@ -113,7 +113,7 @@ you can do this like so:
|
||||
|
||||
.. code-block:: python
|
||||
|
||||
build_targets = ["CC=cc"]
|
||||
build_targets = ['CC=cc']
|
||||
|
||||
|
||||
If you do need access to the spec, you can create a property like so:
|
||||
@@ -125,8 +125,8 @@ If you do need access to the spec, you can create a property like so:
|
||||
spec = self.spec
|
||||
|
||||
return [
|
||||
"CC=cc",
|
||||
f"BLASLIB={spec['blas'].libs.ld_flags}",
|
||||
'CC=cc',
|
||||
'BLASLIB={0}'.format(spec['blas'].libs.ld_flags),
|
||||
]
|
||||
|
||||
|
||||
@@ -140,17 +140,17 @@ Edit Makefile
|
||||
Some Makefiles are just plain stubborn and will ignore command-line
|
||||
variables. The only way to ensure that these packages build correctly
|
||||
is to directly edit the Makefile. Spack provides a ``FileFilter`` class
|
||||
and a ``filter`` method to help with this. For example:
|
||||
and a ``filter_file`` method to help with this. For example:
|
||||
|
||||
.. code-block:: python
|
||||
|
||||
def edit(self, spec, prefix):
|
||||
makefile = FileFilter("Makefile")
|
||||
makefile = FileFilter('Makefile')
|
||||
|
||||
makefile.filter(r"^\s*CC\s*=.*", f"CC = {spack_cc}")
|
||||
makefile.filter(r"^\s*CXX\s*=.*", f"CXX = {spack_cxx}")
|
||||
makefile.filter(r"^\s*F77\s*=.*", f"F77 = {spack_f77}")
|
||||
makefile.filter(r"^\s*FC\s*=.*", f"FC = {spack_fc}")
|
||||
makefile.filter(r'^\s*CC\s*=.*', 'CC = ' + spack_cc)
|
||||
makefile.filter(r'^\s*CXX\s*=.*', 'CXX = ' + spack_cxx)
|
||||
makefile.filter(r'^\s*F77\s*=.*', 'F77 = ' + spack_f77)
|
||||
makefile.filter(r'^\s*FC\s*=.*', 'FC = ' + spack_fc)
|
||||
|
||||
|
||||
`stream <https://github.com/spack/spack/blob/develop/var/spack/repos/builtin/packages/stream/package.py>`_
|
||||
@@ -181,16 +181,16 @@ well for storing variables:
|
||||
|
||||
def edit(self, spec, prefix):
|
||||
config = {
|
||||
"CC": "cc",
|
||||
"MAKE": "make",
|
||||
'CC': 'cc',
|
||||
'MAKE': 'make',
|
||||
}
|
||||
|
||||
if spec.satisfies("+blas"):
|
||||
config["BLAS_LIBS"] = spec["blas"].libs.joined()
|
||||
if '+blas' in spec:
|
||||
config['BLAS_LIBS'] = spec['blas'].libs.joined()
|
||||
|
||||
with open("make.inc", "w") as inc:
|
||||
with open('make.inc', 'w') as inc:
|
||||
for key in config:
|
||||
inc.write(f"{key} = {config[key]}\n")
|
||||
inc.write('{0} = {1}\n'.format(key, config[key]))
|
||||
|
||||
|
||||
`elk <https://github.com/spack/spack/blob/develop/var/spack/repos/builtin/packages/elk/package.py>`_
|
||||
@@ -204,14 +204,14 @@ them in a list:
|
||||
|
||||
def edit(self, spec, prefix):
|
||||
config = [
|
||||
f"INSTALL_DIR = {prefix}",
|
||||
"INCLUDE_DIR = $(INSTALL_DIR)/include",
|
||||
"LIBRARY_DIR = $(INSTALL_DIR)/lib",
|
||||
'INSTALL_DIR = {0}'.format(prefix),
|
||||
'INCLUDE_DIR = $(INSTALL_DIR)/include',
|
||||
'LIBRARY_DIR = $(INSTALL_DIR)/lib',
|
||||
]
|
||||
|
||||
with open("make.inc", "w") as inc:
|
||||
with open('make.inc', 'w') as inc:
|
||||
for var in config:
|
||||
inc.write(f"{var}\n")
|
||||
inc.write('{0}\n'.format(var))
|
||||
|
||||
|
||||
`hpl <https://github.com/spack/spack/blob/develop/var/spack/repos/builtin/packages/hpl/package.py>`_
|
||||
@@ -284,7 +284,7 @@ can tell Spack where to locate it like so:
|
||||
|
||||
.. code-block:: python
|
||||
|
||||
build_directory = "src"
|
||||
build_directory = 'src'
|
||||
|
||||
|
||||
^^^^^^^^^^^^^^^^^^^
|
||||
@@ -299,8 +299,8 @@ install the package:
|
||||
|
||||
def install(self, spec, prefix):
|
||||
mkdir(prefix.bin)
|
||||
install("foo", prefix.bin)
|
||||
install_tree("lib", prefix.lib)
|
||||
install('foo', prefix.bin)
|
||||
install_tree('lib', prefix.lib)
|
||||
|
||||
|
||||
^^^^^^^^^^^^^^^^^^^^^^
|
||||
|
@@ -1,13 +1,13 @@
|
||||
.. Copyright 2013-2024 Lawrence Livermore National Security, LLC and other
|
||||
.. Copyright 2013-2022 Lawrence Livermore National Security, LLC and other
|
||||
Spack Project Developers. See the top-level COPYRIGHT file for details.
|
||||
|
||||
SPDX-License-Identifier: (Apache-2.0 OR MIT)
|
||||
|
||||
.. _mavenpackage:
|
||||
|
||||
-----
|
||||
Maven
|
||||
-----
|
||||
------------
|
||||
MavenPackage
|
||||
------------
|
||||
|
||||
Apache Maven is a general-purpose build system that does not rely
|
||||
on Makefiles to build software. It is designed for building and
|
||||
@@ -17,7 +17,7 @@ managing and Java-based project.
|
||||
Phases
|
||||
^^^^^^
|
||||
|
||||
The ``MavenBuilder`` and ``MavenPackage`` base classes come with the following phases:
|
||||
The ``MavenPackage`` base class comes with the following phases:
|
||||
|
||||
#. ``build`` - compile code and package into a JAR file
|
||||
#. ``install`` - copy to installation prefix
|
||||
@@ -48,8 +48,8 @@ class automatically adds the following dependencies:
|
||||
|
||||
.. code-block:: python
|
||||
|
||||
depends_on("java", type=("build", "run"))
|
||||
depends_on("maven", type="build")
|
||||
depends_on('java', type=('build', 'run'))
|
||||
depends_on('maven', type='build')
|
||||
|
||||
|
||||
In the ``pom.xml`` file, you may see sections like:
|
||||
@@ -72,8 +72,8 @@ should add:
|
||||
|
||||
.. code-block:: python
|
||||
|
||||
depends_on("java@7:", type="build")
|
||||
depends_on("maven@3.5.4:", type="build")
|
||||
depends_on('java@7:', type='build')
|
||||
depends_on('maven@3.5.4:', type='build')
|
||||
|
||||
|
||||
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
|
||||
@@ -88,9 +88,9 @@ the build phase. For example:
|
||||
|
||||
def build_args(self):
|
||||
return [
|
||||
"-Pdist,native",
|
||||
"-Dtar",
|
||||
"-Dmaven.javadoc.skip=true"
|
||||
'-Pdist,native',
|
||||
'-Dtar',
|
||||
'-Dmaven.javadoc.skip=true'
|
||||
]
|
||||
|
||||
|
||||
|
@@ -1,13 +1,13 @@
|
||||
.. Copyright 2013-2024 Lawrence Livermore National Security, LLC and other
|
||||
.. Copyright 2013-2022 Lawrence Livermore National Security, LLC and other
|
||||
Spack Project Developers. See the top-level COPYRIGHT file for details.
|
||||
|
||||
SPDX-License-Identifier: (Apache-2.0 OR MIT)
|
||||
|
||||
.. _mesonpackage:
|
||||
|
||||
-----
|
||||
Meson
|
||||
-----
|
||||
------------
|
||||
MesonPackage
|
||||
------------
|
||||
|
||||
Much like Autotools and CMake, Meson is a build system. But it is
|
||||
meant to be both fast and as user friendly as possible. GNOME's goal
|
||||
@@ -17,7 +17,7 @@ is to port modules to use the Meson build system.
|
||||
Phases
|
||||
^^^^^^
|
||||
|
||||
The ``MesonBuilder`` and ``MesonPackage`` base classes come with the following phases:
|
||||
The ``MesonPackage`` base class comes with the following phases:
|
||||
|
||||
#. ``meson`` - generate ninja files
|
||||
#. ``build`` - build the project
|
||||
@@ -86,8 +86,8 @@ the ``MesonPackage`` base class already contains:
|
||||
|
||||
.. code-block:: python
|
||||
|
||||
depends_on("meson", type="build")
|
||||
depends_on("ninja", type="build")
|
||||
depends_on('meson', type='build')
|
||||
depends_on('ninja', type='build')
|
||||
|
||||
|
||||
If you need to specify a particular version requirement, you can
|
||||
@@ -95,8 +95,8 @@ override this in your package:
|
||||
|
||||
.. code-block:: python
|
||||
|
||||
depends_on("meson@0.43.0:", type="build")
|
||||
depends_on("ninja", type="build")
|
||||
depends_on('meson@0.43.0:', type='build')
|
||||
depends_on('ninja', type='build')
|
||||
|
||||
|
||||
^^^^^^^^^^^^^^^^^^^
|
||||
@@ -121,7 +121,7 @@ override the ``meson_args`` method like so:
|
||||
.. code-block:: python
|
||||
|
||||
def meson_args(self):
|
||||
return ["--warnlevel=3"]
|
||||
return ['--warnlevel=3']
|
||||
|
||||
|
||||
This method can be used to pass flags as well as variables.
|
||||
|
350
lib/spack/docs/build_systems/multiplepackage.rst
Normal file
350
lib/spack/docs/build_systems/multiplepackage.rst
Normal file
@@ -0,0 +1,350 @@
|
||||
.. Copyright 2013-2022 Lawrence Livermore National Security, LLC and other
|
||||
Spack Project Developers. See the top-level COPYRIGHT file for details.
|
||||
|
||||
SPDX-License-Identifier: (Apache-2.0 OR MIT)
|
||||
|
||||
.. _multiplepackage:
|
||||
|
||||
----------------------
|
||||
Multiple Build Systems
|
||||
----------------------
|
||||
|
||||
Quite frequently, a package will change build systems from one version to the
|
||||
next. For example, a small project that once used a single Makefile to build
|
||||
may now require Autotools to handle the increased number of files that need to
|
||||
be compiled. Or, a package that once used Autotools may switch to CMake for
|
||||
Windows support. In this case, it becomes a bit more challenging to write a
|
||||
single build recipe for this package in Spack.
|
||||
|
||||
There are several ways that this can be handled in Spack:
|
||||
|
||||
#. Subclass the new build system, and override phases as needed (preferred)
|
||||
#. Subclass ``Package`` and implement ``install`` as needed
|
||||
#. Create separate ``*-cmake``, ``*-autotools``, etc. packages for each build system
|
||||
#. Rename the old package to ``*-legacy`` and create a new package
|
||||
#. Move the old package to a ``legacy`` repository and create a new package
|
||||
#. Drop older versions that only support the older build system
|
||||
|
||||
Of these options, 1 is preferred, and will be demonstrated in this
|
||||
documentation. Options 3-5 have issues with concretization, so shouldn't be
|
||||
used. Options 4-5 also don't support more than two build systems. Option 6 only
|
||||
works if the old versions are no longer needed. Option 1 is preferred over 2
|
||||
because it makes it easier to drop the old build system entirely.
|
||||
|
||||
The exact syntax of the package depends on which build systems you need to
|
||||
support. Below are a couple of common examples.
|
||||
|
||||
^^^^^^^^^^^^^^^^^^^^^
|
||||
Makefile -> Autotools
|
||||
^^^^^^^^^^^^^^^^^^^^^
|
||||
|
||||
Let's say we have the following package:
|
||||
|
||||
.. code-block:: python
|
||||
|
||||
class Foo(MakefilePackage):
|
||||
version("1.2.0", sha256="...")
|
||||
|
||||
def edit(self, spec, prefix):
|
||||
filter_file("CC=", "CC=" + spack_cc, "Makefile")
|
||||
|
||||
def install(self, spec, prefix):
|
||||
install_tree(".", prefix)
|
||||
|
||||
|
||||
The package subclasses from :ref:`makefilepackage`, which has three phases:
|
||||
|
||||
#. ``edit`` (does nothing by default)
|
||||
#. ``build`` (runs ``make`` by default)
|
||||
#. ``install`` (runs ``make install`` by default)
|
||||
|
||||
In this case, the ``install`` phase needed to be overridden because the
|
||||
Makefile did not have an install target. We also modify the Makefile to use
|
||||
Spack's compiler wrappers. The default ``build`` phase is not changed.
|
||||
|
||||
Starting with version 1.3.0, we want to use Autotools to build instead.
|
||||
:ref:`autotoolspackage` has four phases:
|
||||
|
||||
#. ``autoreconf`` (does not if a configure script already exists)
|
||||
#. ``configure`` (runs ``./configure --prefix=...`` by default)
|
||||
#. ``build`` (runs ``make`` by default)
|
||||
#. ``install`` (runs ``make install`` by default)
|
||||
|
||||
If the only version we need to support is 1.3.0, the package would look as
|
||||
simple as:
|
||||
|
||||
.. code-block:: python
|
||||
|
||||
class Foo(AutotoolsPackage):
|
||||
version("1.3.0", sha256="...")
|
||||
|
||||
def configure_args(self):
|
||||
return ["--enable-shared"]
|
||||
|
||||
|
||||
In this case, we use the default methods for each phase and only override
|
||||
``configure_args`` to specify additional flags to pass to ``./configure``.
|
||||
|
||||
If we wanted to write a single package that supports both versions 1.2.0 and
|
||||
1.3.0, it would look something like:
|
||||
|
||||
.. code-block:: python
|
||||
|
||||
class Foo(AutotoolsPackage):
|
||||
version("1.3.0", sha256="...")
|
||||
version("1.2.0", sha256="...", deprecated=True)
|
||||
|
||||
def configure_args(self):
|
||||
return ["--enable-shared"]
|
||||
|
||||
# Remove the following once version 1.2.0 is dropped
|
||||
@when("@:1.2")
|
||||
def patch(self):
|
||||
filter_file("CC=", "CC=" + spack_cc, "Makefile")
|
||||
|
||||
@when("@:1.2")
|
||||
def autoreconf(self, spec, prefix):
|
||||
pass
|
||||
|
||||
@when("@:1.2")
|
||||
def configure(self, spec, prefix):
|
||||
pass
|
||||
|
||||
@when("@:1.2")
|
||||
def install(self, spec, prefix):
|
||||
install_tree(".", prefix)
|
||||
|
||||
|
||||
There are a few interesting things to note here:
|
||||
|
||||
* We added ``deprecated=True`` to version 1.2.0. This signifies that version
|
||||
1.2.0 is deprecated and shouldn't be used. However, if a user still relies
|
||||
on version 1.2.0, it's still there and builds just fine.
|
||||
* We moved the contents of the ``edit`` phase to the ``patch`` function. Since
|
||||
``AutotoolsPackage`` doesn't have an ``edit`` phase, the only way for this
|
||||
step to be executed is to move it to the ``patch`` function, which always
|
||||
gets run.
|
||||
* The ``autoreconf`` and ``configure`` phases become no-ops. Since the old
|
||||
Makefile-based build system doesn't use these, we ignore these phases when
|
||||
building ``foo@1.2.0``.
|
||||
* The ``@when`` decorator is used to override these phases only for older
|
||||
versions. The default methods are used for ``foo@1.3:``.
|
||||
|
||||
Once a new Spack release comes out, version 1.2.0 and everything below the
|
||||
comment can be safely deleted. The result is the same as if we had written a
|
||||
package for version 1.3.0 from scratch.
|
||||
|
||||
^^^^^^^^^^^^^^^^^^
|
||||
Autotools -> CMake
|
||||
^^^^^^^^^^^^^^^^^^
|
||||
|
||||
Let's say we have the following package:
|
||||
|
||||
.. code-block:: python
|
||||
|
||||
class Bar(AutotoolsPackage):
|
||||
version("1.2.0", sha256="...")
|
||||
|
||||
def configure_args(self):
|
||||
return ["--enable-shared"]
|
||||
|
||||
|
||||
The package subclasses from :ref:`autotoolspackage`, which has four phases:
|
||||
|
||||
#. ``autoreconf`` (does not if a configure script already exists)
|
||||
#. ``configure`` (runs ``./configure --prefix=...`` by default)
|
||||
#. ``build`` (runs ``make`` by default)
|
||||
#. ``install`` (runs ``make install`` by default)
|
||||
|
||||
In this case, we use the default methods for each phase and only override
|
||||
``configure_args`` to specify additional flags to pass to ``./configure``.
|
||||
|
||||
Starting with version 1.3.0, we want to use CMake to build instead.
|
||||
:ref:`cmakepackage` has three phases:
|
||||
|
||||
#. ``cmake`` (runs ``cmake ...`` by default)
|
||||
#. ``build`` (runs ``make`` by default)
|
||||
#. ``install`` (runs ``make install`` by default)
|
||||
|
||||
If the only version we need to support is 1.3.0, the package would look as
|
||||
simple as:
|
||||
|
||||
.. code-block:: python
|
||||
|
||||
class Bar(CMakePackage):
|
||||
version("1.3.0", sha256="...")
|
||||
|
||||
def cmake_args(self):
|
||||
return [self.define("BUILD_SHARED_LIBS", True)]
|
||||
|
||||
|
||||
In this case, we use the default methods for each phase and only override
|
||||
``cmake_args`` to specify additional flags to pass to ``cmake``.
|
||||
|
||||
If we wanted to write a single package that supports both versions 1.2.0 and
|
||||
1.3.0, it would look something like:
|
||||
|
||||
.. code-block:: python
|
||||
|
||||
class Bar(CMakePackage):
|
||||
version("1.3.0", sha256="...")
|
||||
version("1.2.0", sha256="...", deprecated=True)
|
||||
|
||||
def cmake_args(self):
|
||||
return [self.define("BUILD_SHARED_LIBS", True)]
|
||||
|
||||
# Remove the following once version 1.2.0 is dropped
|
||||
def configure_args(self):
|
||||
return ["--enable-shared"]
|
||||
|
||||
@when("@:1.2")
|
||||
def cmake(self, spec, prefix):
|
||||
configure("--prefix=" + prefix, *self.configure_args())
|
||||
|
||||
|
||||
There are a few interesting things to note here:
|
||||
|
||||
* We added ``deprecated=True`` to version 1.2.0. This signifies that version
|
||||
1.2.0 is deprecated and shouldn't be used. However, if a user still relies
|
||||
on version 1.2.0, it's still there and builds just fine.
|
||||
* Since CMake and Autotools are so similar, we only need to override the
|
||||
``cmake`` phase, we can use the default ``build`` and ``install`` phases.
|
||||
* We override ``cmake`` to run ``./configure`` for older versions.
|
||||
``configure_args`` remains the same.
|
||||
* The ``@when`` decorator is used to override these phases only for older
|
||||
versions. The default methods are used for ``bar@1.3:``.
|
||||
|
||||
Once a new Spack release comes out, version 1.2.0 and everything below the
|
||||
comment can be safely deleted. The result is the same as if we had written a
|
||||
package for version 1.3.0 from scratch.
|
||||
|
||||
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
|
||||
Multiple build systems for the same version
|
||||
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
|
||||
|
||||
During the transition from one build system to another, developers often
|
||||
support multiple build systems at the same time. Spack can only use a single
|
||||
build system for a single version. To decide which build system to use for a
|
||||
particular version, take the following things into account:
|
||||
|
||||
1. If the developers explicitly state that one build system is preferred over
|
||||
another, use that one.
|
||||
2. If one build system is considered "experimental" while another is considered
|
||||
"stable", use the stable build system.
|
||||
3. Otherwise, use the newer build system.
|
||||
|
||||
The developer preference for which build system to use can change over time as
|
||||
a newer build system becomes stable/recommended.
|
||||
|
||||
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
|
||||
Dropping support for old build systems
|
||||
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
|
||||
|
||||
When older versions of a package don't support a newer build system, it can be
|
||||
tempting to simply delete them from a package. This significantly reduces
|
||||
package complexity and makes the build recipe much easier to maintain. However,
|
||||
other packages or Spack users may rely on these older versions. The recommended
|
||||
approach is to first support both build systems (as demonstrated above),
|
||||
:ref:`deprecate <deprecate>` versions that rely on the old build system, and
|
||||
remove those versions and any phases that needed to be overridden in the next
|
||||
Spack release.
|
||||
|
||||
^^^^^^^^^^^^^^^^^^^^^^^^^^^
|
||||
Three or more build systems
|
||||
^^^^^^^^^^^^^^^^^^^^^^^^^^^
|
||||
|
||||
In rare cases, a package may change build systems multiple times. For example,
|
||||
a package may start with Makefiles, then switch to Autotools, then switch to
|
||||
CMake. The same logic used above can be extended to any number of build systems.
|
||||
For example:
|
||||
|
||||
.. code-block:: python
|
||||
|
||||
class Baz(CMakePackage):
|
||||
version("1.4.0", sha256="...") # CMake
|
||||
version("1.3.0", sha256="...") # Autotools
|
||||
version("1.2.0", sha256="...") # Makefile
|
||||
|
||||
def cmake_args(self):
|
||||
return [self.define("BUILD_SHARED_LIBS", True)]
|
||||
|
||||
# Remove the following once version 1.3.0 is dropped
|
||||
def configure_args(self):
|
||||
return ["--enable-shared"]
|
||||
|
||||
@when("@1.3")
|
||||
def cmake(self, spec, prefix):
|
||||
configure("--prefix=" + prefix, *self.configure_args())
|
||||
|
||||
# Remove the following once version 1.2.0 is dropped
|
||||
@when("@:1.2")
|
||||
def patch(self):
|
||||
filter_file("CC=", "CC=" + spack_cc, "Makefile")
|
||||
|
||||
@when("@:1.2")
|
||||
def cmake(self, spec, prefix):
|
||||
pass
|
||||
|
||||
@when("@:1.2")
|
||||
def install(self, spec, prefix):
|
||||
install_tree(".", prefix)
|
||||
|
||||
|
||||
^^^^^^^^^^^^^^^^^^^
|
||||
Additional examples
|
||||
^^^^^^^^^^^^^^^^^^^
|
||||
|
||||
When writing new packages, it often helps to see examples of existing packages.
|
||||
Here is an incomplete list of existing Spack packages that have changed build
|
||||
systems before:
|
||||
|
||||
================ ===================== ================
|
||||
Package Previous Build System New Build System
|
||||
================ ===================== ================
|
||||
amber custom CMake
|
||||
arpack-ng Autotools CMake
|
||||
atk Autotools Meson
|
||||
blast None Autotools
|
||||
dyninst Autotools CMake
|
||||
evtgen Autotools CMake
|
||||
fish Autotools CMake
|
||||
gdk-pixbuf Autotools Meson
|
||||
glib Autotools Meson
|
||||
glog Autotools CMake
|
||||
gmt Autotools CMake
|
||||
gtkplus Autotools Meson
|
||||
hpl Makefile Autotools
|
||||
interproscan Perl Maven
|
||||
jasper Autotools CMake
|
||||
kahip SCons CMake
|
||||
kokkos Makefile CMake
|
||||
kokkos-kernels Makefile CMake
|
||||
leveldb Makefile CMake
|
||||
libdrm Autotools Meson
|
||||
libjpeg-turbo Autotools CMake
|
||||
mesa Autotools Meson
|
||||
metis None CMake
|
||||
mpifileutils Autotools CMake
|
||||
muparser Autotools CMake
|
||||
mxnet Makefile CMake
|
||||
nest Autotools CMake
|
||||
neuron Autotools CMake
|
||||
nsimd CMake nsconfig
|
||||
opennurbs Makefile CMake
|
||||
optional-lite None CMake
|
||||
plasma Makefile CMake
|
||||
preseq Makefile Autotools
|
||||
protobuf Autotools CMake
|
||||
py-pygobject Autotools Python
|
||||
singularity Autotools Makefile
|
||||
span-lite None CMake
|
||||
ssht Makefile CMake
|
||||
string-view-lite None CMake
|
||||
superlu Makefile CMake
|
||||
superlu-dist Makefile CMake
|
||||
uncrustify Autotools CMake
|
||||
================ ===================== ================
|
||||
|
||||
Packages that support multiple build systems can be a bit confusing to write.
|
||||
Don't hesitate to open an issue or draft pull request and ask for advice from
|
||||
other Spack developers!
|
@@ -1,13 +1,13 @@
|
||||
.. Copyright 2013-2024 Lawrence Livermore National Security, LLC and other
|
||||
.. Copyright 2013-2022 Lawrence Livermore National Security, LLC and other
|
||||
Spack Project Developers. See the top-level COPYRIGHT file for details.
|
||||
|
||||
SPDX-License-Identifier: (Apache-2.0 OR MIT)
|
||||
|
||||
.. _octavepackage:
|
||||
|
||||
------
|
||||
Octave
|
||||
------
|
||||
-------------
|
||||
OctavePackage
|
||||
-------------
|
||||
|
||||
Octave has its own build system for installing packages.
|
||||
|
||||
@@ -15,7 +15,7 @@ Octave has its own build system for installing packages.
|
||||
Phases
|
||||
^^^^^^
|
||||
|
||||
The ``OctaveBuilder`` and ``OctavePackage`` base classes have a single phase:
|
||||
The ``OctavePackage`` base class has a single phase:
|
||||
|
||||
#. ``install`` - install the package
|
||||
|
||||
|
@@ -1,13 +1,13 @@
|
||||
.. Copyright 2013-2024 Lawrence Livermore National Security, LLC and other
|
||||
.. Copyright 2013-2022 Lawrence Livermore National Security, LLC and other
|
||||
Spack Project Developers. See the top-level COPYRIGHT file for details.
|
||||
|
||||
SPDX-License-Identifier: (Apache-2.0 OR MIT)
|
||||
|
||||
.. _perlpackage:
|
||||
|
||||
----
|
||||
Perl
|
||||
----
|
||||
-----------
|
||||
PerlPackage
|
||||
-----------
|
||||
|
||||
Much like Octave, Perl has its own language-specific
|
||||
build system.
|
||||
@@ -16,7 +16,7 @@ build system.
|
||||
Phases
|
||||
^^^^^^
|
||||
|
||||
The ``PerlBuilder`` and ``PerlPackage`` base classes come with 3 phases that can be overridden:
|
||||
The ``PerlPackage`` base class comes with 3 phases that can be overridden:
|
||||
|
||||
#. ``configure`` - configure the package
|
||||
#. ``build`` - build the package
|
||||
@@ -118,7 +118,7 @@ so ``PerlPackage`` contains:
|
||||
|
||||
.. code-block:: python
|
||||
|
||||
extends("perl")
|
||||
extends('perl')
|
||||
|
||||
|
||||
If your package requires a specific version of Perl, you should
|
||||
@@ -132,14 +132,14 @@ properly. If your package uses ``Makefile.PL`` to build, add:
|
||||
|
||||
.. code-block:: python
|
||||
|
||||
depends_on("perl-extutils-makemaker", type="build")
|
||||
depends_on('perl-extutils-makemaker', type='build')
|
||||
|
||||
|
||||
If your package uses ``Build.PL`` to build, add:
|
||||
|
||||
.. code-block:: python
|
||||
|
||||
depends_on("perl-module-build", type="build")
|
||||
depends_on('perl-module-build', type='build')
|
||||
|
||||
|
||||
^^^^^^^^^^^^^^^^^
|
||||
@@ -165,80 +165,14 @@ arguments to ``Makefile.PL`` or ``Build.PL`` by overriding
|
||||
.. code-block:: python
|
||||
|
||||
def configure_args(self):
|
||||
expat = self.spec["expat"].prefix
|
||||
expat = self.spec['expat'].prefix
|
||||
|
||||
return [
|
||||
"EXPATLIBPATH={0}".format(expat.lib),
|
||||
"EXPATINCPATH={0}".format(expat.include),
|
||||
'EXPATLIBPATH={0}'.format(expat.lib),
|
||||
'EXPATINCPATH={0}'.format(expat.include),
|
||||
]
|
||||
|
||||
|
||||
^^^^^^^
|
||||
Testing
|
||||
^^^^^^^
|
||||
|
||||
``PerlPackage`` provides a simple stand-alone test of the successfully
|
||||
installed package to confirm that installed perl module(s) can be used.
|
||||
These tests can be performed any time after the installation using
|
||||
``spack -v test run``. (For more information on the command, see
|
||||
:ref:`cmd-spack-test-run`.)
|
||||
|
||||
The base class automatically detects perl modules based on the presence
|
||||
of ``*.pm`` files under the package's library directory. For example,
|
||||
the files under ``perl-bignum``'s perl library are:
|
||||
|
||||
.. code-block:: console
|
||||
|
||||
$ find . -name "*.pm"
|
||||
./bigfloat.pm
|
||||
./bigrat.pm
|
||||
./Math/BigFloat/Trace.pm
|
||||
./Math/BigInt/Trace.pm
|
||||
./Math/BigRat/Trace.pm
|
||||
./bigint.pm
|
||||
./bignum.pm
|
||||
|
||||
|
||||
which results in the package having the ``use_modules`` property containing:
|
||||
|
||||
.. code-block:: python
|
||||
|
||||
use_modules = [
|
||||
"bigfloat",
|
||||
"bigrat",
|
||||
"Math::BigFloat::Trace",
|
||||
"Math::BigInt::Trace",
|
||||
"Math::BigRat::Trace",
|
||||
"bigint",
|
||||
"bignum",
|
||||
]
|
||||
|
||||
.. note::
|
||||
|
||||
This list can often be used to catch missing dependencies.
|
||||
|
||||
If the list is somehow wrong, you can provide the names of the modules
|
||||
yourself by overriding ``use_modules`` like so:
|
||||
|
||||
.. code-block:: python
|
||||
|
||||
use_modules = ["bigfloat", "bigrat", "bigint", "bignum"]
|
||||
|
||||
If you only want a subset of the automatically detected modules to be
|
||||
tested, you could instead define the ``skip_modules`` property on the
|
||||
package. So, instead of overriding ``use_modules`` as shown above, you
|
||||
could define the following:
|
||||
|
||||
.. code-block:: python
|
||||
|
||||
skip_modules = [
|
||||
"Math::BigFloat::Trace",
|
||||
"Math::BigInt::Trace",
|
||||
"Math::BigRat::Trace",
|
||||
]
|
||||
|
||||
for the same use tests.
|
||||
|
||||
^^^^^^^^^^^^^^^^^^^^^
|
||||
Alternatives to Spack
|
||||
^^^^^^^^^^^^^^^^^^^^^
|
||||
|
@@ -1,13 +1,13 @@
|
||||
.. Copyright 2013-2024 Lawrence Livermore National Security, LLC and other
|
||||
.. Copyright 2013-2022 Lawrence Livermore National Security, LLC and other
|
||||
Spack Project Developers. See the top-level COPYRIGHT file for details.
|
||||
|
||||
SPDX-License-Identifier: (Apache-2.0 OR MIT)
|
||||
|
||||
.. _pythonpackage:
|
||||
|
||||
------
|
||||
Python
|
||||
------
|
||||
-------------
|
||||
PythonPackage
|
||||
-------------
|
||||
|
||||
Python packages and modules have their own special build system. This
|
||||
documentation covers everything you'll need to know in order to write
|
||||
@@ -152,16 +152,16 @@ set. Once set, ``pypi`` will be used to define the ``homepage``,
|
||||
|
||||
.. code-block:: python
|
||||
|
||||
homepage = "https://pypi.org/project/setuptools/"
|
||||
url = "https://pypi.org/packages/source/s/setuptools/setuptools-49.2.0.zip"
|
||||
list_url = "https://pypi.org/simple/setuptools/"
|
||||
homepage = 'https://pypi.org/project/setuptools/'
|
||||
url = 'https://pypi.org/packages/source/s/setuptools/setuptools-49.2.0.zip'
|
||||
list_url = 'https://pypi.org/simple/setuptools/'
|
||||
|
||||
|
||||
is equivalent to:
|
||||
|
||||
.. code-block:: python
|
||||
|
||||
pypi = "setuptools/setuptools-49.2.0.zip"
|
||||
pypi = 'setuptools/setuptools-49.2.0.zip'
|
||||
|
||||
|
||||
If a package has a different homepage listed on PyPI, you can
|
||||
@@ -208,7 +208,7 @@ dependencies to your package:
|
||||
|
||||
.. code-block:: python
|
||||
|
||||
depends_on("py-setuptools@42:", type="build")
|
||||
depends_on('py-setuptools@42:', type='build')
|
||||
|
||||
|
||||
Note that ``py-wheel`` is already listed as a build dependency in the
|
||||
@@ -232,7 +232,7 @@ Look for dependencies under the following keys:
|
||||
* ``dependencies`` under ``[project]``
|
||||
|
||||
These packages are required for building and installation. You can
|
||||
add them with ``type=("build", "run")``.
|
||||
add them with ``type=('build', 'run')``.
|
||||
|
||||
* ``[project.optional-dependencies]``
|
||||
|
||||
@@ -279,12 +279,12 @@ distutils library, and has almost the exact same API. In addition to
|
||||
* ``setup_requires``
|
||||
|
||||
These packages are usually only needed at build-time, so you can
|
||||
add them with ``type="build"``.
|
||||
add them with ``type='build'``.
|
||||
|
||||
* ``install_requires``
|
||||
|
||||
These packages are required for building and installation. You can
|
||||
add them with ``type=("build", "run")``.
|
||||
add them with ``type=('build', 'run')``.
|
||||
|
||||
* ``extras_require``
|
||||
|
||||
@@ -296,7 +296,7 @@ distutils library, and has almost the exact same API. In addition to
|
||||
|
||||
These are packages that are required to run the unit tests for the
|
||||
package. These dependencies can be specified using the
|
||||
``type="test"`` dependency type. However, the PyPI tarballs rarely
|
||||
``type='test'`` dependency type. However, the PyPI tarballs rarely
|
||||
contain unit tests, so there is usually no reason to add these.
|
||||
|
||||
See https://setuptools.pypa.io/en/latest/userguide/dependency_management.html
|
||||
@@ -321,7 +321,7 @@ older versions of flit may use the following keys:
|
||||
* ``requires`` under ``[tool.flit.metadata]``
|
||||
|
||||
These packages are required for building and installation. You can
|
||||
add them with ``type=("build", "run")``.
|
||||
add them with ``type=('build', 'run')``.
|
||||
|
||||
* ``[tool.flit.metadata.requires-extra]``
|
||||
|
||||
@@ -366,7 +366,7 @@ If the ``pyproject.toml`` lists ``mesonpy`` as the ``build-backend``,
|
||||
it uses the meson build system. Meson uses the default
|
||||
``pyproject.toml`` keys to list dependencies.
|
||||
|
||||
See https://meson-python.readthedocs.io/en/latest/tutorials/introduction.html
|
||||
See https://meson-python.readthedocs.io/en/latest/usage/start.html
|
||||
for more information.
|
||||
|
||||
"""
|
||||
@@ -434,12 +434,12 @@ the BLAS/LAPACK library you want pkg-config to search for:
|
||||
|
||||
.. code-block:: python
|
||||
|
||||
depends_on("py-pip@22.1:", type="build")
|
||||
depends_on('py-pip@22.1:', type='build')
|
||||
|
||||
def config_settings(self, spec, prefix):
|
||||
return {
|
||||
"blas": spec["blas"].libs.names[0],
|
||||
"lapack": spec["lapack"].libs.names[0],
|
||||
'blas': spec['blas'].libs.names[0],
|
||||
'lapack': spec['lapack'].libs.names[0],
|
||||
}
|
||||
|
||||
|
||||
@@ -463,10 +463,10 @@ has an optional dependency on ``libyaml`` that can be enabled like so:
|
||||
|
||||
def global_options(self, spec, prefix):
|
||||
options = []
|
||||
if spec.satisfies("+libyaml"):
|
||||
options.append("--with-libyaml")
|
||||
if '+libyaml' in spec:
|
||||
options.append('--with-libyaml')
|
||||
else:
|
||||
options.append("--without-libyaml")
|
||||
options.append('--without-libyaml')
|
||||
return options
|
||||
|
||||
|
||||
@@ -492,10 +492,10 @@ allows you to specify the directories to search for ``libyaml``:
|
||||
|
||||
def install_options(self, spec, prefix):
|
||||
options = []
|
||||
if spec.satisfies("+libyaml"):
|
||||
if '+libyaml' in spec:
|
||||
options.extend([
|
||||
spec["libyaml"].libs.search_flags,
|
||||
spec["libyaml"].headers.include_flags,
|
||||
spec['libyaml'].libs.search_flags,
|
||||
spec['libyaml'].headers.include_flags,
|
||||
])
|
||||
return options
|
||||
|
||||
@@ -556,7 +556,7 @@ detected are wrong, you can provide the names yourself by overriding
|
||||
|
||||
.. code-block:: python
|
||||
|
||||
import_modules = ["six"]
|
||||
import_modules = ['six']
|
||||
|
||||
|
||||
Sometimes the list of module names to import depends on how the
|
||||
@@ -571,9 +571,9 @@ This can be expressed like so:
|
||||
|
||||
@property
|
||||
def import_modules(self):
|
||||
modules = ["yaml"]
|
||||
if self.spec.satisfies("+libyaml"):
|
||||
modules.append("yaml.cyaml")
|
||||
modules = ['yaml']
|
||||
if '+libyaml' in self.spec:
|
||||
modules.append('yaml.cyaml')
|
||||
return modules
|
||||
|
||||
|
||||
@@ -582,18 +582,18 @@ libraries. Make sure not to add modules/packages containing the word
|
||||
"test", as these likely won't end up in the installation directory,
|
||||
or may require test dependencies like pytest to be installed.
|
||||
|
||||
Instead of defining the ``import_modules`` explicitly, only the subset
|
||||
Instead of defining the ``import_modules`` explicity, only the subset
|
||||
of module names to be skipped can be defined by using ``skip_modules``.
|
||||
If a defined module has submodules, they are skipped as well, e.g.,
|
||||
in case the ``plotting`` modules should be excluded from the
|
||||
automatically detected ``import_modules`` ``["nilearn", "nilearn.surface",
|
||||
"nilearn.plotting", "nilearn.plotting.data"]`` set:
|
||||
automatically detected ``import_modules`` ``['nilearn', 'nilearn.surface',
|
||||
'nilearn.plotting', 'nilearn.plotting.data']`` set:
|
||||
|
||||
.. code-block:: python
|
||||
|
||||
skip_modules = ["nilearn.plotting"]
|
||||
skip_modules = ['nilearn.plotting']
|
||||
|
||||
This will set ``import_modules`` to ``["nilearn", "nilearn.surface"]``
|
||||
This will set ``import_modules`` to ``['nilearn', 'nilearn.surface']``
|
||||
|
||||
Import tests can be run during the installation using ``spack install
|
||||
--test=root`` or at any time after the installation using
|
||||
@@ -612,11 +612,11 @@ after the ``install`` phase:
|
||||
|
||||
.. code-block:: python
|
||||
|
||||
@run_after("install")
|
||||
@run_after('install')
|
||||
@on_package_attributes(run_tests=True)
|
||||
def install_test(self):
|
||||
with working_dir("spack-test", create=True):
|
||||
python("-c", "import numpy; numpy.test('full', verbose=2)")
|
||||
with working_dir('spack-test', create=True):
|
||||
python('-c', 'import numpy; numpy.test("full", verbose=2)')
|
||||
|
||||
|
||||
when testing is enabled during the installation (i.e., ``spack install
|
||||
@@ -638,7 +638,7 @@ provides Python bindings in a ``python`` directory, you can use:
|
||||
|
||||
.. code-block:: python
|
||||
|
||||
build_directory = "python"
|
||||
build_directory = 'python'
|
||||
|
||||
|
||||
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
|
||||
@@ -718,45 +718,24 @@ command-line tool, or C/C++/Fortran program with optional Python
|
||||
modules? The former should be prepended with ``py-``, while the
|
||||
latter should not.
|
||||
|
||||
""""""""""""""""""""""""""""""
|
||||
``extends`` vs. ``depends_on``
|
||||
""""""""""""""""""""""""""""""
|
||||
""""""""""""""""""""""
|
||||
extends vs. depends_on
|
||||
""""""""""""""""""""""
|
||||
|
||||
This is very similar to the naming dilemma above, with a slight twist.
|
||||
As mentioned in the :ref:`Packaging Guide <packaging_extensions>`,
|
||||
``extends`` and ``depends_on`` are very similar, but ``extends`` ensures
|
||||
that the extension and extendee share the same prefix in views.
|
||||
This allows the user to import a Python module without
|
||||
``extends`` and ``depends_on`` are very similar, but ``extends`` adds
|
||||
the ability to *activate* the package. Activation involves symlinking
|
||||
everything in the installation prefix of the package to the installation
|
||||
prefix of Python. This allows the user to import a Python module without
|
||||
having to add that module to ``PYTHONPATH``.
|
||||
|
||||
Additionally, ``extends("python")`` adds a dependency on the package
|
||||
``python-venv``. This improves isolation from the system, whether
|
||||
it's during the build or at runtime: user and system site packages
|
||||
cannot accidentally be used by any package that ``extends("python")``.
|
||||
|
||||
As a rule of thumb: if a package does not install any Python modules
|
||||
of its own, and merely puts a Python script in the ``bin`` directory,
|
||||
then there is no need for ``extends``. If the package installs modules
|
||||
in the ``site-packages`` directory, it requires ``extends``.
|
||||
|
||||
"""""""""""""""""""""""""""""""""""""
|
||||
Executing ``python`` during the build
|
||||
"""""""""""""""""""""""""""""""""""""
|
||||
|
||||
Whenever you need to execute a Python command or pass the path of the
|
||||
Python interpreter to the build system, it is best to use the global
|
||||
variable ``python`` directly. For example:
|
||||
|
||||
.. code-block:: python
|
||||
|
||||
@run_before("install")
|
||||
def recythonize(self):
|
||||
python("setup.py", "clean") # use the `python` global
|
||||
|
||||
As mentioned in the previous section, ``extends("python")`` adds an
|
||||
automatic dependency on ``python-venv``, which is a virtual environment
|
||||
that guarantees build isolation. The ``python`` global always refers to
|
||||
the correct Python interpreter, whether the package uses ``extends("python")``
|
||||
or ``depends_on("python")``.
|
||||
When deciding between ``extends`` and ``depends_on``, the best rule of
|
||||
thumb is to check the installation prefix. If Python libraries are
|
||||
installed to ``<prefix>/lib/pythonX.Y/site-packages``, then you
|
||||
should use ``extends``. If Python libraries are installed elsewhere
|
||||
or the only files that get installed reside in ``<prefix>/bin``, then
|
||||
don't use ``extends``, as symlinking the package wouldn't be useful.
|
||||
|
||||
^^^^^^^^^^^^^^^^^^^^^
|
||||
Alternatives to Spack
|
||||
|
@@ -1,13 +1,13 @@
|
||||
.. Copyright 2013-2024 Lawrence Livermore National Security, LLC and other
|
||||
.. Copyright 2013-2022 Lawrence Livermore National Security, LLC and other
|
||||
Spack Project Developers. See the top-level COPYRIGHT file for details.
|
||||
|
||||
SPDX-License-Identifier: (Apache-2.0 OR MIT)
|
||||
|
||||
.. _qmakepackage:
|
||||
|
||||
-----
|
||||
QMake
|
||||
-----
|
||||
------------
|
||||
QMakePackage
|
||||
------------
|
||||
|
||||
Much like Autotools and CMake, QMake is a build-script generator
|
||||
designed by the developers of Qt. In its simplest form, Spack's
|
||||
@@ -29,7 +29,7 @@ variables or edit ``*.pro`` files to get things working properly.
|
||||
Phases
|
||||
^^^^^^
|
||||
|
||||
The ``QMakeBuilder`` and ``QMakePackage`` base classes come with the following phases:
|
||||
The ``QMakePackage`` base class comes with the following phases:
|
||||
|
||||
#. ``qmake`` - generate Makefiles
|
||||
#. ``build`` - build the project
|
||||
@@ -83,7 +83,7 @@ base class already contains:
|
||||
|
||||
.. code-block:: python
|
||||
|
||||
depends_on("qt", type="build")
|
||||
depends_on('qt', type='build')
|
||||
|
||||
|
||||
If you want to specify a particular version requirement, or need to
|
||||
@@ -91,7 +91,7 @@ link to the ``qt`` libraries, you can override this in your package:
|
||||
|
||||
.. code-block:: python
|
||||
|
||||
depends_on("qt@5.6.0:")
|
||||
depends_on('qt@5.6.0:')
|
||||
|
||||
^^^^^^^^^^^^^^^^^^^^^^^^^^
|
||||
Passing arguments to qmake
|
||||
@@ -103,7 +103,7 @@ override the ``qmake_args`` method like so:
|
||||
.. code-block:: python
|
||||
|
||||
def qmake_args(self):
|
||||
return ["-recursive"]
|
||||
return ['-recursive']
|
||||
|
||||
|
||||
This method can be used to pass flags as well as variables.
|
||||
@@ -118,7 +118,7 @@ sub-directory by adding the following to the package:
|
||||
|
||||
.. code-block:: python
|
||||
|
||||
build_directory = "src"
|
||||
build_directory = 'src'
|
||||
|
||||
|
||||
^^^^^^^^^^^^^^^^^^^^^^
|
||||
|
@@ -1,13 +1,13 @@
|
||||
.. Copyright 2013-2024 Lawrence Livermore National Security, LLC and other
|
||||
.. Copyright 2013-2021 Lawrence Livermore National Security, LLC and other
|
||||
Spack Project Developers. See the top-level COPYRIGHT file for details.
|
||||
|
||||
SPDX-License-Identifier: (Apache-2.0 OR MIT)
|
||||
|
||||
.. _racketpackage:
|
||||
|
||||
------
|
||||
Racket
|
||||
------
|
||||
-------------
|
||||
RacketPackage
|
||||
-------------
|
||||
|
||||
Much like Python, Racket packages and modules have their own special build system.
|
||||
To learn more about the specifics of Racket package system, please refer to the
|
||||
@@ -17,7 +17,7 @@ To learn more about the specifics of Racket package system, please refer to the
|
||||
Phases
|
||||
^^^^^^
|
||||
|
||||
The ``RacketBuilder`` and ``RacketPackage`` base classes provides an ``install`` phase that
|
||||
The ``RacketPackage`` base class provides an ``install`` phase that
|
||||
can be overridden, corresponding to the use of:
|
||||
|
||||
.. code-block:: console
|
||||
|
@@ -1,13 +1,13 @@
|
||||
.. Copyright 2013-2024 Lawrence Livermore National Security, LLC and other
|
||||
.. Copyright 2013-2022 Lawrence Livermore National Security, LLC and other
|
||||
Spack Project Developers. See the top-level COPYRIGHT file for details.
|
||||
|
||||
SPDX-License-Identifier: (Apache-2.0 OR MIT)
|
||||
|
||||
.. _rocmpackage:
|
||||
|
||||
----
|
||||
ROCm
|
||||
----
|
||||
-----------
|
||||
ROCmPackage
|
||||
-----------
|
||||
|
||||
The ``ROCmPackage`` is not a build system but a helper package. Like ``CudaPackage``,
|
||||
it provides standard variants, dependencies, and conflicts to facilitate building
|
||||
@@ -25,7 +25,7 @@ This package provides the following variants:
|
||||
|
||||
* **rocm**
|
||||
|
||||
This variant is used to enable/disable building with ``rocm``.
|
||||
This variant is used to enable/disable building with ``rocm``.
|
||||
The default is disabled (or ``False``).
|
||||
|
||||
* **amdgpu_target**
|
||||
@@ -81,27 +81,28 @@ class of your package. For example, you can add it to your
|
||||
class MyRocmPackage(CMakePackage, ROCmPackage):
|
||||
...
|
||||
# Ensure +rocm and amdgpu_targets are passed to dependencies
|
||||
depends_on("mydeppackage", when="+rocm")
|
||||
depends_on('mydeppackage', when='+rocm')
|
||||
for val in ROCmPackage.amdgpu_targets:
|
||||
depends_on(f"mydeppackage amdgpu_target={val}",
|
||||
when=f"amdgpu_target={val}")
|
||||
depends_on('mydeppackage amdgpu_target={0}'.format(val),
|
||||
when='amdgpu_target={0}'.format(val))
|
||||
...
|
||||
|
||||
def cmake_args(self):
|
||||
spec = self.spec
|
||||
args = []
|
||||
...
|
||||
if spec.satisfies("+rocm"):
|
||||
if '+rocm' in spec:
|
||||
# Set up the hip macros needed by the build
|
||||
args.extend([
|
||||
"-DENABLE_HIP=ON",
|
||||
f"-DHIP_ROOT_DIR={spec['hip'].prefix}"])
|
||||
rocm_archs = spec.variants["amdgpu_target"].value
|
||||
if "none" not in rocm_archs:
|
||||
args.append(f"-DHIP_HIPCC_FLAGS=--amdgpu-target={','.join(rocm_archs}")
|
||||
'-DENABLE_HIP=ON',
|
||||
'-DHIP_ROOT_DIR={0}'.format(spec['hip'].prefix)])
|
||||
rocm_archs = spec.variants['amdgpu_target'].value
|
||||
if 'none' not in rocm_archs:
|
||||
args.append('-DHIP_HIPCC_FLAGS=--amdgpu-target={0}'
|
||||
.format(",".join(rocm_archs)))
|
||||
else:
|
||||
# Ensure build with hip is disabled
|
||||
args.append("-DENABLE_HIP=OFF")
|
||||
args.append('-DENABLE_HIP=OFF')
|
||||
...
|
||||
return args
|
||||
...
|
||||
@@ -113,7 +114,7 @@ build.
|
||||
|
||||
This example also illustrates how to check for the ``rocm`` variant using
|
||||
``self.spec`` and how to retrieve the ``amdgpu_target`` variant's value
|
||||
using ``self.spec.variants["amdgpu_target"].value``.
|
||||
using ``self.spec.variants['amdgpu_target'].value``.
|
||||
|
||||
All five packages using ``ROCmPackage`` as of January 2021 also use the
|
||||
:ref:`CudaPackage <cudapackage>`. So it is worth looking at those packages
|
||||
|
@@ -1,13 +1,13 @@
|
||||
.. Copyright 2013-2024 Lawrence Livermore National Security, LLC and other
|
||||
.. Copyright 2013-2022 Lawrence Livermore National Security, LLC and other
|
||||
Spack Project Developers. See the top-level COPYRIGHT file for details.
|
||||
|
||||
SPDX-License-Identifier: (Apache-2.0 OR MIT)
|
||||
|
||||
.. _rpackage:
|
||||
|
||||
--
|
||||
R
|
||||
--
|
||||
--------
|
||||
RPackage
|
||||
--------
|
||||
|
||||
Like Python, R has its own built-in build system.
|
||||
|
||||
@@ -19,7 +19,7 @@ new Spack packages for.
|
||||
Phases
|
||||
^^^^^^
|
||||
|
||||
The ``RBuilder`` and ``RPackage`` base classes have a single phase:
|
||||
The ``RPackage`` base class has a single phase:
|
||||
|
||||
#. ``install`` - install the package
|
||||
|
||||
@@ -163,28 +163,28 @@ attributes that can be used to set ``homepage``, ``url``, ``list_url``, and
|
||||
|
||||
.. code-block:: python
|
||||
|
||||
cran = "caret"
|
||||
cran = 'caret'
|
||||
|
||||
is equivalent to:
|
||||
|
||||
.. code-block:: python
|
||||
|
||||
homepage = "https://cloud.r-project.org/package=caret"
|
||||
url = "https://cloud.r-project.org/src/contrib/caret_6.0-86.tar.gz"
|
||||
list_url = "https://cloud.r-project.org/src/contrib/Archive/caret"
|
||||
homepage = 'https://cloud.r-project.org/package=caret'
|
||||
url = 'https://cloud.r-project.org/src/contrib/caret_6.0-86.tar.gz'
|
||||
list_url = 'https://cloud.r-project.org/src/contrib/Archive/caret'
|
||||
|
||||
Likewise, the following ``bioc`` attribute:
|
||||
|
||||
.. code-block:: python
|
||||
|
||||
bioc = "BiocVersion"
|
||||
bioc = 'BiocVersion'
|
||||
|
||||
is equivalent to:
|
||||
|
||||
.. code-block:: python
|
||||
|
||||
homepage = "https://bioconductor.org/packages/BiocVersion/"
|
||||
git = "https://git.bioconductor.org/packages/BiocVersion"
|
||||
homepage = 'https://bioconductor.org/packages/BiocVersion/'
|
||||
git = 'https://git.bioconductor.org/packages/BiocVersion'
|
||||
|
||||
|
||||
^^^^^^^^^^^^^^^^^^^^^^^^^
|
||||
@@ -193,14 +193,14 @@ Build system dependencies
|
||||
|
||||
As an extension of the R ecosystem, your package will obviously depend
|
||||
on R to build and run. Normally, we would use ``depends_on`` to express
|
||||
this, but for R packages, we use ``extends``. This implies a special
|
||||
dependency on R, which is used to set environment variables such as
|
||||
``R_LIBS`` uniformly. Since every R package needs this, the ``RPackage``
|
||||
base class contains:
|
||||
this, but for R packages, we use ``extends``. ``extends`` is similar to
|
||||
``depends_on``, but adds an additional feature: the ability to "activate"
|
||||
the package by symlinking it to the R installation directory. Since
|
||||
every R package needs this, the ``RPackage`` base class contains:
|
||||
|
||||
.. code-block:: python
|
||||
|
||||
extends("r")
|
||||
extends('r')
|
||||
|
||||
|
||||
Take a close look at the homepage for ``caret``. If you look at the
|
||||
@@ -209,7 +209,7 @@ You should add this to your package like so:
|
||||
|
||||
.. code-block:: python
|
||||
|
||||
depends_on("r@3.2.0:", type=("build", "run"))
|
||||
depends_on('r@3.2.0:', type=('build', 'run'))
|
||||
|
||||
|
||||
^^^^^^^^^^^^^^
|
||||
@@ -227,7 +227,7 @@ and list all of their dependencies in the following sections:
|
||||
* LinkingTo
|
||||
|
||||
As far as Spack is concerned, all 3 of these dependency types
|
||||
correspond to ``type=("build", "run")``, so you don't have to worry
|
||||
correspond to ``type=('build', 'run')``, so you don't have to worry
|
||||
about the details. If you are curious what they mean,
|
||||
https://github.com/spack/spack/issues/2951 has a pretty good summary:
|
||||
|
||||
@@ -330,7 +330,7 @@ the dependency:
|
||||
|
||||
.. code-block:: python
|
||||
|
||||
depends_on("r-lattice@0.20:", type=("build", "run"))
|
||||
depends_on('r-lattice@0.20:', type=('build', 'run'))
|
||||
|
||||
|
||||
^^^^^^^^^^^^^^^^^^
|
||||
@@ -361,20 +361,20 @@ like so:
|
||||
.. code-block:: python
|
||||
|
||||
def configure_args(self):
|
||||
mpi_name = self.spec["mpi"].name
|
||||
mpi_name = self.spec['mpi'].name
|
||||
|
||||
# The type of MPI. Supported values are:
|
||||
# OPENMPI, LAM, MPICH, MPICH2, or CRAY
|
||||
if mpi_name == "openmpi":
|
||||
Rmpi_type = "OPENMPI"
|
||||
elif mpi_name == "mpich":
|
||||
Rmpi_type = "MPICH2"
|
||||
if mpi_name == 'openmpi':
|
||||
Rmpi_type = 'OPENMPI'
|
||||
elif mpi_name == 'mpich':
|
||||
Rmpi_type = 'MPICH2'
|
||||
else:
|
||||
raise InstallError("Unsupported MPI type")
|
||||
raise InstallError('Unsupported MPI type')
|
||||
|
||||
return [
|
||||
"--with-Rmpi-type={0}".format(Rmpi_type),
|
||||
"--with-mpi={0}".format(spec["mpi"].prefix),
|
||||
'--with-Rmpi-type={0}'.format(Rmpi_type),
|
||||
'--with-mpi={0}'.format(spec['mpi'].prefix),
|
||||
]
|
||||
|
||||
|
||||
|
@@ -1,13 +1,13 @@
|
||||
.. Copyright 2013-2024 Lawrence Livermore National Security, LLC and other
|
||||
.. Copyright 2013-2022 Lawrence Livermore National Security, LLC and other
|
||||
Spack Project Developers. See the top-level COPYRIGHT file for details.
|
||||
|
||||
SPDX-License-Identifier: (Apache-2.0 OR MIT)
|
||||
|
||||
.. _rubypackage:
|
||||
|
||||
----
|
||||
Ruby
|
||||
----
|
||||
-----------
|
||||
RubyPackage
|
||||
-----------
|
||||
|
||||
Like Perl, Python, and R, Ruby has its own build system for
|
||||
installing Ruby gems.
|
||||
@@ -16,7 +16,7 @@ installing Ruby gems.
|
||||
Phases
|
||||
^^^^^^
|
||||
|
||||
The ``RubyBuilder`` and ``RubyPackage`` base classes provide the following phases that
|
||||
The ``RubyPackage`` base class provides the following phases that
|
||||
can be overridden:
|
||||
|
||||
#. ``build`` - build everything needed to install
|
||||
@@ -84,8 +84,8 @@ The ``*.gemspec`` file may contain something like:
|
||||
|
||||
.. code-block:: ruby
|
||||
|
||||
summary = "An implementation of the AsciiDoc text processor and publishing toolchain"
|
||||
description = "A fast, open source text processor and publishing toolchain for converting AsciiDoc content to HTML 5, DocBook 5, and other formats."
|
||||
summary = 'An implementation of the AsciiDoc text processor and publishing toolchain'
|
||||
description = 'A fast, open source text processor and publishing toolchain for converting AsciiDoc content to HTML 5, DocBook 5, and other formats.'
|
||||
|
||||
|
||||
Either of these can be used for the description of the Spack package.
|
||||
@@ -98,7 +98,7 @@ The ``*.gemspec`` file may contain something like:
|
||||
|
||||
.. code-block:: ruby
|
||||
|
||||
homepage = "https://asciidoctor.org"
|
||||
homepage = 'https://asciidoctor.org'
|
||||
|
||||
|
||||
This should be used as the official homepage of the Spack package.
|
||||
@@ -112,21 +112,21 @@ the base class contains:
|
||||
|
||||
.. code-block:: python
|
||||
|
||||
extends("ruby")
|
||||
extends('ruby')
|
||||
|
||||
|
||||
The ``*.gemspec`` file may contain something like:
|
||||
|
||||
.. code-block:: ruby
|
||||
|
||||
required_ruby_version = ">= 2.3.0"
|
||||
required_ruby_version = '>= 2.3.0'
|
||||
|
||||
|
||||
This can be added to the Spack package using:
|
||||
|
||||
.. code-block:: python
|
||||
|
||||
depends_on("ruby@2.3.0:", type=("build", "run"))
|
||||
depends_on('ruby@2.3.0:', type=('build', 'run'))
|
||||
|
||||
|
||||
^^^^^^^^^^^^^^^^^
|
||||
|
@@ -1,13 +1,13 @@
|
||||
.. Copyright 2013-2024 Lawrence Livermore National Security, LLC and other
|
||||
.. Copyright 2013-2022 Lawrence Livermore National Security, LLC and other
|
||||
Spack Project Developers. See the top-level COPYRIGHT file for details.
|
||||
|
||||
SPDX-License-Identifier: (Apache-2.0 OR MIT)
|
||||
|
||||
.. _sconspackage:
|
||||
|
||||
-----
|
||||
SCons
|
||||
-----
|
||||
------------
|
||||
SConsPackage
|
||||
------------
|
||||
|
||||
SCons is a general-purpose build system that does not rely on
|
||||
Makefiles to build software. SCons is written in Python, and handles
|
||||
@@ -42,7 +42,7 @@ As previously mentioned, SCons allows developers to add subcommands like
|
||||
$ scons install
|
||||
|
||||
|
||||
To facilitate this, the ``SConsBuilder`` and ``SconsPackage`` base classes provide the
|
||||
To facilitate this, the ``SConsPackage`` base class provides the
|
||||
following phases:
|
||||
|
||||
#. ``build`` - build the package
|
||||
@@ -57,7 +57,7 @@ overridden like so:
|
||||
.. code-block:: python
|
||||
|
||||
def test(self):
|
||||
scons("check")
|
||||
scons('check')
|
||||
|
||||
|
||||
^^^^^^^^^^^^^^^
|
||||
@@ -88,7 +88,7 @@ base class already contains:
|
||||
|
||||
.. code-block:: python
|
||||
|
||||
depends_on("scons", type="build")
|
||||
depends_on('scons', type='build')
|
||||
|
||||
|
||||
If you want to specify a particular version requirement, you can override
|
||||
@@ -96,7 +96,7 @@ this in your package:
|
||||
|
||||
.. code-block:: python
|
||||
|
||||
depends_on("scons@2.3.0:", type="build")
|
||||
depends_on('scons@2.3.0:', type='build')
|
||||
|
||||
|
||||
^^^^^^^^^^^^^^^^^^^^^^^^^
|
||||
@@ -238,14 +238,14 @@ the package build phase. This is done by overriding ``build_args`` like so:
|
||||
|
||||
def build_args(self, spec, prefix):
|
||||
args = [
|
||||
f"PREFIX={prefix}",
|
||||
f"ZLIB={spec['zlib'].prefix}",
|
||||
'PREFIX={0}'.format(prefix),
|
||||
'ZLIB={0}'.format(spec['zlib'].prefix),
|
||||
]
|
||||
|
||||
if spec.satisfies("+debug"):
|
||||
args.append("DEBUG=yes")
|
||||
if '+debug' in spec:
|
||||
args.append('DEBUG=yes')
|
||||
else:
|
||||
args.append("DEBUG=no")
|
||||
args.append('DEBUG=no')
|
||||
|
||||
return args
|
||||
|
||||
@@ -275,8 +275,8 @@ environment variables. For example, cantera has the following option:
|
||||
* env_vars: [ string ]
|
||||
Environment variables to propagate through to SCons. Either the
|
||||
string "all" or a comma separated list of variable names, e.g.
|
||||
"LD_LIBRARY_PATH,HOME".
|
||||
- default: "LD_LIBRARY_PATH,PYTHONPATH"
|
||||
'LD_LIBRARY_PATH,HOME'.
|
||||
- default: 'LD_LIBRARY_PATH,PYTHONPATH'
|
||||
|
||||
|
||||
In the case of cantera, using ``env_vars=all`` allows us to use
|
||||
|
@@ -1,13 +1,13 @@
|
||||
.. Copyright 2013-2024 Lawrence Livermore National Security, LLC and other
|
||||
.. Copyright 2013-2022 Lawrence Livermore National Security, LLC and other
|
||||
Spack Project Developers. See the top-level COPYRIGHT file for details.
|
||||
|
||||
SPDX-License-Identifier: (Apache-2.0 OR MIT)
|
||||
|
||||
.. _sippackage:
|
||||
|
||||
---
|
||||
SIP
|
||||
---
|
||||
----------
|
||||
SIPPackage
|
||||
----------
|
||||
|
||||
SIP is a tool that makes it very easy to create Python bindings for C and C++
|
||||
libraries. It was originally developed to create PyQt, the Python bindings for
|
||||
@@ -22,7 +22,7 @@ provides support functions to the automatically generated code.
|
||||
Phases
|
||||
^^^^^^
|
||||
|
||||
The ``SIPBuilder`` and ``SIPPackage`` base classes come with the following phases:
|
||||
The ``SIPPackage`` base class comes with the following phases:
|
||||
|
||||
#. ``configure`` - configure the package
|
||||
#. ``build`` - build the package
|
||||
@@ -32,7 +32,7 @@ By default, these phases run:
|
||||
|
||||
.. code-block:: console
|
||||
|
||||
$ sip-build --verbose --target-dir ...
|
||||
$ python configure.py --bindir ... --destdir ...
|
||||
$ make
|
||||
$ make install
|
||||
|
||||
@@ -41,30 +41,30 @@ By default, these phases run:
|
||||
Important files
|
||||
^^^^^^^^^^^^^^^
|
||||
|
||||
Each SIP package comes with a custom configuration file written in Python.
|
||||
For newer packages, this is called ``project.py``, while in older packages,
|
||||
it may be called ``configure.py``. This script contains instructions to build
|
||||
the project.
|
||||
Each SIP package comes with a custom ``configure.py`` build script,
|
||||
written in Python. This script contains instructions to build the project.
|
||||
|
||||
^^^^^^^^^^^^^^^^^^^^^^^^^
|
||||
Build system dependencies
|
||||
^^^^^^^^^^^^^^^^^^^^^^^^^
|
||||
|
||||
``SIPPackage`` requires several dependencies. Python and SIP are needed at build-time
|
||||
to run the aforementioned configure script. Python is also needed at run-time to
|
||||
actually use the installed Python library. And as we are building Python bindings
|
||||
for C/C++ libraries, Python is also needed as a link dependency. All of these
|
||||
dependencies are automatically added via the base class.
|
||||
``SIPPackage`` requires several dependencies. Python is needed to run
|
||||
the ``configure.py`` build script, and to run the resulting Python
|
||||
libraries. Qt is needed to provide the ``qmake`` command. SIP is also
|
||||
needed to build the package. All of these dependencies are automatically
|
||||
added via the base class
|
||||
|
||||
.. code-block:: python
|
||||
|
||||
extends("python", type=("build", "link", "run"))
|
||||
depends_on("py-sip", type="build")
|
||||
extends('python')
|
||||
|
||||
depends_on('qt', type='build')
|
||||
|
||||
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
|
||||
Passing arguments to ``sip-build``
|
||||
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
|
||||
depends_on('py-sip', type='build')
|
||||
|
||||
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
|
||||
Passing arguments to ``configure.py``
|
||||
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
|
||||
|
||||
Each phase comes with a ``<phase_args>`` function that can be used to pass
|
||||
arguments to that particular phase. For example, if you need to pass
|
||||
@@ -72,11 +72,11 @@ arguments to the configure phase, you can use:
|
||||
|
||||
.. code-block:: python
|
||||
|
||||
def configure_args(self):
|
||||
return ["--no-python-dbus"]
|
||||
def configure_args(self, spec, prefix):
|
||||
return ['--no-python-dbus']
|
||||
|
||||
|
||||
A list of valid options can be found by running ``sip-build --help``.
|
||||
A list of valid options can be found by running ``python configure.py --help``.
|
||||
|
||||
^^^^^^^
|
||||
Testing
|
||||
@@ -124,7 +124,7 @@ are wrong, you can provide the names yourself by overriding
|
||||
|
||||
.. code-block:: python
|
||||
|
||||
import_modules = ["PyQt5"]
|
||||
import_modules = ['PyQt5']
|
||||
|
||||
|
||||
These tests often catch missing dependencies and non-RPATHed
|
||||
|
@@ -1,19 +1,19 @@
|
||||
.. Copyright 2013-2024 Lawrence Livermore National Security, LLC and other
|
||||
.. Copyright 2013-2022 Lawrence Livermore National Security, LLC and other
|
||||
Spack Project Developers. See the top-level COPYRIGHT file for details.
|
||||
|
||||
SPDX-License-Identifier: (Apache-2.0 OR MIT)
|
||||
|
||||
.. _sourceforgepackage:
|
||||
|
||||
-----------
|
||||
Sourceforge
|
||||
-----------
|
||||
------------------
|
||||
SourceforgePackage
|
||||
------------------
|
||||
|
||||
``SourceforgePackage`` is a
|
||||
``SourceforgePackage`` is a
|
||||
`mixin-class <https://en.wikipedia.org/wiki/Mixin>`_. It automatically
|
||||
sets the URL based on a list of Sourceforge mirrors listed in
|
||||
`sourceforge_mirror_path`, which defaults to a half dozen known mirrors.
|
||||
Refer to the package source
|
||||
Refer to the package source
|
||||
(`<https://github.com/spack/spack/blob/develop/lib/spack/spack/build_systems/sourceforge.py>`__) for the current list of mirrors used by Spack.
|
||||
|
||||
|
||||
@@ -29,7 +29,7 @@ This package provides a method for populating mirror URLs.
|
||||
It is decorated with `property` so its results are treated as
|
||||
a package attribute.
|
||||
|
||||
Refer to
|
||||
Refer to
|
||||
`<https://spack.readthedocs.io/en/latest/packaging_guide.html#mirrors-of-the-main-url>`__
|
||||
for information on how Spack uses the `urls` attribute during
|
||||
fetching.
|
||||
|
@@ -1,13 +1,13 @@
|
||||
.. Copyright 2013-2024 Lawrence Livermore National Security, LLC and other
|
||||
.. Copyright 2013-2022 Lawrence Livermore National Security, LLC and other
|
||||
Spack Project Developers. See the top-level COPYRIGHT file for details.
|
||||
|
||||
SPDX-License-Identifier: (Apache-2.0 OR MIT)
|
||||
|
||||
.. _wafpackage:
|
||||
|
||||
---
|
||||
Waf
|
||||
---
|
||||
----------
|
||||
WafPackage
|
||||
----------
|
||||
|
||||
Like SCons, Waf is a general-purpose build system that does not rely
|
||||
on Makefiles to build software.
|
||||
@@ -16,7 +16,7 @@ on Makefiles to build software.
|
||||
Phases
|
||||
^^^^^^
|
||||
|
||||
The ``WafBuilder`` and ``WafPackage`` base classes come with the following phases:
|
||||
The ``WafPackage`` base class comes with the following phases:
|
||||
|
||||
#. ``configure`` - configure the project
|
||||
#. ``build`` - build the project
|
||||
@@ -58,13 +58,15 @@ Testing
|
||||
``WafPackage`` also provides ``test`` and ``installtest`` methods,
|
||||
which are run after the ``build`` and ``install`` phases, respectively.
|
||||
By default, these phases do nothing, but you can override them to
|
||||
run package-specific unit tests.
|
||||
run package-specific unit tests. For example, the
|
||||
`py-py2cairo <https://github.com/spack/spack/blob/develop/var/spack/repos/builtin/packages/py-py2cairo/package.py>`_
|
||||
package uses:
|
||||
|
||||
.. code-block:: python
|
||||
|
||||
def installtest(self):
|
||||
with working_dir("test"):
|
||||
pytest = which("py.test")
|
||||
with working_dir('test'):
|
||||
pytest = which('py.test')
|
||||
pytest()
|
||||
|
||||
|
||||
@@ -93,7 +95,7 @@ the following dependency automatically:
|
||||
|
||||
.. code-block:: python
|
||||
|
||||
depends_on("python@2.5:", type="build")
|
||||
depends_on('python@2.5:', type='build')
|
||||
|
||||
|
||||
Waf only supports Python 2.5 and up.
|
||||
@@ -113,7 +115,7 @@ phase, you can use:
|
||||
args = []
|
||||
|
||||
if self.run_tests:
|
||||
args.append("--test")
|
||||
args.append('--test')
|
||||
|
||||
return args
|
||||
|
||||
|
@@ -1,4 +1,4 @@
|
||||
.. Copyright 2013-2024 Lawrence Livermore National Security, LLC and other
|
||||
.. Copyright 2013-2022 Lawrence Livermore National Security, LLC and other
|
||||
Spack Project Developers. See the top-level COPYRIGHT file for details.
|
||||
|
||||
SPDX-License-Identifier: (Apache-2.0 OR MIT)
|
||||
|
@@ -1,4 +1,4 @@
|
||||
# Copyright 2013-2024 Lawrence Livermore National Security, LLC and other
|
||||
# Copyright 2013-2022 Lawrence Livermore National Security, LLC and other
|
||||
# Spack Project Developers. See the top-level COPYRIGHT file for details.
|
||||
#
|
||||
# SPDX-License-Identifier: (Apache-2.0 OR MIT)
|
||||
@@ -32,11 +32,14 @@
|
||||
# If extensions (or modules to document with autodoc) are in another directory,
|
||||
# add these directories to sys.path here. If the directory is relative to the
|
||||
# documentation root, use os.path.abspath to make it absolute, like shown here.
|
||||
link_name = os.path.abspath("_spack_root")
|
||||
if not os.path.exists(link_name):
|
||||
os.symlink(os.path.abspath("../../.."), link_name, target_is_directory=True)
|
||||
sys.path.insert(0, os.path.abspath("_spack_root/lib/spack/external"))
|
||||
sys.path.insert(0, os.path.abspath("_spack_root/lib/spack/external/_vendoring"))
|
||||
sys.path.insert(0, os.path.abspath("_spack_root/lib/spack/external/pytest-fallback"))
|
||||
|
||||
if sys.version_info[0] < 3:
|
||||
sys.path.insert(0, os.path.abspath("_spack_root/lib/spack/external/yaml/lib"))
|
||||
else:
|
||||
sys.path.insert(0, os.path.abspath("_spack_root/lib/spack/external/yaml/lib3"))
|
||||
|
||||
sys.path.append(os.path.abspath("_spack_root/lib/spack/"))
|
||||
|
||||
# Add the Spack bin directory to the path so that we can use its output in docs.
|
||||
@@ -48,6 +51,9 @@
|
||||
os.environ["COLIFY_SIZE"] = "25x120"
|
||||
os.environ["COLUMNS"] = "120"
|
||||
|
||||
# Generate full package list if needed
|
||||
subprocess.call(["spack", "list", "--format=html", "--update=package_list.html"])
|
||||
|
||||
# Generate a command index if an update is needed
|
||||
subprocess.call(
|
||||
[
|
||||
@@ -71,22 +77,13 @@
|
||||
"--force", # Overwrite existing files
|
||||
"--no-toc", # Don't create a table of contents file
|
||||
"--output-dir=.", # Directory to place all output
|
||||
"--module-first", # emit module docs before submodule docs
|
||||
]
|
||||
sphinx_apidoc(
|
||||
apidoc_args
|
||||
+ [
|
||||
"_spack_root/lib/spack/spack",
|
||||
"_spack_root/lib/spack/spack/test/*.py",
|
||||
"_spack_root/lib/spack/spack/test/cmd/*.py",
|
||||
]
|
||||
)
|
||||
sphinx_apidoc(apidoc_args + ["_spack_root/lib/spack/spack"])
|
||||
sphinx_apidoc(apidoc_args + ["_spack_root/lib/spack/llnl"])
|
||||
|
||||
# Enable todo items
|
||||
todo_include_todos = True
|
||||
|
||||
|
||||
#
|
||||
# Disable duplicate cross-reference warnings.
|
||||
#
|
||||
@@ -94,7 +91,9 @@ class PatchedPythonDomain(PythonDomain):
|
||||
def resolve_xref(self, env, fromdocname, builder, typ, target, node, contnode):
|
||||
if "refspecific" in node:
|
||||
del node["refspecific"]
|
||||
return super().resolve_xref(env, fromdocname, builder, typ, target, node, contnode)
|
||||
return super(PatchedPythonDomain, self).resolve_xref(
|
||||
env, fromdocname, builder, typ, target, node, contnode
|
||||
)
|
||||
|
||||
|
||||
#
|
||||
@@ -144,6 +143,7 @@ def setup(sphinx):
|
||||
# Get nice vector graphics
|
||||
graphviz_output_format = "svg"
|
||||
|
||||
|
||||
# Add any paths that contain templates here, relative to this directory.
|
||||
templates_path = ["_templates"]
|
||||
|
||||
@@ -157,8 +157,8 @@ def setup(sphinx):
|
||||
master_doc = "index"
|
||||
|
||||
# General information about the project.
|
||||
project = "Spack"
|
||||
copyright = "2013-2023, Lawrence Livermore National Laboratory."
|
||||
project = u"Spack"
|
||||
copyright = u"2013-2021, Lawrence Livermore National Laboratory."
|
||||
|
||||
# The version info for the project you're documenting, acts as replacement for
|
||||
# |version| and |release|, also used in various other places throughout the
|
||||
@@ -199,24 +199,13 @@ def setup(sphinx):
|
||||
("py:class", "contextlib.contextmanager"),
|
||||
("py:class", "module"),
|
||||
("py:class", "_io.BufferedReader"),
|
||||
("py:class", "_io.BytesIO"),
|
||||
("py:class", "unittest.case.TestCase"),
|
||||
("py:class", "_frozen_importlib_external.SourceFileLoader"),
|
||||
("py:class", "clingo.Control"),
|
||||
("py:class", "six.moves.urllib.parse.ParseResult"),
|
||||
("py:class", "TextIO"),
|
||||
("py:class", "hashlib._Hash"),
|
||||
# Spack classes that are private and we don't want to expose
|
||||
("py:class", "spack.provider_index._IndexBase"),
|
||||
("py:class", "spack.repo._PrependFileLoader"),
|
||||
("py:class", "spack.build_systems._checks.BaseBuilder"),
|
||||
# Spack classes that intersphinx is unable to resolve
|
||||
("py:class", "spack.version.StandardVersion"),
|
||||
("py:class", "spack.spec.DependencySpec"),
|
||||
("py:class", "spack.spec.InstallStatus"),
|
||||
("py:class", "spack.spec.SpecfileReaderBase"),
|
||||
("py:class", "spack.install_test.Pb"),
|
||||
("py:class", "spack.filesystem_view.SimpleFilesystemView"),
|
||||
]
|
||||
|
||||
# The reST default role (used for this markup: `text`) to use for all documents.
|
||||
@@ -232,8 +221,30 @@ def setup(sphinx):
|
||||
# If true, sectionauthor and moduleauthor directives will be shown in the
|
||||
# output. They are ignored by default.
|
||||
# show_authors = False
|
||||
sys.path.append("./_pygments")
|
||||
pygments_style = "style.SpackStyle"
|
||||
|
||||
# The name of the Pygments (syntax highlighting) style to use.
|
||||
# We use our own extension of the default style with a few modifications
|
||||
from pygments.style import Style
|
||||
from pygments.styles.default import DefaultStyle
|
||||
from pygments.token import Comment, Generic, Text
|
||||
|
||||
|
||||
class SpackStyle(DefaultStyle):
|
||||
styles = DefaultStyle.styles.copy()
|
||||
background_color = "#f4f4f8"
|
||||
styles[Generic.Output] = "#355"
|
||||
styles[Generic.Prompt] = "bold #346ec9"
|
||||
|
||||
|
||||
import pkg_resources
|
||||
|
||||
dist = pkg_resources.Distribution(__file__)
|
||||
sys.path.append(".") # make 'conf' module findable
|
||||
ep = pkg_resources.EntryPoint.parse("spack = conf:SpackStyle", dist=dist)
|
||||
dist._ep_map = {"pygments.styles": {"plugin1": ep}}
|
||||
pkg_resources.working_set.add(dist)
|
||||
|
||||
pygments_style = "spack"
|
||||
|
||||
# A list of ignored prefixes for module index sorting.
|
||||
# modindex_common_prefix = []
|
||||
@@ -318,20 +329,23 @@ def setup(sphinx):
|
||||
# Output file base name for HTML help builder.
|
||||
htmlhelp_basename = "Spackdoc"
|
||||
|
||||
|
||||
# -- Options for LaTeX output --------------------------------------------------
|
||||
|
||||
latex_elements = {
|
||||
# The paper size ('letterpaper' or 'a4paper').
|
||||
# 'papersize': 'letterpaper',
|
||||
#'papersize': 'letterpaper',
|
||||
# The font size ('10pt', '11pt' or '12pt').
|
||||
# 'pointsize': '10pt',
|
||||
#'pointsize': '10pt',
|
||||
# Additional stuff for the LaTeX preamble.
|
||||
# 'preamble': '',
|
||||
#'preamble': '',
|
||||
}
|
||||
|
||||
# Grouping the document tree into LaTeX files. List of tuples
|
||||
# (source start file, target name, title, author, documentclass [howto/manual]).
|
||||
latex_documents = [("index", "Spack.tex", "Spack Documentation", "Todd Gamblin", "manual")]
|
||||
latex_documents = [
|
||||
("index", "Spack.tex", u"Spack Documentation", u"Todd Gamblin", "manual"),
|
||||
]
|
||||
|
||||
# The name of an image file (relative to this directory) to place at the top of
|
||||
# the title page.
|
||||
@@ -358,7 +372,7 @@ def setup(sphinx):
|
||||
|
||||
# One entry per manual page. List of tuples
|
||||
# (source start file, name, description, authors, manual section).
|
||||
man_pages = [("index", "spack", "Spack Documentation", ["Todd Gamblin"], 1)]
|
||||
man_pages = [("index", "spack", u"Spack Documentation", [u"Todd Gamblin"], 1)]
|
||||
|
||||
# If true, show URL addresses after external links.
|
||||
# man_show_urls = False
|
||||
@@ -373,12 +387,12 @@ def setup(sphinx):
|
||||
(
|
||||
"index",
|
||||
"Spack",
|
||||
"Spack Documentation",
|
||||
"Todd Gamblin",
|
||||
u"Spack Documentation",
|
||||
u"Todd Gamblin",
|
||||
"Spack",
|
||||
"One line description of project.",
|
||||
"Miscellaneous",
|
||||
)
|
||||
),
|
||||
]
|
||||
|
||||
# Documents to append as an appendix to all manuals.
|
||||
@@ -394,4 +408,6 @@ def setup(sphinx):
|
||||
# -- Extension configuration -------------------------------------------------
|
||||
|
||||
# sphinx.ext.intersphinx
|
||||
intersphinx_mapping = {"python": ("https://docs.python.org/3", None)}
|
||||
intersphinx_mapping = {
|
||||
"python": ("https://docs.python.org/3", None),
|
||||
}
|
||||
|
@@ -1,4 +1,4 @@
|
||||
.. Copyright 2013-2024 Lawrence Livermore National Security, LLC and other
|
||||
.. Copyright 2013-2022 Lawrence Livermore National Security, LLC and other
|
||||
Spack Project Developers. See the top-level COPYRIGHT file for details.
|
||||
|
||||
SPDX-License-Identifier: (Apache-2.0 OR MIT)
|
||||
@@ -145,25 +145,6 @@ hosts when making ``ssl`` connections. Set to ``false`` to disable, and
|
||||
tools like ``curl`` will use their ``--insecure`` options. Disabling
|
||||
this can expose you to attacks. Use at your own risk.
|
||||
|
||||
--------------------
|
||||
``ssl_certs``
|
||||
--------------------
|
||||
|
||||
Path to custom certificats for SSL verification. The value can be a
|
||||
filesytem path, or an environment variable that expands to an absolute file path.
|
||||
The default value is set to the environment variable ``SSL_CERT_FILE``
|
||||
to use the same syntax used by many other applications that automatically
|
||||
detect custom certificates.
|
||||
When ``url_fetch_method:curl`` the ``config:ssl_certs`` should resolve to
|
||||
a single file. Spack will then set the environment variable ``CURL_CA_BUNDLE``
|
||||
in the subprocess calling ``curl``.
|
||||
If ``url_fetch_method:urllib`` then files and directories are supported i.e.
|
||||
``config:ssl_certs:$SSL_CERT_FILE`` or ``config:ssl_certs:$SSL_CERT_DIR``
|
||||
will work.
|
||||
In all cases the expanded path must be absolute for Spack to use the certificates.
|
||||
Certificates relative to an environment can be created by prepending the path variable
|
||||
with the Spack configuration variable``$env``.
|
||||
|
||||
--------------------
|
||||
``checksum``
|
||||
--------------------
|
||||
@@ -241,11 +222,11 @@ and location. (See the *Configuration settings* section of ``man
|
||||
ccache`` to learn more about the default settings and how to change
|
||||
them). Please note that we currently disable ccache's ``hash_dir``
|
||||
feature to avoid an issue with the stage directory (see
|
||||
https://github.com/spack/spack/pull/3761#issuecomment-294352232).
|
||||
https://github.com/LLNL/spack/pull/3761#issuecomment-294352232).
|
||||
|
||||
-----------------------
|
||||
``shared_linking:type``
|
||||
-----------------------
|
||||
------------------
|
||||
``shared_linking``
|
||||
------------------
|
||||
|
||||
Control whether Spack embeds ``RPATH`` or ``RUNPATH`` attributes in ELF binaries
|
||||
so that they can find their dependencies. Has no effect on macOS.
|
||||
@@ -264,76 +245,15 @@ the loading object.
|
||||
|
||||
DO NOT MIX the two options within the same install tree.
|
||||
|
||||
-----------------------
|
||||
``shared_linking:bind``
|
||||
-----------------------
|
||||
|
||||
This is an *experimental option* that controls whether Spack embeds absolute paths
|
||||
to needed shared libraries in ELF executables and shared libraries on Linux. Setting
|
||||
this option to ``true`` has two advantages:
|
||||
|
||||
1. **Improved startup time**: when running an executable, the dynamic loader does not
|
||||
have to perform a search for needed libraries, they are loaded directly.
|
||||
2. **Reliability**: libraries loaded at runtime are those that were linked to. This
|
||||
minimizes the risk of accidentally picking up system libraries.
|
||||
|
||||
In the current implementation, Spack sets the soname (shared object name) of
|
||||
libraries to their install path upon installation. This has two implications:
|
||||
|
||||
1. binding does not apply to libraries installed *before* the option was enabled;
|
||||
2. toggling the option off does *not* prevent binding of libraries installed when
|
||||
the option was still enabled.
|
||||
|
||||
It is also worth noting that:
|
||||
|
||||
1. Applications relying on ``dlopen(3)`` will continue to work, even when they open
|
||||
a library by name. This is because ``RPATH``\s are retained in binaries also
|
||||
when ``bind`` is enabled.
|
||||
2. ``LD_PRELOAD`` continues to work for the typical use case of overriding
|
||||
symbols, such as preloading a library with a more efficient ``malloc``.
|
||||
However, the preloaded library will be loaded *additionally to*, instead of
|
||||
*in place of* another library with the same name --- this can be problematic
|
||||
in very rare cases where libraries rely on a particular ``init`` or ``fini``
|
||||
order.
|
||||
|
||||
.. note::
|
||||
|
||||
In some cases packages provide *stub libraries* that only contain an interface
|
||||
for linking, but lack an implementation for runtime. An example of this is
|
||||
``libcuda.so``, provided by the CUDA toolkit; it can be used to link against,
|
||||
but the library needed at runtime is the one installed with the CUDA driver.
|
||||
To avoid binding those libraries, they can be marked as non-bindable using
|
||||
a property in the package:
|
||||
|
||||
.. code-block:: python
|
||||
|
||||
class Example(Package):
|
||||
non_bindable_shared_objects = ["libinterface.so"]
|
||||
|
||||
----------------------
|
||||
``install_status``
|
||||
``terminal_title``
|
||||
----------------------
|
||||
|
||||
When set to ``true``, Spack will show information about its current progress
|
||||
as well as the current and total package numbers. Progress is shown both
|
||||
in the terminal title and inline. Setting it to ``false`` will not show any
|
||||
progress information.
|
||||
By setting this option to ``true``, Spack will update the terminal's title to
|
||||
provide information about its current progress as well as the current and
|
||||
total package numbers.
|
||||
|
||||
To work properly, this requires your terminal to reset its title after
|
||||
Spack has finished its work, otherwise Spack's status information will
|
||||
remain in the terminal's title indefinitely. Most terminals should already
|
||||
be set up this way and clear Spack's status information.
|
||||
|
||||
-----------
|
||||
``aliases``
|
||||
-----------
|
||||
|
||||
Aliases can be used to define new Spack commands. They can be either shortcuts
|
||||
for longer commands or include specific arguments for convenience. For instance,
|
||||
if users want to use ``spack install``'s ``-v`` argument all the time, they can
|
||||
create a new alias called ``inst`` that will always call ``install -v``:
|
||||
|
||||
.. code-block:: yaml
|
||||
|
||||
aliases:
|
||||
inst: install -v
|
||||
|
@@ -1,4 +1,4 @@
|
||||
.. Copyright 2013-2024 Lawrence Livermore National Security, LLC and other
|
||||
.. Copyright 2013-2022 Lawrence Livermore National Security, LLC and other
|
||||
Spack Project Developers. See the top-level COPYRIGHT file for details.
|
||||
|
||||
SPDX-License-Identifier: (Apache-2.0 OR MIT)
|
||||
@@ -17,12 +17,11 @@ case you want to skip directly to specific docs:
|
||||
* :ref:`config.yaml <config-yaml>`
|
||||
* :ref:`mirrors.yaml <mirrors>`
|
||||
* :ref:`modules.yaml <modules>`
|
||||
* :ref:`packages.yaml <packages-config>`
|
||||
* :ref:`packages.yaml <build-settings>`
|
||||
* :ref:`repos.yaml <repositories>`
|
||||
|
||||
You can also add any of these as inline configuration in the YAML
|
||||
manifest file (``spack.yaml``) describing an :ref:`environment
|
||||
<environment-configuration>`.
|
||||
You can also add any of these as inline configuration in ``spack.yaml``
|
||||
in an :ref:`environment <environment-configuration>`.
|
||||
|
||||
-----------
|
||||
YAML Format
|
||||
@@ -73,12 +72,9 @@ are six configuration scopes. From lowest to highest:
|
||||
Spack instance per project) or for site-wide settings on a multi-user
|
||||
machine (e.g., for a common Spack instance).
|
||||
|
||||
#. **plugin**: Read from a Python project's entry points. Settings here affect
|
||||
all instances of Spack running with the same Python installation. This scope takes higher precedence than site, system, and default scopes.
|
||||
|
||||
#. **user**: Stored in the home directory: ``~/.spack/``. These settings
|
||||
affect all instances of Spack and take higher precedence than site,
|
||||
system, plugin, or defaults scopes.
|
||||
system, or defaults scopes.
|
||||
|
||||
#. **custom**: Stored in a custom directory specified by ``--config-scope``.
|
||||
If multiple scopes are listed on the command line, they are ordered
|
||||
@@ -199,45 +195,6 @@ with MPICH. You can create different configuration scopes for use with
|
||||
mpi: [mpich]
|
||||
|
||||
|
||||
.. _plugin-scopes:
|
||||
|
||||
^^^^^^^^^^^^^
|
||||
Plugin scopes
|
||||
^^^^^^^^^^^^^
|
||||
|
||||
.. note::
|
||||
Python version >= 3.8 is required to enable plugin configuration.
|
||||
|
||||
Spack can be made aware of configuration scopes that are installed as part of a python package. To do so, register a function that returns the scope's path to the ``"spack.config"`` entry point. Consider the Python package ``my_package`` that includes Spack configurations:
|
||||
|
||||
.. code-block:: console
|
||||
|
||||
my-package/
|
||||
├── src
|
||||
│ ├── my_package
|
||||
│ │ ├── __init__.py
|
||||
│ │ └── spack/
|
||||
│ │ │ └── config.yaml
|
||||
└── pyproject.toml
|
||||
|
||||
adding the following to ``my_package``'s ``pyproject.toml`` will make ``my_package``'s ``spack/`` configurations visible to Spack when ``my_package`` is installed:
|
||||
|
||||
.. code-block:: toml
|
||||
|
||||
[project.entry_points."spack.config"]
|
||||
my_package = "my_package:get_config_path"
|
||||
|
||||
The function ``my_package.get_extension_path`` in ``my_package/__init__.py`` might look like
|
||||
|
||||
.. code-block:: python
|
||||
|
||||
import importlib.resources
|
||||
|
||||
def get_config_path():
|
||||
dirname = importlib.resources.files("my_package").joinpath("spack")
|
||||
if dirname.exists():
|
||||
return str(dirname)
|
||||
|
||||
.. _platform-scopes:
|
||||
|
||||
------------------------
|
||||
@@ -270,9 +227,6 @@ You can get the name to use for ``<platform>`` by running ``spack arch
|
||||
--platform``. The system config scope has a ``<platform>`` section for
|
||||
sites at which ``/etc`` is mounted on multiple heterogeneous machines.
|
||||
|
||||
|
||||
.. _config-scope-precedence:
|
||||
|
||||
----------------
|
||||
Scope Precedence
|
||||
----------------
|
||||
@@ -285,13 +239,6 @@ lower-precedence settings. Completely ignoring higher-level configuration
|
||||
options is supported with the ``::`` notation for keys (see
|
||||
:ref:`config-overrides` below).
|
||||
|
||||
There are also special notations for string concatenation and precendense override:
|
||||
|
||||
* ``+:`` will force *prepending* strings or lists. For lists, this is the default behavior.
|
||||
* ``-:`` works similarly, but for *appending* values.
|
||||
|
||||
:ref:`config-prepend-append`
|
||||
|
||||
^^^^^^^^^^^
|
||||
Simple keys
|
||||
^^^^^^^^^^^
|
||||
@@ -332,47 +279,6 @@ command:
|
||||
- ~/.spack/stage
|
||||
|
||||
|
||||
.. _config-prepend-append:
|
||||
|
||||
^^^^^^^^^^^^^^^^^^^^
|
||||
String Concatenation
|
||||
^^^^^^^^^^^^^^^^^^^^
|
||||
|
||||
Above, the user ``config.yaml`` *completely* overrides specific settings in the
|
||||
default ``config.yaml``. Sometimes, it is useful to add a suffix/prefix
|
||||
to a path or name. To do this, you can use the ``-:`` notation for *append*
|
||||
string concatenation at the end of a key in a configuration file. For example:
|
||||
|
||||
.. code-block:: yaml
|
||||
:emphasize-lines: 1
|
||||
:caption: ~/.spack/config.yaml
|
||||
|
||||
config:
|
||||
install_tree-: /my/custom/suffix/
|
||||
|
||||
Spack will then append to the lower-precedence configuration under the
|
||||
``install_tree-:`` section:
|
||||
|
||||
.. code-block:: console
|
||||
|
||||
$ spack config get config
|
||||
config:
|
||||
install_tree: /some/other/directory/my/custom/suffix
|
||||
build_stage:
|
||||
- $tempdir/$user/spack-stage
|
||||
- ~/.spack/stage
|
||||
|
||||
|
||||
Similarly, ``+:`` can be used to *prepend* to a path or name:
|
||||
|
||||
.. code-block:: yaml
|
||||
:emphasize-lines: 1
|
||||
:caption: ~/.spack/config.yaml
|
||||
|
||||
config:
|
||||
install_tree+: /my/custom/suffix/
|
||||
|
||||
|
||||
.. _config-overrides:
|
||||
|
||||
^^^^^^^^^^^^^^^^^^^^^^^^^^
|
||||
@@ -488,7 +394,7 @@ are indicated at the start of the path with ``~`` or ``~user``.
|
||||
Spack-specific variables
|
||||
^^^^^^^^^^^^^^^^^^^^^^^^
|
||||
|
||||
Spack understands over a dozen special variables. These are:
|
||||
Spack understands several special variables. These are:
|
||||
|
||||
* ``$env``: name of the currently active :ref:`environment <environments>`
|
||||
* ``$spack``: path to the prefix of this Spack installation
|
||||
@@ -499,19 +405,6 @@ Spack understands over a dozen special variables. These are:
|
||||
* ``$user``: name of the current user
|
||||
* ``$user_cache_path``: user cache directory (``~/.spack`` unless
|
||||
:ref:`overridden <local-config-overrides>`)
|
||||
* ``$architecture``: the architecture triple of the current host, as
|
||||
detected by Spack.
|
||||
* ``$arch``: alias for ``$architecture``.
|
||||
* ``$platform``: the platform of the current host, as detected by Spack.
|
||||
* ``$operating_system``: the operating system of the current host, as
|
||||
detected by the ``distro`` python module.
|
||||
* ``$os``: alias for ``$operating_system``.
|
||||
* ``$target``: the ISA target for the current host, as detected by
|
||||
ArchSpec. E.g. ``skylake`` or ``neoverse-n1``.
|
||||
* ``$target_family``. The target family for the current host, as
|
||||
detected by ArchSpec. E.g. ``x86_64`` or ``aarch64``.
|
||||
* ``$date``: the current date in the format YYYY-MM-DD
|
||||
|
||||
|
||||
Note that, as with shell variables, you can write these as ``$varname``
|
||||
or with braces to distinguish the variable from surrounding characters:
|
||||
@@ -656,7 +549,7 @@ down the problem:
|
||||
|
||||
You can see above that the ``build_jobs`` and ``debug`` settings are
|
||||
built in and are not overridden by a configuration file. The
|
||||
``verify_ssl`` setting comes from the ``--insecure`` option on the
|
||||
``verify_ssl`` setting comes from the ``--insceure`` option on the
|
||||
command line. ``dirty`` and ``install_tree`` come from the custom
|
||||
scopes ``./my-scope`` and ``./my-scope-2``, and all other configuration
|
||||
options come from the default configuration files that ship with Spack.
|
||||
|
@@ -1,4 +1,4 @@
|
||||
.. Copyright 2013-2024 Lawrence Livermore National Security, LLC and other
|
||||
.. Copyright 2013-2022 Lawrence Livermore National Security, LLC and other
|
||||
Spack Project Developers. See the top-level COPYRIGHT file for details.
|
||||
|
||||
SPDX-License-Identifier: (Apache-2.0 OR MIT)
|
||||
@@ -9,96 +9,24 @@
|
||||
Container Images
|
||||
================
|
||||
|
||||
Spack :ref:`environments` can easily be turned into container images. This page
|
||||
outlines two ways in which this can be done:
|
||||
|
||||
1. By installing the environment on the host system, and copying the installations
|
||||
into the container image. This approach does not require any tools like Docker
|
||||
or Singularity to be installed.
|
||||
2. By generating a Docker or Singularity recipe that can be used to build the
|
||||
container image. In this approach, Spack builds the software inside the
|
||||
container runtime, not on the host system.
|
||||
|
||||
The first approach is easiest if you already have an installed environment,
|
||||
the second approach gives more control over the container image.
|
||||
|
||||
---------------------------
|
||||
From existing installations
|
||||
---------------------------
|
||||
|
||||
If you already have a Spack environment installed on your system, you can
|
||||
share the binaries as an OCI compatible container image. To get started you
|
||||
just have to configure and OCI registry and run ``spack buildcache push``.
|
||||
|
||||
.. code-block:: console
|
||||
|
||||
# Create and install an environment in the current directory
|
||||
spack env create -d .
|
||||
spack -e . add pkg-a pkg-b
|
||||
spack -e . install
|
||||
|
||||
# Configure the registry
|
||||
spack -e . mirror add --oci-username ... --oci-password ... container-registry oci://example.com/name/image
|
||||
|
||||
# Push the image
|
||||
spack -e . buildcache push --update-index --base-image ubuntu:22.04 --tag my_env container-registry
|
||||
|
||||
The resulting container image can then be run as follows:
|
||||
|
||||
.. code-block:: console
|
||||
|
||||
$ docker run -it example.com/name/image:my_env
|
||||
|
||||
The image generated by Spack consists of the specified base image with each package from the
|
||||
environment as a separate layer on top. The image is minimal by construction, it only contains the
|
||||
environment roots and its runtime dependencies.
|
||||
|
||||
.. note::
|
||||
|
||||
When using registries like GHCR and Docker Hub, the ``--oci-password`` flag is not
|
||||
the password for your account, but a personal access token you need to generate separately.
|
||||
|
||||
The specified ``--base-image`` should have a libc that is compatible with the host system.
|
||||
For example if your host system is Ubuntu 20.04, you can use ``ubuntu:20.04``, ``ubuntu:22.04``
|
||||
or newer: the libc in the container image must be at least the version of the host system,
|
||||
assuming ABI compatibility. It is also perfectly fine to use a completely different
|
||||
Linux distribution as long as the libc is compatible.
|
||||
|
||||
For convenience, Spack also turns the OCI registry into a :ref:`build cache <binary_caches_oci>`,
|
||||
so that future ``spack install`` of the environment will simply pull the binaries from the
|
||||
registry instead of doing source builds. The flag ``--update-index`` is needed to make Spack
|
||||
take the build cache into account when concretizing.
|
||||
|
||||
.. note::
|
||||
|
||||
When generating container images in CI, the approach above is recommended when CI jobs
|
||||
already run in a sandboxed environment. You can simply use ``spack`` directly
|
||||
in the CI job and push the resulting image to a registry. Subsequent CI jobs should
|
||||
run faster because Spack can install from the same registry instead of rebuilding from
|
||||
sources.
|
||||
|
||||
---------------------------------------------
|
||||
Generating recipes for Docker and Singularity
|
||||
---------------------------------------------
|
||||
|
||||
Apart from copying existing installations into container images, Spack can also
|
||||
generate recipes for container images. This is useful if you want to run Spack
|
||||
itself in a sandboxed environment instead of on the host system.
|
||||
|
||||
Since recipes need a little bit more boilerplate than
|
||||
Spack :ref:`environments` are a great tool to create container images, but
|
||||
preparing one that is suitable for production requires some more boilerplate
|
||||
than just:
|
||||
|
||||
.. code-block:: docker
|
||||
|
||||
COPY spack.yaml /environment
|
||||
RUN spack -e /environment install
|
||||
|
||||
Spack provides a command to generate customizable recipes for container images. Customizations
|
||||
include minimizing the size of the image, installing packages in the base image using the system
|
||||
package manager, and setting up a proper entrypoint to run the image.
|
||||
Additional actions may be needed to minimize the size of the
|
||||
container, or to update the system software that is installed in the base
|
||||
image, or to set up a proper entrypoint to run the image. These tasks are
|
||||
usually both necessary and repetitive, so Spack comes with a command
|
||||
to generate recipes for container images starting from a ``spack.yaml``.
|
||||
|
||||
~~~~~~~~~~~~~~~~~~~~
|
||||
--------------------
|
||||
A Quick Introduction
|
||||
~~~~~~~~~~~~~~~~~~~~
|
||||
--------------------
|
||||
|
||||
Consider having a Spack environment like the following:
|
||||
|
||||
@@ -109,8 +37,8 @@ Consider having a Spack environment like the following:
|
||||
- gromacs+mpi
|
||||
- mpich
|
||||
|
||||
Producing a ``Dockerfile`` from it is as simple as changing directories to
|
||||
where the ``spack.yaml`` file is stored and running the following command:
|
||||
Producing a ``Dockerfile`` from it is as simple as moving to the directory
|
||||
where the ``spack.yaml`` file is stored and giving the following command:
|
||||
|
||||
.. code-block:: console
|
||||
|
||||
@@ -176,9 +104,9 @@ configuration are discussed in details in the sections below.
|
||||
|
||||
.. _container_spack_images:
|
||||
|
||||
~~~~~~~~~~~~~~~~~~~~~~~~~~
|
||||
--------------------------
|
||||
Spack Images on Docker Hub
|
||||
~~~~~~~~~~~~~~~~~~~~~~~~~~
|
||||
--------------------------
|
||||
|
||||
Docker images with Spack preinstalled and ready to be used are
|
||||
built when a release is tagged, or nightly on ``develop``. The images
|
||||
@@ -194,15 +122,15 @@ The OS that are currently supported are summarized in the table below:
|
||||
* - Operating System
|
||||
- Base Image
|
||||
- Spack Image
|
||||
* - Ubuntu 18.04
|
||||
- ``ubuntu:18.04``
|
||||
- ``spack/ubuntu-bionic``
|
||||
* - Ubuntu 20.04
|
||||
- ``ubuntu:20.04``
|
||||
- ``spack/ubuntu-focal``
|
||||
* - Ubuntu 22.04
|
||||
- ``ubuntu:22.04``
|
||||
- ``spack/ubuntu-jammy``
|
||||
* - Ubuntu 24.04
|
||||
- ``ubuntu:24.04``
|
||||
- ``spack/ubuntu-noble``
|
||||
* - CentOS 7
|
||||
- ``centos:7``
|
||||
- ``spack/centos7``
|
||||
@@ -215,26 +143,6 @@ The OS that are currently supported are summarized in the table below:
|
||||
* - Amazon Linux 2
|
||||
- ``amazonlinux:2``
|
||||
- ``spack/amazon-linux``
|
||||
* - AlmaLinux 8
|
||||
- ``almalinux:8``
|
||||
- ``spack/almalinux8``
|
||||
* - AlmaLinux 9
|
||||
- ``almalinux:9``
|
||||
- ``spack/almalinux9``
|
||||
* - Rocky Linux 8
|
||||
- ``rockylinux:8``
|
||||
- ``spack/rockylinux8``
|
||||
* - Rocky Linux 9
|
||||
- ``rockylinux:9``
|
||||
- ``spack/rockylinux9``
|
||||
* - Fedora Linux 39
|
||||
- ``fedora:39``
|
||||
- ``spack/fedora39``
|
||||
* - Fedora Linux 40
|
||||
- ``fedora:40``
|
||||
- ``spack/fedora40``
|
||||
|
||||
|
||||
|
||||
All the images are tagged with the corresponding release of Spack:
|
||||
|
||||
@@ -248,9 +156,9 @@ by Spack use them as default base images for their ``build`` stage,
|
||||
even though handles to use custom base images provided by users are
|
||||
available to accommodate complex use cases.
|
||||
|
||||
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
|
||||
Configuring the Container Recipe
|
||||
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
|
||||
---------------------------------
|
||||
Creating Images From Environments
|
||||
---------------------------------
|
||||
|
||||
Any Spack Environment can be used for the automatic generation of container
|
||||
recipes. Sensible defaults are provided for things like the base image or the
|
||||
@@ -284,25 +192,31 @@ under the ``container`` attribute of environments:
|
||||
final:
|
||||
- libgomp
|
||||
|
||||
# Extra instructions
|
||||
extra_instructions:
|
||||
final: |
|
||||
RUN echo 'export PS1="\[$(tput bold)\]\[$(tput setaf 1)\][gromacs]\[$(tput setaf 2)\]\u\[$(tput sgr0)\]:\w $ "' >> ~/.bashrc
|
||||
|
||||
# Labels for the image
|
||||
labels:
|
||||
app: "gromacs"
|
||||
mpi: "mpich"
|
||||
|
||||
A detailed description of the options available can be found in the :ref:`container_config_options` section.
|
||||
A detailed description of the options available can be found in the
|
||||
:ref:`container_config_options` section.
|
||||
|
||||
~~~~~~~~~~~~~~~~~~~
|
||||
-------------------
|
||||
Setting Base Images
|
||||
~~~~~~~~~~~~~~~~~~~
|
||||
-------------------
|
||||
|
||||
The ``images`` subsection is used to select both the image where
|
||||
Spack builds the software and the image where the built software
|
||||
is installed. This attribute can be set in different ways and
|
||||
which one to use depends on the use case at hand.
|
||||
|
||||
""""""""""""""""""""""""""""""""""""""""
|
||||
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
|
||||
Use Official Spack Images From Dockerhub
|
||||
""""""""""""""""""""""""""""""""""""""""
|
||||
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
|
||||
|
||||
To generate a recipe that uses an official Docker image from the
|
||||
Spack organization to build the software and the corresponding official OS image
|
||||
@@ -507,9 +421,9 @@ responsibility to ensure that:
|
||||
Therefore we don't recommend its use in cases that can be otherwise
|
||||
covered by the simplified mode shown first.
|
||||
|
||||
~~~~~~~~~~~~~~~~~~~~~~~~~~~~
|
||||
----------------------------
|
||||
Singularity Definition Files
|
||||
~~~~~~~~~~~~~~~~~~~~~~~~~~~~
|
||||
----------------------------
|
||||
|
||||
In addition to producing recipes in ``Dockerfile`` format Spack can produce
|
||||
Singularity Definition Files by just changing the value of the ``format``
|
||||
@@ -530,132 +444,11 @@ attribute:
|
||||
The minimum version of Singularity required to build a SIF (Singularity Image Format)
|
||||
image from the recipes generated by Spack is ``3.5.3``.
|
||||
|
||||
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
|
||||
Extending the Jinja2 Templates
|
||||
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
|
||||
|
||||
The Dockerfile and the Singularity definition file that Spack can generate are based on
|
||||
a few Jinja2 templates that are rendered according to the environment being containerized.
|
||||
Even though Spack allows a great deal of customization by just setting appropriate values for
|
||||
the configuration options, sometimes that is not enough.
|
||||
|
||||
In those cases, a user can directly extend the template that Spack uses to render the image
|
||||
to e.g. set additional environment variables or perform specific operations either before or
|
||||
after a given stage of the build. Let's consider as an example the following structure:
|
||||
|
||||
.. code-block:: console
|
||||
|
||||
$ tree /opt/environment
|
||||
/opt/environment
|
||||
├── data
|
||||
│ └── data.csv
|
||||
├── spack.yaml
|
||||
├── data
|
||||
└── templates
|
||||
└── container
|
||||
└── CustomDockerfile
|
||||
|
||||
containing both the custom template extension and the environment manifest file. To use a custom
|
||||
template, the environment must register the directory containing it, and declare its use under the
|
||||
``container`` configuration:
|
||||
|
||||
.. code-block:: yaml
|
||||
:emphasize-lines: 7-8,12
|
||||
|
||||
spack:
|
||||
specs:
|
||||
- hdf5~mpi
|
||||
concretizer:
|
||||
unify: true
|
||||
config:
|
||||
template_dirs:
|
||||
- /opt/environment/templates
|
||||
container:
|
||||
format: docker
|
||||
depfile: true
|
||||
template: container/CustomDockerfile
|
||||
|
||||
The template extension can override two blocks, named ``build_stage`` and ``final_stage``, similarly to
|
||||
the example below:
|
||||
|
||||
.. code-block::
|
||||
:emphasize-lines: 3,8
|
||||
|
||||
{% extends "container/Dockerfile" %}
|
||||
{% block build_stage %}
|
||||
RUN echo "Start building"
|
||||
{{ super() }}
|
||||
{% endblock %}
|
||||
{% block final_stage %}
|
||||
{{ super() }}
|
||||
COPY data /share/myapp/data
|
||||
{% endblock %}
|
||||
|
||||
The Dockerfile is generated by running:
|
||||
|
||||
.. code-block:: console
|
||||
|
||||
$ spack -e /opt/environment containerize
|
||||
|
||||
Note that the environment must be active for spack to read the template.
|
||||
The recipe that gets generated contains the two extra instruction that we added in our template extension:
|
||||
|
||||
.. code-block:: Dockerfile
|
||||
:emphasize-lines: 4,43
|
||||
|
||||
# Build stage with Spack pre-installed and ready to be used
|
||||
FROM spack/ubuntu-jammy:latest as builder
|
||||
|
||||
RUN echo "Start building"
|
||||
|
||||
# What we want to install and how we want to install it
|
||||
# is specified in a manifest file (spack.yaml)
|
||||
RUN mkdir /opt/spack-environment \
|
||||
&& (echo "spack:" \
|
||||
&& echo " specs:" \
|
||||
&& echo " - hdf5~mpi" \
|
||||
&& echo " concretizer:" \
|
||||
&& echo " unify: true" \
|
||||
&& echo " config:" \
|
||||
&& echo " template_dirs:" \
|
||||
&& echo " - /tmp/environment/templates" \
|
||||
&& echo " install_tree: /opt/software" \
|
||||
&& echo " view: /opt/view") > /opt/spack-environment/spack.yaml
|
||||
|
||||
# Install the software, remove unnecessary deps
|
||||
RUN cd /opt/spack-environment && spack env activate . && spack concretize && spack env depfile -o Makefile && make -j $(nproc) && spack gc -y
|
||||
|
||||
# Strip all the binaries
|
||||
RUN find -L /opt/view/* -type f -exec readlink -f '{}' \; | \
|
||||
xargs file -i | \
|
||||
grep 'charset=binary' | \
|
||||
grep 'x-executable\|x-archive\|x-sharedlib' | \
|
||||
awk -F: '{print $1}' | xargs strip -s
|
||||
|
||||
# Modifications to the environment that are necessary to run
|
||||
RUN cd /opt/spack-environment && \
|
||||
spack env activate --sh -d . >> /etc/profile.d/z10_spack_environment.sh
|
||||
|
||||
# Bare OS image to run the installed executables
|
||||
FROM ubuntu:22.04
|
||||
|
||||
COPY --from=builder /opt/spack-environment /opt/spack-environment
|
||||
COPY --from=builder /opt/software /opt/software
|
||||
COPY --from=builder /opt/._view /opt/._view
|
||||
COPY --from=builder /opt/view /opt/view
|
||||
COPY --from=builder /etc/profile.d/z10_spack_environment.sh /etc/profile.d/z10_spack_environment.sh
|
||||
|
||||
COPY data /share/myapp/data
|
||||
|
||||
ENTRYPOINT ["/bin/bash", "--rcfile", "/etc/profile", "-l", "-c", "$*", "--" ]
|
||||
CMD [ "/bin/bash" ]
|
||||
|
||||
|
||||
.. _container_config_options:
|
||||
|
||||
~~~~~~~~~~~~~~~~~~~~~~~
|
||||
-----------------------
|
||||
Configuration Reference
|
||||
~~~~~~~~~~~~~~~~~~~~~~~
|
||||
-----------------------
|
||||
|
||||
The tables below describe all the configuration options that are currently supported
|
||||
to customize the generation of container recipes:
|
||||
@@ -671,10 +464,6 @@ to customize the generation of container recipes:
|
||||
- The format of the recipe
|
||||
- ``docker`` or ``singularity``
|
||||
- Yes
|
||||
* - ``depfile``
|
||||
- Whether to use a depfile for installation, or not
|
||||
- True or False (default)
|
||||
- No
|
||||
* - ``images:os``
|
||||
- Operating system used as a base for the image
|
||||
- See :ref:`containers-supported-os`
|
||||
@@ -709,7 +498,7 @@ to customize the generation of container recipes:
|
||||
- No
|
||||
* - ``os_packages:command``
|
||||
- Tool used to manage system packages
|
||||
- ``apt``, ``yum``, ``dnf``, ``dnf_epel``, ``zypper``, ``apk``, ``yum_amazon``
|
||||
- ``apt``, ``yum``
|
||||
- Only with custom base images
|
||||
* - ``os_packages:update``
|
||||
- Whether or not to update the list of available packages
|
||||
@@ -723,6 +512,14 @@ to customize the generation of container recipes:
|
||||
- System packages needed at run-time
|
||||
- Valid packages for the current OS
|
||||
- No
|
||||
* - ``extra_instructions:build``
|
||||
- Extra instructions (e.g. `RUN`, `COPY`, etc.) at the end of the ``build`` stage
|
||||
- Anything understood by the current ``format``
|
||||
- No
|
||||
* - ``extra_instructions:final``
|
||||
- Extra instructions (e.g. `RUN`, `COPY`, etc.) at the end of the ``final`` stage
|
||||
- Anything understood by the current ``format``
|
||||
- No
|
||||
* - ``labels``
|
||||
- Labels to tag the image
|
||||
- Pairs of key-value strings
|
||||
@@ -752,13 +549,13 @@ to customize the generation of container recipes:
|
||||
- Description string
|
||||
- No
|
||||
|
||||
~~~~~~~~~~~~~~
|
||||
--------------
|
||||
Best Practices
|
||||
~~~~~~~~~~~~~~
|
||||
--------------
|
||||
|
||||
"""
|
||||
^^^
|
||||
MPI
|
||||
"""
|
||||
^^^
|
||||
Due to the dependency on Fortran for OpenMPI, which is the spack default
|
||||
implementation, consider adding ``gfortran`` to the ``apt-get install`` list.
|
||||
|
||||
@@ -769,9 +566,9 @@ For execution on HPC clusters, it can be helpful to import the docker
|
||||
image into Singularity in order to start a program with an *external*
|
||||
MPI. Otherwise, also add ``openssh-server`` to the ``apt-get install`` list.
|
||||
|
||||
""""
|
||||
^^^^
|
||||
CUDA
|
||||
""""
|
||||
^^^^
|
||||
Starting from CUDA 9.0, Nvidia provides minimal CUDA images based on
|
||||
Ubuntu. Please see `their instructions <https://hub.docker.com/r/nvidia/cuda/>`_.
|
||||
Avoid double-installing CUDA by adding, e.g.
|
||||
@@ -790,9 +587,9 @@ to your ``spack.yaml``.
|
||||
Users will either need ``nvidia-docker`` or e.g. Singularity to *execute*
|
||||
device kernels.
|
||||
|
||||
"""""""""""""""""""""""""
|
||||
^^^^^^^^^^^^^^^^^^^^^^^^^
|
||||
Docker on Windows and OSX
|
||||
"""""""""""""""""""""""""
|
||||
^^^^^^^^^^^^^^^^^^^^^^^^^
|
||||
|
||||
On Mac OS and Windows, docker runs on a hypervisor that is not allocated much
|
||||
memory by default, and some spack packages may fail to build due to lack of
|
||||
|
@@ -1,4 +1,4 @@
|
||||
.. Copyright 2013-2024 Lawrence Livermore National Security, LLC and other
|
||||
.. Copyright 2013-2022 Lawrence Livermore National Security, LLC and other
|
||||
Spack Project Developers. See the top-level COPYRIGHT file for details.
|
||||
|
||||
SPDX-License-Identifier: (Apache-2.0 OR MIT)
|
||||
@@ -118,7 +118,7 @@ make another change, test that change, etc. We use `pytest
|
||||
<http://pytest.org/>`_ as our tests framework, and these types of
|
||||
arguments are just passed to the ``pytest`` command underneath. See `the
|
||||
pytest docs
|
||||
<https://doc.pytest.org/en/latest/how-to/usage.html#specifying-which-tests-to-run>`_
|
||||
<http://doc.pytest.org/en/latest/usage.html#specifying-tests-selecting-tests>`_
|
||||
for more details on test selection syntax.
|
||||
|
||||
``spack unit-test`` has a few special options that can help you
|
||||
@@ -147,7 +147,7 @@ you want to know about. For example, to see just the tests in
|
||||
|
||||
You can also combine any of these options with a ``pytest`` keyword
|
||||
search. See the `pytest usage docs
|
||||
<https://doc.pytest.org/en/latest/how-to/usage.html#specifying-which-tests-to-run>`_
|
||||
<https://docs.pytest.org/en/stable/usage.html#specifying-tests-selecting-tests>`_:
|
||||
for more details on test selection syntax. For example, to see the names of all tests that have "spec"
|
||||
or "concretize" somewhere in their names:
|
||||
|
||||
@@ -253,6 +253,27 @@ to update them.
|
||||
multiple runs of ``spack style`` just to re-compute line numbers and
|
||||
makes it much easier to fix errors directly off of the CI output.
|
||||
|
||||
.. warning::
|
||||
|
||||
Flake8 and ``pep8-naming`` require a number of dependencies in order
|
||||
to run. If you installed ``py-flake8`` and ``py-pep8-naming``, the
|
||||
easiest way to ensure the right packages are on your ``PYTHONPATH`` is
|
||||
to run::
|
||||
|
||||
spack activate py-flake8
|
||||
spack activate pep8-naming
|
||||
|
||||
so that all of the dependencies are symlinked to a central
|
||||
location. If you see an error message like:
|
||||
|
||||
.. code-block:: console
|
||||
|
||||
Traceback (most recent call last):
|
||||
File: "/usr/bin/flake8", line 5, in <module>
|
||||
from pkg_resources import load_entry_point
|
||||
ImportError: No module named pkg_resources
|
||||
|
||||
that means Flake8 couldn't find setuptools in your ``PYTHONPATH``.
|
||||
|
||||
^^^^^^^^^^^^^^^^^^^
|
||||
Documentation Tests
|
||||
@@ -288,9 +309,13 @@ All of these can be installed with Spack, e.g.
|
||||
|
||||
.. code-block:: console
|
||||
|
||||
$ spack load py-sphinx py-sphinx-rtd-theme py-sphinxcontrib-programoutput
|
||||
$ spack activate py-sphinx
|
||||
$ spack activate py-sphinx-rtd-theme
|
||||
$ spack activate py-sphinxcontrib-programoutput
|
||||
|
||||
so that all of the dependencies are added to PYTHONPATH. If you see an error message
|
||||
so that all of the dependencies are symlinked into that Python's
|
||||
tree. Alternatively, you could arrange for their library
|
||||
directories to be added to PYTHONPATH. If you see an error message
|
||||
like:
|
||||
|
||||
.. code-block:: console
|
||||
@@ -310,11 +335,53 @@ Once all of the dependencies are installed, you can try building the documentati
|
||||
$ make clean
|
||||
$ make
|
||||
|
||||
If you see any warning or error messages, you will have to correct those before your PR
|
||||
is accepted. If you are editing the documentation, you should be running the
|
||||
documentation tests to make sure there are no errors. Documentation changes can result
|
||||
in some obfuscated warning messages. If you don't understand what they mean, feel free
|
||||
to ask when you submit your PR.
|
||||
If you see any warning or error messages, you will have to correct those before
|
||||
your PR is accepted.
|
||||
|
||||
If you are editing the documentation, you should obviously be running the
|
||||
documentation tests. But even if you are simply adding a new package, your
|
||||
changes could cause the documentation tests to fail:
|
||||
|
||||
.. code-block:: console
|
||||
|
||||
package_list.rst:8745: WARNING: Block quote ends without a blank line; unexpected unindent.
|
||||
|
||||
At first, this error message will mean nothing to you, since you didn't edit
|
||||
that file. Until you look at line 8745 of the file in question:
|
||||
|
||||
.. code-block:: rst
|
||||
|
||||
Description:
|
||||
NetCDF is a set of software libraries and self-describing, machine-
|
||||
independent data formats that support the creation, access, and sharing
|
||||
of array-oriented scientific data.
|
||||
|
||||
Our documentation includes :ref:`a list of all Spack packages <package-list>`.
|
||||
If you add a new package, its docstring is added to this page. The problem in
|
||||
this case was that the docstring looked like:
|
||||
|
||||
.. code-block:: python
|
||||
|
||||
class Netcdf(Package):
|
||||
"""
|
||||
NetCDF is a set of software libraries and self-describing,
|
||||
machine-independent data formats that support the creation,
|
||||
access, and sharing of array-oriented scientific data.
|
||||
"""
|
||||
|
||||
Docstrings cannot start with a newline character, or else Sphinx will complain.
|
||||
Instead, they should look like:
|
||||
|
||||
.. code-block:: python
|
||||
|
||||
class Netcdf(Package):
|
||||
"""NetCDF is a set of software libraries and self-describing,
|
||||
machine-independent data formats that support the creation,
|
||||
access, and sharing of array-oriented scientific data."""
|
||||
|
||||
Documentation changes can result in much more obfuscated warning messages.
|
||||
If you don't understand what they mean, feel free to ask when you submit
|
||||
your PR.
|
||||
|
||||
--------
|
||||
Coverage
|
||||
|
@@ -1,4 +1,4 @@
|
||||
.. Copyright 2013-2024 Lawrence Livermore National Security, LLC and other
|
||||
.. Copyright 2013-2022 Lawrence Livermore National Security, LLC and other
|
||||
Spack Project Developers. See the top-level COPYRIGHT file for details.
|
||||
|
||||
SPDX-License-Identifier: (Apache-2.0 OR MIT)
|
||||
@@ -149,9 +149,11 @@ grouped by functionality.
|
||||
Package-related modules
|
||||
^^^^^^^^^^^^^^^^^^^^^^^
|
||||
|
||||
:mod:`spack.package_base`
|
||||
Contains the :class:`~spack.package_base.PackageBase` class, which
|
||||
is the superclass for all packages in Spack.
|
||||
:mod:`spack.package`
|
||||
Contains the :class:`~spack.package_base.Package` class, which
|
||||
is the superclass for all packages in Spack. Methods on ``Package``
|
||||
implement all phases of the :ref:`package lifecycle
|
||||
<package-lifecycle>` and manage the build process.
|
||||
|
||||
:mod:`spack.util.naming`
|
||||
Contains functions for mapping between Spack package names,
|
||||
@@ -175,11 +177,14 @@ Spec-related modules
|
||||
^^^^^^^^^^^^^^^^^^^^
|
||||
|
||||
:mod:`spack.spec`
|
||||
Contains :class:`~spack.spec.Spec`. Also implements most of the logic for concretization
|
||||
Contains :class:`~spack.spec.Spec` and :class:`~spack.spec.SpecParser`.
|
||||
Also implements most of the logic for normalization and concretization
|
||||
of specs.
|
||||
|
||||
:mod:`spack.parser`
|
||||
Contains :class:`~spack.parser.SpecParser` and functions related to parsing specs.
|
||||
:mod:`spack.parse`
|
||||
Contains some base classes for implementing simple recursive descent
|
||||
parsers: :class:`~spack.parse.Parser` and :class:`~spack.parse.Lexer`.
|
||||
Used by :class:`~spack.spec.SpecParser`.
|
||||
|
||||
:mod:`spack.concretize`
|
||||
Contains :class:`~spack.concretize.Concretizer` implementation,
|
||||
@@ -232,7 +237,7 @@ Spack Subcommands
|
||||
Unit tests
|
||||
^^^^^^^^^^
|
||||
|
||||
``spack.test``
|
||||
:mod:`spack.test`
|
||||
Implements Spack's test suite. Add a module and put its name in
|
||||
the test suite in ``__init__.py`` to add more unit tests.
|
||||
|
||||
@@ -357,23 +362,91 @@ If there is a hook that you would like and is missing, you can propose to add a
|
||||
``pre_install(spec)``
|
||||
"""""""""""""""""""""
|
||||
|
||||
A ``pre_install`` hook is run within the install subprocess, directly before the install starts.
|
||||
It expects a single argument of a spec.
|
||||
A ``pre_install`` hook is run within an install subprocess, directly before
|
||||
the install starts. It expects a single argument of a spec, and is run in
|
||||
a multiprocessing subprocess. Note that if you see ``pre_install`` functions associated with packages these are not hooks
|
||||
as we have defined them here, but rather callback functions associated with
|
||||
a package install.
|
||||
|
||||
|
||||
"""""""""""""""""""""""""""""""""""""
|
||||
``post_install(spec, explicit=None)``
|
||||
"""""""""""""""""""""""""""""""""""""
|
||||
""""""""""""""""""""""
|
||||
``post_install(spec)``
|
||||
""""""""""""""""""""""
|
||||
|
||||
A ``post_install`` hook is run within the install subprocess, directly after the install finishes,
|
||||
but before the build stage is removed and the spec is registered in the database. It expects two
|
||||
arguments: spec and an optional boolean indicating whether this spec is being installed explicitly.
|
||||
A ``post_install`` hook is run within an install subprocess, directly after
|
||||
the install finishes, but before the build stage is removed. If you
|
||||
write one of these hooks, you should expect it to accept a spec as the only
|
||||
argument. This is run in a multiprocessing subprocess. This ``post_install`` is
|
||||
also seen in packages, but in this context not related to the hooks described
|
||||
here.
|
||||
|
||||
""""""""""""""""""""""""""""""""""""""""""""""""""""
|
||||
``pre_uninstall(spec)`` and ``post_uninstall(spec)``
|
||||
""""""""""""""""""""""""""""""""""""""""""""""""""""
|
||||
|
||||
These hooks are currently used for cleaning up module files after uninstall.
|
||||
""""""""""""""""""""""""""
|
||||
``on_install_start(spec)``
|
||||
""""""""""""""""""""""""""
|
||||
|
||||
This hook is run at the beginning of ``lib/spack/spack/installer.py``,
|
||||
in the install function of a ``PackageInstaller``,
|
||||
and importantly is not part of a build process, but before it. This is when
|
||||
we have just newly grabbed the task, and are preparing to install. If you
|
||||
write a hook of this type, you should provide the spec to it.
|
||||
|
||||
.. code-block:: python
|
||||
|
||||
def on_install_start(spec):
|
||||
"""On start of an install, we want to...
|
||||
"""
|
||||
print('on_install_start')
|
||||
|
||||
|
||||
""""""""""""""""""""""""""""
|
||||
``on_install_success(spec)``
|
||||
""""""""""""""""""""""""""""
|
||||
|
||||
This hook is run on a successful install, and is also run inside the build
|
||||
process, akin to ``post_install``. The main difference is that this hook
|
||||
is run outside of the context of the stage directory, meaning after the
|
||||
build stage has been removed and the user is alerted that the install was
|
||||
successful. If you need to write a hook that is run on success of a particular
|
||||
phase, you should use ``on_phase_success``.
|
||||
|
||||
""""""""""""""""""""""""""""
|
||||
``on_install_failure(spec)``
|
||||
""""""""""""""""""""""""""""
|
||||
|
||||
This hook is run given an install failure that happens outside of the build
|
||||
subprocess, but somewhere in ``installer.py`` when something else goes wrong.
|
||||
If you need to write a hook that is relevant to a failure within a build
|
||||
process, you would want to instead use ``on_phase_failure``.
|
||||
|
||||
|
||||
"""""""""""""""""""""""""""
|
||||
``on_install_cancel(spec)``
|
||||
"""""""""""""""""""""""""""
|
||||
|
||||
The same, but triggered if a spec install is cancelled for any reason.
|
||||
|
||||
|
||||
"""""""""""""""""""""""""""""""""""""""""""""""
|
||||
``on_phase_success(pkg, phase_name, log_file)``
|
||||
"""""""""""""""""""""""""""""""""""""""""""""""
|
||||
|
||||
This hook is run within the install subprocess, and specifically when a phase
|
||||
successfully finishes. Since we are interested in the package, the name of
|
||||
the phase, and any output from it, we require:
|
||||
|
||||
- **pkg**: the package variable, which also has the attached spec at ``pkg.spec``
|
||||
- **phase_name**: the name of the phase that was successful (e.g., configure)
|
||||
- **log_file**: the path to the file with output, in case you need to inspect or otherwise interact with it.
|
||||
|
||||
"""""""""""""""""""""""""""""""""""""""""""""
|
||||
``on_phase_error(pkg, phase_name, log_file)``
|
||||
"""""""""""""""""""""""""""""""""""""""""""""
|
||||
|
||||
In the case of an error during a phase, we might want to trigger some event
|
||||
with a hook, and this is the purpose of this particular hook. Akin to
|
||||
``on_phase_success`` we require the same variables - the package that failed,
|
||||
the name of the phase, and the log file where we might find errors.
|
||||
|
||||
|
||||
^^^^^^^^^^^^^^^^^^^^^^
|
||||
@@ -404,7 +477,7 @@ use my new hook as follows:
|
||||
.. code-block:: python
|
||||
|
||||
def post_log_write(message, level):
|
||||
"""Do something custom with the message and level every time we write
|
||||
"""Do something custom with the messsage and level every time we write
|
||||
to the log
|
||||
"""
|
||||
print('running post_log_write!')
|
||||
@@ -552,11 +625,11 @@ With either interpreter you can run a single command:
|
||||
|
||||
.. code-block:: console
|
||||
|
||||
$ spack python -c 'from spack.spec import Spec; Spec("python").concretized()'
|
||||
...
|
||||
$ spack python -c 'import distro; distro.linux_distribution()'
|
||||
('Ubuntu', '18.04', 'Bionic Beaver')
|
||||
|
||||
$ spack python -i ipython -c 'from spack.spec import Spec; Spec("python").concretized()'
|
||||
Out[1]: ...
|
||||
$ spack python -i ipython -c 'import distro; distro.linux_distribution()'
|
||||
Out[1]: ('Ubuntu', '18.04', 'Bionic Beaver')
|
||||
|
||||
or a file:
|
||||
|
||||
@@ -1071,9 +1144,9 @@ Announcing a release
|
||||
|
||||
We announce releases in all of the major Spack communication channels.
|
||||
Publishing the release takes care of GitHub. The remaining channels are
|
||||
X, Slack, and the mailing list. Here are the steps:
|
||||
Twitter, Slack, and the mailing list. Here are the steps:
|
||||
|
||||
#. Announce the release on X.
|
||||
#. Announce the release on Twitter.
|
||||
|
||||
* Compose the tweet on the ``@spackpm`` account per the
|
||||
``spack-twitter`` slack channel.
|
||||
|
@@ -1,4 +1,4 @@
|
||||
.. Copyright 2013-2024 Lawrence Livermore National Security, LLC and other
|
||||
.. Copyright 2013-2022 Lawrence Livermore National Security, LLC and other
|
||||
Spack Project Developers. See the top-level COPYRIGHT file for details.
|
||||
|
||||
SPDX-License-Identifier: (Apache-2.0 OR MIT)
|
||||
@@ -58,9 +58,9 @@ Using Environments
|
||||
Here we follow a typical use case of creating, concretizing,
|
||||
installing and loading an environment.
|
||||
|
||||
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
|
||||
Creating a managed Environment
|
||||
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
|
||||
^^^^^^^^^^^^^^^^^^^^^^^^^^^^
|
||||
Creating a named Environment
|
||||
^^^^^^^^^^^^^^^^^^^^^^^^^^^^
|
||||
|
||||
An environment is created by:
|
||||
|
||||
@@ -72,8 +72,7 @@ Spack then creates the directory ``var/spack/environments/myenv``.
|
||||
|
||||
.. note::
|
||||
|
||||
All managed environments by default are stored in the ``var/spack/environments`` folder.
|
||||
This location can be changed by setting the ``environments_root`` variable in ``config.yaml``.
|
||||
All named environments are stored in the ``var/spack/environments`` folder.
|
||||
|
||||
In the ``var/spack/environments/myenv`` directory, Spack creates the
|
||||
file ``spack.yaml`` and the hidden directory ``.spack-env``.
|
||||
@@ -94,9 +93,9 @@ an Environment, the ``.spack-env`` directory also contains:
|
||||
* ``logs/``: A directory containing the build logs for the packages
|
||||
in this Environment.
|
||||
|
||||
Spack Environments can also be created from either a manifest file
|
||||
(usually but not necessarily named, ``spack.yaml``) or a lockfile.
|
||||
To create an Environment from a manifest:
|
||||
Spack Environments can also be created from either a ``spack.yaml``
|
||||
manifest or a ``spack.lock`` lockfile. To create an Environment from a
|
||||
``spack.yaml`` manifest:
|
||||
|
||||
.. code-block:: console
|
||||
|
||||
@@ -142,17 +141,6 @@ user's prompt to begin with the environment name in brackets.
|
||||
$ spack env activate -p myenv
|
||||
[myenv] $ ...
|
||||
|
||||
The ``activate`` command can also be used to create a new environment if it does not already
|
||||
exist.
|
||||
|
||||
.. code-block:: console
|
||||
|
||||
$ spack env activate --create -p myenv
|
||||
# ...
|
||||
# [creates if myenv does not exist yet]
|
||||
# ...
|
||||
[myenv] $ ...
|
||||
|
||||
To deactivate an environment, use the command:
|
||||
|
||||
.. code-block:: console
|
||||
@@ -172,36 +160,21 @@ environment will remove the view from the user environment.
|
||||
Anonymous Environments
|
||||
^^^^^^^^^^^^^^^^^^^^^^
|
||||
|
||||
Apart from managed environments, Spack also supports anonymous environments.
|
||||
|
||||
Anonymous environments can be placed in any directory of choice.
|
||||
|
||||
.. note::
|
||||
|
||||
When uninstalling packages, Spack asks the user to confirm the removal of packages
|
||||
that are still used in a managed environment. This is not the case for anonymous
|
||||
environments.
|
||||
|
||||
To create an anonymous environment, use one of the following commands:
|
||||
Any directory can be treated as an environment if it contains a file
|
||||
``spack.yaml``. To load an anonymous environment, use:
|
||||
|
||||
.. code-block:: console
|
||||
|
||||
$ spack env create --dir my_env
|
||||
$ spack env create ./my_env
|
||||
$ spack env activate -d /path/to/directory
|
||||
|
||||
As a shorthand, you can also create an anonymous environment upon activation if it does not
|
||||
already exist:
|
||||
Anonymous specs can be created in place using the command:
|
||||
|
||||
.. code-block:: console
|
||||
|
||||
$ spack env activate --create ./my_env
|
||||
|
||||
For convenience, Spack can also place an anonymous environment in a temporary directory for you:
|
||||
|
||||
.. code-block:: console
|
||||
|
||||
$ spack env activate --temp
|
||||
$ spack env create -d .
|
||||
|
||||
In this case Spack simply creates a spack.yaml file in the requested
|
||||
directory.
|
||||
|
||||
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
|
||||
Environment Sensitive Commands
|
||||
@@ -260,8 +233,8 @@ packages will be listed as roots of the Environment.
|
||||
|
||||
All of the Spack commands that act on the list of installed specs are
|
||||
Environment-sensitive in this way, including ``install``,
|
||||
``uninstall``, ``find``, ``extensions``, and more. In the
|
||||
:ref:`environment-configuration` section we will discuss
|
||||
``uninstall``, ``activate``, ``deactivate``, ``find``, ``extensions``,
|
||||
and more. In the :ref:`environment-configuration` section we will discuss
|
||||
Environment-sensitive commands further.
|
||||
|
||||
^^^^^^^^^^^^^^^^^^^^^
|
||||
@@ -373,7 +346,7 @@ the Environment and then install the concretized specs.
|
||||
(see :ref:`build-jobs`). To speed up environment builds further, independent
|
||||
packages can be installed in parallel by launching more Spack instances. For
|
||||
example, the following will build at most four packages in parallel using
|
||||
three background jobs:
|
||||
three background jobs:
|
||||
|
||||
.. code-block:: console
|
||||
|
||||
@@ -421,29 +394,12 @@ version (and other constraints) passed as the spec argument to the
|
||||
|
||||
For packages with ``git`` attributes, git branches, tags, and commits can
|
||||
also be used as valid concrete versions (see :ref:`version-specifier`).
|
||||
This means that for a package ``foo``, ``spack develop foo@git.main`` will clone
|
||||
This means that for a package ``foo``, ``spack develop foo@git.main`` will clone
|
||||
the ``main`` branch of the package, and ``spack install`` will install from
|
||||
that git clone if ``foo`` is in the environment.
|
||||
Further development on ``foo`` can be tested by reinstalling the environment,
|
||||
and eventually committed and pushed to the upstream git repo.
|
||||
|
||||
If the package being developed supports out-of-source builds then users can use the
|
||||
``--build_directory`` flag to control the location and name of the build directory.
|
||||
This is a shortcut to set the ``package_attributes:build_directory`` in the
|
||||
``packages`` configuration (see :ref:`assigning-package-attributes`).
|
||||
The supplied location will become the build-directory for that package in all future builds.
|
||||
|
||||
.. warning::
|
||||
Potential pitfalls of setting the build directory
|
||||
Spack does not check for out-of-source build compatibility with the packages and
|
||||
so the onerous of making sure the package supports out-of-source builds is on
|
||||
the user.
|
||||
For example, most ``autotool`` and ``makefile`` packages do not support out-of-source builds
|
||||
while all ``CMake`` packages do.
|
||||
Understanding these nuances are on the software developers and we strongly encourage
|
||||
developers to only redirect the build directory if they understand their package's
|
||||
build-system.
|
||||
|
||||
^^^^^^^
|
||||
Loading
|
||||
^^^^^^^
|
||||
@@ -460,125 +416,6 @@ Sourcing that file in Bash will make the environment available to the
|
||||
user; and can be included in ``.bashrc`` files, etc. The ``loads``
|
||||
file may also be copied out of the environment, renamed, etc.
|
||||
|
||||
|
||||
.. _environment_include_concrete:
|
||||
|
||||
------------------------------
|
||||
Included Concrete Environments
|
||||
------------------------------
|
||||
|
||||
Spack environments can create an environment based off of information in already
|
||||
established environments. You can think of it as a combination of existing
|
||||
environments. It will gather information from the existing environment's
|
||||
``spack.lock`` and use that during the creation of this included concrete
|
||||
environment. When an included concrete environment is created it will generate
|
||||
a ``spack.lock`` file for the newly created environment.
|
||||
|
||||
|
||||
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
|
||||
Creating included environments
|
||||
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
|
||||
To create a combined concrete environment, you must have at least one existing
|
||||
concrete environment. You will use the command ``spack env create`` with the
|
||||
argument ``--include-concrete`` followed by the name or path of the environment
|
||||
you'd like to include. Here is an example of how to create a combined environment
|
||||
from the command line.
|
||||
|
||||
.. code-block:: console
|
||||
|
||||
$ spack env create myenv
|
||||
$ spack -e myenv add python
|
||||
$ spack -e myenv concretize
|
||||
$ spack env create --include-concrete myenv included_env
|
||||
|
||||
|
||||
You can also include an environment directly in the ``spack.yaml`` file. It
|
||||
involves adding the ``include_concrete`` heading in the yaml followed by the
|
||||
absolute path to the independent environments.
|
||||
|
||||
.. code-block:: yaml
|
||||
|
||||
spack:
|
||||
specs: []
|
||||
concretizer:
|
||||
unify: true
|
||||
include_concrete:
|
||||
- /absolute/path/to/environment1
|
||||
- /absolute/path/to/environment2
|
||||
|
||||
|
||||
Once the ``spack.yaml`` has been updated you must concretize the environment to
|
||||
get the concrete specs from the included environments.
|
||||
|
||||
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
|
||||
Updating an included environment
|
||||
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
|
||||
If changes were made to the base environment and you want that reflected in the
|
||||
included environment you will need to reconcretize both the base environment and the
|
||||
included environment for the change to be implemented. For example:
|
||||
|
||||
.. code-block:: console
|
||||
|
||||
$ spack env create myenv
|
||||
$ spack -e myenv add python
|
||||
$ spack -e myenv concretize
|
||||
$ spack env create --include-concrete myenv included_env
|
||||
|
||||
|
||||
$ spack -e myenv find
|
||||
==> In environment myenv
|
||||
==> Root specs
|
||||
python
|
||||
|
||||
==> 0 installed packages
|
||||
|
||||
|
||||
$ spack -e included_env find
|
||||
==> In environment included_env
|
||||
==> No root specs
|
||||
==> Included specs
|
||||
python
|
||||
|
||||
==> 0 installed packages
|
||||
|
||||
Here we see that ``included_env`` has access to the python package through
|
||||
the ``myenv`` environment. But if we were to add another spec to ``myenv``,
|
||||
``included_env`` will not be able to access the new information.
|
||||
|
||||
.. code-block:: console
|
||||
|
||||
$ spack -e myenv add perl
|
||||
$ spack -e myenv concretize
|
||||
$ spack -e myenv find
|
||||
==> In environment myenv
|
||||
==> Root specs
|
||||
perl python
|
||||
|
||||
==> 0 installed packages
|
||||
|
||||
|
||||
$ spack -e included_env find
|
||||
==> In environment included_env
|
||||
==> No root specs
|
||||
==> Included specs
|
||||
python
|
||||
|
||||
==> 0 installed packages
|
||||
|
||||
It isn't until you run the ``spack concretize`` command that the combined
|
||||
environment will get the updated information from the reconcretized base environmennt.
|
||||
|
||||
.. code-block:: console
|
||||
|
||||
$ spack -e included_env concretize
|
||||
$ spack -e included_env find
|
||||
==> In environment included_env
|
||||
==> No root specs
|
||||
==> Included specs
|
||||
perl python
|
||||
|
||||
==> 0 installed packages
|
||||
|
||||
.. _environment-configuration:
|
||||
|
||||
------------------------
|
||||
@@ -619,11 +456,11 @@ a ``packages.yaml`` file) could contain:
|
||||
.. code-block:: yaml
|
||||
|
||||
spack:
|
||||
# ...
|
||||
...
|
||||
packages:
|
||||
all:
|
||||
compiler: [intel]
|
||||
# ...
|
||||
...
|
||||
|
||||
This configuration sets the default compiler for all packages to
|
||||
``intel``.
|
||||
@@ -682,49 +519,8 @@ available from the yaml file.
|
||||
^^^^^^^^^^^^^^^^^^^
|
||||
Spec concretization
|
||||
^^^^^^^^^^^^^^^^^^^
|
||||
An environment can be concretized in three different modes and the behavior active under
|
||||
any environment is determined by the ``concretizer:unify`` configuration option.
|
||||
|
||||
The *default* mode is to unify all specs:
|
||||
|
||||
.. code-block:: yaml
|
||||
|
||||
spack:
|
||||
specs:
|
||||
- hdf5+mpi
|
||||
- zlib@1.2.8
|
||||
concretizer:
|
||||
unify: true
|
||||
|
||||
This means that any package in the environment corresponds to a single concrete spec. In
|
||||
the above example, when ``hdf5`` depends down the line of ``zlib``, it is required to
|
||||
take ``zlib@1.2.8`` instead of a newer version. This mode of concretization is
|
||||
particularly useful when environment views are used: if every package occurs in
|
||||
only one flavor, it is usually possible to merge all install directories into a view.
|
||||
|
||||
A downside of unified concretization is that it can be overly strict. For example, a
|
||||
concretization error would happen when both ``hdf5+mpi`` and ``hdf5~mpi`` are specified
|
||||
in an environment.
|
||||
|
||||
The second mode is to *unify when possible*: this makes concretization of root specs
|
||||
more independendent. Instead of requiring reuse of dependencies across different root
|
||||
specs, it is only maximized:
|
||||
|
||||
.. code-block:: yaml
|
||||
|
||||
spack:
|
||||
specs:
|
||||
- hdf5~mpi
|
||||
- hdf5+mpi
|
||||
- zlib@1.2.8
|
||||
concretizer:
|
||||
unify: when_possible
|
||||
|
||||
This means that both ``hdf5`` installations will use ``zlib@1.2.8`` as a dependency even
|
||||
if newer versions of that library are available.
|
||||
|
||||
The third mode of operation is to concretize root specs entirely independently by
|
||||
disabling unified concretization:
|
||||
An environment can be concretized in three different modes and the behavior active under any environment
|
||||
is determined by the ``concretizer:unify`` property. By default specs are concretized *separately*, one after the other:
|
||||
|
||||
.. code-block:: yaml
|
||||
|
||||
@@ -736,11 +532,45 @@ disabling unified concretization:
|
||||
concretizer:
|
||||
unify: false
|
||||
|
||||
In this example ``hdf5`` is concretized separately, and does not consider ``zlib@1.2.8``
|
||||
as a constraint or preference. Instead, it will take the latest possible version.
|
||||
This mode of operation permits to deploy a full software stack where multiple configurations of the same package
|
||||
need to be installed alongside each other using the best possible selection of transitive dependencies. The downside
|
||||
is that redundancy of installations is disregarded completely, and thus environments might be more bloated than
|
||||
strictly needed. In the example above, for instance, if a version of ``zlib`` newer than ``1.2.8`` is known to Spack,
|
||||
then it will be used for both ``hdf5`` installations.
|
||||
|
||||
The last two concretization options are typically useful for system administrators and
|
||||
user support groups providing a large software stack for their HPC center.
|
||||
If redundancy of the environment is a concern, Spack provides a way to install it *together where possible*,
|
||||
i.e. trying to maximize reuse of dependencies across different specs:
|
||||
|
||||
.. code-block:: yaml
|
||||
|
||||
spack:
|
||||
specs:
|
||||
- hdf5~mpi
|
||||
- hdf5+mpi
|
||||
- zlib@1.2.8
|
||||
concretizer:
|
||||
unify: when_possible
|
||||
|
||||
Also in this case Spack allows having multiple configurations of the same package, but privileges the reuse of
|
||||
specs over other factors. Going back to our example, this means that both ``hdf5`` installations will use
|
||||
``zlib@1.2.8`` as a dependency even if newer versions of that library are available.
|
||||
Central installations done at HPC centers by system administrators or user support groups are a common case
|
||||
that fits either of these two modes.
|
||||
|
||||
Environments can also be configured to concretize all the root specs *together*, in a self-consistent way, to
|
||||
ensure that each package in the environment comes with a single configuration:
|
||||
|
||||
.. code-block:: yaml
|
||||
|
||||
spack:
|
||||
specs:
|
||||
- hdf5+mpi
|
||||
- zlib@1.2.8
|
||||
concretizer:
|
||||
unify: true
|
||||
|
||||
This mode of operation is usually what is required by software developers that want to deploy their development
|
||||
environment and have a single view of it in the filesystem.
|
||||
|
||||
.. note::
|
||||
|
||||
@@ -751,11 +581,10 @@ user support groups providing a large software stack for their HPC center.
|
||||
|
||||
.. admonition:: Re-concretization of user specs
|
||||
|
||||
The ``spack concretize`` command without additional arguments will *not* change any
|
||||
previously concretized specs. This may prevent it from finding a solution when using
|
||||
``unify: true``, and it may prevent it from finding a minimal solution when using
|
||||
``unify: when_possible``. You can force Spack to ignore the existing concrete environment
|
||||
with ``spack concretize -f``.
|
||||
When concretizing specs *together* or *together where possible* the entire set of specs will be
|
||||
re-concretized after any addition of new user specs, to ensure that
|
||||
the environment remains consistent / minimal. When instead the specs are concretized
|
||||
separately only the new specs will be re-concretized after any addition.
|
||||
|
||||
^^^^^^^^^^^^^
|
||||
Spec Matrices
|
||||
@@ -930,7 +759,6 @@ For example, the following environment has three root packages:
|
||||
This allows for a much-needed reduction in redundancy between packages
|
||||
and constraints.
|
||||
|
||||
|
||||
----------------
|
||||
Filesystem Views
|
||||
----------------
|
||||
@@ -970,7 +798,7 @@ directories.
|
||||
.. code-block:: yaml
|
||||
|
||||
spack:
|
||||
# ...
|
||||
...
|
||||
view:
|
||||
mpis:
|
||||
root: /path/to/view
|
||||
@@ -1014,7 +842,7 @@ automatically named ``default``, so that
|
||||
.. code-block:: yaml
|
||||
|
||||
spack:
|
||||
# ...
|
||||
...
|
||||
view: True
|
||||
|
||||
is equivalent to
|
||||
@@ -1022,7 +850,7 @@ is equivalent to
|
||||
.. code-block:: yaml
|
||||
|
||||
spack:
|
||||
# ...
|
||||
...
|
||||
view:
|
||||
default:
|
||||
root: .spack-env/view
|
||||
@@ -1032,7 +860,7 @@ and
|
||||
.. code-block:: yaml
|
||||
|
||||
spack:
|
||||
# ...
|
||||
...
|
||||
view: /path/to/view
|
||||
|
||||
is equivalent to
|
||||
@@ -1040,7 +868,7 @@ is equivalent to
|
||||
.. code-block:: yaml
|
||||
|
||||
spack:
|
||||
# ...
|
||||
...
|
||||
view:
|
||||
default:
|
||||
root: /path/to/view
|
||||
@@ -1079,20 +907,9 @@ function, as shown in the example below:
|
||||
.. code-block:: yaml
|
||||
|
||||
projections:
|
||||
zlib: "{name}-{version}"
|
||||
^mpi: "{name}-{version}/{^mpi.name}-{^mpi.version}-{compiler.name}-{compiler.version}"
|
||||
all: "{name}-{version}/{compiler.name}-{compiler.version}"
|
||||
|
||||
Projections also permit environment and spack configuration variable
|
||||
expansions as shown below:
|
||||
|
||||
.. code-block:: yaml
|
||||
|
||||
projections:
|
||||
all: "{name}-{version}/{compiler.name}-{compiler.version}/$date/$SYSTEM_ENV_VARIBLE"
|
||||
|
||||
where ``$date`` is the spack configuration variable that will expand with the ``YYYY-MM-DD``
|
||||
format and ``$SYSTEM_ENV_VARIABLE`` is an environment variable defined in the shell.
|
||||
zlib: {name}-{version}
|
||||
^mpi: {name}-{version}/{^mpi.name}-{^mpi.version}-{compiler.name}-{compiler.version}
|
||||
all: {name}-{version}/{compiler.name}-{compiler.version}
|
||||
|
||||
The entries in the projections configuration file must all be either
|
||||
specs or the keyword ``all``. For each spec, the projection used will
|
||||
@@ -1164,7 +981,7 @@ other targets to depend on the environment installation.
|
||||
|
||||
A typical workflow is as follows:
|
||||
|
||||
.. code-block:: console
|
||||
.. code:: console
|
||||
|
||||
spack env create -d .
|
||||
spack -e . add perl
|
||||
@@ -1215,7 +1032,7 @@ gets installed and is available for use in the ``env`` target.
|
||||
$(SPACK) -e . concretize -f
|
||||
|
||||
env.mk: spack.lock
|
||||
$(SPACK) -e . env depfile -o $@ --make-prefix spack
|
||||
$(SPACK) -e . env depfile -o $@ --make-target-prefix spack
|
||||
|
||||
env: spack/env
|
||||
$(info Environment installed!)
|
||||
@@ -1238,79 +1055,27 @@ the include is conditional.
|
||||
.. note::
|
||||
|
||||
When including generated ``Makefile``\s, it is important to use
|
||||
the ``--make-prefix`` flag and use the non-phony target
|
||||
``<prefix>/env`` as prerequisite, instead of the phony target
|
||||
``<prefix>/all``.
|
||||
the ``--make-target-prefix`` flag and use the non-phony target
|
||||
``<target-prefix>/env`` as prerequisite, instead of the phony target
|
||||
``<target-prefix>/all``.
|
||||
|
||||
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
|
||||
Building a subset of the environment
|
||||
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
|
||||
|
||||
The generated ``Makefile``\s contain install targets for each spec, identified
|
||||
by ``<name>-<version>-<hash>``. This allows you to install only a subset of the
|
||||
packages in the environment. When packages are unique in the environment, it's
|
||||
enough to know the name and let tab-completion fill out the version and hash.
|
||||
|
||||
The following phony targets are available: ``install/<spec>`` to install the
|
||||
spec with its dependencies, and ``install-deps/<spec>`` to *only* install
|
||||
The generated ``Makefile``\s contain install targets for each spec. Given the hash
|
||||
of a particular spec, you can use the ``.install/<hash>`` target to install the
|
||||
spec with its dependencies. There is also ``.install-deps/<hash>`` to *only* install
|
||||
its dependencies. This can be useful when certain flags should only apply to
|
||||
dependencies. Below we show a use case where a spec is installed with verbose
|
||||
output (``spack install --verbose``) while its dependencies are installed silently:
|
||||
|
||||
.. code-block:: console
|
||||
.. code:: console
|
||||
|
||||
$ spack env depfile -o Makefile
|
||||
$ spack env depfile -o Makefile --make-target-prefix my_env
|
||||
|
||||
# Install dependencies in parallel, only show a log on error.
|
||||
$ make -j16 install-deps/python-3.11.0-<hash> SPACK_INSTALL_FLAGS=--show-log-on-error
|
||||
$ make -j16 my_env/.install-deps/<hash> SPACK_INSTALL_FLAGS=--show-log-on-error
|
||||
|
||||
# Install the root spec with verbose output.
|
||||
$ make -j16 install/python-3.11.0-<hash> SPACK_INSTALL_FLAGS=--verbose
|
||||
|
||||
^^^^^^^^^^^^^^^^^^^^^^^^^
|
||||
Adding post-install hooks
|
||||
^^^^^^^^^^^^^^^^^^^^^^^^^
|
||||
|
||||
Another advanced use-case of generated ``Makefile``\s is running a post-install
|
||||
command for each package. These "hooks" could be anything from printing a
|
||||
post-install message, running tests, or pushing just-built binaries to a buildcache.
|
||||
|
||||
This can be accomplished through the generated ``[<prefix>/]SPACK_PACKAGE_IDS``
|
||||
variable. Assuming we have an active and concrete environment, we generate the
|
||||
associated ``Makefile`` with a prefix ``example``:
|
||||
|
||||
.. code-block:: console
|
||||
|
||||
$ spack env depfile -o env.mk --make-prefix example
|
||||
|
||||
And we now include it in a different ``Makefile``, in which we create a target
|
||||
``example/push/%`` with ``%`` referring to a package identifier. This target
|
||||
depends on the particular package installation. In this target we automatically
|
||||
have the target-specific ``HASH`` and ``SPEC`` variables at our disposal. They
|
||||
are respectively the spec hash (excluding leading ``/``), and a human-readable spec.
|
||||
Finally, we have an entrypoint target ``push`` that will update the buildcache
|
||||
index once every package is pushed. Note how this target uses the generated
|
||||
``example/SPACK_PACKAGE_IDS`` variable to define its prerequisites.
|
||||
|
||||
.. code:: Makefile
|
||||
|
||||
SPACK ?= spack
|
||||
BUILDCACHE_DIR = $(CURDIR)/tarballs
|
||||
|
||||
.PHONY: all
|
||||
|
||||
all: push
|
||||
|
||||
include env.mk
|
||||
|
||||
example/push/%: example/install/%
|
||||
@mkdir -p $(dir $@)
|
||||
$(info About to push $(SPEC) to a buildcache)
|
||||
$(SPACK) -e . buildcache push --allow-root --only=package $(BUILDCACHE_DIR) /$(HASH)
|
||||
@touch $@
|
||||
|
||||
push: $(addprefix example/push/,$(example/SPACK_PACKAGE_IDS))
|
||||
$(info Updating the buildcache index)
|
||||
$(SPACK) -e . buildcache update-index $(BUILDCACHE_DIR)
|
||||
$(info Done!)
|
||||
@touch $@
|
||||
$ make -j16 my_env/.install/<hash> SPACK_INSTALL_FLAGS=--verbose
|
@@ -1,4 +1,4 @@
|
||||
.. Copyright 2013-2024 Lawrence Livermore National Security, LLC and other
|
||||
.. Copyright 2013-2022 Lawrence Livermore National Security, LLC and other
|
||||
Spack Project Developers. See the top-level COPYRIGHT file for details.
|
||||
|
||||
SPDX-License-Identifier: (Apache-2.0 OR MIT)
|
||||
@@ -9,42 +9,46 @@
|
||||
Custom Extensions
|
||||
=================
|
||||
|
||||
*Spack extensions* allow you to extend Spack capabilities by deploying your
|
||||
*Spack extensions* permit you to extend Spack capabilities by deploying your
|
||||
own custom commands or logic in an arbitrary location on your filesystem.
|
||||
This might be extremely useful e.g. to develop and maintain a command whose purpose is
|
||||
too specific to be considered for reintegration into the mainline or to
|
||||
evolve a command through its early stages before starting a discussion to merge
|
||||
it upstream.
|
||||
|
||||
From Spack's point of view an extension is any path in your filesystem which
|
||||
respects the following naming and layout for files:
|
||||
respects a prescribed naming and layout for files:
|
||||
|
||||
.. code-block:: console
|
||||
|
||||
spack-scripting/ # The top level directory must match the format 'spack-{extension_name}'
|
||||
├── pytest.ini # Optional file if the extension ships its own tests
|
||||
├── scripting # Folder that may contain modules that are needed for the extension commands
|
||||
│ ├── cmd # Folder containing extension commands
|
||||
│ │ └── filter.py # A new command that will be available
|
||||
│ └── functions.py # Module with internal details
|
||||
└── tests # Tests for this extension
|
||||
│ └── cmd # Folder containing extension commands
|
||||
│ └── filter.py # A new command that will be available
|
||||
├── tests # Tests for this extension
|
||||
│ ├── conftest.py
|
||||
│ └── test_filter.py
|
||||
└── templates # Templates that may be needed by the extension
|
||||
|
||||
In the example above, the extension is named *scripting*. It adds an additional command
|
||||
(``spack filter``) and unit tests to verify its behavior.
|
||||
In the example above the extension named *scripting* adds an additional command (``filter``)
|
||||
and unit tests to verify its behavior. The code for this example can be
|
||||
obtained by cloning the corresponding git repository:
|
||||
|
||||
The extension can import any core Spack module in its implementation. When loaded by
|
||||
the ``spack`` command, the extension itself is imported as a Python package in the
|
||||
``spack.extensions`` namespace. In the example above, since the extension is named
|
||||
"scripting", the corresponding Python module is ``spack.extensions.scripting``.
|
||||
|
||||
The code for this example extension can be obtained by cloning the corresponding git repository:
|
||||
.. TODO: write an ad-hoc "hello world" extension and make it part of the spack organization
|
||||
|
||||
.. code-block:: console
|
||||
|
||||
$ git -C /tmp clone https://github.com/spack/spack-scripting.git
|
||||
$ cd ~/
|
||||
$ mkdir tmp && cd tmp
|
||||
$ git clone https://github.com/alalazo/spack-scripting.git
|
||||
Cloning into 'spack-scripting'...
|
||||
remote: Counting objects: 11, done.
|
||||
remote: Compressing objects: 100% (7/7), done.
|
||||
remote: Total 11 (delta 0), reused 11 (delta 0), pack-reused 0
|
||||
Receiving objects: 100% (11/11), done.
|
||||
|
||||
As you can see by inspecting the sources, Python modules that are part of the extension
|
||||
can import any core Spack module.
|
||||
|
||||
---------------------------------
|
||||
Configure Spack to Use Extensions
|
||||
@@ -57,7 +61,7 @@ paths to ``config.yaml``. In the case of our example this means ensuring that:
|
||||
|
||||
config:
|
||||
extensions:
|
||||
- /tmp/spack-scripting
|
||||
- ~/tmp/spack-scripting
|
||||
|
||||
is part of your configuration file. Once this is setup any command that the extension provides
|
||||
will be available from the command line:
|
||||
@@ -82,68 +86,37 @@ will be available from the command line:
|
||||
--implicit select specs that are not installed or were installed implicitly
|
||||
--output OUTPUT where to dump the result
|
||||
|
||||
The corresponding unit tests can be run giving the appropriate options to ``spack unit-test``:
|
||||
The corresponding unit tests can be run giving the appropriate options
|
||||
to ``spack unit-test``:
|
||||
|
||||
.. code-block:: console
|
||||
|
||||
$ spack unit-test --extension=scripting
|
||||
========================================== test session starts ===========================================
|
||||
platform linux -- Python 3.11.5, pytest-7.4.3, pluggy-1.3.0
|
||||
rootdir: /home/culpo/github/spack-scripting
|
||||
configfile: pytest.ini
|
||||
testpaths: tests
|
||||
plugins: xdist-3.5.0
|
||||
|
||||
============================================================== test session starts ===============================================================
|
||||
platform linux2 -- Python 2.7.15rc1, pytest-3.2.5, py-1.4.34, pluggy-0.4.0
|
||||
rootdir: /home/mculpo/tmp/spack-scripting, inifile: pytest.ini
|
||||
collected 5 items
|
||||
|
||||
tests/test_filter.py ..... [100%]
|
||||
tests/test_filter.py ...XX
|
||||
============================================================ short test summary info =============================================================
|
||||
XPASS tests/test_filter.py::test_filtering_specs[flags3-specs3-expected3]
|
||||
XPASS tests/test_filter.py::test_filtering_specs[flags4-specs4-expected4]
|
||||
|
||||
========================================== slowest 30 durations ==========================================
|
||||
2.31s setup tests/test_filter.py::test_filtering_specs[kwargs0-specs0-expected0]
|
||||
0.57s call tests/test_filter.py::test_filtering_specs[kwargs2-specs2-expected2]
|
||||
0.56s call tests/test_filter.py::test_filtering_specs[kwargs4-specs4-expected4]
|
||||
0.54s call tests/test_filter.py::test_filtering_specs[kwargs3-specs3-expected3]
|
||||
0.54s call tests/test_filter.py::test_filtering_specs[kwargs1-specs1-expected1]
|
||||
0.48s call tests/test_filter.py::test_filtering_specs[kwargs0-specs0-expected0]
|
||||
0.01s setup tests/test_filter.py::test_filtering_specs[kwargs4-specs4-expected4]
|
||||
0.01s setup tests/test_filter.py::test_filtering_specs[kwargs2-specs2-expected2]
|
||||
0.01s setup tests/test_filter.py::test_filtering_specs[kwargs1-specs1-expected1]
|
||||
0.01s setup tests/test_filter.py::test_filtering_specs[kwargs3-specs3-expected3]
|
||||
|
||||
(5 durations < 0.005s hidden. Use -vv to show these durations.)
|
||||
=========================================== 5 passed in 5.06s ============================================
|
||||
|
||||
---------------------------------------
|
||||
Registering Extensions via Entry Points
|
||||
---------------------------------------
|
||||
|
||||
.. note::
|
||||
Python version >= 3.8 is required to register extensions via entry points.
|
||||
|
||||
Spack can be made aware of extensions that are installed as part of a python package. To do so, register a function that returns the extension path, or paths, to the ``"spack.extensions"`` entry point. Consider the Python package ``my_package`` that includes a Spack extension:
|
||||
|
||||
.. code-block:: console
|
||||
|
||||
my-package/
|
||||
├── src
|
||||
│ ├── my_package
|
||||
│ │ └── __init__.py
|
||||
│ └── spack-scripting/ # the spack extensions
|
||||
└── pyproject.toml
|
||||
|
||||
adding the following to ``my_package``'s ``pyproject.toml`` will make the ``spack-scripting`` extension visible to Spack when ``my_package`` is installed:
|
||||
|
||||
.. code-block:: toml
|
||||
|
||||
[project.entry_points."spack.extenions"]
|
||||
my_package = "my_package:get_extension_path"
|
||||
|
||||
The function ``my_package.get_extension_path`` in ``my_package/__init__.py`` might look like
|
||||
|
||||
.. code-block:: python
|
||||
|
||||
import importlib.resources
|
||||
|
||||
def get_extension_path():
|
||||
dirname = importlib.resources.files("my_package").joinpath("spack-scripting")
|
||||
if dirname.exists():
|
||||
return str(dirname)
|
||||
=========================================================== slowest 20 test durations ============================================================
|
||||
3.74s setup tests/test_filter.py::test_filtering_specs[flags0-specs0-expected0]
|
||||
0.17s call tests/test_filter.py::test_filtering_specs[flags3-specs3-expected3]
|
||||
0.16s call tests/test_filter.py::test_filtering_specs[flags2-specs2-expected2]
|
||||
0.15s call tests/test_filter.py::test_filtering_specs[flags1-specs1-expected1]
|
||||
0.13s call tests/test_filter.py::test_filtering_specs[flags4-specs4-expected4]
|
||||
0.08s call tests/test_filter.py::test_filtering_specs[flags0-specs0-expected0]
|
||||
0.04s teardown tests/test_filter.py::test_filtering_specs[flags4-specs4-expected4]
|
||||
0.00s setup tests/test_filter.py::test_filtering_specs[flags4-specs4-expected4]
|
||||
0.00s setup tests/test_filter.py::test_filtering_specs[flags3-specs3-expected3]
|
||||
0.00s setup tests/test_filter.py::test_filtering_specs[flags1-specs1-expected1]
|
||||
0.00s setup tests/test_filter.py::test_filtering_specs[flags2-specs2-expected2]
|
||||
0.00s teardown tests/test_filter.py::test_filtering_specs[flags2-specs2-expected2]
|
||||
0.00s teardown tests/test_filter.py::test_filtering_specs[flags1-specs1-expected1]
|
||||
0.00s teardown tests/test_filter.py::test_filtering_specs[flags0-specs0-expected0]
|
||||
0.00s teardown tests/test_filter.py::test_filtering_specs[flags3-specs3-expected3]
|
||||
====================================================== 3 passed, 2 xpassed in 4.51 seconds =======================================================
|
||||
|
@@ -1,4 +1,4 @@
|
||||
.. Copyright 2013-2024 Lawrence Livermore National Security, LLC and other
|
||||
.. Copyright 2013-2022 Lawrence Livermore National Security, LLC and other
|
||||
Spack Project Developers. See the top-level COPYRIGHT file for details.
|
||||
|
||||
SPDX-License-Identifier: (Apache-2.0 OR MIT)
|
||||
@@ -98,42 +98,40 @@ For example, this command:
|
||||
|
||||
.. code-block:: console
|
||||
|
||||
$ spack create https://ftp.osuosl.org/pub/blfs/conglomeration/libelf/libelf-0.8.13.tar.gz
|
||||
$ spack create http://www.mr511.de/software/libelf-0.8.13.tar.gz
|
||||
|
||||
creates a simple python file:
|
||||
|
||||
.. code-block:: python
|
||||
|
||||
from spack.package import *
|
||||
from spack import *
|
||||
|
||||
|
||||
class Libelf(AutotoolsPackage):
|
||||
class Libelf(Package):
|
||||
"""FIXME: Put a proper description of your package here."""
|
||||
|
||||
# FIXME: Add a proper url for your package's homepage here.
|
||||
homepage = "https://www.example.com"
|
||||
url = "https://ftp.osuosl.org/pub/blfs/conglomeration/libelf/libelf-0.8.13.tar.gz"
|
||||
homepage = "http://www.example.com"
|
||||
url = "http://www.mr511.de/software/libelf-0.8.13.tar.gz"
|
||||
|
||||
# FIXME: Add a list of GitHub accounts to
|
||||
# notify when the package is updated.
|
||||
# maintainers("github_user1", "github_user2")
|
||||
|
||||
version("0.8.13", sha256="591a9b4ec81c1f2042a97aa60564e0cb79d041c52faa7416acb38bc95bd2c76d")
|
||||
version('0.8.13', '4136d7b4c04df68b686570afa26988ac')
|
||||
|
||||
# FIXME: Add dependencies if required.
|
||||
# depends_on("foo")
|
||||
# depends_on('foo')
|
||||
|
||||
def configure_args(self):
|
||||
# FIXME: Add arguments other than --prefix
|
||||
# FIXME: If not needed delete this function
|
||||
args = []
|
||||
return args
|
||||
def install(self, spec, prefix):
|
||||
# FIXME: Modify the configure line to suit your build system here.
|
||||
configure('--prefix={0}'.format(prefix))
|
||||
|
||||
# FIXME: Add logic to build and install here.
|
||||
make()
|
||||
make('install')
|
||||
|
||||
It doesn't take much python coding to get from there to a working
|
||||
package:
|
||||
|
||||
.. literalinclude:: _spack_root/var/spack/repos/builtin/packages/libelf/package.py
|
||||
:lines: 5-
|
||||
:lines: 6-
|
||||
|
||||
Spack also provides wrapper functions around common commands like
|
||||
``configure``, ``make``, and ``cmake`` to make writing packages
|
||||
|
@@ -1,77 +0,0 @@
|
||||
.. Copyright 2013-2024 Lawrence Livermore National Security, LLC and other
|
||||
Spack Project Developers. See the top-level COPYRIGHT file for details.
|
||||
|
||||
SPDX-License-Identifier: (Apache-2.0 OR MIT)
|
||||
|
||||
==========================
|
||||
Frequently Asked Questions
|
||||
==========================
|
||||
|
||||
This page contains answers to frequently asked questions about Spack.
|
||||
If you have questions that are not answered here, feel free to ask on
|
||||
`Slack <https://slack.spack.io>`_ or `GitHub Discussions
|
||||
<https://github.com/spack/spack/discussions>`_. If you've learned the
|
||||
answer to a question that you think should be here, please consider
|
||||
contributing to this page.
|
||||
|
||||
.. _faq-concretizer-precedence:
|
||||
|
||||
-----------------------------------------------------
|
||||
Why does Spack pick particular versions and variants?
|
||||
-----------------------------------------------------
|
||||
|
||||
This question comes up in a variety of forms:
|
||||
|
||||
1. Why does Spack seem to ignore my package preferences from ``packages.yaml`` config?
|
||||
2. Why does Spack toggle a variant instead of using the default from the ``package.py`` file?
|
||||
|
||||
The short answer is that Spack always picks an optimal configuration
|
||||
based on a complex set of criteria\ [#f1]_. These criteria are more nuanced
|
||||
than always choosing the latest versions or default variants.
|
||||
|
||||
.. note::
|
||||
|
||||
As a rule of thumb: requirements + constraints > reuse > preferences > defaults.
|
||||
|
||||
The following set of criteria (from lowest to highest precedence) explain
|
||||
common cases where concretization output may seem surprising at first.
|
||||
|
||||
1. :ref:`Package preferences <package-preferences>` configured in ``packages.yaml``
|
||||
override variant defaults from ``package.py`` files, and influence the optimal
|
||||
ordering of versions. Preferences are specified as follows:
|
||||
|
||||
.. code-block:: yaml
|
||||
|
||||
packages:
|
||||
foo:
|
||||
version: [1.0, 1.1]
|
||||
variants: ~mpi
|
||||
|
||||
2. :ref:`Reuse concretization <concretizer-options>` configured in ``concretizer.yaml``
|
||||
overrides preferences, since it's typically faster to reuse an existing spec than to
|
||||
build a preferred one from sources. When build caches are enabled, specs may be reused
|
||||
from a remote location too. Reuse concretization is configured as follows:
|
||||
|
||||
.. code-block:: yaml
|
||||
|
||||
concretizer:
|
||||
reuse: dependencies # other options are 'true' and 'false'
|
||||
|
||||
3. :ref:`Package requirements <package-requirements>` configured in ``packages.yaml``,
|
||||
and constraints from the command line as well as ``package.py`` files override all
|
||||
of the above. Requirements are specified as follows:
|
||||
|
||||
.. code-block:: yaml
|
||||
|
||||
packages:
|
||||
foo:
|
||||
require:
|
||||
- "@1.2: +mpi"
|
||||
|
||||
Requirements and constraints restrict the set of possible solutions, while reuse
|
||||
behavior and preferences influence what an optimal solution looks like.
|
||||
|
||||
|
||||
.. rubric:: Footnotes
|
||||
|
||||
.. [#f1] The exact list of criteria can be retrieved with the ``spack solve`` command
|
@@ -1,4 +1,4 @@
|
||||
.. Copyright 2013-2024 Lawrence Livermore National Security, LLC and other
|
||||
.. Copyright 2013-2022 Lawrence Livermore National Security, LLC and other
|
||||
Spack Project Developers. See the top-level COPYRIGHT file for details.
|
||||
|
||||
SPDX-License-Identifier: (Apache-2.0 OR MIT)
|
||||
@@ -21,9 +21,8 @@ be present on the machine where Spack is run:
|
||||
:header-rows: 1
|
||||
|
||||
These requirements can be easily installed on most modern Linux systems;
|
||||
on macOS, the Command Line Tools package is required, and a full XCode suite
|
||||
may be necessary for some packages such as Qt and apple-gl. Spack is designed
|
||||
to run on HPC platforms like Cray. Not all packages should be expected
|
||||
on macOS, XCode is required. Spack is designed to run on HPC
|
||||
platforms like Cray. Not all packages should be expected
|
||||
to work on all platforms.
|
||||
|
||||
A build matrix showing which packages are working on which systems is shown below.
|
||||
@@ -41,9 +40,12 @@ A build matrix showing which packages are working on which systems is shown belo
|
||||
|
||||
.. code-block:: console
|
||||
|
||||
dnf install epel-release
|
||||
dnf group install "Development Tools"
|
||||
dnf install curl findutils gcc-gfortran gnupg2 hostname iproute redhat-lsb-core python3 python3-pip python3-setuptools unzip python3-boto3
|
||||
yum update -y
|
||||
yum install -y epel-release
|
||||
yum update -y
|
||||
yum --enablerepo epel groupinstall -y "Development Tools"
|
||||
yum --enablerepo epel install -y curl findutils gcc-c++ gcc gcc-gfortran git gnupg2 hostname iproute make patch python3 python3-pip python3-setuptools unzip
|
||||
python3 -m pip install boto3
|
||||
|
||||
.. tab-item:: macOS Brew
|
||||
|
||||
@@ -122,41 +124,88 @@ Spack provides two ways of bootstrapping ``clingo``: from pre-built binaries
|
||||
(default), or from sources. The fastest way to get started is to bootstrap from
|
||||
pre-built binaries.
|
||||
|
||||
The first time you concretize a spec, Spack will bootstrap automatically:
|
||||
.. note::
|
||||
|
||||
When bootstrapping from pre-built binaries, Spack currently requires
|
||||
``patchelf`` on Linux and ``otool`` on macOS. If ``patchelf`` is not in the
|
||||
``PATH``, Spack will build it from sources, and a C++ compiler is required.
|
||||
|
||||
The first time you concretize a spec, Spack will bootstrap in the background:
|
||||
|
||||
.. code-block:: console
|
||||
|
||||
$ spack spec zlib
|
||||
==> Bootstrapping clingo from pre-built binaries
|
||||
==> Fetching https://mirror.spack.io/bootstrap/github-actions/v0.4/build_cache/linux-centos7-x86_64-gcc-10.2.1-clingo-bootstrap-spack-ba5ijauisd3uuixtmactc36vps7yfsrl.spec.json
|
||||
==> Fetching https://mirror.spack.io/bootstrap/github-actions/v0.4/build_cache/linux-centos7-x86_64/gcc-10.2.1/clingo-bootstrap-spack/linux-centos7-x86_64-gcc-10.2.1-clingo-bootstrap-spack-ba5ijauisd3uuixtmactc36vps7yfsrl.spack
|
||||
==> Installing "clingo-bootstrap@spack%gcc@10.2.1~docs~ipo+python+static_libstdcpp build_type=Release arch=linux-centos7-x86_64" from a buildcache
|
||||
==> Bootstrapping patchelf from pre-built binaries
|
||||
==> Fetching https://mirror.spack.io/bootstrap/github-actions/v0.4/build_cache/linux-centos7-x86_64-gcc-10.2.1-patchelf-0.16.1-p72zyan5wrzuabtmzq7isa5mzyh6ahdp.spec.json
|
||||
==> Fetching https://mirror.spack.io/bootstrap/github-actions/v0.4/build_cache/linux-centos7-x86_64/gcc-10.2.1/patchelf-0.16.1/linux-centos7-x86_64-gcc-10.2.1-patchelf-0.16.1-p72zyan5wrzuabtmzq7isa5mzyh6ahdp.spack
|
||||
==> Installing "patchelf@0.16.1%gcc@10.2.1 ldflags="-static-libstdc++ -static-libgcc" build_system=autotools arch=linux-centos7-x86_64" from a buildcache
|
||||
$ time spack spec zlib
|
||||
Input spec
|
||||
--------------------------------
|
||||
zlib
|
||||
|
||||
Concretized
|
||||
--------------------------------
|
||||
zlib@1.2.13%gcc@9.4.0+optimize+pic+shared build_system=makefile arch=linux-ubuntu20.04-icelake
|
||||
zlib@1.2.11%gcc@7.5.0+optimize+pic+shared arch=linux-ubuntu18.04-zen
|
||||
|
||||
If for security concerns you cannot bootstrap ``clingo`` from pre-built
|
||||
binaries, you have to disable fetching the binaries we generated with Github Actions.
|
||||
real 0m20.023s
|
||||
user 0m18.351s
|
||||
sys 0m0.784s
|
||||
|
||||
After this command you'll see that ``clingo`` has been installed for Spack's own use:
|
||||
|
||||
.. code-block:: console
|
||||
|
||||
$ spack bootstrap disable github-actions-v0.4
|
||||
==> "github-actions-v0.4" is now disabled and will not be used for bootstrapping
|
||||
$ spack bootstrap disable github-actions-v0.3
|
||||
==> "github-actions-v0.3" is now disabled and will not be used for bootstrapping
|
||||
$ spack find -b
|
||||
==> Showing internal bootstrap store at "/root/.spack/bootstrap/store"
|
||||
==> 3 installed packages
|
||||
-- linux-rhel5-x86_64 / gcc@9.3.0 -------------------------------
|
||||
clingo-bootstrap@spack python@3.6
|
||||
|
||||
-- linux-ubuntu18.04-zen / gcc@7.5.0 ----------------------------
|
||||
patchelf@0.13
|
||||
|
||||
Subsequent calls to the concretizer will then be much faster:
|
||||
|
||||
.. code-block:: console
|
||||
|
||||
$ time spack spec zlib
|
||||
[ ... ]
|
||||
real 0m0.490s
|
||||
user 0m0.431s
|
||||
sys 0m0.041s
|
||||
|
||||
|
||||
If for security concerns you cannot bootstrap ``clingo`` from pre-built
|
||||
binaries, you have to mark this bootstrapping method as untrusted. This makes
|
||||
Spack fall back to bootstrapping from sources:
|
||||
|
||||
.. code-block:: console
|
||||
|
||||
$ spack bootstrap untrust github-actions-v0.2
|
||||
==> "github-actions-v0.2" is now untrusted and will not be used for bootstrapping
|
||||
|
||||
You can verify that the new settings are effective with:
|
||||
|
||||
.. command-output:: spack bootstrap list
|
||||
.. code-block:: console
|
||||
|
||||
$ spack bootstrap list
|
||||
Name: github-actions-v0.2 UNTRUSTED
|
||||
|
||||
Type: buildcache
|
||||
|
||||
Info:
|
||||
url: https://mirror.spack.io/bootstrap/github-actions/v0.2
|
||||
homepage: https://github.com/spack/spack-bootstrap-mirrors
|
||||
releases: https://github.com/spack/spack-bootstrap-mirrors/releases
|
||||
|
||||
Description:
|
||||
Buildcache generated from a public workflow using Github Actions.
|
||||
The sha256 checksum of binaries is checked before installation.
|
||||
|
||||
[ ... ]
|
||||
|
||||
Name: spack-install TRUSTED
|
||||
|
||||
Type: install
|
||||
|
||||
Description:
|
||||
Specs built from sources by Spack. May take a long time.
|
||||
|
||||
.. note::
|
||||
|
||||
@@ -186,7 +235,9 @@ under the ``${HOME}/.spack`` directory. The software installed there can be quer
|
||||
|
||||
.. code-block:: console
|
||||
|
||||
$ spack -b find
|
||||
$ spack find --bootstrap
|
||||
==> Showing internal bootstrap store at "/home/spack/.spack/bootstrap/store"
|
||||
==> 3 installed packages
|
||||
-- linux-ubuntu18.04-x86_64 / gcc@10.1.0 ------------------------
|
||||
clingo-bootstrap@spack python@3.6.9 re2c@1.2.1
|
||||
|
||||
@@ -195,7 +246,7 @@ In case it's needed the bootstrap store can also be cleaned with:
|
||||
.. code-block:: console
|
||||
|
||||
$ spack clean -b
|
||||
==> Removing bootstrapped software and configuration in "/home/spack/.spack/bootstrap"
|
||||
==> Removing software in "/home/spack/.spack/bootstrap/store"
|
||||
|
||||
^^^^^^^^^^^^^^^^^^
|
||||
Check Installation
|
||||
@@ -250,10 +301,9 @@ Compiler configuration
|
||||
|
||||
Spack has the ability to build packages with multiple compilers and
|
||||
compiler versions. Compilers can be made available to Spack by
|
||||
specifying them manually in ``compilers.yaml`` or ``packages.yaml``,
|
||||
or automatically by running ``spack compiler find``, but for
|
||||
convenience Spack will automatically detect compilers the first time
|
||||
it needs them.
|
||||
specifying them manually in ``compilers.yaml``, or automatically by
|
||||
running ``spack compiler find``, but for convenience Spack will
|
||||
automatically detect compilers the first time it needs them.
|
||||
|
||||
.. _cmd-spack-compilers:
|
||||
|
||||
@@ -318,7 +368,7 @@ installed, but you know that new compilers have been added to your
|
||||
|
||||
.. code-block:: console
|
||||
|
||||
$ module load gcc/4.9.0
|
||||
$ module load gcc-4.9.0
|
||||
$ spack compiler find
|
||||
==> Added 1 new compiler to ~/.spack/linux/compilers.yaml
|
||||
gcc@4.9.0
|
||||
@@ -366,8 +416,7 @@ Manual compiler configuration
|
||||
|
||||
If auto-detection fails, you can manually configure a compiler by
|
||||
editing your ``~/.spack/<platform>/compilers.yaml`` file. You can do this by running
|
||||
``spack config edit compilers``, which will open the file in
|
||||
:ref:`your favorite editor <controlling-the-editor>`.
|
||||
``spack config edit compilers``, which will open the file in your ``$EDITOR``.
|
||||
|
||||
Each compiler configuration in the file looks like this:
|
||||
|
||||
@@ -458,54 +507,6 @@ specification. The operations available to modify the environment are ``set``, `
|
||||
prepend_path: # Similar for append|remove_path
|
||||
LD_LIBRARY_PATH: /ld/paths/added/by/setvars/sh
|
||||
|
||||
.. note::
|
||||
|
||||
Spack is in the process of moving compilers from a separate
|
||||
attribute to be handled like all other packages. As part of this
|
||||
process, the ``compilers.yaml`` section will eventually be replaced
|
||||
by configuration in the ``packages.yaml`` section. This new
|
||||
configuration is now available, although it is not yet the default
|
||||
behavior.
|
||||
|
||||
Compilers can also be configured as external packages in the
|
||||
``packages.yaml`` config file. Any external package for a compiler
|
||||
(e.g. ``gcc`` or ``llvm``) will be treated as a configured compiler
|
||||
assuming the paths to the compiler executables are determinable from
|
||||
the prefix.
|
||||
|
||||
If the paths to the compiler executable are not determinable from the
|
||||
prefix, you can add them to the ``extra_attributes`` field. Similarly,
|
||||
all other fields from the compilers config can be added to the
|
||||
``extra_attributes`` field for an external representing a compiler.
|
||||
|
||||
Note that the format for the ``paths`` field in the
|
||||
``extra_attributes`` section is different than in the ``compilers``
|
||||
config. For compilers configured as external packages, the section is
|
||||
named ``compilers`` and the dictionary maps language names (``c``,
|
||||
``cxx``, ``fortran``) to paths, rather than using the names ``cc``,
|
||||
``fc``, and ``f77``.
|
||||
|
||||
.. code-block:: yaml
|
||||
|
||||
packages:
|
||||
gcc:
|
||||
external:
|
||||
- spec: gcc@12.2.0 arch=linux-rhel8-skylake
|
||||
prefix: /usr
|
||||
extra_attributes:
|
||||
environment:
|
||||
set:
|
||||
GCC_ROOT: /usr
|
||||
external:
|
||||
- spec: llvm+clang@15.0.0 arch=linux-rhel8-skylake
|
||||
prefix: /usr
|
||||
extra_attributes:
|
||||
compilers:
|
||||
c: /usr/bin/clang-with-suffix
|
||||
cxx: /usr/bin/clang++-with-extra-info
|
||||
fortran: /usr/bin/gfortran
|
||||
extra_rpaths:
|
||||
- /usr/lib/llvm/
|
||||
|
||||
^^^^^^^^^^^^^^^^^^^^^^^
|
||||
Build Your Own Compiler
|
||||
@@ -672,7 +673,7 @@ Fortran.
|
||||
|
||||
compilers:
|
||||
- compiler:
|
||||
# ...
|
||||
...
|
||||
paths:
|
||||
cc: /usr/bin/clang
|
||||
cxx: /usr/bin/clang++
|
||||
@@ -1553,7 +1554,7 @@ Spack On Windows
|
||||
|
||||
Windows support for Spack is currently under development. While this work is still in an early stage,
|
||||
it is currently possible to set up Spack and perform a few operations on Windows. This section will guide
|
||||
you through the steps needed to install Spack and start running it on a fresh Windows machine.
|
||||
you through the steps needed to install Spack and start running it on a fresh Windows machine.
|
||||
|
||||
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
|
||||
Step 1: Install prerequisites
|
||||
@@ -1563,7 +1564,7 @@ To use Spack on Windows, you will need the following packages:
|
||||
|
||||
Required:
|
||||
* Microsoft Visual Studio
|
||||
* Python
|
||||
* Python
|
||||
* Git
|
||||
|
||||
Optional:
|
||||
@@ -1578,8 +1579,6 @@ Microsoft Visual Studio
|
||||
"""""""""""""""""""""""
|
||||
|
||||
Microsoft Visual Studio provides the only Windows C/C++ compiler that is currently supported by Spack.
|
||||
Spack additionally requires that the Windows SDK (including WGL) to be installed as part of your
|
||||
visual studio installation as it is required to build many packages from source.
|
||||
|
||||
We require several specific components to be included in the Visual Studio installation.
|
||||
One is the C/C++ toolset, which can be selected as "Desktop development with C++" or "C++ build tools,"
|
||||
@@ -1587,7 +1586,6 @@ depending on installation type (Professional, Build Tools, etc.) The other requ
|
||||
"C++ CMake tools for Windows," which can be selected from among the optional packages.
|
||||
This provides CMake and Ninja for use during Spack configuration.
|
||||
|
||||
|
||||
If you already have Visual Studio installed, you can make sure these components are installed by
|
||||
rerunning the installer. Next to your installation, select "Modify" and look at the
|
||||
"Installation details" pane on the right.
|
||||
@@ -1597,8 +1595,8 @@ Intel Fortran
|
||||
"""""""""""""
|
||||
|
||||
For Fortran-based packages on Windows, we strongly recommend Intel's oneAPI Fortran compilers.
|
||||
The suite is free to download from Intel's website, located at
|
||||
https://software.intel.com/content/www/us/en/develop/tools/oneapi/components/fortran-compiler.html.
|
||||
The suite is free to download from Intel's website, located at
|
||||
https://software.intel.com/content/www/us/en/develop/tools/oneapi/components/fortran-compiler.html#gs.70t5tw.
|
||||
The executable of choice for Spack will be Intel's Beta Compiler, ifx, which supports the classic
|
||||
compiler's (ifort's) frontend and runtime libraries by using LLVM.
|
||||
|
||||
@@ -1647,8 +1645,8 @@ in a Windows CMD prompt.
|
||||
|
||||
.. note::
|
||||
If you chose to install Spack into a directory on Windows that is set up to require Administrative
|
||||
Privileges, Spack will require elevated privileges to run.
|
||||
Administrative Privileges can be denoted either by default such as
|
||||
Privleges, Spack will require elevated privleges to run.
|
||||
Administrative Privleges can be denoted either by default such as
|
||||
``C:\Program Files``, or aministrator applied administrative restrictions
|
||||
on a directory that spack installs files to such as ``C:\Users``
|
||||
|
||||
@@ -1744,21 +1742,33 @@ Spack console via:
|
||||
|
||||
spack install cpuinfo
|
||||
|
||||
If in the previous step, you did not have CMake or Ninja installed, running the command above should bootstrap both packages
|
||||
If in the previous step, you did not have CMake or Ninja installed, running the command above should boostrap both packages
|
||||
|
||||
"""""""""""""""""""""""""""
|
||||
Windows Compatible Packages
|
||||
"""""""""""""""""""""""""""
|
||||
|
||||
Not all spack packages currently have Windows support. Some are inherently incompatible with the
|
||||
platform, and others simply have yet to be ported. To view the current set of packages with Windows
|
||||
support, the list command should be used via `spack list -t windows`. If there's a package you'd like
|
||||
to install on Windows but is not in that list, feel free to reach out to request the port or contribute
|
||||
the port yourself.
|
||||
Many Spack packages are not currently compatible with Windows, due to Unix
|
||||
dependencies or incompatible build tools like autoconf. Here are several
|
||||
packages known to work on Windows:
|
||||
|
||||
* abseil-cpp
|
||||
* clingo
|
||||
* cpuinfo
|
||||
* cmake
|
||||
* glm
|
||||
* nasm
|
||||
* netlib-lapack (requires Intel Fortran)
|
||||
* ninja
|
||||
* openssl
|
||||
* perl
|
||||
* python
|
||||
* ruby
|
||||
* wrf
|
||||
* zlib
|
||||
|
||||
.. note::
|
||||
This is by no means a comprehensive list, some packages may have ports that were not tagged
|
||||
while others may just work out of the box on Windows and have not been tagged as such.
|
||||
This is by no means a comprehensive list
|
||||
|
||||
^^^^^^^^^^^^^^
|
||||
For developers
|
||||
@@ -1770,4 +1780,3 @@ Instructions for creating the installer are at
|
||||
https://github.com/spack/spack/blob/develop/lib/spack/spack/cmd/installer/README.md
|
||||
|
||||
Alternatively a pre-built copy of the Windows installer is available as an artifact of Spack's Windows CI
|
||||
available at each run of the CI on develop or any PR.
|
||||
|
@@ -1,138 +0,0 @@
|
||||
.. Copyright 2013-2024 Lawrence Livermore National Security, LLC and other
|
||||
Spack Project Developers. See the top-level COPYRIGHT file for details.
|
||||
|
||||
SPDX-License-Identifier: (Apache-2.0 OR MIT)
|
||||
|
||||
==========================
|
||||
Using External GPU Support
|
||||
==========================
|
||||
|
||||
Many packages come with a ``+cuda`` or ``+rocm`` variant. With no added
|
||||
configuration Spack will download and install the needed components.
|
||||
It may be preferable to use existing system support: the following sections
|
||||
help with using a system installation of GPU libraries.
|
||||
|
||||
-----------------------------------
|
||||
Using an External ROCm Installation
|
||||
-----------------------------------
|
||||
|
||||
Spack breaks down ROCm into many separate component packages. The following
|
||||
is an example ``packages.yaml`` that organizes a consistent set of ROCm
|
||||
components for use by dependent packages:
|
||||
|
||||
.. code-block:: yaml
|
||||
|
||||
packages:
|
||||
all:
|
||||
compiler: [rocmcc@=5.3.0]
|
||||
variants: amdgpu_target=gfx90a
|
||||
hip:
|
||||
buildable: false
|
||||
externals:
|
||||
- spec: hip@5.3.0
|
||||
prefix: /opt/rocm-5.3.0/hip
|
||||
hsa-rocr-dev:
|
||||
buildable: false
|
||||
externals:
|
||||
- spec: hsa-rocr-dev@5.3.0
|
||||
prefix: /opt/rocm-5.3.0/
|
||||
llvm-amdgpu:
|
||||
buildable: false
|
||||
externals:
|
||||
- spec: llvm-amdgpu@5.3.0
|
||||
prefix: /opt/rocm-5.3.0/llvm/
|
||||
comgr:
|
||||
buildable: false
|
||||
externals:
|
||||
- spec: comgr@5.3.0
|
||||
prefix: /opt/rocm-5.3.0/
|
||||
hipsparse:
|
||||
buildable: false
|
||||
externals:
|
||||
- spec: hipsparse@5.3.0
|
||||
prefix: /opt/rocm-5.3.0/
|
||||
hipblas:
|
||||
buildable: false
|
||||
externals:
|
||||
- spec: hipblas@5.3.0
|
||||
prefix: /opt/rocm-5.3.0/
|
||||
rocblas:
|
||||
buildable: false
|
||||
externals:
|
||||
- spec: rocblas@5.3.0
|
||||
prefix: /opt/rocm-5.3.0/
|
||||
rocprim:
|
||||
buildable: false
|
||||
externals:
|
||||
- spec: rocprim@5.3.0
|
||||
prefix: /opt/rocm-5.3.0/rocprim/
|
||||
|
||||
This is in combination with the following compiler definition:
|
||||
|
||||
.. code-block:: yaml
|
||||
|
||||
compilers:
|
||||
- compiler:
|
||||
spec: rocmcc@=5.3.0
|
||||
paths:
|
||||
cc: /opt/rocm-5.3.0/bin/amdclang
|
||||
cxx: /opt/rocm-5.3.0/bin/amdclang++
|
||||
f77: null
|
||||
fc: /opt/rocm-5.3.0/bin/amdflang
|
||||
operating_system: rhel8
|
||||
target: x86_64
|
||||
|
||||
This includes the following considerations:
|
||||
|
||||
- Each of the listed externals specifies ``buildable: false`` to force Spack
|
||||
to use only the externals we defined.
|
||||
- ``spack external find`` can automatically locate some of the ``hip``/``rocm``
|
||||
packages, but not all of them, and furthermore not in a manner that
|
||||
guarantees a complementary set if multiple ROCm installations are available.
|
||||
- The ``prefix`` is the same for several components, but note that others
|
||||
require listing one of the subdirectories as a prefix.
|
||||
|
||||
-----------------------------------
|
||||
Using an External CUDA Installation
|
||||
-----------------------------------
|
||||
|
||||
CUDA is split into fewer components and is simpler to specify:
|
||||
|
||||
.. code-block:: yaml
|
||||
|
||||
packages:
|
||||
all:
|
||||
variants:
|
||||
- cuda_arch=70
|
||||
cuda:
|
||||
buildable: false
|
||||
externals:
|
||||
- spec: cuda@11.0.2
|
||||
prefix: /opt/cuda/cuda-11.0.2/
|
||||
|
||||
where ``/opt/cuda/cuda-11.0.2/lib/`` contains ``libcudart.so``.
|
||||
|
||||
|
||||
|
||||
-----------------------------------
|
||||
Using an External OpenGL API
|
||||
-----------------------------------
|
||||
Depending on whether we have a graphics card or not, we may choose to use OSMesa or GLX to implement the OpenGL API.
|
||||
|
||||
If a graphics card is unavailable, OSMesa is recommended and can typically be built with Spack.
|
||||
However, if we prefer to utilize the system GLX tailored to our graphics card, we need to declare it as an external. Here's how to do it:
|
||||
|
||||
|
||||
.. code-block:: yaml
|
||||
|
||||
packages:
|
||||
libglx:
|
||||
require: [opengl]
|
||||
opengl:
|
||||
buildable: false
|
||||
externals:
|
||||
- prefix: /usr/
|
||||
spec: opengl@4.6
|
||||
|
||||
Note that prefix has to be the root of both the libraries and the headers, using is /usr not the path the the lib.
|
||||
To know which spec for opengl is available use ``cd /usr/include/GL && grep -Ri gl_version``.
|
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Reference in New Issue
Block a user