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Author SHA1 Message Date
Todd Gamblin
e3fc937b32 WIP 2023-12-14 14:27:59 -08:00
Todd Gamblin
977f6ce65c solver: refactor transforms in condition generation
- [x] allow caller of `condition()` to pass lists of transforms
- [x] all transform functions now take trigger *and* effect as parameters
- [x] add some utility functions to simplify `condition()`
2023-12-14 13:50:41 -08:00
Todd Gamblin
a690b8c27c Improve parsing of quoted flags and variants in specs (#41529)
This PR does several things:

- [x] Allow any character to appear in the quoted values of variants and flags.
- [x] Allow easier passing of quoted flags on the command line, e.g. `cflags="-O2 -g"`.
- [x] Handle quoting better in spec output, using single quotes around double 
      quotes and vice versa.
- [x] Disallow spaces around `=` and `==` when parsing variants and flags.

## Motivation

This PR is motivated by the issues above and by ORNL's 
[tips for launching at scale on Frontier](https://docs.olcf.ornl.gov/systems/frontier_user_guide.html#tips-for-launching-at-scale).
ORNL recommends using `sbcast --send-libs` to broadcast executables and their
libraries to compute nodes when running large jobs (e.g., 80k ranks). For an
executable named `exe`, `sbcast --send-libs` stores the needed libraries in a
directory alongside the executable called `exe_libs`. ORNL recommends pointing
`LD_LIBRARY_PATH` at that directory so that `exe` will find the local libraries and
not overwhelm the filesystem.

There are other ways to mitigate this problem:
* You could build with `RUNPATH` using `spack config add config:shared_linking:type:runpath`,
  which would make `LD_LIBRARY_PATH` take precedence over Spack's `RUNPATHs`.
  I don't recommend this one because `RUNPATH` can cause many other things to go wrong.
* You could use `spack config add config:shared_linking:bind:true`, added in #31948, which
  will greatly reduce the filesystem load for large jobs by pointing `DT_NEEDED` entries in
  ELF *directly* at the needed `.so` files instead of relying on `RPATH` search via soname.
  I have not experimented with this at 80,000 ranks, but it should help quite a bit.
* You could use [Spindle](https://github.com/hpc/Spindle) (as LLNL does on its machines)
  which should transparently fix this without any changes to your executable and without
  any need to use `sbcast` or other tools.

But we want to support the `sbcast` use case as well.

## `sbcast` and Spack

Spack's `RPATHs` break the `sbcast` fix because they're considered with higher precedence
than `LD_LIBRARY_PATH`. So Spack applications will still end up hitting the shared filesystem
when searching for libraries. We can avoid this by injecting some `ldflags` in to the build, e.g.,
if were were going to launch, say, `LAMMPS` at scale, we could add another `RPATH`
specifically for use with `sbcast`:

    spack install lammps ldflags='-Wl,-rpath=$ORIGIN/lmp_libs'

This will put the `lmp_libs` directory alongside `LAMMPS`'s `lmp` executable first in the
`RPATH`, so it will be searched before any directories on the shared filesystem.

## Issues with quoting

Before this PR, the command above would've errored out for two reasons:

1. `$` wasn't an allowed character in our spec parser.
2. You would've had to double quote the flags to get them to pass through correctly:

       spack install lammps ldflags='"-Wl,-rpath=$ORIGIN/lmp_libs"'

This is ugly and I don't think many users will easily figure it out. The behavior was added in
#29282, and it improved parsing of specs passed as a single string, e.g.:

    spack install 'lammps ldflags="-Wl,-rpath=$ORIGIN/lmp_libs"'

but a lot of users are naturally going to try to quote arguments *directly* on the command
line, without quoting their entire spec. #29282 used a heuristic to detect unquoted flags
and warn the user, but the warning could be confusing. In particular, if you wrote
`cflags="-O2 -g"` on the command line, it would break the flags up, warn, and tell you
that you could fix the issue by writing `cflags="-O2 -g"` even though you just wrote
that. It's telling you to *quote* that value, but the user has to know to double quote.

## New heuristic for quoted arguments from the CLI

There are only two places where we allow arbitrary quoted strings in specs: flags and
variant values, so this PR adds a simpler heuristic to the CLI parser: if an argument in
`sys.argv` starts with `name=...`, then we assume the whole argument is quoted.

This means you can write:

    spack install bzip2 cflags="-O2 -g"

directly on the command line, without multiple levels of quoting. This also works:

    spack install 'bzip2 cflags="-O2 -g"'

The only place where this heuristic runs into ambiguity is if you attempt to pass
anonymous specs that start with `name=...` as one large string. e.g., this will be
interpreted as one large flag value:

    spack find 'cflags="-O2 -g" ~bar +baz'

This sets `cflags` to `"-O2 -g" ~bar +baz`, which is likely not what you wanted. You
can fix this easily by either removing the quotes:

    spack find cflags="-O2 -g" ~bar +baz

Or by adding a space at the start, which has the same effect:

    spack find ' cflags="-O2 -g" ~bar +baz'

You may wonder why we don't just look for quotes inside of flag arguments, and the
reason is that you *might* want them there.  If you are passing arguments like:

    spack install zlib cppflags="-D DEBUG_MSG1='quick fox' -D DEBUG_MSG2='lazy dog'"

You *need* the quotes there. So we've opted for one potentially confusing, but easily
fixed outcome vs. limiting what you can put in your quoted strings.

## Quotes in formatted spec output

In addition to being more lenient about characters accepted in quoted strings, this PR fixes
up spec formatting a bit. We now format quoted strings in specs with single quotes, unless
the string has a single quote in it, in which case we JSON-escape the string (i.e., we add
`\` before `"` and `\`).  

    zlib cflags='-D FOO="bar"'
    zlib cflags="-D FOO='bar'"
    zlib cflags="-D FOO='bar' BAR=\"baz\""
2023-12-13 16:36:22 -08:00
yizeyi18
a1fa862c3f camp: fixing build issue (#41400)
* adding necessary headers, to fix https://github.com/spack/spack/issues/41398

* deleting something imported by accident

* [@spackbot] updating style on behalf of yizeyi18

* undo commit 7688fed according to suggestion from @msimberg

* patching camp@:2022.10.1 for compatibility with gcc-13

* adding the patch

* fixing paths in the patch

* [@spackbot] updating style on behalf of yizeyi18

* Update camp patch using LLNL/camp@05e1c35

Co-authored-by: Mikael Simberg <mikael.simberg@iki.fi>

* changing patch name

---------

Co-authored-by: Mikael Simberg <mikael.simberg@iki.fi>
2023-12-13 16:28:57 -08:00
Harmen Stoppels
80f31829a8 python: don't run mkdirp in setup_dependent_package (#41603)
`setup_dependent_package` is not a build phase, it should just set
globals for a package.

It's called during setup of runtime environment of packages, and there
have been reports of it actually failing due to a read only file system
(not sure under what exact conditions that is possible).
2023-12-13 23:54:28 +01:00
Arne Becker
84436f10ba perl-config-tiny: New package (#41584) 2023-12-13 14:43:03 -07:00
Arne Becker
660485709d perl-b-cow: New package (#41596) 2023-12-13 12:06:14 -08:00
Arne Becker
251dce05c9 perl-throwable: New package (#41597) 2023-12-13 12:05:17 -08:00
Arne Becker
ecd05fdfb4 perl-scope-guard: New package (#41598) 2023-12-13 12:02:50 -08:00
Arne Becker
9ffcf36444 perl-test-sharedfork: New package (#41599) 2023-12-13 12:01:54 -08:00
Arne Becker
07258a7c80 perl-safe-isa: New package (#41600) 2023-12-13 12:01:10 -08:00
Arne Becker
395e53a5e0 perl-proc-processtable: New package (#41601) 2023-12-13 11:59:05 -08:00
Arne Becker
77c331c753 perl-net-ip: New package (#41606) 2023-12-13 11:57:17 -08:00
Arne Becker
ee5481a861 perl-any-uri-escape: New package (#41607) 2023-12-13 11:56:11 -08:00
Arne Becker
f7ec061c64 perl-term-table: New package (#41608) 2023-12-13 11:47:08 -08:00
Arne Becker
7cb70ff4b1 perl-test-pod: New package (#41609) 2023-12-13 11:45:59 -08:00
Arne Becker
4a661f3255 perl-spiffy: New package (#41610) 2023-12-13 11:44:36 -08:00
Arne Becker
7037240879 perl-ipc-system-simple: New package (#41611) 2023-12-13 11:43:21 -08:00
Arne Becker
0e96dfaeef perl-mime-types: New package (#41612) 2023-12-13 11:41:48 -08:00
Arne Becker
a0a2cd6a1a perl-convert-nls-date-format: New package (#41613) 2023-12-13 11:39:11 -08:00
Arne Becker
170c05bebb perl-module-pluggable: New package (#41614) 2023-12-13 11:04:27 -08:00
Arne Becker
bdf68b7ac0 perl-email-date-format: New package (#41617) 2023-12-13 11:03:24 -08:00
Arne Becker
c176de94e2 perl-heap: New package (#41618) 2023-12-13 11:00:55 -08:00
Harmen Stoppels
f63dbbe75d spack mirror create --all: include patches (#41579) 2023-12-13 20:00:44 +01:00
Arne Becker
a0c7b10c76 perl-log-any: New package (#41619) 2023-12-13 10:59:54 -08:00
Arne Becker
2dc3bf0164 perl-http-cookiejar: New package (#41620) 2023-12-13 10:57:55 -08:00
Harmen Stoppels
9bf6e05d02 Revert "[protobuf] New versions, explicit cxxstd variant (#41459)" (#41635)
This reverts commit b82bd8e6b6.
2023-12-13 15:02:25 +01:00
Massimiliano Culpo
cd283846af mysql: add v8.0.35, fix build (#41602) 2023-12-13 12:10:33 +01:00
Taillefumier Mathieu
03625c1c95 Add pic variant when building the library (#41631)
* Add pic variant when building the library

* make pretty

* Probably better approach
2023-12-13 01:38:13 -07:00
Wouter Deconinck
f01774f1d4 hepmc3: fix from_variant -> self.define (#41605)
* hepmc3: fix from_variant -> self.define
* hepmc3: str on versions
2023-12-13 07:02:48 +01:00
Christopher Christofi
965860d1f8 perl-getopt-argvfile: add new package with version 1.11 (#41625) 2023-12-12 20:33:25 -07:00
Christopher Christofi
c4baf4e199 perl-parselex: add new package with version 2.21 (#41626) 2023-12-12 20:08:28 -07:00
Aiden Grossman
dd82227ae7 Remove MCT license annotation (#41593)
This license annotation is currently invalid as it specifies a URL
rather than an SPDX expression. Remove it for now until we have a
consensus on how to represent this case.
2023-12-12 17:52:42 -07:00
fpruvost
a9028630a5 pastix: new release v6.3.2 (#41585) 2023-12-12 15:57:11 -07:00
Arne Becker
789c85ed8b perl-clone-pp: New package (#41586) 2023-12-12 15:46:25 -07:00
James Taliaferro
cf9d36fd64 kakoune: add v2023.08.05 (#41443) 2023-12-12 23:02:20 +01:00
Arne Becker
ef7ce46649 perl-ipc-run3: New package (#41583) 2023-12-12 14:29:30 -07:00
pabloaledo
334a50662f Update bioconductor packages (#41227)
Signed-off-by: Pablo <pablo.aledo@seqera.io>
2023-12-12 22:04:45 +01:00
Dom Heinzeller
d68e73d006 New package Model Coupling Toolkit (MCT) (#41564)
* New package Model Coupling Toolkit (MCT)
* Remove ~mpi variant from mct, build is not working correctly
* Remove boilerplate stuff from var/spack/repos/builtin/packages/mct/package.py
2023-12-12 11:26:57 -08:00
Adam J. Stewart
7d7f097295 py-pyvista: add v0.42.3 (#41246) 2023-12-12 10:58:15 -08:00
Massimiliano Culpo
37cdcc7172 mysql: fix issue when using old core API call (#41573)
MySQL was performing a core API call to `Spec.flat_dependencies`
when setting up the build environment. This function is an
implementation detail of the old concretizer, where multiple nodes
from the same package are not allowed.

This PR uses a more idiomatic way to check if "python" is
in the DAG.

For reference, see #11356 to check why the call was introduced.
2023-12-12 10:40:31 -08:00
Thomas Madlener
0a40bb72e8 genfit: Add latest tags and update root dependency (#41572) 2023-12-12 10:30:06 -08:00
James Beal
24b6edac89 bowtie2 add latest version (#41580)
Co-authored-by: James Beal <jb23@sanger.ac.uk>
2023-12-12 10:23:17 -08:00
Arne Becker
3e7acf3e61 perl-type-tiny: New package (#41582) 2023-12-12 10:21:56 -08:00
Harmen Stoppels
ede36512e7 gcc: simplify patch when range (#41587) 2023-12-12 10:03:41 -07:00
jmuddnv
e06b169720 NVIDIA HPC SDK: add v23.11 (#41125) 2023-12-12 17:40:53 +01:00
Stephen Sachs
7ed968d42c clingo-bootstrap: use new Spack API for environment modifications (#41574) 2023-12-12 17:28:15 +01:00
Cameron Rutherford
c673b9245c exago: Add v1.2.0 and patches for builds without python or tests. (#41350)
Co-authored-by: Satish Balay <balay@mcs.anl.gov>
2023-12-12 10:17:26 -06:00
Mikael Simberg
27c0dab5ca fmt: Add patch to allow compilation with clang in CUDA mode (#41578) 2023-12-12 08:33:44 -07:00
Chris Green
b82bd8e6b6 [protobuf] New versions, explicit cxxstd variant (#41459)
* [protobuf] New versions, explicit cxxstd variant
* New versions 3.15.8, 3.25.0, 3.25.1.
* New explicit variant `cxxstd` with support for older Protobuf
  versions.
* Support testing.
* Use Protobuf's `protobuf_BUILD_SHARED_LIBS` instead of
  `BUILD_SHARED_LIBS`.
* Support building with LLVM/Clang's `libc++`.
* Address audit issue
* Variant default does not honor `when` clause
* Use `self.spec.satisfies()` instead of `with when()`
* Fix silliness; improve consistency
* Today was apparently a go-back-to-bed day
2023-12-11 22:08:40 -07:00
Sreenivasa Murthy Kolam
5351382501 Bump up the version for ROCm-5.7.0 and ROCm-5.7.1 releases. (#40724)
* initial commit for rocm-5.7.0 and 5.7.1 releases
* bump up ther version for 5.7.0 and 5.7.1 releases
* update recipes to support 5.7.0 and 5.7.1 releases
* bump up the version for ROCm 5.7.0 and ROCm-5.7.1 releases
* bump up the version for composable-kernel amd miopen-hip
* fix style errors
* fix style errors in hip etc
* renaming composable-kernel recipe
* changes for composable_kernel
* Revert "renaming composable-kernel recipe"
  This reverts commit 0cf6c6debf.
* Revert "changes for composable_kernel"
  This reverts commit 05272a10a7.
* bump up the version for hiprand
* using the checksum for hiprand-5.7.1
* bump up the version for 5.7.0 and 5.7.1 releases
* fix style errors
* fix merge conflicts with the develop.
* temp workaround for the error seen with rocm-5.7.0 when trying
  to generate the dependency file for runtime/legion/legion_redop.cu
* fix build issue(work around) with legion
* add patch for migraphx package to turn off ck
* update to  hip recipe
* fix hip-path detection inside llvm clang driver
* update llvm-amdgpu and rocm-validation-suite recipes
* fix style errors
* bump up the version for amdsmi for rocm-5.7.0 release
* add support for gfx941,gfx942 for rocm-5.7.0 release onwards
* revert changes to rocm.py file
* added gfx941 and gfx942 to rocm.py and add the gfx942 to kokkos and new checksum
  the new version seem to support gfx942
* bump up the version for rccl for 5.7.1
* update the patch for rocm-openmp-extras for 5.7.0
* update mivisionx recipe for 5.7.0 release
* add new dependencies for rocfft tests
* port the fix for avx build, the start address of values_ buffer in KernelParameters is not
  correct as it is computed based on 16-byte alignment
* set HIP_PATH=ROCM_PATH for 5.7.0 onwards
* address review comments
* revert adding xnack- and xnack+ to gfx940,gfx941,gfx942 as the prechecks were failing
2023-12-11 14:49:19 -08:00
Harmen Stoppels
8c29e90fa9 Build cache: make signed/unsigned a mirror property (#41507)
* Add `signed` property to mirror config

* make unsigned a tri-state: true/false overrides mirror config, none takes mirror config

* test commands

* Document this

* add a test
2023-12-11 15:14:59 -06:00
Tamara Dahlgren
045f398f3d Add missing build-system/custom phases to the CDash map (#41439) 2023-12-11 11:06:19 -08:00
Chris Green
6986e70877 [abseil-cpp] New version 20230802.1 (#41457) 2023-12-11 11:04:46 -08:00
wspear
4d59e746fd otf2: add v3.0.3 (#41499)
* Add otf2 version 3.3
* Update var/spack/repos/builtin/packages/otf2/package.py

---------

Co-authored-by: Tamara Dahlgren <35777542+tldahlgren@users.noreply.github.com>
2023-12-11 11:02:58 -08:00
Arne Becker
f6de34f9db New package: perl-test-file (#41510) 2023-12-11 10:52:24 -08:00
Arne Becker
0f0adb71d0 perl-class-tiny: New package (#41513) 2023-12-11 10:49:38 -08:00
Joe Schoonover
4ec958c5c6 Add new version of feq-parse (#41515)
The new feq-parse version includes fixes for ifort and ifx compilers
Additionally, evaluation of parser objects with multidimension arrays is
now supported.
2023-12-11 10:47:42 -08:00
Kyle Gerheiser
2aa07fa557 libfabric: Add ucx provider variant (#41524) 2023-12-11 10:46:18 -08:00
Arne Becker
239d343588 perl-test-nowarnings: New package (#41539)
* perl-test-nowarnings: New package
* Add myself as maintainer
2023-12-11 10:37:52 -08:00
Andrey Perestoronin
44604708ad intel-oneapi-compilers 2024.0.1: added new version to packages (#41555)
* add new packages

* fix version
2023-12-11 11:33:42 -07:00
Arne Becker
f0109e4afe perl-test-weaken: New package (#41540) 2023-12-11 10:33:04 -08:00
Arne Becker
b8f90e1bdc perl-test-without-module: New package (#41541) 2023-12-11 10:31:44 -08:00
James Beal
8b9064e5e4 samtools/htslib add latest version (#41545)
* samtools/htslib add latest version
* Given I work at the same institute as the authors I think it fair I am willing to review changes, if it's complex I can ask them over tea.

---------

Co-authored-by: James Beal <jb23@sanger.ac.uk>
2023-12-11 10:29:08 -08:00
James Beal
ce79785c10 igv add latest version (#41546)
Co-authored-by: James Beal <jb23@sanger.ac.uk>
2023-12-11 10:26:29 -08:00
Christopher Christofi
af378c7f31 perl-bio-db-hts: add new package with version 3.01 (#41554)
* perl-bio-db-hts: add new package with version 3.01
* fix styling
2023-12-11 11:25:20 -07:00
Dom Heinzeller
cf50bfb7c2 Add eckit@1.24.5, ecmwf-atlas@{0.35.0,0.35.1,0.36.0} (#41547)
* Add eckit@1.24.5
* Add ecmwf-atlas@0.35.1
* Add ecmwf-atlas@0.36.0
2023-12-11 10:20:39 -08:00
Dom Heinzeller
620e090ff5 Add @climbfuji to fms maintainers (#41550) 2023-12-11 10:18:05 -08:00
Massimiliano Culpo
c4d86a9c2e apple-clang: add new package (#41485)
* apple-clang: added new package
* Add a maintainer
* Use f-strings, remove leftover comment
2023-12-11 10:06:27 -08:00
Kyle Gerheiser
3b74b894c7 fabtests: Add versions and update maintainer (#41525) 2023-12-11 18:55:02 +01:00
Dan Lipsa
3fa8afc036 Add v5.0.0 to SENSEI (#41551)
Co-authored-by: Dan Lipsa <dan.lipsa@savannah.khq.kitware.com>
2023-12-11 11:12:47 -06:00
Garth N. Wells
60628075cb Update for v0.7.2 (#41393) 2023-12-11 09:10:52 -08:00
Chris Green
9e4fab277b [root] New variants, patches (#41548)
* New variants:
  - `tmvz-cpu`
  - `tmvz-gpu`
  - `tmvz-pymva`
  - `tmvz-sofie`

* Improve X-related dependencies.

* Improve TMVA-related dependencies with more specificity.

* Patch possible missing standard header include in Eve7.

* Patch Protobuf handling to support new Protobuf-provided CMake config
  files required to handle transitive `abseil-cpp` dependence.

* Add missing terminal newline to `webgui` patch to remove patch
  warning.

* Handle deprecated/removed build options.
2023-12-11 09:18:10 -07:00
Christopher Christofi
5588e328f7 fpocket: improve recipe (#41532) 2023-12-11 15:45:52 +01:00
Rocco Meli
93a1fc90c9 add cmake constraint (#41542) 2023-12-11 15:36:29 +01:00
Patrick Gartung
7297721e78 Revert "[root] New variants, checksum changes, sundry improvements (#41463)" (#41544)
This reverts commit 7d45e132a6.
2023-12-11 15:34:24 +01:00
Felix Werner
eb57d96ea9 geant4/geant4-data: add v10.0.4 (#41478)
* geant4/geant4-data: add builtin_clhep variant and v10.0.4.

* geant4: revert addition of builtin_clhep variant.

* geant4: fix vecgeom variant only being available for v10.3 and above.
2023-12-11 14:21:25 +01:00
Rocco Meli
ce09642922 netlib-scalapack: add git attribute and master version (#41537) 2023-12-11 03:38:28 -07:00
Arne Becker
cd88eb1ed0 kyotocabinet: add new package (#41512) 2023-12-11 03:38:12 -07:00
Thomas Helfer
826df84baf tfel: fix v3.4.5 checksum (#41523) 2023-12-11 03:27:59 -07:00
Alex Richert
0a4b365a7d fms: add v2023.04 (#41475) 2023-12-11 11:15:01 +01:00
Harmen Stoppels
a2ed4704e7 Link to GitHub Action spack/setup-spack in docs (#41509) 2023-12-11 11:12:40 +01:00
Harmen Stoppels
28b49d5d2f unit tests: replace /bin/bash with /bin/sh (#41495) 2023-12-11 11:11:27 +01:00
Adam J. Stewart
16bb4c360a PyTorch: disable sleef dep for now (#41508) 2023-12-11 11:00:24 +01:00
Thomas Gruber
cfd58bdafe Likwid: likwid-icx-mem-group-fix.patch only for 5.2.* versions (#41514) 2023-12-11 10:48:02 +01:00
Matthieu Dorier
53493ceab1 leveldb: turning benchmark and tests off (#41518) 2023-12-11 10:41:03 +01:00
Dave Keeshan
64cd429cc8 Fix filter_compiler_wrapper where compiler is None (#41502)
Fix filer_compiler_wrapper for cases where the compiler returned in None, this happens on some installed gcc systems that do not have fortran built into them as standard, e.g. gcc@11.4.0 on ubuntu 22.04
2023-12-11 10:31:56 +01:00
Harmen Stoppels
525809632e petsc: improve hipsparse compat (#40311)
Co-authored-by: Satish Balay <balay@mcs.anl.gov>
2023-12-11 10:30:14 +01:00
Vanessasaurus
a6c32c80ab flux-core: add v0.57.0 (#41520)
Co-authored-by: github-actions <github-actions@users.noreply.github.com>
2023-12-11 10:25:02 +01:00
Todd Gamblin
57ad848f47 commands: better install status help formatting (#41527)
Before (hard to read, doesn't fit on small terminals):
:
```console
  -I, --install-status  show install status of packages

                        packages can be: installed [+], missing and needed by an installed package [-], installed in an upstream instance [^], or not installed (no annotation)
```

After (fits in 80 columns):

```console
  -I, --install-status  show install status of packages
                        [+] installed       [^] installed in an upstream
                         -  not installed   [-] missing dep of installed package
```
2023-12-11 10:17:37 +01:00
Brian Spilner
15623d8077 cdo: add v2.3.0 (#41479) 2023-12-11 09:45:16 +01:00
Thomas Madlener
c352db7645 vecgeom: Use correct checksum for version 1.2.5 (#41530)
See https://gitlab.cern.ch/VecGeom/VecGeom/-/releases/v1.2.5
2023-12-11 08:53:44 +01:00
Brian Van Essen
5d999d0e4f Add logic to cache the RPATH variables in CachedCMakePackages. (#41417) 2023-12-08 09:27:44 -08:00
Seth R. Johnson
694a1ff340 celeritas: new version 0.4.1 (#41504)
* celeritas: new version 0.4.1

* Mark correct versions as deprecated
2023-12-08 09:56:18 +00:00
Richard Berger
4ec451cfed flecsi: remove ^legion network=gasnet restriction (#41494) 2023-12-07 19:03:04 -07:00
Julien Cortial
a77eca7f88 cdt: Add versions 1.3.6 and 1.4.0 (#41490) 2023-12-07 14:27:39 -07:00
Greg Becker
14ac2b063a cce compiler: remove vestigial compiler names (#41303) 2023-12-07 15:17:03 -06:00
Tamara Dahlgren
edf4d6659d add missing endtime property to CDash (#41498) 2023-12-07 22:06:46 +01:00
Lydéric Debusschère
6531fbf425 py-mpldock: new package (#41316)
* py-mpldock: new package

* py-mpldock: remove version constraint on python

---------

Co-authored-by: LydDeb <lyderic.debusschere@eolen.com>
2023-12-07 21:24:05 +01:00
Victor Brunini
0a6045eadf Fix cdash reporter time stamps (#38825)
* Fix cdash reporter time stamps (#38818).
   The cdash reporter is created before packages are installed so save the
   starttime then instead of the endtime.
* Use endtime instead of starttime for the endtime of update

---------

Co-authored-by: Tamara Dahlgren <dahlgren1@llnl.gov>
2023-12-07 19:32:10 +00:00
Todd Gamblin
5722a13af0 Spack mailing list is now announcement-only (#41496)
Participation in the venerable Spack google group has dwindled, though we still have
540+ subscribers there.  I've made the mailing list announcement-only, and I've given
a few maintainers posting privileges.

This PR adds some notes to the README indicating that the mailing list is only for
announcements.
2023-12-07 19:22:14 +00:00
Brian Van Essen
9f1223e7a3 Bugfix spectrum-mpi module generation (#41466)
* Ensure that additional environment variables are set when a module
file is generated.

* Fixed the detection of the opal_prefix / MPI_ROOT field to use ompi_info.
---------

Co-authored-by: Greg Becker <becker33@llnl.gov>
2023-12-07 11:06:07 -08:00
Vijay M
5beef28444 Update homepage URL, add 5.5.1 version, remove bad version hashes, and other minro changes (#41492) 2023-12-07 10:52:06 -08:00
snehring
e618a93f3d iqtree2: add new version 2.2.2.7 and new variant lsd2 (#41467)
* iqtree2: add new version 2.2.2.7 and new variant lsd2
* iqtree2: reorder variant and resource
2023-12-07 11:30:14 -07:00
Garth N. Wells
3f0ec5c580 Update UFCx for v0.7.0. (#41392) 2023-12-07 10:20:34 -08:00
Kyle Knoepfel
14392efc6d Permit shared-library for libbacktrace (#41454) 2023-12-07 10:17:31 -08:00
John W. Parent
d7406aaaa5 CMake: v3.26.6 (#41282) 2023-12-07 10:25:42 -07:00
Harmen Stoppels
5a7e691ae2 freebsd (#41480) 2023-12-07 09:19:55 -08:00
Dave Keeshan
b9f63ab40b opensta: add new package (#41484)
* Add opensta, is allows 2 variants, zlib and cudd, but they are both enabled by default
* Remove unused import, os
2023-12-07 09:18:58 -08:00
Auriane R
4417b1f9ee Update pika package to use f-strings (#41483) 2023-12-07 10:14:33 -07:00
Adam J. Stewart
04f14166cb py-keras: add v3.0.1 (#41486) 2023-12-07 09:05:42 -08:00
Robert Cohn
223a54098e [intel-mkl,intel-ipp,intel-daal]: deprecate packages (#41488) 2023-12-07 09:01:02 -08:00
Satish Balay
ea505e2d26 petsc: add variant +zoltan (#41472) 2023-12-07 10:51:00 -06:00
Ataf Fazledin Ahamed
e2b51e01be traverse.py: use > 0 instead of >= 0 (#41482)
Signed-off-by: fazledyn-or <ataf@openrefactory.com>
2023-12-07 09:38:54 -07:00
jmlapre
a04ee77f77 trilinos: replace pytrilinos2 variant with python (#41435)
* depend_on python

There is an ill-named variant "python" that enables the pytrilinos1
variant.  This made it through our testing but broke on our actual
CI test machines.

* adjust "python" variant based on Trilinos version

For Trilinos <= 14, enable PyTrilinos(1). For later versions
of Trilinos, enable PyTrilinos2.

We still support directly enabling PyTrilinos2 via the "pytrilinos2"
variant.

* remove pytrilinos2 variant

* correct depends_on constraints
2023-12-07 10:28:13 -05:00
Jordan Galby
bb03ce7281 Do not use depfile in bootstrap (#41458)
- we don't have a fallback if make is not installed
- we assume file system locking works
- we don't verify that make is gnu make (bootstrapping fails on FreeBSD as a result)
- there are some weird race conditions in writing spack.yaml on concurrent spack install
- the view is updated after every package install instead of post environment install.
2023-12-07 10:09:49 +00:00
Massimiliano Culpo
31640652c7 audit: forbid nested dependencies in depends_on declarations (#41428)
Forbid nested dependencies in depends_on declarations, by running an audit in CI.

Fix the packages not passing the new audit:
- amd-aocl
- exago
- palace
- shapemapper
- xsdk-examples

ginkgo: add a commit sha to v1.5.0.glu_experimental
2023-12-07 10:21:01 +01:00
Samuel Browne
0ff0e8944e trilinos: add v15.0.0 (#41465) 2023-12-07 10:07:02 +01:00
Jack Morrison
a877d812d0 rdma-core: Add new versions 41.5, 42.5, 43.4, 44.4, 45.3, 46.2, 47.1, 49.0 (#41473) 2023-12-07 09:58:06 +01:00
dependabot[bot]
24a59ffd36 build(deps): bump actions/setup-python from 4.8.0 to 5.0.0 (#41474)
Bumps [actions/setup-python](https://github.com/actions/setup-python) from 4.8.0 to 5.0.0.
- [Release notes](https://github.com/actions/setup-python/releases)
- [Commits](b64ffcaf5b...0a5c615913)

---
updated-dependencies:
- dependency-name: actions/setup-python
  dependency-type: direct:production
  update-type: version-update:semver-major
...

Signed-off-by: dependabot[bot] <support@github.com>
Co-authored-by: dependabot[bot] <49699333+dependabot[bot]@users.noreply.github.com>
2023-12-07 09:55:55 +01:00
Dave Keeshan
57f46f0375 cudd: add new package (#41476) 2023-12-07 09:37:22 +01:00
Chris Green
7d45e132a6 [root] New variants, checksum changes, sundry improvements (#41463)
* New variants:
  - `tmvz-cpu`
  - `tmvz-gpu`
  - `tmvz-pymva`
  - `tmvz-sofie`

* Improve X-related dependencies.

* Improve TMVA-related dependencies with more specificity.

* Patch possible missing standard header include in Eve7.

* Patch Protobuf handling to support new Protobuf-provided CMake config
  files required to handle transitive `abseil-cpp` dependence.

* Add missing terminal newline to `webgui` patch to remove patch
  warning.

* Handle deprecated/removed build options.

* Handle unwanted system paths in various `PATH`-like environment
  variables.
2023-12-06 18:39:51 -06:00
Vicente Bolea
e7ac676417 paraview: dropping patch since changes exists (#41462) 2023-12-06 16:18:46 -07:00
Adam J. Stewart
94ba152ef5 py-torchmetrics: add v1.2.1 (#41456) 2023-12-06 12:48:28 -07:00
Massimiliano Culpo
5404a5bb82 llvm: reformulate a when condition to avoid tautology (#41461)
The condition on swig can be interpreted as "true if true,
false if false" and gives clingo the option to add swig
or not.

If not other optimization criteria break the tie, then
the concretization is non-deterministic.
2023-12-06 19:12:42 +01:00
Dave Keeshan
b522d8f610 yosys: add new package (#41416)
* Add EDA tools, yosys to Spack
* Add maintainers
* Move from format to f-strings
2023-12-06 09:47:58 -08:00
Thomas Madlener
2a57c11d28 lcio: add version 2.20.2, sio: add version 0.2 (#41451) 2023-12-06 09:46:18 -08:00
Thomas Madlener
1aa3a641ee edm4hep: Update cmake version dependency for newer versions (#41450) 2023-12-06 09:43:24 -08:00
yizeyi18
6feba1590c nwchem: add libxc/elpa support (#41376)
* added external libxc/elpa choice
* fixed formatting issues and 1 unused variant found by reviewer
* try to fix a string formatting issue
* try to fix some other string formatting issues
* fixed 1 flake8 style issue
* use explicit fftw-api@3
2023-12-06 09:38:46 -08:00
Chris Green
58a7912435 [catch2] Sundry improvements including C++20 support (#41199)
* Add `url_list` to facilitate finding new versions.

* `cxxstd` is not meaningful when `@:2.99.99` as it was a header-only
  package before v3.

* Support C++20/23, remove C++14 support.

* Add @greenc-FNAL to maintainers.

* Add CMake arguments to support testing, build of extras and examples.
2023-12-06 11:07:27 -06:00
yizeyi18
03ae2eb223 dla-future: add a patch (#41409)
* using std::int64_t needs include cstdint in gcc-13

Co-authored-by: Mikael Simberg <mikael.simberg@iki.fi>
2023-12-06 16:55:40 +01:00
Julien Cortial
013f0d3a13 Only build tests for proj package if required (#41065)
* Only build tests for proj package if required

Even if tests are not explictly required to be built, proj build them
anyway and tries to download Google Test.

* proj: fix name of test activation flag

* proj: Always set test activation flag

* proj: Patch test activation logic for versions 5.x
2023-12-06 09:32:39 -06:00
Eric Berquist
3e68aa0b2f py-pre-commit: add 3.5.0 (#41438) 2023-12-06 09:11:32 -06:00
Gavin John
1da0d0342b Add new versions of py-quast (#40788)
* Add new versions of py-quast

* Update hashes

* Add joblib and simplejson

* Fat finger

* Update dependency type
2023-12-06 09:04:17 -06:00
Lydéric Debusschère
6f7d91aebf py-python-pptx: new package (#41315)
* py-python-pptx: new package

* py-python-pptx: use pil instead of pillow, remove version constraint on python

---------

Co-authored-by: LydDeb <lyderic.debusschere@eolen.com>
2023-12-06 08:43:51 -06:00
Lydéric Debusschère
071c74d185 py-tldextract: new package (#41330)
* py-tldextract: new package

* py-tldextract: add version 5.1.1

* py-tldextract: fix version constraint on py-setuptools-scm

---------

Co-authored-by: LydDeb <lyderic.debusschere@eolen.com>
2023-12-06 08:42:48 -06:00
Juan Miguel Carceller
51435d6d69 ruff: add version 0.1.6 (#41355)
* Add a new version of ruff

* Add a comment about where the dependency can be found

---------

Co-authored-by: jmcarcell <jmcarcell@users.noreply.github.com>
2023-12-06 08:41:20 -06:00
Jordan Galby
8ce110e069 bootstrap: Don't catch Ctrl-C (#41449) 2023-12-06 14:58:14 +01:00
Auriane R
90aee11c33 Add pika 0.21.0 release (#41446) 2023-12-06 03:48:26 -07:00
Harmen Stoppels
4fc73bd7f3 minimal support for freebsd (#41434) 2023-12-06 10:27:22 +00:00
Dom Heinzeller
f7fc4b201d Update py-werkzeug version dependency for py-graphene-tornado@2.6.1 (#41426)
* Update py-werkzeug version dependency for py-graphene-tornado@2.6.1

* Add note on diverging version requirements for py-werkzeug in py-graphene-tornado
2023-12-06 10:28:58 +01:00
Jim Edwards
84999b6996 mpiserial: rework installation (#40762) 2023-12-06 09:39:08 +01:00
Harmen Stoppels
b0f193071d bootstrap status: no bash (#41431) 2023-12-06 09:20:59 +01:00
dependabot[bot]
d1c3374ccb build(deps): bump actions/setup-python from 4.7.1 to 4.8.0 (#41441)
Bumps [actions/setup-python](https://github.com/actions/setup-python) from 4.7.1 to 4.8.0.
- [Release notes](https://github.com/actions/setup-python/releases)
- [Commits](65d7f2d534...b64ffcaf5b)

---
updated-dependencies:
- dependency-name: actions/setup-python
  dependency-type: direct:production
  update-type: version-update:semver-minor
...

Signed-off-by: dependabot[bot] <support@github.com>
Co-authored-by: dependabot[bot] <49699333+dependabot[bot]@users.noreply.github.com>
2023-12-06 09:20:14 +01:00
Richard Berger
cba8ba0466 legion: correct cuda dependency for cr version (#41119)
* legion: correct cuda dependency for cr version
* Update var/spack/repos/builtin/packages/legion/package.py

---------

Co-authored-by: Davis Herring <herring@lanl.gov>
2023-12-05 18:36:50 -08:00
Wouter Deconinck
d50f8d7b19 root: sha256 change on latest versions (#41401)
* root: sha256 change on latest version
* root: sha256 change on 6.28.10
* root: replace 6.26.12 by 6.26.14
* root: hash for 6.26.14
2023-12-05 18:20:27 -08:00
kjrstory
969fbbfb5a foam-extend: add v5.0 (#40480)
* foam-extend:add new version
* depreacted versions
2023-12-05 18:11:59 -08:00
Robert Cohn
1cd5397b12 [intel-parallel-studio] Deprecate entire package (#41430) 2023-12-05 17:56:49 -08:00
psakievich
1829dbd7b6 CDash: Spack dumps stage errors to configure phase (#41436) 2023-12-05 22:05:39 +00:00
Philippe Virouleau
9e3b231e6f julia: fix LLVM paches hashes (#41410) 2023-12-05 22:53:40 +01:00
Alec Scott
5911a677d4 py-gidgethub: add new package (#41286)
* py-gidgethub: add new package

* Add main branch version and scope flit/flit-core dependency

* Update var/spack/repos/builtin/packages/py-gidgethub/package.py

Co-authored-by: Manuela Kuhn <36827019+manuelakuhn@users.noreply.github.com>

* Add optional dependencies as variants of package

* Add git url for main version

* Fix variant and dependency ordering

---------

Co-authored-by: Manuela Kuhn <36827019+manuelakuhn@users.noreply.github.com>
2023-12-05 21:26:42 +01:00
Alec Scott
bb60bb4f7a py-gidgetlab: add new package (#41338)
* gidgetlab: add new package

* Convert both cachetools and aiohttp to optional deps with variants

* Fix forgotten variant conditional on cachetools dependency

* Add git url and main version for dev workflows

* Fix variant and dependency ordering

* Remove cachetools variant and merge dependency with aiohttp variant
2023-12-05 21:24:38 +01:00
Victoria Cherkas
ddec75315e Add maintainers to fdb, eckit, ecbuild, metkit, eccodes (#41433)
* Add maintainers to fdb
* Add maintainers to eckit
* Add maintainers to mekit
* Add maintainers to eccodes
* Add maintainers to ecbuild
* Add climbfuji to eccodes maintainers
2023-12-05 13:18:41 -07:00
Veselin Dobrev
8bcb1f8766 MFEM: Add a patch to fix the +gslib+shared+miniapps build (#41399)
* [mfem] Add a patch to resolve issue #41382

* [mfem] Spack CI wants "patch URL must end with ?full_index=1"
2023-12-05 10:26:48 -08:00
Matthew Thompson
5a0ac4ba94 Update versions of GFE packages (#41429) 2023-12-05 10:24:51 -07:00
Lydéric Debusschère
673689d53b py-sphinx: add versions 7.2.4, 7.2.5 and 7.2.6 (#41411)
Co-authored-by: LydDeb <lyderic.debusschere@eolen.com>
2023-12-05 15:07:22 +01:00
Brian Vanderwende
ace8e17f02 libdap4: add explicit RPC dependency (#40019) 2023-12-05 13:11:19 +01:00
Billae
eb9c63541a documentation: add instructions on how to use external opengl (#40987) 2023-12-05 12:59:41 +01:00
Kensuke WATANABE
b9f4d9f6fc sirius: fix build error with Fujitsu compiler (#41101) 2023-12-05 12:54:03 +01:00
Lydéric Debusschère
eda3522ce8 py-sphinxcontrib-moderncmakedomain: add new package (#41331)
Co-authored-by: LydDeb <lyderic.debusschere@eolen.com>
2023-12-05 12:47:25 +01:00
Harmen Stoppels
3cefd73fcc spack buildcache check: use same interface as push (#41378) 2023-12-05 12:44:50 +01:00
Alberto Invernizzi
3547bcb517 openfoam-org: fix for being able to build manually checked out repository (#41000)
* grep WM_PROJECT_VERSION from etc/bashrc

This fixes the problem when building from a manually checked out repo
which might have a different version wrt the one defined in the spack
package (e.g. anything later than 5.0 is known as 5.x by the build
system)

* patch applies to just 5.0, in newer versions it is already addressed

In `5.20171030` there's a commit

c66fba323c

very similar (almost identical) to what the patch `50-etc.patch` does.

So the patch should not be applied to other than `5.0` otherwise it errors.

References:
- https://github.com/OpenFOAM/OpenFOAM-5.x/commits/20171030/etc/bashrc
- 197d9d3bf2/etc/bashrc (L45-L47)
2023-12-05 12:37:57 +01:00
Todd Gamblin
53b528f649 bugfix: sort variants in spack info --variants-by-name (#41389)
This was missed while backporting the new `spack info` command from #40326.

Variants should be sorted by name when invoking `spack info --variants-by-name`.
2023-12-05 12:31:40 +01:00
Mark W. Krentel
798770f9e5 hpctoolkit: add conflict for recent intel-xed (#41413)
Intel made an incompatible change in XED in 2023.08.21 that breaks
hpctoolkit (at run time).  Hpctoolkit develop can adapt (soon will),
but older versions must use xed :2023.07.09.
2023-12-05 11:17:37 +01:00
Jim Edwards
4a920243a0 cprnc: update sha256 for github artifacts (#41418) 2023-12-05 11:13:14 +01:00
Ben Wibking
8727195b84 openblas: fix macOS build when using XCode 15 or newer (#41420)
Co-authored-by: Harmen Stoppels <harmenstoppels@gmail.com>
2023-12-05 09:53:54 +01:00
Massimiliano Culpo
456f2ca40f extensions: improve docs, fix unit-tests (#41425) 2023-12-05 09:49:35 +01:00
dependabot[bot]
b4258aaa25 build(deps): bump docker/metadata-action from 5.2.0 to 5.3.0 (#41423)
Bumps [docker/metadata-action](https://github.com/docker/metadata-action) from 5.2.0 to 5.3.0.
- [Release notes](https://github.com/docker/metadata-action/releases)
- [Commits](e6428a5c4e...31cebacef4)

---
updated-dependencies:
- dependency-name: docker/metadata-action
  dependency-type: direct:production
  update-type: version-update:semver-minor
...

Signed-off-by: dependabot[bot] <support@github.com>
Co-authored-by: dependabot[bot] <49699333+dependabot[bot]@users.noreply.github.com>
2023-12-05 09:48:29 +01:00
Mitch B
5d9647544a arrow: add versions up to v14.0.1 (#41424) 2023-12-05 09:48:03 +01:00
Brian Van Essen
1fdb6a3e7e Updating the LBANN, Hydrogen, and DiHydrogen recipes (#41390)
* Updating the LBANN, Hydrogen, and DiHydrogen recipes for both new
variants and to make sure that RPATHs are properly setup.

Co-authored-by: bvanessen <bvanessen@users.noreply.github.com>
2023-12-05 09:31:51 +01:00
Robert Cohn
7c77b3a4b2 [intel] deprecate all versions (#41412)
Deprecating intel package, which contains intel classic compilers. This package has not been updated in 3 years. Please use intel-oneapi-compilers instead.
2023-12-04 21:52:55 -07:00
Ye Luo
eb4b8292b6 A few changes to quantum-espresso (#41225)
* gipaw.x installed by cmake if version >= 5c4a4ce.
  gipaw.x will only be installed with cmake if the qe-gipaw version
  is >= 5c4a4ce. Currently, QE source uses the older f5823521 one.
  Here a patch to the submodule_commit_hash_records to use a newer
  qe-gipaw version.
* Update package.py
* Delete var/spack/repos/builtin/packages/quantum-espresso/gipaw-eccee44.patch
* Update package.py
* Restoring gipaw-eccee44 patch
* Update package.py
* Add fox variant in quantum-espresso
* Fix an issue introduced in #36484. Patches are 7.1 only.
* Change plugin handling.
* formatting.
* Typo correction
* Refine conflict

---------

Co-authored-by: S. Alexis Paz <alexis.paz@gmail.com>
2023-12-04 11:37:05 -08:00
John Biddiscombe
16bc58ea49 Add EGL support to ParaView and Glew (#39800)
* Add EGL support to ParaView and Glew

add a package for egl that provides GL but also adds
EGL libs and headers for projects that need them

Fix a header problem with the opengl package

Format files using black

* better description for egl variant description

Co-authored-by: Vicente Bolea <vicente.bolea@gmail.com>

* better check/setup of non egl variant dependencies

Co-authored-by: Vicente Bolea <vicente.bolea@gmail.com>

* Add biddisco as maintainer

* Fix unused var style warning

* Add egl conflicts for other gl providers

---------

Co-authored-by: Vicente Bolea <vicente.bolea@gmail.com>
2023-12-04 10:53:06 -06:00
Alec Scott
6028ce8bc1 direnv: add v2.33.0 (#41397) 2023-12-04 14:12:13 +01:00
Harmen Stoppels
349e7e4c37 zlib-ng: add v2.1.5 (#41402) 2023-12-04 12:44:10 +01:00
Harmen Stoppels
a982118c1f ci.py: fix missing import (#41391) 2023-12-04 12:14:59 +01:00
Adam J. Stewart
40d12ed7e2 PythonPackage: type hints (#40539)
* PythonPackage: nested config_settings, type hints

* No need to quote PythonPackage

* Use narrower types for now until needed
2023-12-04 10:53:53 +00:00
James Smillie
9e0720207a Windows: fix kit base path and reference to windows registry key (#41388)
* Proper handling of argument passed as semicolon-separated str
* Fix reference to windows registry key in win-wdk
2023-12-03 15:35:13 -08:00
Jaelyn Litzinger
88e738c343 Allow exago to use hiop@develop past v1.0.1 (#41384) 2023-12-02 14:06:22 -06:00
Cameron Rutherford
8bbc2e2ade resolve: add package with cuda and rocm support (#40871) 2023-12-01 20:49:11 -06:00
Julien Cortial
1509e54435 Add MUMPS versions 5.6.0, 5.6.1 and 5.6.2 (#41386)
The patch for version 5.5.x still applies to 5.6.x.
2023-12-01 18:48:00 -07:00
Dom Heinzeller
ca164d6619 Fix curl install using Intel compilers (#41380)
When using Intel to build curl, add 'CFLAGS=-we147' to the configure
args to fix error 'compiler does not halt on function prototype
mismatch'
2023-12-01 17:24:05 -07:00
Felix Werner
a632576231 Add XCDF. (#41379) 2023-12-01 14:56:18 -08:00
Felix Werner
70b16cfb59 Add PhotoSpline. (#41374) 2023-12-01 14:44:53 -08:00
Brian Vanderwende
1d89d4dc13 MET fixes for 11.1 and HDF4 support (#41372)
* MET fixes for 11.1 and HDF4 support
* Fix zlib reference in MET
2023-12-01 14:42:36 -08:00
Dewi
bc8a0f56ed removed cmake build version pointing to fork (#41368) 2023-12-01 14:39:45 -08:00
Jack Morrison
4e09396f8a Libfabric: Introduce OPX provider conflict for v1.20.0 (#41343)
* Libfabric: Introduce OPX provider conflict for v1.20.0
* Add message to libfabric 1.20.0 opx provider conflict
2023-12-01 14:35:54 -08:00
Weiqun Zhang
0d488c6e4f amrex: add v23.12 (#41385) 2023-12-01 22:45:58 +01:00
Erik Heeren
50e76bc3d3 py-pyglet: version bump (#41082)
* py-pyglet: version bump

* py-pyglet: use zip instead of whl, update dependencies

* py-pyglet: 2.0.9 and 2.0.10 zips should be downloaded from github

* py-pyglet: style

* py-pyglet: use virtual packages in dependencies

Co-authored-by: Manuela Kuhn <36827019+manuelakuhn@users.noreply.github.com>

* py-pyglet: doesn't depend on py-future any more

* py-pyglet: remove glx dependency

* py-pyglet: back to the pypi zipfiles with patch instead

---------

Co-authored-by: Manuela Kuhn <36827019+manuelakuhn@users.noreply.github.com>
2023-12-01 21:44:30 +01:00
Dave Keeshan
a543fd79f1 verible: add new package (#41270)
* Add initial version of verible to spack
* Update to use explict url path for each release, as the release tagh includes extra data, also added the bottom most point of gcc, gcc9
2023-12-01 10:48:52 -08:00
Adam J. Stewart
ab50aa61db py-keras: add v3.0.0 (#41356)
* py-keras: add v3.0.0

* Older keras actually requires protobuf

* Correct url_for_version

* Capitalization is important

* Keep pil and pydot deps
2023-12-01 18:23:58 +00:00
Richard Berger
d06a102e69 Various FleCSI updates (#41068)
* flecsi: remove deprecated versions
* flecsi: add explicit conflict for backend=hpx +hdf5
* flecsi: propagate +openmp to kokkos and legion
* flecsi: remove doc variant prior to @2.2
   It wouldn't do anything meaningful and won't install the documentation.

---------

Co-authored-by: Tamara Dahlgren <35777542+tldahlgren@users.noreply.github.com>
2023-12-01 09:41:33 -08:00
Rohit Goswami
b0f0d2f1fb dftbplus: Update and add upstream maintainer (#33243)
* dftbp: Update and add upstream maintainer
* dftbp: Trust in the hybrid cmake builds
* dftbp: Handle scalapack better
* dftbp: Refactor as per review
* dftbp: Build shared for python
* dftbp: Address review comments
* dftbp: Add another maintainer
* dftp: Fix typo
* dftbp: Arpack for serial builds only
* dftbp: Update option docs
* dftbp: Update documentation for elsi
* dftbp: Add comment for context
* dftbp: Tighter bounds on python
* dftbp: Add negf only when shared
* dftbp: Fix typo
* dftbp: Update sha256
* dftpb: Add when directive for cmake and ninja
* dftbp: Enforce comment

---------

Co-authored-by: Tamara Dahlgren <dahlgren1@llnl.gov>
Co-authored-by: awvwgk <awvwgk@users.noreply.github.com>
Co-authored-by: iamashwin99 <iamashwin99@users.noreply.github.com>
Co-authored-by: Ashwin Kumar Karnad <46030335+iamashwin99@users.noreply.github.com>
Co-authored-by: Sebastian Ehlert <28669218+awvwgk@users.noreply.github.com>
Co-authored-by: tldahlgren <tldahlgren@users.noreply.github.com>
2023-12-01 09:34:11 -08:00
Victoria Cherkas
6029b600f0 eccodes: add v2.32.0, v2.31.0 (#40770)
* eccodes new versions and dependencies
* Suggested changes for multiple variant defaults
* Update var/spack/repos/builtin/packages/eccodes/package.py

---------

Co-authored-by: Sergey Kosukhin <skosukhin@gmail.com>
2023-12-01 09:25:31 -08:00
dependabot[bot]
e6107e336c build(deps): bump docutils from 0.18.1 to 0.20.1 in /lib/spack/docs (#38174)
Bumps [docutils](https://docutils.sourceforge.io/) from 0.18.1 to 0.20.1.

---
updated-dependencies:
- dependency-name: docutils
  dependency-type: direct:production
  update-type: version-update:semver-minor
...

Signed-off-by: dependabot[bot] <support@github.com>
Co-authored-by: dependabot[bot] <49699333+dependabot[bot]@users.noreply.github.com>
2023-12-01 17:16:34 +01:00
Lydéric Debusschère
9ef57c3c86 py-cma: new package (#41326)
* py-pycma: new package

* rename py-pycma in py-cma; py-cma: use pypi instead of github sources

---------

Co-authored-by: LydDeb <lyderic.debusschere@eolen.com>
2023-12-01 08:54:02 -06:00
Lydéric Debusschère
3b021bb4ac py-mahotas: new package (#41329)
* py-mahotas: new package

* py-mahotas: relax version constraint on numpy

---------

Co-authored-by: LydDeb <lyderic.debusschere@eolen.com>
2023-12-01 08:52:37 -06:00
Richard Berger
42bac83c2e LAMMPS updates (#40879)
* lammps: add new stable version 20230802.1

* lammps: add missing potential download for +mesont

* lammps: fix python package install

* Update var/spack/repos/builtin/packages/lammps/package.py

Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>

* lammps: py-numpy and py-mpi4py should be build and run deps

* lammps: add new 20231121 release

- MPIIO package has been removed -> disable mpiio variant
- LAMMPS_EXCEPTIONS is now always on -> disable exceptions variant
- CMake 3.16+ is now required
- Kokkos 4.1.0 is now supported

---------

Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>
2023-12-01 07:13:56 -07:00
Lydéric Debusschère
7e38e9e515 py-xmlplain: new package (#41324)
Co-authored-by: LydDeb <lyderic.debusschere@eolen.com>
2023-12-01 08:02:24 -06:00
Lydéric Debusschère
cf5ffedc23 py-requests-file: new package (#41328)
Co-authored-by: LydDeb <lyderic.debusschere@eolen.com>
2023-12-01 08:00:23 -06:00
Lydéric Debusschère
3a9aea753d [add] py-autodocsumm: new package (#41309)
Co-authored-by: LydDeb <lyderic.debusschere@eolen.com>
2023-12-01 07:53:57 -06:00
Lydéric Debusschère
c61da8381c py-sphinx-jinja2-compat: new package (#41310)
* [add] py-sphinx-jinja2-compat: new package

* py-whey-pth: new package, dependence of py-sphinx-jinja2-compat

---------

Co-authored-by: LydDeb <lyderic.debusschere@eolen.com>
2023-12-01 07:53:02 -06:00
Lydéric Debusschère
8de814eddf py-sphinx-removed-in: new package (#41325)
* py-sphinx-removed-in: new package

* py-sphinx-removed-in: fix dependence

---------

Co-authored-by: LydDeb <lyderic.debusschere@eolen.com>
2023-12-01 07:43:40 -06:00
Satish Balay
c9341a2532 petsc, py-petsc4py: add v3.20.2 (#41366) 2023-12-01 07:42:48 -06:00
Manuela Kuhn
8b202b3fb2 py-urllib3: add 2.1.0 and 2.0.7 (#41358) 2023-12-01 07:39:18 -06:00
Dom Heinzeller
2ecc260e0e Update py-cylc-flow (add version 8.2.3) (#41209)
* Add missing runtime dependency on py-colorama to py-ansimarkup

* Add py-metomi-isodatetime@3.1.0

* New package py-graphql-relay

* Update py-cylc-flowi, add version 8.2.3

* Fix merge conflict

* Revert mistake in var/spack/repos/builtin/packages/py-cylc-flow/package.py

* Update py-metomi-isodatetime dependencies for py-cylc-flow

* Add 'climbfuji' to list of maintainers for py-cylc-flow
2023-12-01 07:33:34 -06:00
Christopher Christofi
6130fe8f57 py-beartype: new package with versions 0.15.0 and 0.16.2 (#39759)
* py-beartype: new package with version 0.15.0

* Update var/spack/repos/builtin/packages/py-beartype/package.py

Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>

* py-beartype: depend on python 3.8 or higher

* py-beartype: add new version 0.16.2

---------

Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>
2023-12-01 07:29:30 -06:00
Adam J. Stewart
d3aa7a620e py-mpi4py: fix build with Apple Clang (#41362)
* py-mpi4py: fix build with Apple Clang

* [@spackbot] updating style on behalf of adamjstewart

---------

Co-authored-by: adamjstewart <adamjstewart@users.noreply.github.com>
2023-12-01 05:33:14 -06:00
dependabot[bot]
2794e14870 build(deps): bump pygments from 2.17.1 to 2.17.2 in /lib/spack/docs (#41212)
Bumps [pygments](https://github.com/pygments/pygments) from 2.17.1 to 2.17.2.
- [Release notes](https://github.com/pygments/pygments/releases)
- [Changelog](https://github.com/pygments/pygments/blob/2.17.2/CHANGES)
- [Commits](https://github.com/pygments/pygments/compare/2.17.1...2.17.2)

---
updated-dependencies:
- dependency-name: pygments
  dependency-type: direct:production
  update-type: version-update:semver-patch
...

Signed-off-by: dependabot[bot] <support@github.com>
Co-authored-by: dependabot[bot] <49699333+dependabot[bot]@users.noreply.github.com>
2023-12-01 12:29:42 +01:00
dependabot[bot]
cc1e990c7e build(deps): bump sphinx-rtd-theme in /lib/spack/docs (#41305)
Bumps [sphinx-rtd-theme](https://github.com/readthedocs/sphinx_rtd_theme) from 1.3.0 to 2.0.0.
- [Changelog](https://github.com/readthedocs/sphinx_rtd_theme/blob/master/docs/changelog.rst)
- [Commits](https://github.com/readthedocs/sphinx_rtd_theme/compare/1.3.0...2.0.0)

---
updated-dependencies:
- dependency-name: sphinx-rtd-theme
  dependency-type: direct:production
  update-type: version-update:semver-major
...

Signed-off-by: dependabot[bot] <support@github.com>
Co-authored-by: dependabot[bot] <49699333+dependabot[bot]@users.noreply.github.com>
2023-12-01 12:29:22 +01:00
dependabot[bot]
59e6b0b100 build(deps): bump mypy from 1.7.0 to 1.7.1 in /lib/spack/docs (#41243)
Bumps [mypy](https://github.com/python/mypy) from 1.7.0 to 1.7.1.
- [Changelog](https://github.com/python/mypy/blob/master/CHANGELOG.md)
- [Commits](https://github.com/python/mypy/compare/v1.7.0...v1.7.1)

---
updated-dependencies:
- dependency-name: mypy
  dependency-type: direct:production
  update-type: version-update:semver-patch
...

Signed-off-by: dependabot[bot] <support@github.com>
Co-authored-by: dependabot[bot] <49699333+dependabot[bot]@users.noreply.github.com>
2023-12-01 09:22:23 +01:00
dependabot[bot]
ec53d02814 build(deps): bump docker/metadata-action from 5.0.0 to 5.2.0 (#41371)
Bumps [docker/metadata-action](https://github.com/docker/metadata-action) from 5.0.0 to 5.2.0.
- [Release notes](https://github.com/docker/metadata-action/releases)
- [Commits](96383f4557...e6428a5c4e)

---
updated-dependencies:
- dependency-name: docker/metadata-action
  dependency-type: direct:production
  update-type: version-update:semver-minor
...

Signed-off-by: dependabot[bot] <support@github.com>
Co-authored-by: dependabot[bot] <49699333+dependabot[bot]@users.noreply.github.com>
2023-12-01 09:21:56 +01:00
dependabot[bot]
389c77cf83 build(deps): bump mypy from 1.6.1 to 1.7.1 in /.github/workflows/style (#41242)
Bumps [mypy](https://github.com/python/mypy) from 1.6.1 to 1.7.1.
- [Changelog](https://github.com/python/mypy/blob/master/CHANGELOG.md)
- [Commits](https://github.com/python/mypy/compare/v1.6.1...v1.7.1)

---
updated-dependencies:
- dependency-name: mypy
  dependency-type: direct:production
  update-type: version-update:semver-minor
...

Signed-off-by: dependabot[bot] <support@github.com>
Co-authored-by: dependabot[bot] <49699333+dependabot[bot]@users.noreply.github.com>
2023-12-01 09:20:56 +01:00
Vicente Bolea
17c87b4c29 vtk-m: bump vtk-m 2.1.0 (#41351)
* vtk-m: bump vtk-m 2.1.0

* Update package.py

* Update package.py
2023-11-30 20:18:15 -08:00
Thomas Helfer
91453c5ba0 Add support for new versions of TFEL and MGIS (#41357)
* Add new versions to TFEL and MGIS
2023-11-30 19:47:57 -07:00
Robert Cohn
a587a10c86 [intel-mpi] deprecation (#41322) 2023-11-30 19:52:42 -05:00
Derek Ryan Strong
cfe77fcd90 r: add license and missing versions and fix rmath build directory (#41260)
* Add R license and missing versions
* Fix rmath build directory
2023-11-30 16:18:02 -08:00
Matthieu Dorier
6cf36a1817 mochi-margo: added version 0.15.0 (#41319) 2023-11-30 15:32:24 -08:00
Matthieu Dorier
ee40cfa830 mochi-thallium: adding a few new versions (#41323)
* mochi-thallium: added a few newer versions
* mochi-thallium: added constraint on the version of margo required
* removed thallium 0.12 which needs updating
* mochi-thallium: fixed hash for version 0.12.0
* removed thallium 0.12 which needs updating (again)
2023-11-30 15:19:32 -08:00
Harmen Stoppels
04f64d4ac6 tests: use temporary_store (#41369) 2023-11-30 15:11:35 -08:00
jmlapre
779fef7d41 trilinos: new pytrilinos2 variant (#40615) 2023-11-30 14:08:58 -07:00
Richard Berger
5be3ca396b Singularity-EOS update (#41333)
* singularity-eos: deprecate v1.6 versions and remove unused code
* singularity-eos: add v1.8.0
2023-11-30 12:55:25 -08:00
Dave Keeshan
e420441bc2 Fix flex for build and link, limit gcc to 7 or greater (#41335) 2023-11-30 12:51:48 -08:00
Dave Keeshan
a039dc16fa Move compiler renaming to filter_compiler_wrappers (#41336) 2023-11-30 12:48:59 -08:00
Christopher Christofi
b31c89b110 perl-carp-assert: add new package with version 0.22 (#41347)
* perl-carp-assert: add new package with version 0.22
* fix style
2023-11-30 12:46:24 -08:00
Christopher Christofi
bc4f3d6cbd perl-parse-yapp: add new package with version 1.21 (#41348) 2023-11-30 12:37:26 -08:00
Matthias Wolf
40209506b7 acfl: truncate version version number (#41354)
When using `spack external find acfl`, we get the full version string
with 4 components in `packages.yaml`.  This PR truncates the version
nubmer when finding the `armpl` component to be able to run without
intervention.
2023-11-30 12:32:10 -08:00
Massimiliano Culpo
6ff07c7753 Fix issue with latest mypy (#41363) 2023-11-30 20:31:03 +01:00
Adam J. Stewart
d874c6d79c py-tensorflow-estimator: add new versions (#41364) 2023-11-30 10:54:11 -08:00
Adam J. Stewart
927e739e0a GDAL: add v3.8.1 (#41365) 2023-11-30 10:51:42 -08:00
Tom Scogland
dd607d11d5 developer tools stack try 2 (#40921)
* developer tools stack try 2

This version is actually in use locally and has largely stabilized, at
least on x86.  Some packages are still a challenge on ppc64le, but maybe
worth keeping this working as a set.

* add packages, try to get container with newer gcc

* remove reuse: true

* try to get cmake to build on medium, 25 minutes is too long

* add lsd package and add to dev tools stack

* clean up fzf dependency and sorting

* Update share/spack/gitlab/cloud_pipelines/stacks/developer_tools/spack.yaml

* cuda: add 12.3.0 (#40827)

* Switch to dashes

* yet more underscores

---------

Co-authored-by: Paul R. C. Kent <kentpr@ornl.gov>
2023-11-30 18:32:21 +00:00
Harmen Stoppels
d436e97fc6 reuse concretization: allow externals from remote when locally configured (#35975)
This looks to me like the best compromise regarding externals in a
build cache. I wouldn't want `spack install` on my machine to install
specs that were marked external on another. At the same time there are
centers that control the target systems on which spack is used, and
would want to use external in buildcaches.

As a solution, reuse concretization will now consider those externals
used in buildcaches that match a locally configured external in
packages.yaml.

So for example person A installs and pushes specs with this config:

```yaml
packages:
  ncurses:
    externals:
    - spec: ncurses@6.0.12345 +feature
      prefix: /usr
```

and person B concretizes and installs using that buildcache with the
following config:

```yaml
packages:
  ncurses:
    externals:
    - spec: ncurses@6
    prefix: /usr
```

the spec will be reused (or rather, will be considered for reuse...)
2023-11-30 09:38:05 -08:00
Harmen Stoppels
f3983d60c2 tests: add missing mutable db (#41359) 2023-11-30 18:37:35 +01:00
Harmen Stoppels
40e705d39e tests: fix side effects of default_config fixture (#41361)
* tests: default_config drop scope

* use default_config elsewhere

* use parse_install_tree for missing defaults in default config
2023-11-30 18:19:10 +01:00
Harmen Stoppels
d92457467a test_variant_propagation_with_unify_false: missing fixture (#41345) 2023-11-30 17:27:53 +01:00
Harmen Stoppels
4c2734fe14 --scope: lazy defaults (#41353) 2023-11-30 15:35:21 +01:00
Taillefumier Mathieu
34d791189d Update SIRIUS version for CP2K master (#41264)
* Update SIRIUS version for CP2K master

* Update var/spack/repos/builtin/packages/cp2k/package.py

Co-authored-by: Rocco Meli <r.meli@bluemail.ch>

---------

Co-authored-by: Rocco Meli <r.meli@bluemail.ch>
2023-11-30 04:08:22 -07:00
Vinícius
eec9eced1b simgrid: add v3.34 and v3.35 (#41340) 2023-11-30 11:23:57 +01:00
Christopher Christofi
3bc8a7aa5f use double quotes where spack style finds errors (#41349) 2023-11-30 09:46:02 +01:00
Massimiliano Culpo
3b045c289d Fix a typo in an integrity constraint (#41334) 2023-11-30 09:44:51 +01:00
Harmen Stoppels
4b93c57d44 argparse: make scope choices lazy s.t. validation in tests works (#41344) 2023-11-30 08:37:11 +01:00
Harmen Stoppels
377e7de0d2 tests: fix issue with os.environ binding (#41342) 2023-11-30 07:18:41 +01:00
Greg Sjaardema
0a9c84dd25 SEACAS: new release (#41273)
Replace last release due to build issues on windows. Tag was applied incorrectly
2023-11-29 21:38:05 -07:00
Chris White
2ececcd03e MFEM: add mpi link dir (#41337)
Also fix netcdf-c zlib reference
2023-11-29 21:32:50 -07:00
Adam J. Stewart
f4f67adf49 py-numba: add v0.58.1 (#41262)
* py-numba: add v0.58.1

* Passing tests
2023-11-30 00:17:34 +01:00
Adam J. Stewart
220898b4de py-pygeos: add v0.14 (#41248)
* py-pygeos: add v0.14

* Python is also a link dep
2023-11-30 00:15:07 +01:00
Luc Berger
450f938056 kokkos: add v4.2.00 (#41203)
* Kokkos: adding version 4.2.00 to the package
* Kokkos: adding AMD GPU arch
* kokkos@4.2.00 +sycl: patch numeric traits unit test

---------

Co-authored-by: eugeneswalker <eugenesunsetwalker@gmail.com>
Co-authored-by: Todd Gamblin <tgamblin@llnl.gov>
2023-11-29 22:47:15 +00:00
Massimiliano Culpo
889b729e52 Refactor a test to not use the "working_env" fixture (#41308)
Co-authored-by: Harmen Stoppels <me@harmenstoppels.nl>
2023-11-29 22:14:57 +01:00
Sergio Alexis Paz
3987604b89 Add gipaw when building quantum-espresso with cmake (#41142)
* gipaw.x installed by cmake if version >= 5c4a4ce.

gipaw.x will only be installed with cmake if the qe-gipaw version
is >= 5c4a4ce. Currently, QE source uses the older f5823521 one.
Here a patch to the submodule_commit_hash_records to use a newer
qe-gipaw version.
2023-11-29 12:16:27 -08:00
Andrey Perestoronin
b6f8cb821c intel-oneapi-ccl 2021.11.1: added new version to packages (#41300)
* added new packages

* align release with ccl patch

* revert version on compiler classics
2023-11-29 10:09:32 -07:00
Mikael Simberg
72216b503f dla-future: Add conflicts for compilation issues pre-0.3.1 (#41317)
* dla-future: Add conflict for pedantic warnings turning into errors

* dla-future: Add conflicts for nvcc/fmt/Umpire compilation issues
2023-11-29 15:10:27 +01:00
Harmen Stoppels
c06f353f55 Simplify _create_mock_configuration_scopes (#41318) 2023-11-29 14:06:41 +01:00
Mikael Simberg
367ca3f0ec fmt: Add git attribute (#41293) 2023-11-29 12:50:28 +01:00
Harmen Stoppels
2c4bc287b8 cuda: fix compiler conflicts (#41304) 2023-11-29 12:14:39 +01:00
Harmen Stoppels
fcb3d62093 unit tests: use --verbose to see order on macos (#41314) 2023-11-29 11:29:17 +01:00
John W. Parent
306377684b CMake: add v3.27.9 (#41301) 2023-11-29 02:19:29 -07:00
Massimiliano Culpo
29b75a7ace Fix an issue with deconcretization/reconcretization of environments (#41294) 2023-11-29 09:09:16 +01:00
Paul R. C. Kent
4b41b11c30 cuda: add 12.3.0 (#40827) 2023-11-28 13:28:28 -08:00
afzpatel
92e0d42b64 update hipblas rocalution, rocsolver, rocsparse to new syntax (#40135)
* initial commit to update hipblas rocalution, rocsolver, rocsparse to new syntax
* add rocblas test changes and fixes for hipblas and rocsolver tests
* fix styling
* remove updates for rocblas
2023-11-28 12:49:07 -08:00
afzpatel
1ebd37d20c fix hip tests and bump hip-examples to 5.6.1 (#40928)
* Initial commit to fix hip tests and bump hip-examples to 5.6.1
* fix styling
* add installation of hip samples to share folder
2023-11-28 12:17:10 -08:00
Adam J. Stewart
b719c905f1 apple-libuuid: update installation directory (#40416)
* apple-libuuid: update installation directory

Copy design of Apple GL
2023-11-28 10:13:55 -08:00
eugeneswalker
430b2dff5c e4s ci: disable gpu test stack (#41296) 2023-11-28 18:02:00 +01:00
Tom Payerle
ef8e6a969c vtk: Restrict application of patch xdmf2-hdf51.13.2.patch (#40266)
The changes in patch xdmf2-hdf51.13.2.patch have effectively
been added to vtk@9.2.3 (commit e81a2fe)

So restrict application of patch fo @9:9.2
2023-11-28 11:27:58 -05:00
Massimiliano Culpo
0e65e84768 ASP-based solver: use a unique ID counter (#41290)
* solver: use a unique counter for condition, triggers and effects

* Do not reset counters when re-running setup

  What we need is just a unique ID, it doesn't need
  to start from zero every time.
2023-11-28 16:28:54 +01:00
Seth R. Johnson
e0da7154ad celeritas: new version 0.4.0 (#41288) 2023-11-28 14:44:15 +00:00
Juan Miguel Carceller
6f08daf670 root: add a webgui patch (#41289)
* root: add a webgui patch

* Update var/spack/repos/builtin/packages/root/package.py

Co-authored-by: Massimiliano Culpo <massimiliano.culpo@gmail.com>

* Add also the versions that don't need the webgui patch

* Fix hash

---------

Co-authored-by: jmcarcell <jmcarcell@users.noreply.github.com>
Co-authored-by: Massimiliano Culpo <massimiliano.culpo@gmail.com>
2023-11-28 07:33:48 -07:00
Tom Scogland
c2d29ca38c libvips requires pkg-config to find glib (#41184) 2023-11-28 14:42:16 +01:00
Raffaele Solcà
f037ef7451 Fix elpa flags (missing optimization) (#41252)
Setting CFLAGS/FCFLAGS overrides the default optimization flags.

This commit brings them back.
2023-11-28 11:31:30 +01:00
dependabot[bot]
f84557a81b build(deps): bump vermin from 1.5.2 to 1.6.0 in /.github/workflows/style (#41285)
Bumps [vermin](https://github.com/netromdk/vermin) from 1.5.2 to 1.6.0.
- [Release notes](https://github.com/netromdk/vermin/releases)
- [Commits](https://github.com/netromdk/vermin/compare/v1.5.2...v1.6.0)

---
updated-dependencies:
- dependency-name: vermin
  dependency-type: direct:production
  update-type: version-update:semver-minor
...

Signed-off-by: dependabot[bot] <support@github.com>
Co-authored-by: dependabot[bot] <49699333+dependabot[bot]@users.noreply.github.com>
2023-11-28 09:38:38 +00:00
Alec Scott
18efd808da GoPackage: add new build system for Go packages (#41164)
Co-authored-by: Tom Scogland <scogland1@llnl.gov>
Co-authored-by: Wouter Deconinck <wdconinc@gmail.com>
Co-authored-by: Massimiliano Culpo <massimiliano.culpo@gmail.com>
2023-11-28 10:33:46 +01:00
Wouter Deconinck
5299b84319 qt-*: new versions 6.6.1 (#41281)
* qt-*: new versions 6.6.1

* qt-quick3d: fixup
2023-11-28 02:18:54 -07:00
Adam J. Stewart
70fb0b35e5 py-transformers: add v4.35.2 (#41266) 2023-11-28 10:17:52 +01:00
Alec Scott
4f7f3cbbdf smee-client: add new package (#41280) 2023-11-28 08:34:49 +01:00
Jose E. Roman
4205ac74e8 slepc: add v3.20.1 (#41274) 2023-11-27 20:53:45 -06:00
Jack Morrison
72ed14e4a9 libfabric: Add version 1.20.0 (#41277) 2023-11-27 19:04:44 -07:00
Dave Keeshan
ed54359454 Move compiler renaming to filter_compiler_wrappers (#41275) 2023-11-27 18:16:03 -07:00
Dave Keeshan
ea610d3fe2 iverilog-vpi: filter compiler wrappers from a few files (#41244) 2023-11-27 17:44:44 -07:00
John W. Parent
cd33becebc CMake: add version 3.27.8 (#41094) 2023-11-27 15:09:44 -07:00
Jim Edwards
8ccfe9f710 cprnc: add new package (#41237) 2023-11-27 14:02:04 -07:00
Eric Berquist
abc294e3a2 Update SST packages to 13.1.0 (#41220)
* Update SST packages to 13.1.0

* Allow mismatch between sst-core dependency and current macro version

* SST does not work with Python 3.12 yet

* Sanity check install binaries for sst-core

* Elements compiles with OTF2 but not OTF

* Version bounds in specs are inclusive

* Remove not-strictly-necessary file check
2023-11-27 14:55:22 -06:00
Alec Scott
c482534c1d CargoPackage: add new build system for Cargo packages (#41192)
Co-authored-by: Tom Scogland <scogland1@llnl.gov>
2023-11-27 20:15:16 +00:00
Robert Cohn
fbec91e491 handle use of an unconfigured compiler (#41213) 2023-11-27 11:57:10 -07:00
Andrey Perestoronin
3d744e7c95 intel-oneapi 2024.0.0: added new version to packages (#41135)
* oneapi 2024.0.0 release

* oneapi v2 directory support and some cleanups

* sycl abi change requires 2024 compilers for packages that use sycl

---------

Co-authored-by: Robert Cohn <robert.s.cohn@intel.com>
2023-11-27 13:13:04 -05:00
Dave Keeshan
b4bafbbf7e verilator: add v5.018 (#41256)
Add all version since 4.108, deprecate previous version, issues with flex,
switch from veripool to github for releases
2023-11-27 10:24:49 -07:00
Juan Miguel Carceller
bd3a1d28bf Simplify a few CMakePackages by removing redundant directives (#41163)
Co-authored-by: jmcarcell <jmcarcell@users.noreply.github.com>
2023-11-27 17:43:39 +01:00
Harmen Stoppels
e0ef78b26e docs: refer to oci build cache from containers.rst (#41269) 2023-11-27 16:36:00 +00:00
Satish Balay
d768e6ea5c Balay/xsdk 1.0.0 updates (#41180)
* superlu-dist: add v8.2.1 for xsdk

* heffte, phist build fixes on tioga

* exago: build fixes on polaris

---------

Co-authored-by: Veselin Dobrev <dobrev@llnl.gov>
2023-11-27 09:57:41 -06:00
Harmen Stoppels
8d0e0d5c77 tests: fix more cases of env variables (#41226) 2023-11-27 16:37:31 +01:00
Anton Kozhevnikov
13b711f620 [sirius] update spack recipe; add v7.5.0 (#41233)
* update spack recipe

* [@spackbot] updating style on behalf of toxa81

* change  from @develop to @7.5.0

* return dependency on boost_filesystem

* return dependency on boost_filesystem

* remove boost filesystem as agreed by @RMeli and  @simonpintarelli

---------

Co-authored-by: toxa81 <toxa81@users.noreply.github.com>
2023-11-27 16:28:19 +01:00
Nisarg Patel
d76a774957 libpsm3: add v11.5.1.1 (#41231) 2023-11-27 15:52:19 +01:00
Brian Vanderwende
ee8e40003b vapor: add new recipe (#40707) 2023-11-27 15:48:04 +01:00
Adam J. Stewart
dc715d9840 py-llvmlite: add new versions (#41247) 2023-11-27 15:43:49 +01:00
Derek Ryan Strong
89173b6d24 fpart: add license and variants (#41257) 2023-11-27 15:25:07 +01:00
stepanvanecek
848d270548 sys-sage: update repo url, rework recipe (#41005)
Co-authored-by: Stepan Vanecek <stepan.vanecek@tum.de>
Co-authored-by: Massimiliano Culpo <massimiliano.culpo@gmail.com>
2023-11-27 15:21:57 +01:00
fpruvost
ea347b6468 pastix: add v6.3.1 (#41265) 2023-11-27 15:03:04 +01:00
Dave Keeshan
b1b4ef6d1b Add patch so that ccache can compile with the standard gcc@12 version (#41249) 2023-11-27 14:33:30 +01:00
Thomas Madlener
c564b2d969 googletest: Add 1.13.0 and 1.14.0 tags (#41253)
* Add latest tags for googletest

* Implement proper url_for_version

* Fix hashes for older versions
2023-11-27 07:12:49 -05:00
Massimiliano Culpo
343517e794 Improve semantic for packages:all:require (#41239)
An `all` requirement is emitted for a package if all variants referenced are defined by it. Otherwise, the constraint is rejected.
2023-11-27 12:41:16 +01:00
Harmen Stoppels
6fff0d4aed libxsmm: relax arch requirement (#41193)
* libxsmm: relax arch requirement

* libxsmm: add a fixed commit from main
2023-11-27 11:55:33 +01:00
Alberto Invernizzi
34bce3f490 Remove old conflict with gcc@10.3.0 (#41254)
The conflict is captured in CudaPackage and redundant in umpire
2023-11-27 09:29:19 +01:00
Rocco Meli
7cb70e3258 force cp2k cuda/rocm variant on elpa (#41241) 2023-11-27 09:08:50 +01:00
Chris Richardson
df777dbbaa py-fenics-basix: update for main and future 0.8.0 (#40838)
* Update to latest version

* Add dependency

* revert

* address PR comments

* Correct dependencies for 0.7 to 0.8 transition

* Fix cmake line.

* Update nanobind dep

---------

Co-authored-by: Matt Archer <ma595@cam.ac.uk>
Co-authored-by: Jack S. Hale <mail@jackhale.co.uk>
Co-authored-by: Garth N. Wells <gnw20@cam.ac.uk>
2023-11-25 16:42:54 -06:00
Morten Kristensen
f28ccae3df py-vermin: add latest version 1.6.0 (#41261) 2023-11-25 14:42:58 -07:00
svengoldberg
ecdc296ef8 py-heat: add new package (#39394)
* heat: Create new spack package

* t8code: Add maintainer

* t8code: Add variant descriptions

* t8code: Add second maintainer

* t8code: Add another maintainer

* heat: Changes after review

* heat: Fix style test error

* heat: Delete obsolete install_options and re-add package homepage

* heat: Add dependency on py-setuptools

---------

Co-authored-by: Sven Goldberg <sven.goldberg@dlr.de>
2023-11-25 08:56:27 -06:00
Erik Heeren
9b5c85e919 py-sqlalchemy-utils, py-sql-alchemy: version bump (#41081)
* py-sqlalchemy-utils, py-sql-alchemy: version bump

* Update var/spack/repos/builtin/packages/py-sqlalchemy-utils/package.py

Co-authored-by: Manuela Kuhn <36827019+manuelakuhn@users.noreply.github.com>

---------

Co-authored-by: Manuela Kuhn <36827019+manuelakuhn@users.noreply.github.com>
2023-11-25 08:53:00 -06:00
Erik Heeren
ea8dcb73db py-dictdiffer: version bump (#41080)
* py-dictdiffer: version bump

* py-dictdiffer: removed runtime py-setuptools dependency in 0.9.0

* Update var/spack/repos/builtin/packages/py-dictdiffer/package.py

Co-authored-by: Manuela Kuhn <36827019+manuelakuhn@users.noreply.github.com>

---------

Co-authored-by: Manuela Kuhn <36827019+manuelakuhn@users.noreply.github.com>
2023-11-25 08:51:13 -06:00
Moritz Kern
089e117904 Update py-neo (#39213)
* add 0.12.0

* remove whitespace

* update deps

* Update var/spack/repos/builtin/packages/py-neo/package.py

Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>

* add dep for python 3.8+

* add dep for python 3.8+ with 0.12.0

---------

Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>
2023-11-25 08:40:10 -06:00
Wouter Deconinck
1456d9b727 py-stashcp: new package (#41091)
* py-stashcp: new package

* py-stashcp: depends_on py-urllib3

* py-stashcp: comment as suggested in review

* Update var/spack/repos/builtin/packages/py-stashcp/package.py
2023-11-25 08:31:56 -06:00
Wouter Deconinck
c485709f62 iwyu: new versions up 0.21 (depends_on llvm-17) (#41235) 2023-11-24 10:09:24 -05:00
Michael Kuhn
7db386a018 Fix multi-word aliases (#41126)
PR #40929 reverted the argument parsing to make `spack --verbose
install` work again. It looks like `--verbose` is the only instance
where this kind of argument inheritance is used since all other commands
override arguments with the same name instead. For instance, `spack
--bootstrap clean` does not invoke `spack clean --bootstrap`.

Therefore, fix multi-line aliases again by parsing the resolved
arguments and instead explicitly pass down `args.verbose` to commands.
2023-11-24 15:56:42 +01:00
Massimiliano Culpo
92d076e683 spack graph: fix coloring with environments (#41240)
If we use all specs, we won't color correctly build-only dependencies
2023-11-24 10:08:21 +01:00
joscot-linaro
f70ef51f1a linaro-forge: update for 23.1 (#41236) 2023-11-24 09:15:47 +01:00
Jógvan Magnus Haugaard Olsen
e9d968d95f pfunit: add version 4.7.4 (#41232) 2023-11-24 09:04:37 +01:00
Nathalie Furmento
918d6baed4 starpu: add release 1.4.2 (#41238) 2023-11-24 09:02:51 +01:00
Loris Ercole
624df2a1bb nlcglib: pass cuda_arch setting to kokkos dependency (#39725)
When building with `+cuda`, the specified `cuda_arch` was not passed to kokkos,
leading to a wrong concretization.
2023-11-23 17:49:00 +01:00
Massimiliano Culpo
ee0d3a3be2 ASP-based solver: don't error for type mismatch on preferences (#41138)
This commit discards type mismatches or failures to validate a package preference during concretization. The values discarded are logged as debug level messages. It also adds a config audit to help users spot misconfigurations in packages.yaml preferences.
2023-11-23 11:30:39 +01:00
Mark Abraham
de64ce5541 rdma-core: add new variants for a library without Python dependencies (#41195)
These variants allow packages that use rdma-core as a library to avoid
dependencies on python infrastructure that is not useful to them.
2023-11-23 09:52:57 +01:00
Raffaele Solcà
f556e52bf6 Add dla-future 0.3.1 (#41219) 2023-11-23 09:23:20 +01:00
Todd Gamblin
81e7d39bd2 Update CHANGELOG.md from v0.21.0
Co-authored-by: Harmen Stoppels <me@harmenstoppels.nl>
2023-11-22 14:39:05 -08:00
Harmen Stoppels
61055d9ee5 test_which: do not mutate os.environ 2023-11-22 14:22:37 -08:00
afzpatel
c1a8bb2a12 composable-kernel, migraphx: Fix build on CentOS8 (#41206) 2023-11-22 20:43:45 +01:00
Juan Miguel Carceller
7e9ddca0ff gloo: add a patch for building with gcc 12 (#41169) 2023-11-22 20:39:01 +01:00
Jen Herting
7cad4bb8d9 [nettle] depend on spack managed openssl (#40783) 2023-11-22 20:37:36 +01:00
Thomas Madlener
2d71c6bb8e dd4hep: add v1.27.1 (#41202)
* Make sure that geant4 comes with cxxstd that should be OK
2023-11-22 20:29:46 +01:00
Alec Scott
285de8ad4d fzf: add v0.44.1 (#41204) 2023-11-22 20:21:53 +01:00
Manuela Kuhn
89a0ea01a7 pulseaudio: add missing m4 dependency (#41216) 2023-11-22 20:20:59 +01:00
Stephen Sachs
e49f55ba53 aocc: help compiler find include paths and libstdc++.so (#40450)
Add --gcc-toolchain option by default.
Only add these paths if c++ libs and include files are available and the compiler was built with gcc
2023-11-22 09:59:20 -08:00
Thomas Madlener
3c54177c5d edm4hep: add latest tag for 0.10.2 (#41201) 2023-11-22 10:16:39 -07:00
Harmen Stoppels
24a38e6782 setup_platform_environment before package env mods (#41205)
This roughly restores the order of operation from Spack 0.20,
where where `AutotoolsPackage.setup_build_environment` would
override the env variable set in `setup_platform_environment` on
macOS.
2023-11-22 17:32:13 +01:00
Massimiliano Culpo
3cf7f7b800 ASP-based solver: don't emit spurious debug output (#41218)
When improving the error message, we started #showing in the
answer set a lot more symbols - but we forgot to suppress the
debug messages warning about UNKNOWN SYMBOLs
2023-11-22 16:06:46 +01:00
LucaMarradi
d7e756a26b onnxruntime: fix the call to as_string() operator (#41087)
* onnxruntime: fix the call to as_string() operator

* Update var/spack/repos/builtin/packages/py-onnxruntime/package.py

Co-authored-by: Wouter Deconinck <wdconinc@gmail.com>

* Update var/spack/repos/builtin/packages/py-onnxruntime/package.py

Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>

* Update var/spack/repos/builtin/packages/py-onnxruntime/package.py

Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>

* py-onnxruntime: rm now-unused stringpiece_1_10.patch

---------

Co-authored-by: Wouter Deconinck <wdconinc@gmail.com>
Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>
2023-11-22 07:23:52 -06:00
Tom Scogland
721f15bbeb hub: add v2.14.2, update to go module (#41183)
* packages/hub: add new version, update to module

Hub now uses a go module to build, needs different env vars, and we're
on a very, very old version before that.  Deprecate the old ones so we
can clean out that old build once we pass a spack version.

* cleanup suggested by @adamjstewart
2023-11-22 07:22:22 -06:00
Michael Kuhn
efa316aafa perl: add missing gmake dependency (#41210) 2023-11-22 11:17:47 +01:00
Michael Kuhn
6ac23545ec python: add missing gmake dependency (#41211) 2023-11-22 11:17:27 +01:00
Alex Richert
432f5d64e3 Add cxx17_flag to intel.py (#41207)
* Add cxx17_flag to intel.py
2023-11-21 18:08:02 -07:00
Chris Richardson
f2192a48ce Update py-scikit-build-core to version 0.6.1 (#40779)
* Update to latest version

* Fix linebreak

* Make suggested changes

* bumped to 0.6.1

* Update var/spack/repos/builtin/packages/py-scikit-build-core/package.py

Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>

---------

Co-authored-by: Chris Richardson <cnr12@cam.ac.uk>
Co-authored-by: Matt Archer <ma595@cam.ac.uk>
Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>
2023-11-21 13:17:07 -06:00
Alec Scott
70bed662fc gettext: add v0.22.4 (#41189) 2023-11-21 05:19:16 -07:00
dependabot[bot]
ae38987cb4 build(deps): bump pygments from 2.16.1 to 2.17.1 in /lib/spack/docs (#41191)
Bumps [pygments](https://github.com/pygments/pygments) from 2.16.1 to 2.17.1.
- [Release notes](https://github.com/pygments/pygments/releases)
- [Changelog](https://github.com/pygments/pygments/blob/master/CHANGES)
- [Commits](https://github.com/pygments/pygments/compare/2.16.1...2.17.1)

---
updated-dependencies:
- dependency-name: pygments
  dependency-type: direct:production
  update-type: version-update:semver-minor
...

Signed-off-by: dependabot[bot] <support@github.com>
Co-authored-by: dependabot[bot] <49699333+dependabot[bot]@users.noreply.github.com>
2023-11-21 01:12:50 -07:00
Massimiliano Culpo
b361ffbe22 spack style: fix isort on sl:7 (#41133)
Bump the minimum version required for isort. This should fix
an issue reported on Scientific Linux 7, and due to:

https://github.com/PyCQA/isort/issues/1363
2023-11-21 06:24:37 +01:00
Mark W. Krentel
964440a08b elfutils: add version 0.190 (#41187) 2023-11-20 21:10:21 -07:00
Wouter Deconinck
aeb1bec8f3 qt-base: have QtBase provide qmake, ont QtPackage (#41186) 2023-11-20 20:05:11 -07:00
Mark Abraham
cf163eecc5 gromacs: fix newly added variant (#41178)
In practice, one can only compiler for the Intel Data Center Max GPU
via a SYCL build and the oneAPI compiler. This is unlikely to change,
so we can be explicit about that.
2023-11-20 19:49:34 -07:00
Harmen Stoppels
7ec62d117e py-grpcio* do not assume lib / header dir (#41182) 2023-11-20 15:34:29 -06:00
John W. Parent
5154d69629 MSVC preview version breaks clingo build (#41185)
Co-authored-by: Harmen Stoppels <harmenstoppels@gmail.com>
2023-11-20 21:55:07 +01:00
Alec Scott
d272c49fb6 rust: add v1.73.0 and add support for external openssl certs (#41161)
Co-authored-by: Tom Scogland <scogland1@llnl.gov>
2023-11-20 21:35:26 +01:00
Alec Scott
868a3c43e4 llvm: Remove python bindings when >= v17 (#41160)
Co-authored-by: Tom Scogland <scogland1@llnl.gov>
2023-11-20 14:10:13 +01:00
Marc Perache
73858df14d Catch2: add variant to choose cxx standard (#40996) 2023-11-20 11:31:17 +01:00
Sergio Sánchez Ramírez
8003f18709 openblas: optimize flags for A64FX (#41093) 2023-11-20 11:20:11 +01:00
Adam J. Stewart
87a9b428e5 py-scipy: add v1.11.4 (#41158) 2023-11-20 11:10:28 +01:00
Scott Wittenburg
714a362f94 mpich: support ch3:sock for a non busy-polling option (#40964) 2023-11-20 11:00:39 +01:00
Alec Scott
4636d6ec62 restic: add v0.16.2 (#41168) 2023-11-20 10:46:59 +01:00
Alec Scott
a015078c36 bfs: add v3.0.4 (#41165) 2023-11-20 10:00:31 +01:00
Alec Scott
ec2a0c8847 rclone: add v1.64.2 (#41166) 2023-11-20 10:00:15 +01:00
Alec Scott
cfae42a514 glab: add v1.35.0 (#41167) 2023-11-20 09:59:55 +01:00
iarspider
2c74ac5b2b Remove a maintainer from CMS packages (#41170) 2023-11-20 01:27:38 -07:00
Wouter Deconinck
df1111c24a sherpa: only enable_or_disable in v3: (#41162) 2023-11-20 09:20:21 +01:00
Harmen Stoppels
55d2ee9160 docs: document how spack picks a version / variant (#41070) 2023-11-20 09:00:53 +01:00
Alec Scott
edda2ef419 npm: only depend on libvips when @6, remove deprecated versions (#41159)
Co-authored-by: Tom Scogland <scogland1@llnl.gov>
2023-11-19 10:13:51 -07:00
Ethan Williams
6159168079 elbencho: add new version and git master branch (#41136)
* elbencho add new version and git master branch

* Update var/spack/repos/builtin/packages/elbencho/package.py

Co-authored-by: Alec Scott <alec@bcs.sh>

* formatting fix requested by @alecbcs

* remove whitespace added in blank line by github auto resolve

---------

Co-authored-by: Ethan W <mail@ethanwilliams.xyz>
Co-authored-by: Alec Scott <alec@bcs.sh>
2023-11-19 08:24:06 -07:00
eugeneswalker
2870b6002c e4s oneapi stack: turn on +sycl: ginkgo, heffte, petsc, upcxx, warpx (#41157)
* e4s oneapi stack: turn on +sycl: ginkgo, heffte, petsc, upcxx, warpx

* comment out warpx; build fails; add note
2023-11-18 22:21:20 -08:00
Christoph Junghans
73a715ad75 votca: add v2023 (#41100) 2023-11-18 16:51:46 -07:00
Mark Abraham
6ca49549d9 gromacs: Add new variants and clarify existing ones (#41115)
* gromacs: Add new variants and clarify existing ones

Add new variants that reflect existing capabilities and defaults in
the upstream build system. Add other existing constraints that were
not yet specified.

* conform to style

* Fix missing hyphens

* Correct cmake variable names
2023-11-18 16:48:00 -07:00
Wouter Deconinck
50051b5619 geant4: new version 11.1.3 (#41112)
* geant4: new version 11.1.3

Release notes: https://geant4.web.cern.ch/download/release-notes/notes-v11.1.3.txt

* geant4: cmake patch with expat fix only until 11.1.2.
2023-11-18 15:39:28 -07:00
dependabot[bot]
3907838e1d build(deps): bump docker/build-push-action from 5.0.0 to 5.1.0 (#41149)
Bumps [docker/build-push-action](https://github.com/docker/build-push-action) from 5.0.0 to 5.1.0.
- [Release notes](https://github.com/docker/build-push-action/releases)
- [Commits](0565240e2d...4a13e500e5)

---
updated-dependencies:
- dependency-name: docker/build-push-action
  dependency-type: direct:production
  update-type: version-update:semver-minor
...

Signed-off-by: dependabot[bot] <support@github.com>
Co-authored-by: dependabot[bot] <49699333+dependabot[bot]@users.noreply.github.com>
2023-11-18 15:30:12 -07:00
Mark Abraham
f12b877e51 heffte: add sycl variant (#41132)
* heffte: add sycl variant

This targets the oneAPI SYCL compiler with oneMKL as FFT
implementation library.

* Require oneAPI compiler for sycl variant
2023-11-18 09:21:50 -07:00
Massimiliano Culpo
a701b24ad3 libksba: add v1.6.5 (#41129) 2023-11-18 09:18:19 -07:00
Adam J. Stewart
c60a806f0e py-matplotlib: add v3.7.4, v3.8.2 (#41156) 2023-11-18 09:16:51 -07:00
Vanessasaurus
df7747eb9a Automated deployment to update package flux-sched 2023-11-18 (#41153)
Co-authored-by: github-actions <github-actions@users.noreply.github.com>
2023-11-18 09:13:49 -07:00
Vanessasaurus
81130274f4 Automated deployment to update package flux-core 2023-11-18 (#41154)
Co-authored-by: github-actions <github-actions@users.noreply.github.com>
2023-11-18 09:13:06 -07:00
Vanessasaurus
2428c10703 Automated deployment to update package flux-security 2023-11-18 (#41152)
Co-authored-by: github-actions <github-actions@users.noreply.github.com>
2023-11-18 09:11:36 -07:00
Wouter Deconinck
d171f314c7 py-pygithub: new versions, dependencies (#41072)
* py-pygithub: new versions, dependencies

* py-pygithub: reordered dependencies per requirements.txt

* py-pygithub: depends on py-setuptools-scm
2023-11-18 08:57:46 -07:00
Wouter Deconinck
16f4c53cd4 py-bokeh: new version 3.3.1, and supporting packages (#41089)
* py-bokeh: new version 3.3.1

* py-xyzservices: new package

* py-bokeh, py-xyzservices: update homepages

Co-authored-by: Manuela Kuhn <36827019+manuelakuhn@users.noreply.github.com>

* py-bokeh: depends on newer py-numpy

Co-authored-by: Manuela Kuhn <36827019+manuelakuhn@users.noreply.github.com>

* Apply suggestions from code review

Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>

---------

Co-authored-by: Manuela Kuhn <36827019+manuelakuhn@users.noreply.github.com>
Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>
2023-11-18 08:47:45 -07:00
Moritz Kern
e8f09713be Update py-elephant (#39200)
* add elephant version v0.12.0 and 0.13.0

* update copyright

* reformat according to black format errors

* restore maintainers directive

* Update var/spack/repos/builtin/packages/py-elephant/package.py

Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>

* add dependency python 3.8+

* sorted dependencies

* sort dependencies from newest to oldest

* add deps for @master

* removed dependency for master, since it is included in 0.12.0:

* removed dependency for python 3.7+ , since 3.7+ is the lowest supported version anyway

* removed specific deps for master, since master is always newer than all stable releases

* updated numpy dependency for Elephant 0.12.0:

* Update var/spack/repos/builtin/packages/py-elephant/package.py

Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>

* Update var/spack/repos/builtin/packages/py-elephant/package.py

Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>

* removed upper bounds for py-quantities, omitting v0.14.0

* add elephant v0.14.0

* update required quantities version

---------

Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>
2023-11-18 07:42:57 -07:00
Lydéric Debusschère
063c28e559 py-cleo: add versions 2.0.0 2.0.1; add maintainers (#40611)
* py-cleo: add versions 2.0.0 2.0.1; add maintainers

* py-cleo: add forgotten dependence

* py-cleo: update from review: remove preferred version, remove a dependence, fix py-rapidfuzz version

* py-cleo: deprecated version 1.0.0a5; add version 1.0.0; update dependences

* py-cleo: add version 2.1.0; update version range of dependences

* py-crashtest: add version 0.4.1, dependence of py-cleo

* py-cleo: update dependence

Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>

* py-cleo: update dependence py-clikit

Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>

* py-cleo: update dependence py-rapidfuzz

Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>

* py-rapidfuzz: add version 2.2.0 dependence of py-cleo@2

* py-cleo: fix version range of py-crashtest

* py-rapidfuzz: fix dependences; add py-rapidfuzz-capi and py-jarowinkler

---------

Co-authored-by: LydDeb <lyderic.debusschere@eolen.com>
Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>
2023-11-18 08:28:56 -06:00
Hariharan Devarajan
31ec1be85f Release DLIO Profiler Py 0.0.2 (#41127) 2023-11-18 07:58:56 -06:00
Erik Heeren
7137c43407 py-jsonpath-ng: version bump (#41078)
* py-jsonpath-ng: version bump

* py-jsonpath-ng: fix typo in version number
2023-11-18 07:54:50 -06:00
Erik Heeren
f474c87814 py-gitpython: version bump (#41079) 2023-11-18 07:53:55 -06:00
Juan Miguel Carceller
edf872c94b py-pyh5py: reorder dependencies from newest version to oldest (#41137)
Co-authored-by: jmcarcell <jmcarcell@users.noreply.github.com>
2023-11-18 07:48:34 -06:00
Michael Kuhn
223e5b8ca2 Fix invalid escape sequences (#41130)
Using Python 3.12 in a freshly cloned Spack repository results in
warnings such as this:
```
==> Warning: invalid escape sequence '\$'
==> Warning: invalid escape sequence '\('
==> Warning: invalid escape sequence '\.'
==> Warning: invalid escape sequence '\.'
```
These will turn into errors in 3.13, so fix them. All of them actually
do not need to be regexes, so convert them into normal strings.
2023-11-18 07:43:35 -06:00
Moritz Kern
cb764ce41c Update py-quantities (#39201)
* add version 0.14.1

* formatting

* style checks

* fix style errors

* remove old versions

* fix typo

* style

* update maintainers directive

* sort dependencies from newest to oldest

* Update var/spack/repos/builtin/packages/py-quantities/package.py

Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>

* Update var/spack/repos/builtin/packages/py-quantities/package.py

Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>

* sort dependencies from newest to oldest

* removed upper bounds for python version

* Update var/spack/repos/builtin/packages/py-quantities/package.py

Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>

* remove dependency on Python 3.7 +, since 3.7 is the lowest supported version anyway

---------

Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>
2023-11-18 07:12:58 -06:00
Brian Van Essen
9383953f76 Hydrogen package: avoid newer openblas on power (#41143) 2023-11-17 14:20:33 -08:00
Stephen Herbener
9ad134c594 Add cxxstd variant to ecflow, update with latest ecflow version (#41120)
* Added recent versions to ecflow/package.py, as well as added a cxxstd variant that is
needed to set BOOST_NO_CXX98_FUNCTION_BASE appropriately when building with C++17 standard.
* Fixed pep8 style error in the ecflow package.py script.
* Remov
* Removed cxxstd variant since the ecflow cmake configuration was already specifying
to use the c++17 standard for newer versions. The use of the BOOST_NO_CXX98_FUNCTION_BASE
define is now triggered by the ecflow version.
2023-11-17 13:34:17 -08:00
Mark Abraham
ec8bd38c4e Permit packages that depend on Intel oneAPI packages to access sdk (#41117)
* Permit packages that depend on Intel oneAPI packages to access sdk

* Implement and use IntelOneapiLibraryPackageWithSdk

* Restore libs property to IntelOneapiLibraryPackage

* Conform to style

* Provide new class to infrastructure

* Treat sdk/include as the main include
2023-11-17 14:59:04 +00:00
Wouter Deconinck
81e73b4dd4 root: new version 6.30.00 (#41118)
* root: new version 6.30.00

There is a new release of ROOT, v6.30.00, with release notes at https://root.cern/doc/v630/release-notes.html.

In addition to some deprecations of build options, this updates the C++ standard to 17 or higher (well, 20), and increases the vc minimum version.

* vc: new version 1.4.4

* [@spackbot] updating style on behalf of wdconinc

---------

Co-authored-by: wdconinc <wdconinc@users.noreply.github.com>
2023-11-17 08:49:01 -06:00
Thomas Madlener
53c7edb0ad lcio: Add latest tag 2.20.1 (#41102) 2023-11-17 08:24:43 -06:00
Massimiliano Culpo
54ab0872f2 py-archspec: add v0.2.2 (#41110) 2023-11-17 11:22:32 +01:00
Harmen Stoppels
1b66cbacf0 llvm: patch missing cstdint include (#41108)
* llvm: patch missing cstdint include
2023-11-17 10:17:25 +01:00
Kelly (KT) Thompson
a3d6714c8b [doxygen] Add versions 1.9.7 and 1.9.8. (#41123)
* [doxygen] Add versions 1.9.7 and 1.9.8.
* Fix has for 1.9.8.
2023-11-16 19:44:17 -07:00
bk
da2e53b2ee r-rlang: add v1.1.1, v1.1.2 (#41114) 2023-11-16 19:24:20 -07:00
597 changed files with 10269 additions and 2277 deletions

View File

@@ -23,7 +23,7 @@ jobs:
operating_system: ["ubuntu-latest", "macos-latest"]
steps:
- uses: actions/checkout@b4ffde65f46336ab88eb53be808477a3936bae11 # @v2
- uses: actions/setup-python@65d7f2d534ac1bc67fcd62888c5f4f3d2cb2b236 # @v2
- uses: actions/setup-python@0a5c61591373683505ea898e09a3ea4f39ef2b9c # @v2
with:
python-version: ${{inputs.python_version}}
- name: Install Python packages

View File

@@ -159,7 +159,7 @@ jobs:
brew install cmake bison@2.7 tree
- name: Checkout
uses: actions/checkout@b4ffde65f46336ab88eb53be808477a3936bae11
- uses: actions/setup-python@65d7f2d534ac1bc67fcd62888c5f4f3d2cb2b236 # @v2
- uses: actions/setup-python@0a5c61591373683505ea898e09a3ea4f39ef2b9c # @v2
with:
python-version: "3.12"
- name: Bootstrap clingo

View File

@@ -57,7 +57,7 @@ jobs:
- name: Checkout
uses: actions/checkout@b4ffde65f46336ab88eb53be808477a3936bae11 # @v2
- uses: docker/metadata-action@96383f45573cb7f253c731d3b3ab81c87ef81934
- uses: docker/metadata-action@31cebacef4805868f9ce9a0cb03ee36c32df2ac4
id: docker_meta
with:
images: |
@@ -113,7 +113,7 @@ jobs:
password: ${{ secrets.DOCKERHUB_TOKEN }}
- name: Build & Deploy ${{ matrix.dockerfile[0] }}
uses: docker/build-push-action@0565240e2d4ab88bba5387d719585280857ece09
uses: docker/build-push-action@4a13e500e55cf31b7a5d59a38ab2040ab0f42f56
with:
context: dockerfiles/${{ matrix.dockerfile[0] }}
platforms: ${{ matrix.dockerfile[1] }}

View File

@@ -17,7 +17,7 @@ jobs:
- uses: actions/checkout@b4ffde65f46336ab88eb53be808477a3936bae11
with:
fetch-depth: 0
- uses: actions/setup-python@65d7f2d534ac1bc67fcd62888c5f4f3d2cb2b236
- uses: actions/setup-python@0a5c61591373683505ea898e09a3ea4f39ef2b9c
with:
python-version: 3.9
- name: Install Python packages

View File

@@ -2,6 +2,6 @@ black==23.11.0
clingo==5.6.2
flake8==6.1.0
isort==5.12.0
mypy==1.6.1
mypy==1.7.1
types-six==1.16.21.9
vermin==1.5.2
vermin==1.6.0

View File

@@ -54,7 +54,7 @@ jobs:
- uses: actions/checkout@b4ffde65f46336ab88eb53be808477a3936bae11 # @v2
with:
fetch-depth: 0
- uses: actions/setup-python@65d7f2d534ac1bc67fcd62888c5f4f3d2cb2b236 # @v2
- uses: actions/setup-python@0a5c61591373683505ea898e09a3ea4f39ef2b9c # @v2
with:
python-version: ${{ matrix.python-version }}
- name: Install System packages
@@ -101,7 +101,7 @@ jobs:
- uses: actions/checkout@b4ffde65f46336ab88eb53be808477a3936bae11 # @v2
with:
fetch-depth: 0
- uses: actions/setup-python@65d7f2d534ac1bc67fcd62888c5f4f3d2cb2b236 # @v2
- uses: actions/setup-python@0a5c61591373683505ea898e09a3ea4f39ef2b9c # @v2
with:
python-version: '3.11'
- name: Install System packages
@@ -159,7 +159,7 @@ jobs:
- uses: actions/checkout@b4ffde65f46336ab88eb53be808477a3936bae11 # @v2
with:
fetch-depth: 0
- uses: actions/setup-python@65d7f2d534ac1bc67fcd62888c5f4f3d2cb2b236 # @v2
- uses: actions/setup-python@0a5c61591373683505ea898e09a3ea4f39ef2b9c # @v2
with:
python-version: '3.11'
- name: Install System packages
@@ -194,7 +194,7 @@ jobs:
- uses: actions/checkout@b4ffde65f46336ab88eb53be808477a3936bae11 # @v2
with:
fetch-depth: 0
- uses: actions/setup-python@65d7f2d534ac1bc67fcd62888c5f4f3d2cb2b236 # @v2
- uses: actions/setup-python@0a5c61591373683505ea898e09a3ea4f39ef2b9c # @v2
with:
python-version: ${{ matrix.python-version }}
- name: Install Python packages
@@ -215,7 +215,7 @@ jobs:
$(which spack) bootstrap disable spack-install
$(which spack) solve zlib
common_args=(--dist loadfile --tx '4*popen//python=./bin/spack-tmpconfig python -u ./bin/spack python' -x)
$(which spack) unit-test --cov --cov-config=pyproject.toml --cov-report=xml:coverage.xml "${common_args[@]}"
$(which spack) unit-test --verbose --cov --cov-config=pyproject.toml --cov-report=xml:coverage.xml "${common_args[@]}"
- uses: codecov/codecov-action@eaaf4bedf32dbdc6b720b63067d99c4d77d6047d
with:
flags: unittests,macos

View File

@@ -19,7 +19,7 @@ jobs:
runs-on: ubuntu-latest
steps:
- uses: actions/checkout@b4ffde65f46336ab88eb53be808477a3936bae11
- uses: actions/setup-python@65d7f2d534ac1bc67fcd62888c5f4f3d2cb2b236
- uses: actions/setup-python@0a5c61591373683505ea898e09a3ea4f39ef2b9c
with:
python-version: '3.11'
cache: 'pip'
@@ -38,7 +38,7 @@ jobs:
- uses: actions/checkout@b4ffde65f46336ab88eb53be808477a3936bae11
with:
fetch-depth: 0
- uses: actions/setup-python@65d7f2d534ac1bc67fcd62888c5f4f3d2cb2b236
- uses: actions/setup-python@0a5c61591373683505ea898e09a3ea4f39ef2b9c
with:
python-version: '3.11'
cache: 'pip'

View File

@@ -18,7 +18,7 @@ jobs:
- uses: actions/checkout@b4ffde65f46336ab88eb53be808477a3936bae11
with:
fetch-depth: 0
- uses: actions/setup-python@65d7f2d534ac1bc67fcd62888c5f4f3d2cb2b236
- uses: actions/setup-python@0a5c61591373683505ea898e09a3ea4f39ef2b9c
with:
python-version: 3.9
- name: Install Python packages
@@ -42,7 +42,7 @@ jobs:
- uses: actions/checkout@b4ffde65f46336ab88eb53be808477a3936bae11
with:
fetch-depth: 0
- uses: actions/setup-python@65d7f2d534ac1bc67fcd62888c5f4f3d2cb2b236
- uses: actions/setup-python@0a5c61591373683505ea898e09a3ea4f39ef2b9c
with:
python-version: 3.9
- name: Install Python packages
@@ -66,7 +66,7 @@ jobs:
- uses: actions/checkout@b4ffde65f46336ab88eb53be808477a3936bae11
with:
fetch-depth: 0
- uses: actions/setup-python@65d7f2d534ac1bc67fcd62888c5f4f3d2cb2b236
- uses: actions/setup-python@0a5c61591373683505ea898e09a3ea4f39ef2b9c
with:
python-version: 3.9
- name: Install Python packages

View File

@@ -1,3 +1,290 @@
# v0.21.0 (2023-11-11)
`v0.21.0` is a major feature release.
## Features in this release
1. **Better error messages with condition chaining**
In v0.18, we added better error messages that could tell you what problem happened,
but they couldn't tell you *why* it happened. `0.21` adds *condition chaining* to the
solver, and Spack can now trace back through the conditions that led to an error and
build a tree of causes potential causes and where they came from. For example:
```console
$ spack solve hdf5 ^cmake@3.0.1
==> Error: concretization failed for the following reasons:
1. Cannot satisfy 'cmake@3.0.1'
2. Cannot satisfy 'cmake@3.0.1'
required because hdf5 ^cmake@3.0.1 requested from CLI
3. Cannot satisfy 'cmake@3.18:' and 'cmake@3.0.1
required because hdf5 ^cmake@3.0.1 requested from CLI
required because hdf5 depends on cmake@3.18: when @1.13:
required because hdf5 ^cmake@3.0.1 requested from CLI
4. Cannot satisfy 'cmake@3.12:' and 'cmake@3.0.1
required because hdf5 depends on cmake@3.12:
required because hdf5 ^cmake@3.0.1 requested from CLI
required because hdf5 ^cmake@3.0.1 requested from CLI
```
More details in #40173.
2. **OCI build caches**
You can now use an arbitrary [OCI](https://opencontainers.org) registry as a build
cache:
```console
$ spack mirror add my_registry oci://user/image # Dockerhub
$ spack mirror add my_registry oci://ghcr.io/haampie/spack-test # GHCR
$ spack mirror set --push --oci-username ... --oci-password ... my_registry # set login creds
$ spack buildcache push my_registry [specs...]
```
And you can optionally add a base image to get *runnable* images:
```console
$ spack buildcache push --base-image ubuntu:23.04 my_registry python
Pushed ... as [image]:python-3.11.2-65txfcpqbmpawclvtasuog4yzmxwaoia.spack
$ docker run --rm -it [image]:python-3.11.2-65txfcpqbmpawclvtasuog4yzmxwaoia.spack
```
This creates a container image from the Spack installations on the host system,
without the need to run `spack install` from a `Dockerfile` or `sif` file. It also
addresses the inconvenience of losing binaries of dependencies when `RUN spack
install` fails inside `docker build`.
Further, the container image layers and build cache tarballs are the same files. This
means that `spack install` and `docker pull` use the exact same underlying binaries.
If you previously used `spack install` inside of `docker build`, this feature helps
you save storage by a factor two.
More details in #38358.
3. **Multiple versions of build dependencies**
Increasingly, complex package builds require multiple versions of some build
dependencies. For example, Python packages frequently require very specific versions
of `setuptools`, `cython`, and sometimes different physics packages require different
versions of Python to build. The concretizer enforced that every solve was *unified*,
i.e., that there only be one version of every package. The concretizer now supports
"duplicate" nodes for *build dependencies*, but enforces unification through
transitive link and run dependencies. This will allow it to better resolve complex
dependency graphs in ecosystems like Python, and it also gets us very close to
modeling compilers as proper dependencies.
This change required a major overhaul of the concretizer, as well as a number of
performance optimizations. See #38447, #39621.
4. **Cherry-picking virtual dependencies**
You can now select only a subset of virtual dependencies from a spec that may provide
more. For example, if you want `mpich` to be your `mpi` provider, you can be explicit
by writing:
```
hdf5 ^[virtuals=mpi] mpich
```
Or, if you want to use, e.g., `intel-parallel-studio` for `blas` along with an external
`lapack` like `openblas`, you could write:
```
strumpack ^[virtuals=mpi] intel-parallel-studio+mkl ^[virtuals=lapack] openblas
```
The `virtuals=mpi` is an edge attribute, and dependency edges in Spack graphs now
track which virtuals they satisfied. More details in #17229 and #35322.
Note for packaging: in Spack 0.21 `spec.satisfies("^virtual")` is true if and only if
the package specifies `depends_on("virtual")`. This is different from Spack 0.20,
where depending on a provider implied depending on the virtual provided. See #41002
for an example where `^mkl` was being used to test for several `mkl` providers in a
package that did not depend on `mkl`.
5. **License directive**
Spack packages can now have license metadata, with the new `license()` directive:
```python
license("Apache-2.0")
```
Licenses use [SPDX identifiers](https://spdx.org/licenses), and you can use SPDX
expressions to combine them:
```python
license("Apache-2.0 OR MIT")
```
Like other directives in Spack, it's conditional, so you can handle complex cases like
Spack itself:
```python
license("LGPL-2.1", when="@:0.11")
license("Apache-2.0 OR MIT", when="@0.12:")
```
More details in #39346, #40598.
6. **`spack deconcretize` command**
We are getting close to having a `spack update` command for environments, but we're
not quite there yet. This is the next best thing. `spack deconcretize` gives you
control over what you want to update in an already concrete environment. If you have
an environment built with, say, `meson`, and you want to update your `meson` version,
you can run:
```console
spack deconcretize meson
```
and have everything that depends on `meson` rebuilt the next time you run `spack
concretize`. In a future Spack version, we'll handle all of this in a single command,
but for now you can use this to drop bits of your lockfile and resolve your
dependencies again. More in #38803.
7. **UI Improvements**
The venerable `spack info` command was looking shabby compared to the rest of Spack's
UI, so we reworked it to have a bit more flair. `spack info` now makes much better
use of terminal space and shows variants, their values, and their descriptions much
more clearly. Conditional variants are grouped separately so you can more easily
understand how packages are structured. More in #40998.
`spack checksum` now allows you to filter versions from your editor, or by version
range. It also notifies you about potential download URL changes. See #40403.
8. **Environments can include definitions**
Spack did not previously support using `include:` with The
[definitions](https://spack.readthedocs.io/en/latest/environments.html#spec-list-references)
section of an environment, but now it does. You can use this to curate lists of specs
and more easily reuse them across environments. See #33960.
9. **Aliases**
You can now add aliases to Spack commands in `config.yaml`, e.g. this might enshrine
your favorite args to `spack find` as `spack f`:
```yaml
config:
aliases:
f: find -lv
```
See #17229.
10. **Improved autoloading of modules**
Spack 0.20 was the first release to enable autoloading of direct dependencies in
module files.
The downside of this was that `module avail` and `module load` tab completion would
show users too many modules to choose from, and many users disabled generating
modules for dependencies through `exclude_implicits: true`. Further, it was
necessary to keep hashes in module names to avoid file name clashes.
In this release, you can start using `hide_implicits: true` instead, which exposes
only explicitly installed packages to the user, while still autoloading
dependencies. On top of that, you can safely use `hash_length: 0`, as this config
now only applies to the modules exposed to the user -- you don't have to worry about
file name clashes for hidden dependencies.
Note: for `tcl` this feature requires Modules 4.7 or higher
11. **Updated container labeling**
Nightly Docker images from the `develop` branch will now be tagged as `:develop` and
`:nightly`. The `:latest` tag is no longer associated with `:develop`, but with the
latest stable release. Releases will be tagged with `:{major}`, `:{major}.{minor}`
and `:{major}.{minor}.{patch}`. `ubuntu:18.04` has also been removed from the list of
generated Docker images, as it is no longer supported. See #40593.
## Other new commands and directives
* `spack env activate` without arguments now loads a `default` environment that you do
not have to create (#40756).
* `spack find -H` / `--hashes`: a new shortcut for piping `spack find` output to
other commands (#38663)
* Add `spack checksum --verify`, fix `--add` (#38458)
* New `default_args` context manager factors out common args for directives (#39964)
* `spack compiler find --[no]-mixed-toolchain` lets you easily mix `clang` and
`gfortran` on Linux (#40902)
## Performance improvements
* `spack external find` execution is now much faster (#39843)
* `spack location -i` now much faster on success (#40898)
* Drop redundant rpaths post install (#38976)
* ASP-based solver: avoid cycles in clingo using hidden directive (#40720)
* Fix multiple quadratic complexity issues in environments (#38771)
## Other new features of note
* archspec: update to v0.2.2, support for Sapphire Rapids, Power10, Neoverse V2 (#40917)
* Propagate variants across nodes that don't have that variant (#38512)
* Implement fish completion (#29549)
* Can now distinguish between source/binary mirror; don't ping mirror.spack.io as much (#34523)
* Improve status reporting on install (add [n/total] display) (#37903)
## Windows
This release has the best Windows support of any Spack release yet, with numerous
improvements and much larger swaths of tests passing:
* MSVC and SDK improvements (#37711, #37930, #38500, #39823, #39180)
* Windows external finding: update default paths; treat .bat as executable on Windows (#39850)
* Windows decompression: fix removal of intermediate file (#38958)
* Windows: executable/path handling (#37762)
* Windows build systems: use ninja and enable tests (#33589)
* Windows testing (#36970, #36972, #36973, #36840, #36977, #36792, #36834, #34696, #36971)
* Windows PowerShell support (#39118, #37951)
* Windows symlinking and libraries (#39933, #38599, #34701, #38578, #34701)
## Notable refactors
* User-specified flags take precedence over others in Spack compiler wrappers (#37376)
* Improve setup of build, run, and test environments (#35737, #40916)
* `make` is no longer a required system dependency of Spack (#40380)
* Support Python 3.12 (#40404, #40155, #40153)
* docs: Replace package list with packages.spack.io (#40251)
* Drop Python 2 constructs in Spack (#38720, #38718, #38703)
## Binary cache and stack updates
* e4s arm stack: duplicate and target neoverse v1 (#40369)
* Add macOS ML CI stacks (#36586)
* E4S Cray CI Stack (#37837)
* e4s cray: expand spec list (#38947)
* e4s cray sles ci: expand spec list (#39081)
## Removals, deprecations, and syntax changes
* ASP: targets, compilers and providers soft-preferences are only global (#31261)
* Parser: fix ambiguity with whitespace in version ranges (#40344)
* Module file generation is disabled by default; you'll need to enable it to use it (#37258)
* Remove deprecated "extra_instructions" option for containers (#40365)
* Stand-alone test feature deprecation postponed to v0.22 (#40600)
* buildcache push: make `--allow-root` the default and deprecate the option (#38878)
## Notable Bugfixes
* Bugfix: propagation of multivalued variants (#39833)
* Allow `/` in git versions (#39398)
* Fetch & patch: actually acquire stage lock, and many more issues (#38903)
* Environment/depfile: better escaping of targets with Git versions (#37560)
* Prevent "spack external find" to error out on wrong permissions (#38755)
* lmod: allow core compiler to be specified with a version range (#37789)
## Spack community stats
* 7,469 total packages, 303 new since `v0.20.0`
* 150 new Python packages
* 34 new R packages
* 353 people contributed to this release
* 336 committers to packages
* 65 committers to core
# v0.20.3 (2023-10-31)
## Bugfixes

View File

@@ -66,10 +66,11 @@ Resources:
* **Matrix space**: [#spack-space:matrix.org](https://matrix.to/#/#spack-space:matrix.org):
[bridged](https://github.com/matrix-org/matrix-appservice-slack#matrix-appservice-slack) to Slack.
* [**Github Discussions**](https://github.com/spack/spack/discussions):
not just for discussions, but also Q&A.
* **Mailing list**: [groups.google.com/d/forum/spack](https://groups.google.com/d/forum/spack)
for Q&A and discussions. Note the pinned discussions for announcements.
* **Twitter**: [@spackpm](https://twitter.com/spackpm). Be sure to
`@mention` us!
* **Mailing list**: [groups.google.com/d/forum/spack](https://groups.google.com/d/forum/spack):
only for announcements. Please use other venues for discussions.
Contributing
------------------------

View File

@@ -50,4 +50,4 @@ packages:
# Apple bundles libuuid in libsystem_c version 1353.100.2,
# although the version number used here isn't critical
- spec: apple-libuuid@1353.100.2
prefix: /Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX.sdk
prefix: /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk

View File

@@ -153,7 +153,43 @@ keyring, and trusting all downloaded keys.
List of popular build caches
^^^^^^^^^^^^^^^^^^^^^^^^^^^^
* `Extreme-scale Scientific Software Stack (E4S) <https://e4s-project.github.io/>`_: `build cache <https://oaciss.uoregon.edu/e4s/inventory.html>`_
* `Extreme-scale Scientific Software Stack (E4S) <https://e4s-project.github.io/>`_: `build cache <https://oaciss.uoregon.edu/e4s/inventory.html>`_'
-------------------
Build cache signing
-------------------
By default, Spack will add a cryptographic signature to each package pushed to
a build cache, and verifies the signature when installing from a build cache.
Keys for signing can be managed with the :ref:`spack gpg <cmd-spack-gpg>` command,
as well as ``spack buildcache keys`` as mentioned above.
You can disable signing when pushing with ``spack buildcache push --unsigned``,
and disable verification when installing from any build cache with
``spack install --no-check-signature``.
Alternatively, signing and verification can be enabled or disabled on a per build cache
basis:
.. code-block:: console
$ spack mirror add --signed <name> <url> # enable signing and verification
$ spack mirror add --unsigned <name> <url> # disable signing and verification
$ spack mirror set --signed <name> # enable signing and verification for an existing mirror
$ spack mirror set --unsigned <name> # disable signing and verification for an existing mirror
Or you can directly edit the ``mirrors.yaml`` configuration file:
.. code-block:: yaml
mirrors:
<name>:
url: <url>
signed: false # disable signing and verification
See also :ref:`mirrors`.
----------
Relocation
@@ -182,6 +218,7 @@ section of the configuration:
padded_length: 128
.. _binary_caches_oci:
-----------------------------------------
OCI / Docker V2 registries as build cache
@@ -250,87 +287,13 @@ To significantly speed up Spack in GitHub Actions, binaries can be cached in
GitHub Packages. This service is an OCI registry that can be linked to a GitHub
repository.
A typical workflow is to include a ``spack.yaml`` environment in your repository
that specifies the packages to install, the target architecture, and the build
cache to use under ``mirrors``:
.. code-block:: yaml
spack:
specs:
- python@3.11
config:
install_tree:
root: /opt/spack
padded_length: 128
packages:
all:
require: target=x86_64_v2
mirrors:
local-buildcache: oci://ghcr.io/<organization>/<repository>
A GitHub action can then be used to install the packages and push them to the
build cache:
.. code-block:: yaml
name: Install Spack packages
on: push
env:
SPACK_COLOR: always
jobs:
example:
runs-on: ubuntu-22.04
permissions:
packages: write
steps:
- name: Checkout
uses: actions/checkout@v3
- name: Checkout Spack
uses: actions/checkout@v3
with:
repository: spack/spack
path: spack
- name: Setup Spack
run: echo "$PWD/spack/bin" >> "$GITHUB_PATH"
- name: Concretize
run: spack -e . concretize
- name: Install
run: spack -e . install --no-check-signature
- name: Run tests
run: ./my_view/bin/python3 -c 'print("hello world")'
- name: Push to buildcache
run: |
spack -e . mirror set --oci-username ${{ github.actor }} --oci-password "${{ secrets.GITHUB_TOKEN }}" local-buildcache
spack -e . buildcache push --base-image ubuntu:22.04 --unsigned --update-index local-buildcache
if: ${{ !cancelled() }}
The first time this action runs, it will build the packages from source and
push them to the build cache. Subsequent runs will pull the binaries from the
build cache. The concretizer will ensure that prebuilt binaries are favored
over source builds.
The build cache entries appear in the GitHub Packages section of your repository,
and contain instructions for pulling and running them with ``docker`` or ``podman``.
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
Using Spack's public build cache for GitHub Actions
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
Spack offers a public build cache for GitHub Actions with a set of common packages,
which lets you get started quickly. See the following resources for more information:
* `spack/github-actions-buildcache <https://github.com/spack/github-actions-buildcache>`_
* `spack/setup-spack <https://github.com/spack/setup-spack>`_ for setting up Spack in GitHub
Actions
* `spack/github-actions-buildcache <https://github.com/spack/github-actions-buildcache>`_ for
more details on the public build cache
.. _cmd-spack-buildcache:

View File

@@ -37,7 +37,11 @@ to enable reuse for a single installation, and you can use:
spack install --fresh <spec>
to do a fresh install if ``reuse`` is enabled by default.
``reuse: true`` is the default.
``reuse: dependencies`` is the default.
.. seealso::
FAQ: :ref:`Why does Spack pick particular versions and variants? <faq-concretizer-precedence>`
------------------------------------------
Selection of the target microarchitectures

View File

@@ -82,7 +82,7 @@ class already contains:
.. code-block:: python
depends_on('cmake', type='build')
depends_on("cmake", type="build")
If you need to specify a particular version requirement, you can
@@ -90,7 +90,7 @@ override this in your package:
.. code-block:: python
depends_on('cmake@2.8.12:', type='build')
depends_on("cmake@2.8.12:", type="build")
^^^^^^^^^^^^^^^^^^^
@@ -137,10 +137,10 @@ and without the :meth:`~spack.build_systems.cmake.CMakeBuilder.define` and
def cmake_args(self):
args = [
'-DWHATEVER:STRING=somevalue',
self.define('ENABLE_BROKEN_FEATURE', False),
self.define_from_variant('DETECT_HDF5', 'hdf5'),
self.define_from_variant('THREADS'), # True if +threads
"-DWHATEVER:STRING=somevalue",
self.define("ENABLE_BROKEN_FEATURE", False),
self.define_from_variant("DETECT_HDF5", "hdf5"),
self.define_from_variant("THREADS"), # True if +threads
]
return args
@@ -151,10 +151,10 @@ and CMake simply ignores the empty command line argument. For example the follow
.. code-block:: python
variant('example', default=True, when='@2.0:')
variant("example", default=True, when="@2.0:")
def cmake_args(self):
return [self.define_from_variant('EXAMPLE', 'example')]
return [self.define_from_variant("EXAMPLE", "example")]
will generate ``'cmake' '-DEXAMPLE=ON' ...`` when `@2.0: +example` is met, but will
result in ``'cmake' '' ...`` when the spec version is below ``2.0``.
@@ -193,9 +193,9 @@ a variant to control this:
.. code-block:: python
variant('build_type', default='RelWithDebInfo',
description='CMake build type',
values=('Debug', 'Release', 'RelWithDebInfo', 'MinSizeRel'))
variant("build_type", default="RelWithDebInfo",
description="CMake build type",
values=("Debug", "Release", "RelWithDebInfo", "MinSizeRel"))
However, not every CMake package accepts all four of these options.
Grep the ``CMakeLists.txt`` file to see if the default values are
@@ -205,9 +205,9 @@ package overrides the default variant with:
.. code-block:: python
variant('build_type', default='DebugRelease',
description='The build type to build',
values=('Debug', 'Release', 'DebugRelease'))
variant("build_type", default="DebugRelease",
description="The build type to build",
values=("Debug", "Release", "DebugRelease"))
For more information on ``CMAKE_BUILD_TYPE``, see:
https://cmake.org/cmake/help/latest/variable/CMAKE_BUILD_TYPE.html
@@ -250,7 +250,7 @@ generator is Ninja. To switch to the Ninja generator, simply add:
.. code-block:: python
generator = 'Ninja'
generator = "Ninja"
``CMakePackage`` defaults to "Unix Makefiles". If you switch to the
@@ -258,7 +258,7 @@ Ninja generator, make sure to add:
.. code-block:: python
depends_on('ninja', type='build')
depends_on("ninja", type="build")
to the package as well. Aside from that, you shouldn't need to do
anything else. Spack will automatically detect that you are using
@@ -288,7 +288,7 @@ like so:
.. code-block:: python
root_cmakelists_dir = 'src'
root_cmakelists_dir = "src"
Note that this path is relative to the root of the extracted tarball,
@@ -304,7 +304,7 @@ different sub-directory, simply override ``build_directory`` like so:
.. code-block:: python
build_directory = 'my-build'
build_directory = "my-build"
^^^^^^^^^^^^^^^^^^^^^^^^^
Build and install targets
@@ -324,8 +324,8 @@ library or build the documentation, you can add these like so:
.. code-block:: python
build_targets = ['all', 'docs']
install_targets = ['install', 'docs']
build_targets = ["all", "docs"]
install_targets = ["install", "docs"]
^^^^^^^
Testing

View File

@@ -53,18 +53,24 @@ Install the oneAPI compilers::
Add the compilers to your ``compilers.yaml`` so spack can use them::
spack compiler add `spack location -i intel-oneapi-compilers`/compiler/latest/linux/bin/intel64
spack compiler add `spack location -i intel-oneapi-compilers`/compiler/latest/linux/bin
spack compiler add `spack location -i intel-oneapi-compilers`/compiler/latest/bin
Verify that the compilers are available::
spack compiler list
Note that 2024 and later releases do not include ``icc``. Before 2024,
the package layout was different::
spack compiler add `spack location -i intel-oneapi-compilers`/compiler/latest/linux/bin/intel64
spack compiler add `spack location -i intel-oneapi-compilers`/compiler/latest/linux/bin
The ``intel-oneapi-compilers`` package includes 2 families of
compilers:
* ``intel``: ``icc``, ``icpc``, ``ifort``. Intel's *classic*
compilers.
compilers. 2024 and later releases contain ``ifort``, but not
``icc`` and ``icpc``.
* ``oneapi``: ``icx``, ``icpx``, ``ifx``. Intel's new generation of
compilers based on LLVM.
@@ -89,8 +95,8 @@ Install the oneAPI compilers::
Add the compilers to your ``compilers.yaml`` so Spack can use them::
spack compiler add `spack location -i intel-oneapi-compilers`/compiler/latest/linux/bin/intel64
spack compiler add `spack location -i intel-oneapi-compilers`/compiler/latest/linux/bin
spack compiler add `spack location -i intel-oneapi-compilers`/compiler/latest/bin
spack compiler add `spack location -i intel-oneapi-compilers`/compiler/latest/bin
Verify that the compilers are available::
@@ -146,8 +152,7 @@ Compilers
To use the compilers, add some information about the installation to
``compilers.yaml``. For most users, it is sufficient to do::
spack compiler add /opt/intel/oneapi/compiler/latest/linux/bin/intel64
spack compiler add /opt/intel/oneapi/compiler/latest/linux/bin
spack compiler add /opt/intel/oneapi/compiler/latest/bin
Adapt the paths above if you did not install the tools in the default
location. After adding the compilers, using them is the same
@@ -156,6 +161,12 @@ Another option is to manually add the configuration to
``compilers.yaml`` as described in :ref:`Compiler configuration
<compiler-config>`.
Before 2024, the directory structure was different::
spack compiler add /opt/intel/oneapi/compiler/latest/linux/bin/intel64
spack compiler add /opt/intel/oneapi/compiler/latest/linux/bin
Libraries
---------

View File

@@ -934,9 +934,9 @@ a *virtual* ``mkl`` package is declared in Spack.
.. code-block:: python
# Examples for absolute and conditional dependencies:
depends_on('mkl')
depends_on('mkl', when='+mkl')
depends_on('mkl', when='fftw=mkl')
depends_on("mkl")
depends_on("mkl", when="+mkl")
depends_on("mkl", when="fftw=mkl")
The ``MKLROOT`` environment variable (part of the documented API) will be set
during all stages of client package installation, and is available to both
@@ -972,8 +972,8 @@ a *virtual* ``mkl`` package is declared in Spack.
def configure_args(self):
args = []
...
args.append('--with-blas=%s' % self.spec['blas'].libs.ld_flags)
args.append('--with-lapack=%s' % self.spec['lapack'].libs.ld_flags)
args.append("--with-blas=%s" % self.spec["blas"].libs.ld_flags)
args.append("--with-lapack=%s" % self.spec["lapack"].libs.ld_flags)
...
.. tip::
@@ -989,13 +989,13 @@ a *virtual* ``mkl`` package is declared in Spack.
.. code-block:: python
self.spec['blas'].headers.include_flags
self.spec["blas"].headers.include_flags
and to generate linker options (``-L<dir> -llibname ...``), use the same as above,
.. code-block:: python
self.spec['blas'].libs.ld_flags
self.spec["blas"].libs.ld_flags
See
:ref:`MakefilePackage <makefilepackage>`

View File

@@ -88,7 +88,7 @@ override the ``luarocks_args`` method like so:
.. code-block:: python
def luarocks_args(self):
return ['flag1', 'flag2']
return ["flag1", "flag2"]
One common use of this is to override warnings or flags for newer compilers, as in:

View File

@@ -48,8 +48,8 @@ class automatically adds the following dependencies:
.. code-block:: python
depends_on('java', type=('build', 'run'))
depends_on('maven', type='build')
depends_on("java", type=("build", "run"))
depends_on("maven", type="build")
In the ``pom.xml`` file, you may see sections like:
@@ -72,8 +72,8 @@ should add:
.. code-block:: python
depends_on('java@7:', type='build')
depends_on('maven@3.5.4:', type='build')
depends_on("java@7:", type="build")
depends_on("maven@3.5.4:", type="build")
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
@@ -88,9 +88,9 @@ the build phase. For example:
def build_args(self):
return [
'-Pdist,native',
'-Dtar',
'-Dmaven.javadoc.skip=true'
"-Pdist,native",
"-Dtar",
"-Dmaven.javadoc.skip=true"
]

View File

@@ -86,8 +86,8 @@ the ``MesonPackage`` base class already contains:
.. code-block:: python
depends_on('meson', type='build')
depends_on('ninja', type='build')
depends_on("meson", type="build")
depends_on("ninja", type="build")
If you need to specify a particular version requirement, you can
@@ -95,8 +95,8 @@ override this in your package:
.. code-block:: python
depends_on('meson@0.43.0:', type='build')
depends_on('ninja', type='build')
depends_on("meson@0.43.0:", type="build")
depends_on("ninja", type="build")
^^^^^^^^^^^^^^^^^^^
@@ -121,7 +121,7 @@ override the ``meson_args`` method like so:
.. code-block:: python
def meson_args(self):
return ['--warnlevel=3']
return ["--warnlevel=3"]
This method can be used to pass flags as well as variables.

View File

@@ -118,7 +118,7 @@ so ``PerlPackage`` contains:
.. code-block:: python
extends('perl')
extends("perl")
If your package requires a specific version of Perl, you should
@@ -132,14 +132,14 @@ properly. If your package uses ``Makefile.PL`` to build, add:
.. code-block:: python
depends_on('perl-extutils-makemaker', type='build')
depends_on("perl-extutils-makemaker", type="build")
If your package uses ``Build.PL`` to build, add:
.. code-block:: python
depends_on('perl-module-build', type='build')
depends_on("perl-module-build", type="build")
^^^^^^^^^^^^^^^^^
@@ -165,11 +165,11 @@ arguments to ``Makefile.PL`` or ``Build.PL`` by overriding
.. code-block:: python
def configure_args(self):
expat = self.spec['expat'].prefix
expat = self.spec["expat"].prefix
return [
'EXPATLIBPATH={0}'.format(expat.lib),
'EXPATINCPATH={0}'.format(expat.include),
"EXPATLIBPATH={0}".format(expat.lib),
"EXPATINCPATH={0}".format(expat.include),
]

View File

@@ -83,7 +83,7 @@ base class already contains:
.. code-block:: python
depends_on('qt', type='build')
depends_on("qt", type="build")
If you want to specify a particular version requirement, or need to
@@ -91,7 +91,7 @@ link to the ``qt`` libraries, you can override this in your package:
.. code-block:: python
depends_on('qt@5.6.0:')
depends_on("qt@5.6.0:")
^^^^^^^^^^^^^^^^^^^^^^^^^^
Passing arguments to qmake
@@ -103,7 +103,7 @@ override the ``qmake_args`` method like so:
.. code-block:: python
def qmake_args(self):
return ['-recursive']
return ["-recursive"]
This method can be used to pass flags as well as variables.
@@ -118,7 +118,7 @@ sub-directory by adding the following to the package:
.. code-block:: python
build_directory = 'src'
build_directory = "src"
^^^^^^^^^^^^^^^^^^^^^^

View File

@@ -163,28 +163,28 @@ attributes that can be used to set ``homepage``, ``url``, ``list_url``, and
.. code-block:: python
cran = 'caret'
cran = "caret"
is equivalent to:
.. code-block:: python
homepage = 'https://cloud.r-project.org/package=caret'
url = 'https://cloud.r-project.org/src/contrib/caret_6.0-86.tar.gz'
list_url = 'https://cloud.r-project.org/src/contrib/Archive/caret'
homepage = "https://cloud.r-project.org/package=caret"
url = "https://cloud.r-project.org/src/contrib/caret_6.0-86.tar.gz"
list_url = "https://cloud.r-project.org/src/contrib/Archive/caret"
Likewise, the following ``bioc`` attribute:
.. code-block:: python
bioc = 'BiocVersion'
bioc = "BiocVersion"
is equivalent to:
.. code-block:: python
homepage = 'https://bioconductor.org/packages/BiocVersion/'
git = 'https://git.bioconductor.org/packages/BiocVersion'
homepage = "https://bioconductor.org/packages/BiocVersion/"
git = "https://git.bioconductor.org/packages/BiocVersion"
^^^^^^^^^^^^^^^^^^^^^^^^^
@@ -200,7 +200,7 @@ base class contains:
.. code-block:: python
extends('r')
extends("r")
Take a close look at the homepage for ``caret``. If you look at the
@@ -209,7 +209,7 @@ You should add this to your package like so:
.. code-block:: python
depends_on('r@3.2.0:', type=('build', 'run'))
depends_on("r@3.2.0:", type=("build", "run"))
^^^^^^^^^^^^^^
@@ -227,7 +227,7 @@ and list all of their dependencies in the following sections:
* LinkingTo
As far as Spack is concerned, all 3 of these dependency types
correspond to ``type=('build', 'run')``, so you don't have to worry
correspond to ``type=("build", "run")``, so you don't have to worry
about the details. If you are curious what they mean,
https://github.com/spack/spack/issues/2951 has a pretty good summary:
@@ -330,7 +330,7 @@ the dependency:
.. code-block:: python
depends_on('r-lattice@0.20:', type=('build', 'run'))
depends_on("r-lattice@0.20:", type=("build", "run"))
^^^^^^^^^^^^^^^^^^
@@ -361,20 +361,20 @@ like so:
.. code-block:: python
def configure_args(self):
mpi_name = self.spec['mpi'].name
mpi_name = self.spec["mpi"].name
# The type of MPI. Supported values are:
# OPENMPI, LAM, MPICH, MPICH2, or CRAY
if mpi_name == 'openmpi':
Rmpi_type = 'OPENMPI'
elif mpi_name == 'mpich':
Rmpi_type = 'MPICH2'
if mpi_name == "openmpi":
Rmpi_type = "OPENMPI"
elif mpi_name == "mpich":
Rmpi_type = "MPICH2"
else:
raise InstallError('Unsupported MPI type')
raise InstallError("Unsupported MPI type")
return [
'--with-Rmpi-type={0}'.format(Rmpi_type),
'--with-mpi={0}'.format(spec['mpi'].prefix),
"--with-Rmpi-type={0}".format(Rmpi_type),
"--with-mpi={0}".format(spec["mpi"].prefix),
]

View File

@@ -84,8 +84,8 @@ The ``*.gemspec`` file may contain something like:
.. code-block:: ruby
summary = 'An implementation of the AsciiDoc text processor and publishing toolchain'
description = 'A fast, open source text processor and publishing toolchain for converting AsciiDoc content to HTML 5, DocBook 5, and other formats.'
summary = "An implementation of the AsciiDoc text processor and publishing toolchain"
description = "A fast, open source text processor and publishing toolchain for converting AsciiDoc content to HTML 5, DocBook 5, and other formats."
Either of these can be used for the description of the Spack package.
@@ -98,7 +98,7 @@ The ``*.gemspec`` file may contain something like:
.. code-block:: ruby
homepage = 'https://asciidoctor.org'
homepage = "https://asciidoctor.org"
This should be used as the official homepage of the Spack package.
@@ -112,21 +112,21 @@ the base class contains:
.. code-block:: python
extends('ruby')
extends("ruby")
The ``*.gemspec`` file may contain something like:
.. code-block:: ruby
required_ruby_version = '>= 2.3.0'
required_ruby_version = ">= 2.3.0"
This can be added to the Spack package using:
.. code-block:: python
depends_on('ruby@2.3.0:', type=('build', 'run'))
depends_on("ruby@2.3.0:", type=("build", "run"))
^^^^^^^^^^^^^^^^^

View File

@@ -124,7 +124,7 @@ are wrong, you can provide the names yourself by overriding
.. code-block:: python
import_modules = ['PyQt5']
import_modules = ["PyQt5"]
These tests often catch missing dependencies and non-RPATHed

View File

@@ -63,8 +63,8 @@ run package-specific unit tests.
.. code-block:: python
def installtest(self):
with working_dir('test'):
pytest = which('py.test')
with working_dir("test"):
pytest = which("py.test")
pytest()
@@ -93,7 +93,7 @@ the following dependency automatically:
.. code-block:: python
depends_on('python@2.5:', type='build')
depends_on("python@2.5:", type="build")
Waf only supports Python 2.5 and up.
@@ -113,7 +113,7 @@ phase, you can use:
args = []
if self.run_tests:
args.append('--test')
args.append("--test")
return args

View File

@@ -24,6 +24,16 @@ image, or to set up a proper entrypoint to run the image. These tasks are
usually both necessary and repetitive, so Spack comes with a command
to generate recipes for container images starting from a ``spack.yaml``.
.. seealso::
This page is a reference for generating recipes to build container images.
It means that your environment is built from scratch inside the container
runtime.
Since v0.21, Spack can also create container images from existing package installations
on your host system. See :ref:`binary_caches_oci` for more information on
that topic.
--------------------
A Quick Introduction
--------------------

View File

@@ -9,46 +9,42 @@
Custom Extensions
=================
*Spack extensions* permit you to extend Spack capabilities by deploying your
*Spack extensions* allow you to extend Spack capabilities by deploying your
own custom commands or logic in an arbitrary location on your filesystem.
This might be extremely useful e.g. to develop and maintain a command whose purpose is
too specific to be considered for reintegration into the mainline or to
evolve a command through its early stages before starting a discussion to merge
it upstream.
From Spack's point of view an extension is any path in your filesystem which
respects a prescribed naming and layout for files:
respects the following naming and layout for files:
.. code-block:: console
spack-scripting/ # The top level directory must match the format 'spack-{extension_name}'
├── pytest.ini # Optional file if the extension ships its own tests
├── scripting # Folder that may contain modules that are needed for the extension commands
│   ── cmd # Folder containing extension commands
│   └── filter.py # A new command that will be available
├── tests # Tests for this extension
│   ── cmd # Folder containing extension commands
│   │   └── filter.py # A new command that will be available
│   └── functions.py # Module with internal details
└── tests # Tests for this extension
│ ├── conftest.py
│ └── test_filter.py
└── templates # Templates that may be needed by the extension
In the example above the extension named *scripting* adds an additional command (``filter``)
and unit tests to verify its behavior. The code for this example can be
obtained by cloning the corresponding git repository:
In the example above, the extension is named *scripting*. It adds an additional command
(``spack filter``) and unit tests to verify its behavior.
.. TODO: write an ad-hoc "hello world" extension and make it part of the spack organization
The extension can import any core Spack module in its implementation. When loaded by
the ``spack`` command, the extension itself is imported as a Python package in the
``spack.extensions`` namespace. In the example above, since the extension is named
"scripting", the corresponding Python module is ``spack.extensions.scripting``.
The code for this example extension can be obtained by cloning the corresponding git repository:
.. code-block:: console
$ cd ~/
$ mkdir tmp && cd tmp
$ git clone https://github.com/alalazo/spack-scripting.git
Cloning into 'spack-scripting'...
remote: Counting objects: 11, done.
remote: Compressing objects: 100% (7/7), done.
remote: Total 11 (delta 0), reused 11 (delta 0), pack-reused 0
Receiving objects: 100% (11/11), done.
As you can see by inspecting the sources, Python modules that are part of the extension
can import any core Spack module.
$ git -C /tmp clone https://github.com/spack/spack-scripting.git
---------------------------------
Configure Spack to Use Extensions
@@ -61,7 +57,7 @@ paths to ``config.yaml``. In the case of our example this means ensuring that:
config:
extensions:
- ~/tmp/spack-scripting
- /tmp/spack-scripting
is part of your configuration file. Once this is setup any command that the extension provides
will be available from the command line:
@@ -86,37 +82,32 @@ will be available from the command line:
--implicit select specs that are not installed or were installed implicitly
--output OUTPUT where to dump the result
The corresponding unit tests can be run giving the appropriate options
to ``spack unit-test``:
The corresponding unit tests can be run giving the appropriate options to ``spack unit-test``:
.. code-block:: console
$ spack unit-test --extension=scripting
============================================================== test session starts ===============================================================
platform linux2 -- Python 2.7.15rc1, pytest-3.2.5, py-1.4.34, pluggy-0.4.0
rootdir: /home/mculpo/tmp/spack-scripting, inifile: pytest.ini
========================================== test session starts ===========================================
platform linux -- Python 3.11.5, pytest-7.4.3, pluggy-1.3.0
rootdir: /home/culpo/github/spack-scripting
configfile: pytest.ini
testpaths: tests
plugins: xdist-3.5.0
collected 5 items
tests/test_filter.py ...XX
============================================================ short test summary info =============================================================
XPASS tests/test_filter.py::test_filtering_specs[flags3-specs3-expected3]
XPASS tests/test_filter.py::test_filtering_specs[flags4-specs4-expected4]
tests/test_filter.py ..... [100%]
=========================================================== slowest 20 test durations ============================================================
3.74s setup tests/test_filter.py::test_filtering_specs[flags0-specs0-expected0]
0.17s call tests/test_filter.py::test_filtering_specs[flags3-specs3-expected3]
0.16s call tests/test_filter.py::test_filtering_specs[flags2-specs2-expected2]
0.15s call tests/test_filter.py::test_filtering_specs[flags1-specs1-expected1]
0.13s call tests/test_filter.py::test_filtering_specs[flags4-specs4-expected4]
0.08s call tests/test_filter.py::test_filtering_specs[flags0-specs0-expected0]
0.04s teardown tests/test_filter.py::test_filtering_specs[flags4-specs4-expected4]
0.00s setup tests/test_filter.py::test_filtering_specs[flags4-specs4-expected4]
0.00s setup tests/test_filter.py::test_filtering_specs[flags3-specs3-expected3]
0.00s setup tests/test_filter.py::test_filtering_specs[flags1-specs1-expected1]
0.00s setup tests/test_filter.py::test_filtering_specs[flags2-specs2-expected2]
0.00s teardown tests/test_filter.py::test_filtering_specs[flags2-specs2-expected2]
0.00s teardown tests/test_filter.py::test_filtering_specs[flags1-specs1-expected1]
0.00s teardown tests/test_filter.py::test_filtering_specs[flags0-specs0-expected0]
0.00s teardown tests/test_filter.py::test_filtering_specs[flags3-specs3-expected3]
====================================================== 3 passed, 2 xpassed in 4.51 seconds =======================================================
========================================== slowest 30 durations ==========================================
2.31s setup tests/test_filter.py::test_filtering_specs[kwargs0-specs0-expected0]
0.57s call tests/test_filter.py::test_filtering_specs[kwargs2-specs2-expected2]
0.56s call tests/test_filter.py::test_filtering_specs[kwargs4-specs4-expected4]
0.54s call tests/test_filter.py::test_filtering_specs[kwargs3-specs3-expected3]
0.54s call tests/test_filter.py::test_filtering_specs[kwargs1-specs1-expected1]
0.48s call tests/test_filter.py::test_filtering_specs[kwargs0-specs0-expected0]
0.01s setup tests/test_filter.py::test_filtering_specs[kwargs4-specs4-expected4]
0.01s setup tests/test_filter.py::test_filtering_specs[kwargs2-specs2-expected2]
0.01s setup tests/test_filter.py::test_filtering_specs[kwargs1-specs1-expected1]
0.01s setup tests/test_filter.py::test_filtering_specs[kwargs3-specs3-expected3]
(5 durations < 0.005s hidden. Use -vv to show these durations.)
=========================================== 5 passed in 5.06s ============================================

View File

@@ -0,0 +1,77 @@
.. Copyright 2013-2023 Lawrence Livermore National Security, LLC and other
Spack Project Developers. See the top-level COPYRIGHT file for details.
SPDX-License-Identifier: (Apache-2.0 OR MIT)
==========================
Frequently Asked Questions
==========================
This page contains answers to frequently asked questions about Spack.
If you have questions that are not answered here, feel free to ask on
`Slack <https://slack.spack.io>`_ or `GitHub Discussions
<https://github.com/spack/spack/discussions>`_. If you've learned the
answer to a question that you think should be here, please consider
contributing to this page.
.. _faq-concretizer-precedence:
-----------------------------------------------------
Why does Spack pick particular versions and variants?
-----------------------------------------------------
This question comes up in a variety of forms:
1. Why does Spack seem to ignore my package preferences from ``packages.yaml`` config?
2. Why does Spack toggle a variant instead of using the default from the ``package.py`` file?
The short answer is that Spack always picks an optimal configuration
based on a complex set of criteria\ [#f1]_. These criteria are more nuanced
than always choosing the latest versions or default variants.
.. note::
As a rule of thumb: requirements + constraints > reuse > preferences > defaults.
The following set of criteria (from lowest to highest precedence) explain
common cases where concretization output may seem surprising at first.
1. :ref:`Package preferences <package-preferences>` configured in ``packages.yaml``
override variant defaults from ``package.py`` files, and influence the optimal
ordering of versions. Preferences are specified as follows:
.. code-block:: yaml
packages:
foo:
version: [1.0, 1.1]
variants: ~mpi
2. :ref:`Reuse concretization <concretizer-options>` configured in ``concretizer.yaml``
overrides preferences, since it's typically faster to reuse an existing spec than to
build a preferred one from sources. When build caches are enabled, specs may be reused
from a remote location too. Reuse concretization is configured as follows:
.. code-block:: yaml
concretizer:
reuse: dependencies # other options are 'true' and 'false'
3. :ref:`Package requirements <package-requirements>` configured in ``packages.yaml``,
and constraints from the command line as well as ``package.py`` files override all
of the above. Requirements are specified as follows:
.. code-block:: yaml
packages:
foo:
require:
- "@1.2: +mpi"
Requirements and constraints restrict the set of possible solutions, while reuse
behavior and preferences influence what an optimal solution looks like.
.. rubric:: Footnotes
.. [#f1] The exact list of criteria can be retrieved with the ``spack solve`` command

View File

@@ -111,3 +111,28 @@ CUDA is split into fewer components and is simpler to specify:
prefix: /opt/cuda/cuda-11.0.2/
where ``/opt/cuda/cuda-11.0.2/lib/`` contains ``libcudart.so``.
-----------------------------------
Using an External OpenGL API
-----------------------------------
Depending on whether we have a graphics card or not, we may choose to use OSMesa or GLX to implement the OpenGL API.
If a graphics card is unavailable, OSMesa is recommended and can typically be built with Spack.
However, if we prefer to utilize the system GLX tailored to our graphics card, we need to declare it as an external. Here's how to do it:
.. code-block:: yaml
packages:
libglx:
require: [opengl]
opengl:
buildable: false
externals:
- prefix: /usr/
spec: opengl@4.6
Note that prefix has to be the root of both the libraries and the headers, using is /usr not the path the the lib.
To know which spec for opengl is available use ``cd /usr/include/GL && grep -Ri gl_version``.

View File

@@ -55,6 +55,7 @@ or refer to the full manual below.
getting_started
basic_usage
replace_conda_homebrew
frequently_asked_questions
.. toctree::
:maxdepth: 2

View File

@@ -256,6 +256,11 @@ on the command line, because it can specify constraints on packages
is not possible to specify constraints on dependencies while also keeping
those dependencies optional.
.. seealso::
FAQ: :ref:`Why does Spack pick particular versions and variants? <faq-concretizer-precedence>`
^^^^^^^^^^^^^^^^^^^
Requirements syntax
^^^^^^^^^^^^^^^^^^^
@@ -378,7 +383,33 @@ like this:
which means every spec will be required to use ``clang`` as a compiler.
Note that in this case ``all`` represents a *default set of requirements* -
Requirements on variants for all packages are possible too, but note that they
are only enforced for those packages that define these variants, otherwise they
are disregarded. For example:
.. code-block:: yaml
packages:
all:
require:
- "+shared"
- "+cuda"
will just enforce ``+shared`` on ``zlib``, which has a boolean ``shared`` variant but
no ``cuda`` variant.
Constraints in a single spec literal are always considered as a whole, so in a case like:
.. code-block:: yaml
packages:
all:
require: "+shared +cuda"
the default requirement will be enforced only if a package has both a ``cuda`` and
a ``shared`` variant, and will never be partially enforced.
Finally, ``all`` represents a *default set of requirements* -
if there are specific package requirements, then the default requirements
under ``all`` are disregarded. For example, with a configuration like this:
@@ -386,12 +417,18 @@ under ``all`` are disregarded. For example, with a configuration like this:
packages:
all:
require: '%clang'
require:
- 'build_type=Debug'
- '%clang'
cmake:
require: '%gcc'
require:
- 'build_type=Debug'
- '%gcc'
Spack requires ``cmake`` to use ``gcc`` and all other nodes (including ``cmake``
dependencies) to use ``clang``.
dependencies) to use ``clang``. If enforcing ``build_type=Debug`` is needed also
on ``cmake``, it must be repeated in the specific ``cmake`` requirements.
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
Setting requirements on virtual specs
@@ -435,6 +472,11 @@ them if it must, due to other constraints, and also prefers reusing
installed packages over building new ones that are a better match for
preferences.
.. seealso::
FAQ: :ref:`Why does Spack pick particular versions and variants? <faq-concretizer-precedence>`
Most package preferences (``compilers``, ``target`` and ``providers``)
can only be set globally under the ``all`` section of ``packages.yaml``:

View File

@@ -1,13 +1,13 @@
sphinx==7.2.6
sphinxcontrib-programoutput==0.17
sphinx_design==0.5.0
sphinx-rtd-theme==1.3.0
sphinx-rtd-theme==2.0.0
python-levenshtein==0.23.0
docutils==0.18.1
pygments==2.16.1
docutils==0.20.1
pygments==2.17.2
urllib3==2.1.0
pytest==7.4.3
isort==5.12.0
black==23.11.0
flake8==6.1.0
mypy==1.7.0
mypy==1.7.1

View File

@@ -1047,9 +1047,9 @@ def __bool__(self):
"""Whether any exceptions were handled."""
return bool(self.exceptions)
def forward(self, context: str) -> "GroupedExceptionForwarder":
def forward(self, context: str, base: type = BaseException) -> "GroupedExceptionForwarder":
"""Return a contextmanager which extracts tracebacks and prefixes a message."""
return GroupedExceptionForwarder(context, self)
return GroupedExceptionForwarder(context, self, base)
def _receive_forwarded(self, context: str, exc: Exception, tb: List[str]):
self.exceptions.append((context, exc, tb))
@@ -1072,15 +1072,18 @@ class GroupedExceptionForwarder:
"""A contextmanager to capture exceptions and forward them to a
GroupedExceptionHandler."""
def __init__(self, context: str, handler: GroupedExceptionHandler):
def __init__(self, context: str, handler: GroupedExceptionHandler, base: type):
self._context = context
self._handler = handler
self._base = base
def __enter__(self):
return None
def __exit__(self, exc_type, exc_value, tb):
if exc_value is not None:
if not issubclass(exc_type, self._base):
return False
self._handler._receive_forwarded(self._context, exc_value, traceback.format_tb(tb))
# Suppress any exception from being re-raised:

View File

@@ -286,6 +286,54 @@ def make_error(attribute_name, config_data, summary):
return errors
@config_packages
def _avoid_mismatched_variants(error_cls):
"""Warns if variant preferences have mismatched types or names."""
errors = []
packages_yaml = spack.config.CONFIG.get_config("packages")
def make_error(config_data, summary):
s = io.StringIO()
s.write("Occurring in the following file:\n")
syaml.dump_config(config_data, stream=s, blame=True)
return error_cls(summary=summary, details=[s.getvalue()])
for pkg_name in packages_yaml:
# 'all:' must be more forgiving, since it is setting defaults for everything
if pkg_name == "all" or "variants" not in packages_yaml[pkg_name]:
continue
preferences = packages_yaml[pkg_name]["variants"]
if not isinstance(preferences, list):
preferences = [preferences]
for variants in preferences:
current_spec = spack.spec.Spec(variants)
pkg_cls = spack.repo.PATH.get_pkg_class(pkg_name)
for variant in current_spec.variants.values():
# Variant does not exist at all
if variant.name not in pkg_cls.variants:
summary = (
f"Setting a preference for the '{pkg_name}' package to the "
f"non-existing variant '{variant.name}'"
)
errors.append(make_error(preferences, summary))
continue
# Variant cannot accept this value
s = spack.spec.Spec(pkg_name)
try:
s.update_variant_validate(variant.name, variant.value)
except Exception:
summary = (
f"Setting the variant '{variant.name}' of the '{pkg_name}' package "
f"to the invalid value '{str(variant)}'"
)
errors.append(make_error(preferences, summary))
return errors
#: Sanity checks on package directives
package_directives = AuditClass(
group="packages",
@@ -678,13 +726,37 @@ def _unknown_variants_in_directives(pkgs, error_cls):
@package_directives
def _unknown_variants_in_dependencies(pkgs, error_cls):
"""Report unknown dependencies and wrong variants for dependencies"""
def _issues_in_depends_on_directive(pkgs, error_cls):
"""Reports issues with 'depends_on' directives.
Issues might be unknown dependencies, unknown variants or variant values, or declaration
of nested dependencies.
"""
errors = []
for pkg_name in pkgs:
pkg_cls = spack.repo.PATH.get_pkg_class(pkg_name)
filename = spack.repo.PATH.filename_for_package_name(pkg_name)
for dependency_name, dependency_data in pkg_cls.dependencies.items():
# Check if there are nested dependencies declared. We don't want directives like:
#
# depends_on('foo+bar ^fee+baz')
#
# but we'd like to have two dependencies listed instead.
for when, dependency_edge in dependency_data.items():
dependency_spec = dependency_edge.spec
nested_dependencies = dependency_spec.dependencies()
if nested_dependencies:
summary = (
f"{pkg_name}: invalid nested dependency "
f"declaration '{str(dependency_spec)}'"
)
details = [
f"split depends_on('{str(dependency_spec)}', when='{str(when)}') "
f"into {len(nested_dependencies) + 1} directives",
f"in {filename}",
]
errors.append(error_cls(summary=summary, details=details))
# No need to analyze virtual packages
if spack.repo.PATH.is_virtual(dependency_name):
continue

View File

@@ -25,7 +25,7 @@
import warnings
from contextlib import closing, contextmanager
from gzip import GzipFile
from typing import Dict, List, NamedTuple, Optional, Set, Tuple
from typing import Dict, Iterable, List, NamedTuple, Optional, Set, Tuple
from urllib.error import HTTPError, URLError
import llnl.util.filesystem as fsys
@@ -230,7 +230,11 @@ def _associate_built_specs_with_mirror(self, cache_key, mirror_url):
)
return
spec_list = db.query_local(installed=False, in_buildcache=True)
spec_list = [
s
for s in db.query_local(installed=any, in_buildcache=any)
if s.external or db.query_local_by_spec_hash(s.dag_hash()).in_buildcache
]
for indexed_spec in spec_list:
dag_hash = indexed_spec.dag_hash()
@@ -1601,14 +1605,14 @@ def _get_valid_spec_file(path: str, max_supported_layout: int) -> Tuple[Dict, in
return spec_dict, layout_version
def download_tarball(spec, unsigned=False, mirrors_for_spec=None):
def download_tarball(spec, unsigned: Optional[bool] = False, mirrors_for_spec=None):
"""
Download binary tarball for given package into stage area, returning
path to downloaded tarball if successful, None otherwise.
Args:
spec (spack.spec.Spec): Concrete spec
unsigned (bool): Whether or not to require signed binaries
unsigned: if ``True`` or ``False`` override the mirror signature verification defaults
mirrors_for_spec (list): Optional list of concrete specs and mirrors
obtained by calling binary_distribution.get_mirrors_for_spec().
These will be checked in order first before looking in other
@@ -1629,7 +1633,9 @@ def download_tarball(spec, unsigned=False, mirrors_for_spec=None):
"signature_verified": "true-if-binary-pkg-was-already-verified"
}
"""
configured_mirrors = spack.mirror.MirrorCollection(binary=True).values()
configured_mirrors: Iterable[spack.mirror.Mirror] = spack.mirror.MirrorCollection(
binary=True
).values()
if not configured_mirrors:
tty.die("Please add a spack mirror to allow download of pre-compiled packages.")
@@ -1647,8 +1653,16 @@ def download_tarball(spec, unsigned=False, mirrors_for_spec=None):
# mirror for the spec twice though.
try_first = [i["mirror_url"] for i in mirrors_for_spec] if mirrors_for_spec else []
try_next = [i.fetch_url for i in configured_mirrors if i.fetch_url not in try_first]
mirror_urls = try_first + try_next
mirrors = try_first + try_next
# TODO: turn `mirrors_for_spec` into a list of Mirror instances, instead of doing that here.
def fetch_url_to_mirror(url):
for mirror in configured_mirrors:
if mirror.fetch_url == url:
return mirror
return spack.mirror.Mirror(url)
mirrors = [fetch_url_to_mirror(url) for url in mirror_urls]
tried_to_verify_sigs = []
@@ -1657,14 +1671,17 @@ def download_tarball(spec, unsigned=False, mirrors_for_spec=None):
# we remove support for deprecated spec formats and buildcache layouts.
for try_signed in (True, False):
for mirror in mirrors:
# Override mirror's default if
currently_unsigned = unsigned if unsigned is not None else not mirror.signed
# If it's an OCI index, do things differently, since we cannot compose URLs.
parsed = urllib.parse.urlparse(mirror)
fetch_url = mirror.fetch_url
# TODO: refactor this to some "nice" place.
if parsed.scheme == "oci":
ref = spack.oci.image.ImageReference.from_string(mirror[len("oci://") :]).with_tag(
spack.oci.image.default_tag(spec)
)
if fetch_url.startswith("oci://"):
ref = spack.oci.image.ImageReference.from_string(
fetch_url[len("oci://") :]
).with_tag(spack.oci.image.default_tag(spec))
# Fetch the manifest
try:
@@ -1701,7 +1718,7 @@ def download_tarball(spec, unsigned=False, mirrors_for_spec=None):
except InvalidMetadataFile as e:
tty.warn(
f"Ignoring binary package for {spec.name}/{spec.dag_hash()[:7]} "
f"from {mirror} due to invalid metadata file: {e}"
f"from {fetch_url} due to invalid metadata file: {e}"
)
local_specfile_stage.destroy()
continue
@@ -1723,13 +1740,16 @@ def download_tarball(spec, unsigned=False, mirrors_for_spec=None):
"tarball_stage": tarball_stage,
"specfile_stage": local_specfile_stage,
"signature_verified": False,
"signature_required": not currently_unsigned,
}
else:
ext = "json.sig" if try_signed else "json"
specfile_path = url_util.join(mirror, BUILD_CACHE_RELATIVE_PATH, specfile_prefix)
specfile_path = url_util.join(
fetch_url, BUILD_CACHE_RELATIVE_PATH, specfile_prefix
)
specfile_url = f"{specfile_path}.{ext}"
spackfile_url = url_util.join(mirror, BUILD_CACHE_RELATIVE_PATH, tarball)
spackfile_url = url_util.join(fetch_url, BUILD_CACHE_RELATIVE_PATH, tarball)
local_specfile_stage = try_fetch(specfile_url)
if local_specfile_stage:
local_specfile_path = local_specfile_stage.save_filename
@@ -1742,21 +1762,21 @@ def download_tarball(spec, unsigned=False, mirrors_for_spec=None):
except InvalidMetadataFile as e:
tty.warn(
f"Ignoring binary package for {spec.name}/{spec.dag_hash()[:7]} "
f"from {mirror} due to invalid metadata file: {e}"
f"from {fetch_url} due to invalid metadata file: {e}"
)
local_specfile_stage.destroy()
continue
if try_signed and not unsigned:
if try_signed and not currently_unsigned:
# If we found a signed specfile at the root, try to verify
# the signature immediately. We will not download the
# tarball if we could not verify the signature.
tried_to_verify_sigs.append(specfile_url)
signature_verified = try_verify(local_specfile_path)
if not signature_verified:
tty.warn("Failed to verify: {0}".format(specfile_url))
tty.warn(f"Failed to verify: {specfile_url}")
if unsigned or signature_verified or not try_signed:
if currently_unsigned or signature_verified or not try_signed:
# We will download the tarball in one of three cases:
# 1. user asked for --no-check-signature
# 2. user didn't ask for --no-check-signature, but we
@@ -1779,6 +1799,7 @@ def download_tarball(spec, unsigned=False, mirrors_for_spec=None):
"tarball_stage": tarball_stage,
"specfile_stage": local_specfile_stage,
"signature_verified": signature_verified,
"signature_required": not currently_unsigned,
}
local_specfile_stage.destroy()
@@ -1977,7 +1998,7 @@ def is_backup_file(file):
relocate.relocate_text(text_names, prefix_to_prefix_text)
def _extract_inner_tarball(spec, filename, extract_to, unsigned, remote_checksum):
def _extract_inner_tarball(spec, filename, extract_to, signature_required: bool, remote_checksum):
stagepath = os.path.dirname(filename)
spackfile_name = tarball_name(spec, ".spack")
spackfile_path = os.path.join(stagepath, spackfile_name)
@@ -1997,7 +2018,7 @@ def _extract_inner_tarball(spec, filename, extract_to, unsigned, remote_checksum
else:
raise ValueError("Cannot find spec file for {0}.".format(extract_to))
if not unsigned:
if signature_required:
if os.path.exists("%s.asc" % specfile_path):
suppress = config.get("config:suppress_gpg_warnings", False)
try:
@@ -2046,7 +2067,7 @@ def _tar_strip_component(tar: tarfile.TarFile, prefix: str):
m.linkname = m.linkname[result.end() :]
def extract_tarball(spec, download_result, unsigned=False, force=False, timer=timer.NULL_TIMER):
def extract_tarball(spec, download_result, force=False, timer=timer.NULL_TIMER):
"""
extract binary tarball for given package into install area
"""
@@ -2072,7 +2093,8 @@ def extract_tarball(spec, download_result, unsigned=False, force=False, timer=ti
bchecksum = spec_dict["binary_cache_checksum"]
filename = download_result["tarball_stage"].save_filename
signature_verified = download_result["signature_verified"]
signature_verified: bool = download_result["signature_verified"]
signature_required: bool = download_result["signature_required"]
tmpdir = None
if layout_version == 0:
@@ -2081,7 +2103,9 @@ def extract_tarball(spec, download_result, unsigned=False, force=False, timer=ti
# and another tarball containing the actual install tree.
tmpdir = tempfile.mkdtemp()
try:
tarfile_path = _extract_inner_tarball(spec, filename, tmpdir, unsigned, bchecksum)
tarfile_path = _extract_inner_tarball(
spec, filename, tmpdir, signature_required, bchecksum
)
except Exception as e:
_delete_staged_downloads(download_result)
shutil.rmtree(tmpdir)
@@ -2094,9 +2118,10 @@ def extract_tarball(spec, download_result, unsigned=False, force=False, timer=ti
# the tarball.
tarfile_path = filename
if not unsigned and not signature_verified:
if signature_required and not signature_verified:
raise UnsignedPackageException(
"To install unsigned packages, use the --no-check-signature option."
"To install unsigned packages, use the --no-check-signature option, "
"or configure the mirror with signed: false."
)
# compute the sha256 checksum of the tarball
@@ -2209,7 +2234,7 @@ def install_root_node(spec, unsigned=False, force=False, sha256=None):
# don't print long padded paths while extracting/relocating binaries
with spack.util.path.filter_padding():
tty.msg('Installing "{0}" from a buildcache'.format(spec.format()))
extract_tarball(spec, download_result, unsigned, force)
extract_tarball(spec, download_result, force)
spack.hooks.post_install(spec, False)
spack.store.STORE.db.add(spec, spack.store.STORE.layout)

View File

@@ -16,6 +16,7 @@
import llnl.util.filesystem as fs
from llnl.util import tty
import spack.platforms
import spack.store
import spack.util.environment
import spack.util.executable
@@ -206,16 +207,19 @@ def _root_spec(spec_str: str) -> str:
"""Add a proper compiler and target to a spec used during bootstrapping.
Args:
spec_str (str): spec to be bootstrapped. Must be without compiler and target.
spec_str: spec to be bootstrapped. Must be without compiler and target.
"""
# Add a proper compiler hint to the root spec. We use GCC for
# everything but MacOS and Windows.
if str(spack.platforms.host()) == "darwin":
# Add a compiler requirement to the root spec.
platform = str(spack.platforms.host())
if platform == "darwin":
spec_str += " %apple-clang"
elif str(spack.platforms.host()) == "windows":
spec_str += " %msvc"
else:
elif platform == "windows":
# TODO (johnwparent): Remove version constraint when clingo patch is up
spec_str += " %msvc@:19.37"
elif platform == "linux":
spec_str += " %gcc"
elif platform == "freebsd":
spec_str += " %clang"
target = archspec.cpu.host().family
spec_str += f" target={target}"

View File

@@ -386,7 +386,7 @@ def ensure_module_importable_or_raise(module: str, abstract_spec: Optional[str]
exception_handler = GroupedExceptionHandler()
for current_config in bootstrapping_sources():
with exception_handler.forward(current_config["name"]):
with exception_handler.forward(current_config["name"], Exception):
source_is_enabled_or_raise(current_config)
current_bootstrapper = create_bootstrapper(current_config)
if current_bootstrapper.try_import(module, abstract_spec):
@@ -441,7 +441,7 @@ def ensure_executables_in_path_or_raise(
exception_handler = GroupedExceptionHandler()
for current_config in bootstrapping_sources():
with exception_handler.forward(current_config["name"]):
with exception_handler.forward(current_config["name"], Exception):
source_is_enabled_or_raise(current_config)
current_bootstrapper = create_bootstrapper(current_config)
if current_bootstrapper.try_search_path(executables, abstract_spec):

View File

@@ -19,7 +19,6 @@
import spack.tengine
import spack.util.cpus
import spack.util.executable
from spack.environment import depfile
from ._common import _root_spec
from .config import root_path, spec_for_current_python, store_path
@@ -86,12 +85,9 @@ def __init__(self) -> None:
super().__init__(self.environment_root())
def update_installations(self) -> None:
"""Update the installations of this environment.
The update is done using a depfile on Linux and macOS, and using the ``install_all``
method of environments on Windows.
"""
with tty.SuppressOutput(msg_enabled=False, warn_enabled=False):
"""Update the installations of this environment."""
log_enabled = tty.is_debug() or tty.is_verbose()
with tty.SuppressOutput(msg_enabled=log_enabled, warn_enabled=log_enabled):
specs = self.concretize()
if specs:
colorized_specs = [
@@ -100,11 +96,9 @@ def update_installations(self) -> None:
]
tty.msg(f"[BOOTSTRAPPING] Installing dependencies ({', '.join(colorized_specs)})")
self.write(regenerate=False)
if sys.platform == "win32":
with tty.SuppressOutput(msg_enabled=log_enabled, warn_enabled=log_enabled):
self.install_all()
else:
self._install_with_depfile()
self.write(regenerate=True)
self.write(regenerate=True)
def update_syspath_and_environ(self) -> None:
"""Update ``sys.path`` and the PATH, PYTHONPATH environment variables to point to
@@ -122,25 +116,6 @@ def update_syspath_and_environ(self) -> None:
+ [str(x) for x in self.pythonpaths()]
)
def _install_with_depfile(self) -> None:
model = depfile.MakefileModel.from_env(self)
template = spack.tengine.make_environment().get_template(
os.path.join("depfile", "Makefile")
)
makefile = self.environment_root() / "Makefile"
makefile.write_text(template.render(model.to_dict()))
make = spack.util.executable.which("make")
kwargs = {}
if not tty.is_debug():
kwargs = {"output": os.devnull, "error": os.devnull}
make(
"-C",
str(self.environment_root()),
"-j",
str(spack.util.cpus.determine_number_of_jobs(parallel=True)),
**kwargs,
)
def _write_spack_yaml_file(self) -> None:
tty.msg(
"[BOOTSTRAPPING] Spack has missing dependencies, creating a bootstrapping environment"
@@ -161,7 +136,7 @@ def _write_spack_yaml_file(self) -> None:
def isort_root_spec() -> str:
"""Return the root spec used to bootstrap isort"""
return _root_spec("py-isort@4.3.5:")
return _root_spec("py-isort@5")
def mypy_root_spec() -> str:

View File

@@ -66,7 +66,6 @@ def _core_requirements() -> List[RequiredResponseType]:
_core_system_exes = {
"make": _missing("make", "required to build software from sources"),
"patch": _missing("patch", "required to patch source code before building"),
"bash": _missing("bash", "required for Spack compiler wrapper"),
"tar": _missing("tar", "required to manage code archives"),
"gzip": _missing("gzip", "required to compress/decompress code archives"),
"unzip": _missing("unzip", "required to compress/decompress code archives"),

View File

@@ -324,19 +324,29 @@ def set_compiler_environment_variables(pkg, env):
# ttyout, ttyerr, etc.
link_dir = spack.paths.build_env_path
# Set SPACK compiler variables so that our wrapper knows what to call
# Set SPACK compiler variables so that our wrapper knows what to
# call. If there is no compiler configured then use a default
# wrapper which will emit an error if it is used.
if compiler.cc:
env.set("SPACK_CC", compiler.cc)
env.set("CC", os.path.join(link_dir, compiler.link_paths["cc"]))
else:
env.set("CC", os.path.join(link_dir, "cc"))
if compiler.cxx:
env.set("SPACK_CXX", compiler.cxx)
env.set("CXX", os.path.join(link_dir, compiler.link_paths["cxx"]))
else:
env.set("CC", os.path.join(link_dir, "c++"))
if compiler.f77:
env.set("SPACK_F77", compiler.f77)
env.set("F77", os.path.join(link_dir, compiler.link_paths["f77"]))
else:
env.set("F77", os.path.join(link_dir, "f77"))
if compiler.fc:
env.set("SPACK_FC", compiler.fc)
env.set("FC", os.path.join(link_dir, compiler.link_paths["fc"]))
else:
env.set("FC", os.path.join(link_dir, "fc"))
# Set SPACK compiler rpath flags so that our wrapper knows what to use
env.set("SPACK_CC_RPATH_ARG", compiler.cc_rpath_arg)
@@ -743,15 +753,16 @@ def setup_package(pkg, dirty, context: Context = Context.BUILD):
set_compiler_environment_variables(pkg, env_mods)
set_wrapper_variables(pkg, env_mods)
tty.debug("setup_package: grabbing modifications from dependencies")
env_mods.extend(setup_context.get_env_modifications())
tty.debug("setup_package: collected all modifications from dependencies")
# architecture specific setup
# Platform specific setup goes before package specific setup. This is for setting
# defaults like MACOSX_DEPLOYMENT_TARGET on macOS.
platform = spack.platforms.by_name(pkg.spec.architecture.platform)
target = platform.target(pkg.spec.architecture.target)
platform.setup_platform_environment(pkg, env_mods)
tty.debug("setup_package: grabbing modifications from dependencies")
env_mods.extend(setup_context.get_env_modifications())
tty.debug("setup_package: collected all modifications from dependencies")
if context == Context.TEST:
env_mods.prepend_path("PATH", ".")
elif context == Context.BUILD and not dirty and not env_mods.is_unset("CPATH"):

View File

@@ -9,6 +9,7 @@
import llnl.util.filesystem as fs
import llnl.util.tty as tty
import spack.build_environment
import spack.builder
from .cmake import CMakeBuilder, CMakePackage
@@ -285,6 +286,19 @@ def initconfig_hardware_entries(self):
def std_initconfig_entries(self):
cmake_prefix_path_env = os.environ["CMAKE_PREFIX_PATH"]
cmake_prefix_path = cmake_prefix_path_env.replace(os.pathsep, ";")
cmake_rpaths_env = spack.build_environment.get_rpaths(self.pkg)
cmake_rpaths_path = ";".join(cmake_rpaths_env)
complete_rpath_list = cmake_rpaths_path
if "SPACK_COMPILER_EXTRA_RPATHS" in os.environ:
spack_extra_rpaths_env = os.environ["SPACK_COMPILER_EXTRA_RPATHS"]
spack_extra_rpaths_path = spack_extra_rpaths_env.replace(os.pathsep, ";")
complete_rpath_list = "{0};{1}".format(complete_rpath_list, spack_extra_rpaths_path)
if "SPACK_COMPILER_IMPLICIT_RPATHS" in os.environ:
spack_implicit_rpaths_env = os.environ["SPACK_COMPILER_IMPLICIT_RPATHS"]
spack_implicit_rpaths_path = spack_implicit_rpaths_env.replace(os.pathsep, ";")
complete_rpath_list = "{0};{1}".format(complete_rpath_list, spack_implicit_rpaths_path)
return [
"#------------------{0}".format("-" * 60),
"# !!!! This is a generated file, edit at own risk !!!!",
@@ -292,6 +306,9 @@ def std_initconfig_entries(self):
"# CMake executable path: {0}".format(self.pkg.spec["cmake"].command.path),
"#------------------{0}\n".format("-" * 60),
cmake_cache_string("CMAKE_PREFIX_PATH", cmake_prefix_path),
cmake_cache_string("CMAKE_INSTALL_RPATH_USE_LINK_PATH", "ON"),
cmake_cache_string("CMAKE_BUILD_RPATH", complete_rpath_list),
cmake_cache_string("CMAKE_INSTALL_RPATH", complete_rpath_list),
self.define_cmake_cache_from_variant("CMAKE_BUILD_TYPE", "build_type"),
]

View File

@@ -0,0 +1,89 @@
# Copyright 2013-2023 Lawrence Livermore National Security, LLC and other
# Spack Project Developers. See the top-level COPYRIGHT file for details.
#
# SPDX-License-Identifier: (Apache-2.0 OR MIT)
import inspect
import llnl.util.filesystem as fs
import spack.builder
import spack.package_base
from spack.directives import build_system, depends_on
from spack.multimethod import when
from ._checks import BaseBuilder, execute_install_time_tests
class CargoPackage(spack.package_base.PackageBase):
"""Specialized class for packages built using a Makefiles."""
#: This attribute is used in UI queries that need to know the build
#: system base class
build_system_class = "CargoPackage"
build_system("cargo")
with when("build_system=cargo"):
depends_on("rust", type="build")
@spack.builder.builder("cargo")
class CargoBuilder(BaseBuilder):
"""The Cargo builder encodes the most common way of building software with
a rust Cargo.toml file. It has two phases that can be overridden, if need be:
1. :py:meth:`~.CargoBuilder.build`
2. :py:meth:`~.CargoBuilder.install`
For a finer tuning you may override:
+-----------------------------------------------+----------------------+
| **Method** | **Purpose** |
+===============================================+======================+
| :py:meth:`~.CargoBuilder.build_args` | Specify arguments |
| | to ``cargo install`` |
+-----------------------------------------------+----------------------+
| :py:meth:`~.CargoBuilder.check_args` | Specify arguments |
| | to ``cargo test`` |
+-----------------------------------------------+----------------------+
"""
phases = ("build", "install")
#: Callback names for install-time test
install_time_test_callbacks = ["check"]
@property
def build_directory(self):
"""Return the directory containing the main Cargo.toml."""
return self.pkg.stage.source_path
@property
def build_args(self):
"""Arguments for ``cargo build``."""
return []
@property
def check_args(self):
"""Argument for ``cargo test`` during check phase"""
return []
def build(self, pkg, spec, prefix):
"""Runs ``cargo install`` in the source directory"""
with fs.working_dir(self.build_directory):
inspect.getmodule(pkg).cargo(
"install", "--root", "out", "--path", ".", *self.build_args
)
def install(self, pkg, spec, prefix):
"""Copy build files into package prefix."""
with fs.working_dir(self.build_directory):
fs.install_tree("out", prefix)
spack.builder.run_after("install")(execute_install_time_tests)
def check(self):
"""Run "cargo test"."""
with fs.working_dir(self.build_directory):
inspect.getmodule(self.pkg).cargo("test", *self.check_args)

View File

@@ -136,12 +136,12 @@ def cuda_flags(arch_list):
conflicts("%gcc@11:", when="+cuda ^cuda@:11.4.0")
conflicts("%gcc@11.2:", when="+cuda ^cuda@:11.5")
conflicts("%gcc@12:", when="+cuda ^cuda@:11.8")
conflicts("%gcc@13:", when="+cuda ^cuda@:12.1")
conflicts("%gcc@13:", when="+cuda ^cuda@:12.3")
conflicts("%clang@12:", when="+cuda ^cuda@:11.4.0")
conflicts("%clang@13:", when="+cuda ^cuda@:11.5")
conflicts("%clang@14:", when="+cuda ^cuda@:11.7")
conflicts("%clang@15:", when="+cuda ^cuda@:12.0")
conflicts("%clang@16:", when="+cuda ^cuda@:12.1")
conflicts("%clang@16:", when="+cuda ^cuda@:12.3")
# https://gist.github.com/ax3l/9489132#gistcomment-3860114
conflicts("%gcc@10", when="+cuda ^cuda@:11.4.0")

View File

@@ -0,0 +1,98 @@
# Copyright 2013-2023 Lawrence Livermore National Security, LLC and other
# Spack Project Developers. See the top-level COPYRIGHT file for details.
#
# SPDX-License-Identifier: (Apache-2.0 OR MIT)
import inspect
import llnl.util.filesystem as fs
import spack.builder
import spack.package_base
from spack.directives import build_system, extends
from spack.multimethod import when
from ._checks import BaseBuilder, execute_install_time_tests
class GoPackage(spack.package_base.PackageBase):
"""Specialized class for packages built using the Go toolchain."""
#: This attribute is used in UI queries that need to know the build
#: system base class
build_system_class = "GoPackage"
#: Legacy buildsystem attribute used to deserialize and install old specs
legacy_buildsystem = "go"
build_system("go")
with when("build_system=go"):
# TODO: this seems like it should be depends_on, see
# setup_dependent_build_environment in go for why I kept it like this
extends("go@1.14:", type="build")
@spack.builder.builder("go")
class GoBuilder(BaseBuilder):
"""The Go builder encodes the most common way of building software with
a golang go.mod file. It has two phases that can be overridden, if need be:
1. :py:meth:`~.GoBuilder.build`
2. :py:meth:`~.GoBuilder.install`
For a finer tuning you may override:
+-----------------------------------------------+--------------------+
| **Method** | **Purpose** |
+===============================================+====================+
| :py:meth:`~.GoBuilder.build_args` | Specify arguments |
| | to ``go build`` |
+-----------------------------------------------+--------------------+
| :py:meth:`~.GoBuilder.check_args` | Specify arguments |
| | to ``go test`` |
+-----------------------------------------------+--------------------+
"""
phases = ("build", "install")
#: Callback names for install-time test
install_time_test_callbacks = ["check"]
def setup_build_environment(self, env):
env.set("GO111MODULE", "on")
env.set("GOTOOLCHAIN", "local")
@property
def build_directory(self):
"""Return the directory containing the main go.mod."""
return self.pkg.stage.source_path
@property
def build_args(self):
"""Arguments for ``go build``."""
# Pass ldflags -s = --strip-all and -w = --no-warnings by default
return ["-ldflags", "-s -w", "-o", f"{self.pkg.name}"]
@property
def check_args(self):
"""Argument for ``go test`` during check phase"""
return []
def build(self, pkg, spec, prefix):
"""Runs ``go build`` in the source directory"""
with fs.working_dir(self.build_directory):
inspect.getmodule(pkg).go("build", *self.build_args)
def install(self, pkg, spec, prefix):
"""Install built binaries into prefix bin."""
with fs.working_dir(self.build_directory):
fs.mkdirp(prefix.bin)
fs.install(pkg.name, prefix.bin)
spack.builder.run_after("install")(execute_install_time_tests)
def check(self):
"""Run ``go test .`` in the source directory"""
with fs.working_dir(self.build_directory):
inspect.getmodule(self.pkg).go("test", *self.check_args)

View File

@@ -7,9 +7,9 @@
import os
import platform
import shutil
from os.path import basename, dirname, isdir
from os.path import basename, isdir
from llnl.util.filesystem import find_headers, find_libraries, join_path, mkdirp
from llnl.util.filesystem import HeaderList, find_libraries, join_path, mkdirp
from llnl.util.link_tree import LinkTree
from spack.directives import conflicts, variant
@@ -55,10 +55,21 @@ def component_dir(self):
"""Subdirectory for this component in the install prefix."""
raise NotImplementedError
@property
def v2_layout_versions(self):
"""Version that implements the v2 directory layout."""
raise NotImplementedError
@property
def v2_layout(self):
"""Returns true if this version implements the v2 directory layout."""
return self.spec.satisfies(self.v2_layout_versions)
@property
def component_prefix(self):
"""Path to component <prefix>/<component>/<version>."""
return self.prefix.join(join_path(self.component_dir, self.spec.version))
v = self.spec.version.up_to(2) if self.v2_layout else self.spec.version
return self.prefix.join(self.component_dir).join(str(v))
@property
def env_script_args(self):
@@ -112,8 +123,9 @@ def install_component(self, installer_path):
shutil.rmtree("/var/intel/installercache", ignore_errors=True)
# Some installers have a bug and do not return an error code when failing
if not isdir(join_path(self.prefix, self.component_dir)):
raise RuntimeError("install failed")
install_dir = self.component_prefix
if not isdir(install_dir):
raise RuntimeError("install failed to directory: {0}".format(install_dir))
def setup_run_environment(self, env):
"""Adds environment variables to the generated module file.
@@ -128,7 +140,7 @@ def setup_run_environment(self, env):
if "~envmods" not in self.spec:
env.extend(
EnvironmentModifications.from_sourcing_file(
join_path(self.component_prefix, "env", "vars.sh"), *self.env_script_args
self.component_prefix.env.join("vars.sh"), *self.env_script_args
)
)
@@ -167,16 +179,40 @@ class IntelOneApiLibraryPackage(IntelOneApiPackage):
"""
def header_directories(self, dirs):
h = HeaderList([])
h.directories = dirs
return h
@property
def headers(self):
include_path = join_path(self.component_prefix, "include")
return find_headers("*", include_path, recursive=True)
return self.header_directories(
[self.component_prefix.include, self.component_prefix.include.join(self.component_dir)]
)
@property
def libs(self):
lib_path = join_path(self.component_prefix, "lib", "intel64")
lib_path = lib_path if isdir(lib_path) else dirname(lib_path)
return find_libraries("*", root=lib_path, shared=True, recursive=True)
# for v2_layout all libraries are in the top level, v1 sometimes put them in intel64
return find_libraries("*", root=self.component_prefix.lib, recursive=not self.v2_layout)
class IntelOneApiLibraryPackageWithSdk(IntelOneApiPackage):
"""Base class for Intel oneAPI library packages with SDK components.
Contains some convenient default implementations for libraries
that expose functionality in sdk subdirectories.
Implement the method directly in the package if something
different is needed.
"""
@property
def headers(self):
return self.header_directories([self.component_prefix.sdk.include])
@property
def libs(self):
return find_libraries("*", self.component_prefix.sdk.lib64)
class IntelOneApiStaticLibraryList:

View File

@@ -6,13 +6,14 @@
import os
import re
import shutil
from typing import Optional
from typing import Iterable, List, Mapping, Optional
import archspec
import llnl.util.filesystem as fs
import llnl.util.lang as lang
import llnl.util.tty as tty
from llnl.util.filesystem import HeaderList, LibraryList
import spack.builder
import spack.config
@@ -25,14 +26,18 @@
from spack.directives import build_system, depends_on, extends, maintainers
from spack.error import NoHeadersError, NoLibrariesError
from spack.install_test import test_part
from spack.spec import Spec
from spack.util.prefix import Prefix
from ._checks import BaseBuilder, execute_install_time_tests
def _flatten_dict(dictionary):
def _flatten_dict(dictionary: Mapping[str, object]) -> Iterable[str]:
"""Iterable that yields KEY=VALUE paths through a dictionary.
Args:
dictionary: Possibly nested dictionary of arbitrary keys and values.
Yields:
A single path through the dictionary.
"""
@@ -50,7 +55,7 @@ class PythonExtension(spack.package_base.PackageBase):
maintainers("adamjstewart")
@property
def import_modules(self):
def import_modules(self) -> Iterable[str]:
"""Names of modules that the Python package provides.
These are used to test whether or not the installation succeeded.
@@ -65,7 +70,7 @@ def import_modules(self):
detected, this property can be overridden by the package.
Returns:
list: list of strings of module names
List of strings of module names.
"""
modules = []
pkg = self.spec["python"].package
@@ -102,14 +107,14 @@ def import_modules(self):
return modules
@property
def skip_modules(self):
def skip_modules(self) -> Iterable[str]:
"""Names of modules that should be skipped when running tests.
These are a subset of import_modules. If a module has submodules,
they are skipped as well (meaning a.b is skipped if a is contained).
Returns:
list: list of strings of module names
List of strings of module names.
"""
return []
@@ -185,12 +190,12 @@ def remove_files_from_view(self, view, merge_map):
view.remove_files(to_remove)
def test_imports(self):
def test_imports(self) -> None:
"""Attempts to import modules of the installed package."""
# Make sure we are importing the installed modules,
# not the ones in the source directory
python = inspect.getmodule(self).python
python = inspect.getmodule(self).python # type: ignore[union-attr]
for module in self.import_modules:
with test_part(
self,
@@ -315,24 +320,27 @@ class PythonPackage(PythonExtension):
py_namespace: Optional[str] = None
@lang.classproperty
def homepage(cls):
def homepage(cls) -> Optional[str]: # type: ignore[override]
if cls.pypi:
name = cls.pypi.split("/")[0]
return "https://pypi.org/project/" + name + "/"
return f"https://pypi.org/project/{name}/"
return None
@lang.classproperty
def url(cls):
def url(cls) -> Optional[str]:
if cls.pypi:
return "https://files.pythonhosted.org/packages/source/" + cls.pypi[0] + "/" + cls.pypi
return f"https://files.pythonhosted.org/packages/source/{cls.pypi[0]}/{cls.pypi}"
return None
@lang.classproperty
def list_url(cls):
def list_url(cls) -> Optional[str]: # type: ignore[override]
if cls.pypi:
name = cls.pypi.split("/")[0]
return "https://pypi.org/simple/" + name + "/"
return f"https://pypi.org/simple/{name}/"
return None
@property
def headers(self):
def headers(self) -> HeaderList:
"""Discover header files in platlib."""
# Remove py- prefix in package name
@@ -350,7 +358,7 @@ def headers(self):
raise NoHeadersError(msg.format(self.spec.name, include, platlib))
@property
def libs(self):
def libs(self) -> LibraryList:
"""Discover libraries in platlib."""
# Remove py- prefix in package name
@@ -384,7 +392,7 @@ class PythonPipBuilder(BaseBuilder):
install_time_test_callbacks = ["test"]
@staticmethod
def std_args(cls):
def std_args(cls) -> List[str]:
return [
# Verbose
"-vvv",
@@ -409,7 +417,7 @@ def std_args(cls):
]
@property
def build_directory(self):
def build_directory(self) -> str:
"""The root directory of the Python package.
This is usually the directory containing one of the following files:
@@ -420,51 +428,51 @@ def build_directory(self):
"""
return self.pkg.stage.source_path
def config_settings(self, spec, prefix):
def config_settings(self, spec: Spec, prefix: Prefix) -> Mapping[str, object]:
"""Configuration settings to be passed to the PEP 517 build backend.
Requires pip 22.1 or newer for keys that appear only a single time,
or pip 23.1 or newer if the same key appears multiple times.
Args:
spec (spack.spec.Spec): build spec
prefix (spack.util.prefix.Prefix): installation prefix
spec: Build spec.
prefix: Installation prefix.
Returns:
dict: Possibly nested dictionary of KEY, VALUE settings
Possibly nested dictionary of KEY, VALUE settings.
"""
return {}
def install_options(self, spec, prefix):
def install_options(self, spec: Spec, prefix: Prefix) -> Iterable[str]:
"""Extra arguments to be supplied to the setup.py install command.
Requires pip 23.0 or older.
Args:
spec (spack.spec.Spec): build spec
prefix (spack.util.prefix.Prefix): installation prefix
spec: Build spec.
prefix: Installation prefix.
Returns:
list: list of options
List of options.
"""
return []
def global_options(self, spec, prefix):
def global_options(self, spec: Spec, prefix: Prefix) -> Iterable[str]:
"""Extra global options to be supplied to the setup.py call before the install
or bdist_wheel command.
Deprecated in pip 23.1.
Args:
spec (spack.spec.Spec): build spec
prefix (spack.util.prefix.Prefix): installation prefix
spec: Build spec.
prefix: Installation prefix.
Returns:
list: list of options
List of options.
"""
return []
def install(self, pkg, spec, prefix):
def install(self, pkg: PythonPackage, spec: Spec, prefix: Prefix) -> None:
"""Install everything from build directory."""
args = PythonPipBuilder.std_args(pkg) + [f"--prefix={prefix}"]

View File

@@ -108,6 +108,8 @@ class ROCmPackage(PackageBase):
"gfx90a:xnack+",
"gfx90c",
"gfx940",
"gfx941",
"gfx942",
"gfx1010",
"gfx1011",
"gfx1012",
@@ -168,6 +170,8 @@ def hip_flags(amdgpu_target):
depends_on("llvm-amdgpu@4.3.0:", when="amdgpu_target=gfx90a:xnack-")
depends_on("llvm-amdgpu@4.3.0:", when="amdgpu_target=gfx90a:xnack+")
depends_on("llvm-amdgpu@5.2.0:", when="amdgpu_target=gfx940")
depends_on("llvm-amdgpu@5.7.0:", when="amdgpu_target=gfx941")
depends_on("llvm-amdgpu@5.7.0:", when="amdgpu_target=gfx942")
depends_on("llvm-amdgpu@4.5.0:", when="amdgpu_target=gfx1013")
depends_on("llvm-amdgpu@3.8.0:", when="amdgpu_target=gfx1030")
depends_on("llvm-amdgpu@3.9.0:", when="amdgpu_target=gfx1031")

View File

@@ -6,10 +6,8 @@
import argparse
import os
import re
import shlex
import sys
from textwrap import dedent
from typing import List, Match, Tuple
from typing import List, Union
import llnl.string
import llnl.util.tty as tty
@@ -147,89 +145,37 @@ def get_command(cmd_name):
return getattr(get_module(cmd_name), pname)
class _UnquotedFlags:
"""Use a heuristic in `.extract()` to detect whether the user is trying to set
multiple flags like the docker ENV attribute allows (e.g. 'cflags=-Os -pipe').
def quote_kvp(string: str) -> str:
"""For strings like ``name=value`` or ``name==value``, quote and escape the value if needed.
If the heuristic finds a match (which can be checked with `__bool__()`), a warning
message explaining how to quote multiple flags correctly can be generated with
`.report()`.
This is a compromise to respect quoting of key-value pairs on the CLI. The shell
strips quotes from quoted arguments, so we cannot know *exactly* how CLI arguments
were quoted. To compensate, we re-add quotes around anything staritng with ``name=``
or ``name==``, and we assume the rest of the argument is the value. This covers the
common cases of passign flags, e.g., ``cflags="-O2 -g"`` on the command line.
"""
match = re.match(spack.parser.SPLIT_KVP, string)
if not match:
return string
flags_arg_pattern = re.compile(
r'^({0})=([^\'"].*)$'.format("|".join(spack.spec.FlagMap.valid_compiler_flags()))
)
def __init__(self, all_unquoted_flag_pairs: List[Tuple[Match[str], str]]):
self._flag_pairs = all_unquoted_flag_pairs
def __bool__(self) -> bool:
return bool(self._flag_pairs)
@classmethod
def extract(cls, sargs: str) -> "_UnquotedFlags":
all_unquoted_flag_pairs: List[Tuple[Match[str], str]] = []
prev_flags_arg = None
for arg in shlex.split(sargs):
if prev_flags_arg is not None:
all_unquoted_flag_pairs.append((prev_flags_arg, arg))
prev_flags_arg = cls.flags_arg_pattern.match(arg)
return cls(all_unquoted_flag_pairs)
def report(self) -> str:
single_errors = [
"({0}) {1} {2} => {3}".format(
i + 1,
match.group(0),
next_arg,
'{0}="{1} {2}"'.format(match.group(1), match.group(2), next_arg),
)
for i, (match, next_arg) in enumerate(self._flag_pairs)
]
return dedent(
"""\
Some compiler or linker flags were provided without quoting their arguments,
which now causes spack to try to parse the *next* argument as a spec component
such as a variant instead of an additional compiler or linker flag. If the
intent was to set multiple flags, try quoting them together as described below.
Possible flag quotation errors (with the correctly-quoted version after the =>):
{0}"""
).format("\n".join(single_errors))
key, delim, value = match.groups()
return f"{key}{delim}{spack.parser.quote_if_needed(value)}"
def parse_specs(args, **kwargs):
def parse_specs(
args: Union[str, List[str]], concretize: bool = False, tests: bool = False
) -> List[spack.spec.Spec]:
"""Convenience function for parsing arguments from specs. Handles common
exceptions and dies if there are errors.
"""
concretize = kwargs.get("concretize", False)
normalize = kwargs.get("normalize", False)
tests = kwargs.get("tests", False)
args = [args] if isinstance(args, str) else args
arg_string = " ".join([quote_kvp(arg) for arg in args])
sargs = args
if not isinstance(args, str):
sargs = " ".join(args)
unquoted_flags = _UnquotedFlags.extract(sargs)
try:
specs = spack.parser.parse(sargs)
for spec in specs:
if concretize:
spec.concretize(tests=tests) # implies normalize
elif normalize:
spec.normalize(tests=tests)
return specs
except spack.error.SpecError as e:
msg = e.message
if e.long_message:
msg += e.long_message
# Unquoted flags will be read as a variant or hash
if unquoted_flags and ("variant" in msg or "hash" in msg):
msg += "\n\n"
msg += unquoted_flags.report()
raise spack.error.SpackError(msg) from e
specs = spack.parser.parse(arg_string)
for spec in specs:
if concretize:
spec.concretize(tests=tests)
return specs
def matching_spec_from_env(spec):

View File

@@ -6,7 +6,7 @@
import llnl.util.tty as tty
import spack.cmd
import spack.cmd.common.arguments as arguments
from spack.cmd.common import arguments
description = "add a spec to an environment"
section = "environments"

View File

@@ -15,13 +15,13 @@
import spack.bootstrap
import spack.bootstrap.config
import spack.bootstrap.core
import spack.cmd.common.arguments
import spack.config
import spack.main
import spack.mirror
import spack.spec
import spack.stage
import spack.util.path
from spack.cmd.common import arguments
description = "manage bootstrap configuration"
section = "system"
@@ -68,12 +68,8 @@
def _add_scope_option(parser):
scopes = spack.config.scopes()
parser.add_argument(
"--scope",
choices=scopes,
metavar=spack.config.SCOPES_METAVAR,
help="configuration scope to read/modify",
"--scope", action=arguments.ConfigScope, help="configuration scope to read/modify"
)
@@ -106,7 +102,7 @@ def setup_parser(subparser):
disable.add_argument("name", help="name of the source to be disabled", nargs="?", default=None)
reset = sp.add_parser("reset", help="reset bootstrapping configuration to Spack defaults")
spack.cmd.common.arguments.add_common_arguments(reset, ["yes_to_all"])
arguments.add_common_arguments(reset, ["yes_to_all"])
root = sp.add_parser("root", help="get/set the root bootstrap directory")
_add_scope_option(root)

View File

@@ -21,7 +21,6 @@
import spack.binary_distribution as bindist
import spack.cmd
import spack.cmd.common.arguments as arguments
import spack.config
import spack.environment as ev
import spack.error
@@ -40,6 +39,7 @@
import spack.util.web as web_util
from spack.build_environment import determine_number_of_jobs
from spack.cmd import display_specs
from spack.cmd.common import arguments
from spack.oci.image import (
Digest,
ImageReference,
@@ -76,7 +76,19 @@ def setup_parser(subparser: argparse.ArgumentParser):
)
push_sign = push.add_mutually_exclusive_group(required=False)
push_sign.add_argument(
"--unsigned", "-u", action="store_true", help="push unsigned buildcache tarballs"
"--unsigned",
"-u",
action="store_false",
dest="signed",
default=None,
help="push unsigned buildcache tarballs",
)
push_sign.add_argument(
"--signed",
action="store_true",
dest="signed",
default=None,
help="push signed buildcache tarballs",
)
push_sign.add_argument(
"--key", "-k", metavar="key", type=str, default=None, help="key for signing"
@@ -182,23 +194,22 @@ def setup_parser(subparser: argparse.ArgumentParser):
)
# used to construct scope arguments below
scopes = spack.config.scopes()
check.add_argument(
"--scope",
choices=scopes,
metavar=spack.config.SCOPES_METAVAR,
default=spack.config.default_modify_scope(),
action=arguments.ConfigScope,
default=lambda: spack.config.default_modify_scope(),
help="configuration scope containing mirrors to check",
)
check_spec_or_specfile = check.add_mutually_exclusive_group(required=True)
check_spec_or_specfile.add_argument(
# Unfortunately there are 3 ways to do the same thing here:
check_specs = check.add_mutually_exclusive_group()
check_specs.add_argument(
"-s", "--spec", help="check single spec instead of release specs file"
)
check_spec_or_specfile.add_argument(
check_specs.add_argument(
"--spec-file",
help="check single spec from json or yaml file instead of release specs file",
)
arguments.add_common_arguments(check, ["specs"])
check.set_defaults(func=check_fn)
@@ -329,17 +340,27 @@ def push_fn(args):
"The flag `--allow-root` is the default in Spack 0.21, will be removed in Spack 0.22"
)
mirror: spack.mirror.Mirror = args.mirror
# Check if this is an OCI image.
try:
image_ref = spack.oci.oci.image_from_mirror(args.mirror)
image_ref = spack.oci.oci.image_from_mirror(mirror)
except ValueError:
image_ref = None
push_url = mirror.push_url
# When neither --signed, --unsigned nor --key are specified, use the mirror's default.
if args.signed is None and not args.key:
unsigned = not mirror.signed
else:
unsigned = not (args.key or args.signed)
# For OCI images, we require dependencies to be pushed for now.
if image_ref:
if "dependencies" not in args.things_to_install:
tty.die("Dependencies must be pushed for OCI images.")
if not args.unsigned:
if not unsigned:
tty.warn(
"Code signing is currently not supported for OCI images. "
"Use --unsigned to silence this warning."
@@ -352,12 +373,10 @@ def push_fn(args):
dependencies="dependencies" in args.things_to_install,
)
url = args.mirror.push_url
# When pushing multiple specs, print the url once ahead of time, as well as how
# many specs are being pushed.
if len(specs) > 1:
tty.info(f"Selected {len(specs)} specs to push to {url}")
tty.info(f"Selected {len(specs)} specs to push to {push_url}")
failed = []
@@ -374,10 +393,10 @@ def push_fn(args):
try:
bindist.push_or_raise(
spec,
url,
push_url,
bindist.PushOptions(
force=args.force,
unsigned=args.unsigned,
unsigned=unsigned,
key=args.key,
regenerate_index=args.update_index,
),
@@ -385,7 +404,7 @@ def push_fn(args):
msg = f"{_progress(i, len(specs))}Pushed {_format_spec(spec)}"
if len(specs) == 1:
msg += f" to {url}"
msg += f" to {push_url}"
tty.info(msg)
except bindist.NoOverwriteException:
@@ -816,15 +835,24 @@ def check_fn(args: argparse.Namespace):
exit code is non-zero, then at least one of the indicated specs needs to be rebuilt
"""
if args.spec_file:
specs_arg = (
args.spec_file if os.path.sep in args.spec_file else os.path.join(".", args.spec_file)
)
tty.warn(
"The flag `--spec-file` is deprecated and will be removed in Spack 0.22. "
"Use --spec instead."
f"Use `spack buildcache check {specs_arg}` instead."
)
elif args.spec:
specs_arg = args.spec
tty.warn(
"The flag `--spec` is deprecated and will be removed in Spack 0.23. "
f"Use `spack buildcache check {specs_arg}` instead."
)
else:
specs_arg = args.specs
specs = spack.cmd.parse_specs(args.spec or args.spec_file)
if specs:
specs = _matching_specs(specs)
if specs_arg:
specs = _matching_specs(spack.cmd.parse_specs(specs_arg))
else:
specs = spack.cmd.require_active_env("buildcache check").all_specs()

View File

@@ -4,7 +4,7 @@
# SPDX-License-Identifier: (Apache-2.0 OR MIT)
import spack.cmd
import spack.cmd.common.arguments as arguments
from spack.cmd.common import arguments
description = "change an existing spec in an environment"
section = "environments"

View File

@@ -16,6 +16,7 @@
import spack.cmd.buildcache as buildcache
import spack.config as cfg
import spack.environment as ev
import spack.environment.depfile
import spack.hash_types as ht
import spack.mirror
import spack.util.gpg as gpg_util
@@ -606,7 +607,9 @@ def ci_rebuild(args):
"SPACK_INSTALL_FLAGS={}".format(args_to_string(deps_install_args)),
"-j$(nproc)",
"install-deps/{}".format(
ev.depfile.MakefileSpec(job_spec).safe_format("{name}-{version}-{hash}")
spack.environment.depfile.MakefileSpec(job_spec).safe_format(
"{name}-{version}-{hash}"
)
),
],
spack_cmd + ["install"] + root_install_args,

View File

@@ -12,13 +12,13 @@
import spack.bootstrap
import spack.caches
import spack.cmd.common.arguments as arguments
import spack.cmd.test
import spack.config
import spack.repo
import spack.stage
import spack.store
import spack.util.path
from spack.cmd.common import arguments
from spack.paths import lib_path, var_path
description = "remove temporary build files and/or downloaded archives"

View File

@@ -124,6 +124,33 @@ def __call__(self, parser, namespace, values, option_string=None):
setattr(namespace, self.dest, deptype)
class ConfigScope(argparse.Action):
"""Pick the currently configured config scopes."""
def __init__(self, *args, **kwargs) -> None:
kwargs.setdefault("metavar", spack.config.SCOPES_METAVAR)
super().__init__(*args, **kwargs)
@property
def default(self):
return self._default() if callable(self._default) else self._default
@default.setter
def default(self, value):
self._default = value
@property
def choices(self):
return spack.config.scopes().keys()
@choices.setter
def choices(self, value):
pass
def __call__(self, parser, namespace, values, option_string=None):
setattr(namespace, self.dest, values)
def _cdash_reporter(namespace):
"""Helper function to create a CDash reporter. This function gets an early reference to the
argparse namespace under construction, so it can later use it to create the object.
@@ -357,10 +384,11 @@ def install_status():
"--install-status",
action="store_true",
default=True,
help="show install status of packages\n\npackages can be: "
"installed [+], missing and needed by an installed package [-], "
"installed in an upstream instance [^], "
"or not installed (no annotation)",
help=(
"show install status of packages\n"
"[+] installed [^] installed in an upstream\n"
" - not installed [-] missing dep of installed package\n"
),
)

View File

@@ -8,13 +8,13 @@
import llnl.util.tty as tty
import spack.cmd
import spack.cmd.common.arguments as arguments
import spack.deptypes as dt
import spack.error
import spack.paths
import spack.spec
import spack.store
from spack import build_environment, traverse
from spack.cmd.common import arguments
from spack.context import Context
from spack.util.environment import dump_environment, pickle_environment

View File

@@ -14,6 +14,7 @@
import spack.compilers
import spack.config
import spack.spec
from spack.cmd.common import arguments
description = "manage compilers"
section = "system"
@@ -23,8 +24,6 @@
def setup_parser(subparser):
sp = subparser.add_subparsers(metavar="SUBCOMMAND", dest="compiler_command")
scopes = spack.config.scopes()
# Find
find_parser = sp.add_parser(
"find",
@@ -47,9 +46,8 @@ def setup_parser(subparser):
find_parser.add_argument("add_paths", nargs=argparse.REMAINDER)
find_parser.add_argument(
"--scope",
choices=scopes,
metavar=spack.config.SCOPES_METAVAR,
default=spack.config.default_modify_scope("compilers"),
action=arguments.ConfigScope,
default=lambda: spack.config.default_modify_scope("compilers"),
help="configuration scope to modify",
)
@@ -60,20 +58,15 @@ def setup_parser(subparser):
)
remove_parser.add_argument("compiler_spec")
remove_parser.add_argument(
"--scope",
choices=scopes,
metavar=spack.config.SCOPES_METAVAR,
default=None,
help="configuration scope to modify",
"--scope", action=arguments.ConfigScope, default=None, help="configuration scope to modify"
)
# List
list_parser = sp.add_parser("list", help="list available compilers")
list_parser.add_argument(
"--scope",
choices=scopes,
metavar=spack.config.SCOPES_METAVAR,
default=spack.config.default_list_scope(),
action=arguments.ConfigScope,
default=lambda: spack.config.default_list_scope(),
help="configuration scope to read from",
)
@@ -82,9 +75,8 @@ def setup_parser(subparser):
info_parser.add_argument("compiler_spec")
info_parser.add_argument(
"--scope",
choices=scopes,
metavar=spack.config.SCOPES_METAVAR,
default=spack.config.default_list_scope(),
action=arguments.ConfigScope,
default=lambda: spack.config.default_list_scope(),
help="configuration scope to read from",
)

View File

@@ -3,7 +3,7 @@
#
# SPDX-License-Identifier: (Apache-2.0 OR MIT)
import spack.config
from spack.cmd.common import arguments
from spack.cmd.compiler import compiler_list
description = "list available compilers"
@@ -12,13 +12,8 @@
def setup_parser(subparser):
scopes = spack.config.scopes()
subparser.add_argument(
"--scope",
choices=scopes,
metavar=spack.config.SCOPES_METAVAR,
help="configuration scope to read/modify",
"--scope", action=arguments.ConfigScope, help="configuration scope to read/modify"
)

View File

@@ -10,7 +10,6 @@
import llnl.util.filesystem as fs
import llnl.util.tty as tty
import spack.cmd.common.arguments
import spack.config
import spack.environment as ev
import spack.repo
@@ -18,6 +17,7 @@
import spack.schema.packages
import spack.store
import spack.util.spack_yaml as syaml
from spack.cmd.common import arguments
from spack.util.editor import editor
description = "get and set configuration options"
@@ -26,14 +26,9 @@
def setup_parser(subparser):
scopes = spack.config.scopes()
# User can only choose one
subparser.add_argument(
"--scope",
choices=scopes,
metavar=spack.config.SCOPES_METAVAR,
help="configuration scope to read/modify",
"--scope", action=arguments.ConfigScope, help="configuration scope to read/modify"
)
sp = subparser.add_subparsers(metavar="SUBCOMMAND", dest="config_command")
@@ -101,13 +96,13 @@ def setup_parser(subparser):
setup_parser.add_parser = add_parser
update = sp.add_parser("update", help="update configuration files to the latest format")
spack.cmd.common.arguments.add_common_arguments(update, ["yes_to_all"])
arguments.add_common_arguments(update, ["yes_to_all"])
update.add_argument("section", help="section to update")
revert = sp.add_parser(
"revert", help="revert configuration files to their state before update"
)
spack.cmd.common.arguments.add_common_arguments(revert, ["yes_to_all"])
arguments.add_common_arguments(revert, ["yes_to_all"])
revert.add_argument("section", help="section to update")

View File

@@ -172,6 +172,14 @@ def configure_args(self):
return args"""
class CargoPackageTemplate(PackageTemplate):
"""Provides appropriate overrides for cargo-based packages"""
base_class_name = "CargoPackage"
body_def = ""
class CMakePackageTemplate(PackageTemplate):
"""Provides appropriate overrides for CMake-based packages"""
@@ -186,6 +194,14 @@ def cmake_args(self):
return args"""
class GoPackageTemplate(PackageTemplate):
"""Provides appropriate overrides for Go-module-based packages"""
base_class_name = "GoPackage"
body_def = ""
class LuaPackageTemplate(PackageTemplate):
"""Provides appropriate overrides for LuaRocks-based packages"""
@@ -575,28 +591,30 @@ def __init__(self, name, *args, **kwargs):
templates = {
"autotools": AutotoolsPackageTemplate,
"autoreconf": AutoreconfPackageTemplate,
"cmake": CMakePackageTemplate,
"bundle": BundlePackageTemplate,
"qmake": QMakePackageTemplate,
"maven": MavenPackageTemplate,
"scons": SconsPackageTemplate,
"waf": WafPackageTemplate,
"autotools": AutotoolsPackageTemplate,
"bazel": BazelPackageTemplate,
"bundle": BundlePackageTemplate,
"cargo": CargoPackageTemplate,
"cmake": CMakePackageTemplate,
"generic": PackageTemplate,
"go": GoPackageTemplate,
"intel": IntelPackageTemplate,
"lua": LuaPackageTemplate,
"makefile": MakefilePackageTemplate,
"maven": MavenPackageTemplate,
"meson": MesonPackageTemplate,
"octave": OctavePackageTemplate,
"perlbuild": PerlbuildPackageTemplate,
"perlmake": PerlmakePackageTemplate,
"python": PythonPackageTemplate,
"qmake": QMakePackageTemplate,
"r": RPackageTemplate,
"racket": RacketPackageTemplate,
"perlmake": PerlmakePackageTemplate,
"perlbuild": PerlbuildPackageTemplate,
"octave": OctavePackageTemplate,
"ruby": RubyPackageTemplate,
"makefile": MakefilePackageTemplate,
"intel": IntelPackageTemplate,
"meson": MesonPackageTemplate,
"lua": LuaPackageTemplate,
"scons": SconsPackageTemplate,
"sip": SIPPackageTemplate,
"generic": PackageTemplate,
"waf": WafPackageTemplate,
}
@@ -679,6 +697,8 @@ def __call__(self, stage, url):
clues = [
(r"/CMakeLists\.txt$", "cmake"),
(r"/NAMESPACE$", "r"),
(r"/Cargo\.toml$", "cargo"),
(r"/go\.mod$", "go"),
(r"/configure$", "autotools"),
(r"/configure\.(in|ac)$", "autoreconf"),
(r"/Makefile\.am$", "autoreconf"),

View File

@@ -10,10 +10,10 @@
import llnl.util.tty as tty
import spack.cmd
import spack.cmd.common.arguments as arguments
import spack.cmd.common.confirmation as confirmation
import spack.environment as ev
import spack.spec
from spack.cmd.common import arguments
description = "remove specs from the concretized lockfile of an environment"
section = "environments"

View File

@@ -9,11 +9,11 @@
from llnl.util.tty.colify import colify
import spack.cmd
import spack.cmd.common.arguments as arguments
import spack.environment as ev
import spack.package_base
import spack.repo
import spack.store
from spack.cmd.common import arguments
description = "show dependencies of a package"
section = "basic"

View File

@@ -9,10 +9,10 @@
from llnl.util.tty.colify import colify
import spack.cmd
import spack.cmd.common.arguments as arguments
import spack.environment as ev
import spack.repo
import spack.store
from spack.cmd.common import arguments
description = "show packages that depend on another"
section = "basic"

View File

@@ -20,9 +20,9 @@
from llnl.util.symlink import symlink
import spack.cmd
import spack.cmd.common.arguments as arguments
import spack.environment as ev
import spack.store
from spack.cmd.common import arguments
from spack.database import InstallStatuses
from spack.error import SpackError

View File

@@ -9,9 +9,9 @@
import llnl.util.tty as tty
import spack.cmd
import spack.cmd.common.arguments as arguments
import spack.config
import spack.repo
from spack.cmd.common import arguments
description = "developer build: build from code in current working directory"
section = "build"

View File

@@ -8,10 +8,10 @@
import llnl.util.tty as tty
import spack.cmd
import spack.cmd.common.arguments as arguments
import spack.spec
import spack.util.path
import spack.version
from spack.cmd.common import arguments
from spack.error import SpackError
description = "add a spec to an environment's dev-build information"

View File

@@ -10,11 +10,11 @@
from llnl.util.tty.color import cprint, get_color_when
import spack.cmd
import spack.cmd.common.arguments as arguments
import spack.environment as ev
import spack.solver.asp as asp
import spack.util.environment
import spack.util.spack_json as sjson
from spack.cmd.common import arguments
description = "compare two specs"
section = "basic"

View File

@@ -20,7 +20,6 @@
import spack.cmd
import spack.cmd.common
import spack.cmd.common.arguments
import spack.cmd.common.arguments as arguments
import spack.cmd.install
import spack.cmd.modules
import spack.cmd.uninstall
@@ -31,6 +30,7 @@
import spack.schema.env
import spack.spec
import spack.tengine
from spack.cmd.common import arguments
from spack.util.environment import EnvironmentModifications
description = "manage virtual environments"

View File

@@ -10,10 +10,10 @@
from llnl.util.tty.colify import colify
import spack.cmd as cmd
import spack.cmd.common.arguments as arguments
import spack.environment as ev
import spack.repo
import spack.store
from spack.cmd.common import arguments
description = "list extensions for package"
section = "extensions"

View File

@@ -14,12 +14,12 @@
import spack
import spack.cmd
import spack.cmd.common.arguments
import spack.config
import spack.cray_manifest as cray_manifest
import spack.detection
import spack.error
import spack.util.environment
from spack.cmd.common import arguments
description = "manage external packages in Spack configuration"
section = "config"
@@ -29,8 +29,6 @@
def setup_parser(subparser):
sp = subparser.add_subparsers(metavar="SUBCOMMAND", dest="external_command")
scopes = spack.config.scopes()
find_parser = sp.add_parser("find", help="add external packages to packages.yaml")
find_parser.add_argument(
"--not-buildable",
@@ -48,15 +46,14 @@ def setup_parser(subparser):
)
find_parser.add_argument(
"--scope",
choices=scopes,
metavar=spack.config.SCOPES_METAVAR,
default=spack.config.default_modify_scope("packages"),
action=arguments.ConfigScope,
default=lambda: spack.config.default_modify_scope("packages"),
help="configuration scope to modify",
)
find_parser.add_argument(
"--all", action="store_true", help="search for all packages that Spack knows about"
)
spack.cmd.common.arguments.add_common_arguments(find_parser, ["tags", "jobs"])
arguments.add_common_arguments(find_parser, ["tags", "jobs"])
find_parser.add_argument("packages", nargs=argparse.REMAINDER)
find_parser.epilog = (
'The search is by default on packages tagged with the "build-tools" or '

View File

@@ -6,11 +6,11 @@
import llnl.util.tty as tty
import spack.cmd
import spack.cmd.common.arguments as arguments
import spack.config
import spack.environment as ev
import spack.repo
import spack.traverse
from spack.cmd.common import arguments
description = "fetch archives for packages"
section = "build"

View File

@@ -12,9 +12,9 @@
import spack.bootstrap
import spack.cmd as cmd
import spack.cmd.common.arguments as arguments
import spack.environment as ev
import spack.repo
from spack.cmd.common import arguments
from spack.database import InstallStatuses
description = "list and search installed packages"

View File

@@ -7,11 +7,11 @@
import os
import spack.binary_distribution
import spack.cmd.common.arguments as arguments
import spack.mirror
import spack.paths
import spack.util.gpg
import spack.util.url
from spack.cmd.common import arguments
description = "handle GPG actions for spack"
section = "packaging"

View File

@@ -5,10 +5,10 @@
from llnl.util import tty
import spack.cmd
import spack.cmd.common.arguments as arguments
import spack.config
import spack.environment as ev
import spack.store
from spack.cmd.common import arguments
from spack.graph import DAGWithDependencyTypes, SimpleDAG, graph_ascii, graph_dot, static_graph_dot
description = "generate graphs of package dependency relationships"
@@ -61,7 +61,7 @@ def graph(parser, args):
args.dot = True
env = ev.active_environment()
if env:
specs = env.all_specs()
specs = env.concrete_roots()
else:
specs = spack.store.STORE.db.query()

View File

@@ -11,13 +11,13 @@
import llnl.util.tty.color as color
from llnl.util.tty.colify import colify
import spack.cmd.common.arguments as arguments
import spack.deptypes as dt
import spack.fetch_strategy as fs
import spack.install_test
import spack.repo
import spack.spec
import spack.version
from spack.cmd.common import arguments
from spack.package_base import preferred_version
description = "get detailed information on a particular package"
@@ -327,7 +327,7 @@ def _variants_by_name_when(pkg):
"""Adaptor to get variants keyed by { name: { when: { [Variant...] } }."""
# TODO: replace with pkg.variants_by_name(when=True) when unified directive dicts are merged.
variants = {}
for name, (variant, whens) in pkg.variants.items():
for name, (variant, whens) in sorted(pkg.variants.items()):
for when in whens:
variants.setdefault(name, {}).setdefault(when, []).append(variant)
return variants

View File

@@ -14,7 +14,6 @@
import spack.build_environment
import spack.cmd
import spack.cmd.common.arguments as arguments
import spack.config
import spack.environment as ev
import spack.fetch_strategy
@@ -23,6 +22,7 @@
import spack.report
import spack.spec
import spack.store
from spack.cmd.common import arguments
from spack.error import SpackError
from spack.installer import PackageInstaller
@@ -162,8 +162,8 @@ def setup_parser(subparser):
"--no-check-signature",
action="store_true",
dest="unsigned",
default=False,
help="do not check signatures of binary packages",
default=None,
help="do not check signatures of binary packages (override mirror config)",
)
subparser.add_argument(
"--show-log-on-error",

View File

@@ -15,9 +15,9 @@
import llnl.util.tty as tty
from llnl.util.tty.colify import colify
import spack.cmd.common.arguments as arguments
import spack.deptypes as dt
import spack.repo
from spack.cmd.common import arguments
from spack.version import VersionList
description = "list and search available packages"

View File

@@ -8,12 +8,12 @@
import llnl.util.tty as tty
import spack.cmd
import spack.cmd.common.arguments as arguments
import spack.cmd.find
import spack.environment as ev
import spack.store
import spack.user_environment as uenv
import spack.util.environment
from spack.cmd.common import arguments
description = "add package to the user environment"
section = "user environment"

View File

@@ -9,11 +9,11 @@
import spack.builder
import spack.cmd
import spack.cmd.common.arguments as arguments
import spack.environment as ev
import spack.paths
import spack.repo
import spack.stage
from spack.cmd.common import arguments
description = "print out locations of packages and spack directories"
section = "basic"

View File

@@ -8,11 +8,11 @@
from llnl.util import tty
import spack.cmd
import spack.cmd.common.arguments as arguments
import spack.error
import spack.package_base
import spack.repo
import spack.store
from spack.cmd.common import arguments
from spack.database import InstallStatuses
description = "mark packages as explicitly or implicitly installed"

View File

@@ -11,7 +11,6 @@
import spack.caches
import spack.cmd
import spack.cmd.common.arguments as arguments
import spack.concretize
import spack.config
import spack.environment as ev
@@ -20,6 +19,7 @@
import spack.spec
import spack.util.path
import spack.util.web as web_util
from spack.cmd.common import arguments
from spack.error import SpackError
description = "manage mirrors (source and binary)"
@@ -88,18 +88,14 @@ def setup_parser(subparser):
"--mirror-url", metavar="mirror_url", type=str, help="find mirror to destroy by url"
)
# used to construct scope arguments below
scopes = spack.config.scopes()
# Add
add_parser = sp.add_parser("add", help=mirror_add.__doc__)
add_parser.add_argument("name", help="mnemonic name for mirror", metavar="mirror")
add_parser.add_argument("url", help="url of mirror directory from 'spack mirror create'")
add_parser.add_argument(
"--scope",
choices=scopes,
metavar=spack.config.SCOPES_METAVAR,
default=spack.config.default_modify_scope(),
action=arguments.ConfigScope,
default=lambda: spack.config.default_modify_scope(),
help="configuration scope to modify",
)
add_parser.add_argument(
@@ -111,15 +107,31 @@ def setup_parser(subparser):
"and source use `--type binary --type source` (default)"
),
)
add_parser_signed = add_parser.add_mutually_exclusive_group(required=False)
add_parser_signed.add_argument(
"--unsigned",
help="do not require signing and signature verification when pushing and installing from "
"this build cache",
action="store_false",
default=None,
dest="signed",
)
add_parser_signed.add_argument(
"--signed",
help="require signing and signature verification when pushing and installing from this "
"build cache",
action="store_true",
default=None,
dest="signed",
)
arguments.add_connection_args(add_parser, False)
# Remove
remove_parser = sp.add_parser("remove", aliases=["rm"], help=mirror_remove.__doc__)
remove_parser.add_argument("name", help="mnemonic name for mirror", metavar="mirror")
remove_parser.add_argument(
"--scope",
choices=scopes,
metavar=spack.config.SCOPES_METAVAR,
default=spack.config.default_modify_scope(),
action=arguments.ConfigScope,
default=lambda: spack.config.default_modify_scope(),
help="configuration scope to modify",
)
@@ -136,9 +148,8 @@ def setup_parser(subparser):
)
set_url_parser.add_argument(
"--scope",
choices=scopes,
metavar=spack.config.SCOPES_METAVAR,
default=spack.config.default_modify_scope(),
action=arguments.ConfigScope,
default=lambda: spack.config.default_modify_scope(),
help="configuration scope to modify",
)
arguments.add_connection_args(set_url_parser, False)
@@ -163,11 +174,27 @@ def setup_parser(subparser):
),
)
set_parser.add_argument("--url", help="url of mirror directory from 'spack mirror create'")
set_parser_unsigned = set_parser.add_mutually_exclusive_group(required=False)
set_parser_unsigned.add_argument(
"--unsigned",
help="do not require signing and signature verification when pushing and installing from "
"this build cache",
action="store_false",
default=None,
dest="signed",
)
set_parser_unsigned.add_argument(
"--signed",
help="require signing and signature verification when pushing and installing from this "
"build cache",
action="store_true",
default=None,
dest="signed",
)
set_parser.add_argument(
"--scope",
choices=scopes,
metavar=spack.config.SCOPES_METAVAR,
default=spack.config.default_modify_scope(),
action=arguments.ConfigScope,
default=lambda: spack.config.default_modify_scope(),
help="configuration scope to modify",
)
arguments.add_connection_args(set_parser, False)
@@ -176,9 +203,8 @@ def setup_parser(subparser):
list_parser = sp.add_parser("list", help=mirror_list.__doc__)
list_parser.add_argument(
"--scope",
choices=scopes,
metavar=spack.config.SCOPES_METAVAR,
default=spack.config.default_list_scope(),
action=arguments.ConfigScope,
default=lambda: spack.config.default_list_scope(),
help="configuration scope to read from",
)
@@ -194,6 +220,7 @@ def mirror_add(args):
or args.type
or args.oci_username
or args.oci_password
or args.signed is not None
):
connection = {"url": args.url}
if args.s3_access_key_id and args.s3_access_key_secret:
@@ -209,6 +236,8 @@ def mirror_add(args):
if args.type:
connection["binary"] = "binary" in args.type
connection["source"] = "source" in args.type
if args.signed is not None:
connection["signed"] = args.signed
mirror = spack.mirror.Mirror(connection, name=args.name)
else:
mirror = spack.mirror.Mirror(args.url, name=args.name)
@@ -241,6 +270,8 @@ def _configure_mirror(args):
changes["endpoint_url"] = args.s3_endpoint_url
if args.oci_username and args.oci_password:
changes["access_pair"] = [args.oci_username, args.oci_password]
if getattr(args, "signed", None) is not None:
changes["signed"] = args.signed
# argparse cannot distinguish between --binary and --no-binary when same dest :(
# notice that set-url does not have these args, so getattr

View File

@@ -14,11 +14,11 @@
from llnl.util.tty import color
import spack.cmd
import spack.cmd.common.arguments as arguments
import spack.config
import spack.modules
import spack.modules.common
import spack.repo
from spack.cmd.common import arguments
description = "manipulate module files"
section = "environment"

View File

@@ -6,12 +6,12 @@
import llnl.util.tty as tty
import spack.cmd
import spack.cmd.common.arguments as arguments
import spack.config
import spack.environment as ev
import spack.package_base
import spack.repo
import spack.traverse
from spack.cmd.common import arguments
description = "patch expanded archive sources in preparation for install"
section = "build"

View File

@@ -12,11 +12,11 @@
from llnl.util.tty.colify import colify
import spack.cmd
import spack.cmd.common.arguments as arguments
import spack.paths
import spack.repo
import spack.util.executable as exe
import spack.util.package_hash as ph
from spack.cmd.common import arguments
description = "query packages associated with particular git revisions"
section = "developer"

View File

@@ -6,7 +6,7 @@
import llnl.util.tty as tty
import spack.cmd
import spack.cmd.common.arguments as arguments
from spack.cmd.common import arguments
description = "remove specs from an environment"
section = "environments"

View File

@@ -11,6 +11,7 @@
import spack.config
import spack.repo
import spack.util.path
from spack.cmd.common import arguments
description = "manage package source repositories"
section = "config"
@@ -19,7 +20,6 @@
def setup_parser(subparser):
sp = subparser.add_subparsers(metavar="SUBCOMMAND", dest="repo_command")
scopes = spack.config.scopes()
# Create
create_parser = sp.add_parser("create", help=repo_create.__doc__)
@@ -43,9 +43,8 @@ def setup_parser(subparser):
list_parser = sp.add_parser("list", help=repo_list.__doc__)
list_parser.add_argument(
"--scope",
choices=scopes,
metavar=spack.config.SCOPES_METAVAR,
default=spack.config.default_list_scope(),
action=arguments.ConfigScope,
default=lambda: spack.config.default_list_scope(),
help="configuration scope to read from",
)
@@ -54,9 +53,8 @@ def setup_parser(subparser):
add_parser.add_argument("path", help="path to a Spack package repository directory")
add_parser.add_argument(
"--scope",
choices=scopes,
metavar=spack.config.SCOPES_METAVAR,
default=spack.config.default_modify_scope(),
action=arguments.ConfigScope,
default=lambda: spack.config.default_modify_scope(),
help="configuration scope to modify",
)
@@ -67,9 +65,8 @@ def setup_parser(subparser):
)
remove_parser.add_argument(
"--scope",
choices=scopes,
metavar=spack.config.SCOPES_METAVAR,
default=spack.config.default_modify_scope(),
action=arguments.ConfigScope,
default=lambda: spack.config.default_modify_scope(),
help="configuration scope to modify",
)

View File

@@ -6,8 +6,8 @@
import llnl.util.tty as tty
import spack.cmd
import spack.cmd.common.arguments as arguments
import spack.repo
from spack.cmd.common import arguments
description = "revert checked out package source code"
section = "build"

View File

@@ -12,12 +12,12 @@
import spack
import spack.cmd
import spack.cmd.common.arguments as arguments
import spack.config
import spack.environment
import spack.hash_types as ht
import spack.package_base
import spack.solver.asp as asp
from spack.cmd.common import arguments
description = "concretize a specs using an ASP solver"
section = "developer"

View File

@@ -10,11 +10,11 @@
import spack
import spack.cmd
import spack.cmd.common.arguments as arguments
import spack.environment as ev
import spack.hash_types as ht
import spack.spec
import spack.store
from spack.cmd.common import arguments
description = "show what would be installed, given a spec"
section = "build"

View File

@@ -8,13 +8,13 @@
import llnl.util.tty as tty
import spack.cmd
import spack.cmd.common.arguments as arguments
import spack.config
import spack.environment as ev
import spack.package_base
import spack.repo
import spack.stage
import spack.traverse
from spack.cmd.common import arguments
description = "expand downloaded archive in preparation for install"
section = "build"

View File

@@ -15,12 +15,12 @@
from llnl.util.tty import colify
import spack.cmd
import spack.cmd.common.arguments as arguments
import spack.environment as ev
import spack.install_test
import spack.package_base
import spack.repo
import spack.report
from spack.cmd.common import arguments
description = "run spack's tests for an install"
section = "admin"

View File

@@ -10,11 +10,11 @@
from llnl.util.filesystem import working_dir
import spack
import spack.cmd.common.arguments as arguments
import spack.config
import spack.paths
import spack.util.git
import spack.util.gpg
from spack.cmd.common import arguments
from spack.util.spack_yaml import syaml_dict
description = "set up spack for our tutorial (WARNING: modifies config!)"

View File

@@ -6,7 +6,7 @@
import llnl.util.tty as tty
import spack.cmd
import spack.cmd.common.arguments as arguments
from spack.cmd.common import arguments
description = "remove specs from an environment"
section = "environments"

View File

@@ -10,13 +10,13 @@
from llnl.util.tty.colify import colify
import spack.cmd
import spack.cmd.common.arguments as arguments
import spack.cmd.common.confirmation as confirmation
import spack.environment as ev
import spack.package_base
import spack.spec
import spack.store
import spack.traverse as traverse
from spack.cmd.common import arguments
from spack.database import InstallStatuses
description = "remove installed packages"

View File

@@ -227,9 +227,7 @@ def unit_test(parser, args, unknown_args):
# has been used, then test that extension.
pytest_root = spack.paths.spack_root
if args.extension:
target = args.extension
extensions = spack.extensions.get_extension_paths()
pytest_root = spack.extensions.path_for_extension(target, *extensions)
pytest_root = spack.extensions.load_extension(args.extension)
# pytest.ini lives in the root of the spack repository.
with llnl.util.filesystem.working_dir(pytest_root):

View File

@@ -7,10 +7,10 @@
import sys
import spack.cmd
import spack.cmd.common.arguments as arguments
import spack.error
import spack.user_environment as uenv
import spack.util.environment
from spack.cmd.common import arguments
description = "remove package from the user environment"
section = "user environment"

View File

@@ -8,9 +8,9 @@
import llnl.util.tty as tty
from llnl.util.tty.colify import colify
import spack.cmd.common.arguments as arguments
import spack.repo
import spack.spec
from spack.cmd.common import arguments
from spack.version import infinity_versions, ver
description = "list available versions of a package"

View File

@@ -154,6 +154,14 @@ def add_compilers_to_config(compilers, scope=None, init_config=True):
"""
compiler_config = get_compiler_config(scope, init_config)
for compiler in compilers:
if not compiler.cc:
tty.debug(f"{compiler.spec} does not have a C compiler")
if not compiler.cxx:
tty.debug(f"{compiler.spec} does not have a C++ compiler")
if not compiler.f77:
tty.debug(f"{compiler.spec} does not have a Fortran77 compiler")
if not compiler.fc:
tty.debug(f"{compiler.spec} does not have a Fortran compiler")
compiler_config.append(_to_dict(compiler))
spack.config.set("compilers", compiler_config, scope=scope)

View File

@@ -20,16 +20,16 @@ def __init__(self, *args, **kwargs):
self.version_argument = "-V"
# Subclasses use possible names of C compiler
cc_names = ["craycc", "cc"]
cc_names = ["craycc"]
# Subclasses use possible names of C++ compiler
cxx_names = ["crayCC", "CC"]
cxx_names = ["crayCC"]
# Subclasses use possible names of Fortran 77 compiler
f77_names = ["crayftn", "ftn"]
f77_names = ["crayftn"]
# Subclasses use possible names of Fortran 90 compiler
fc_names = ["crayftn", "ftn"]
fc_names = ["crayftn"]
# MacPorts builds gcc versions with prefixes and -mp-X.Y suffixes.
suffixes = [r"-mp-\d\.\d"]

View File

@@ -85,6 +85,14 @@ def cxx14_flag(self):
else:
return "-std=c++14"
@property
def cxx17_flag(self):
# https://www.intel.com/content/www/us/en/developer/articles/news/c17-features-supported-by-c-compiler.html
if self.real_version < Version("19"):
raise UnsupportedCompilerFlag(self, "the C++17 standard", "cxx17_flag", "< 19")
else:
return "-std=c++17"
@property
def c99_flag(self):
if self.real_version < Version("12"):

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