gasnet: add v2024.5.0 (#44478)

* Add GASNet v 2024.5.0

* cosmetic fix to info output

* Add a missing dependency

* Ensure GASNet detects the provided ROCm/CUDA dependency

* [@spackbot] updating style on behalf of bonachea

---------

Co-authored-by: bonachea <bonachea@users.noreply.github.com>

.github/workflows/bootstrap.yml

@@ -84,13 +84,11 @@ jobs:
       - name: Setup macOS
         if: ${{ matrix.runner != 'ubuntu-latest' }}
         run: |
-          brew install tree
-          # Remove GnuPG since we want to bootstrap it
-          sudo rm -rf /usr/local/bin/gpg
+          brew install tree gawk
+          sudo rm -rf $(command -v gpg gpg2)
       - name: Setup Ubuntu
         if: ${{ matrix.runner == 'ubuntu-latest' }}
-        run: |
-          sudo rm -rf $(which gpg) $(which gpg2) $(which patchelf)
+        run: sudo rm -rf $(command -v gpg gpg2 patchelf)
       - name: Checkout
         uses: actions/checkout@a5ac7e51b41094c92402da3b24376905380afc29
         with:

etc/spack/defaults/cray/modules.yaml

@@ -1,16 +0,0 @@
-# -------------------------------------------------------------------------
-# This is the default configuration for Spack's module file generation.
-#
-# Settings here are versioned with Spack and are intended to provide
-# sensible defaults out of the box. Spack maintainers should edit this
-# file to keep it current.
-#
-# Users can override these settings by editing the following files.
-#
-# Per-spack-instance settings (overrides defaults):
-#   $SPACK_ROOT/etc/spack/modules.yaml
-#
-# Per-user settings (overrides default and site settings):
-#   ~/.spack/modules.yaml
-# -------------------------------------------------------------------------
-modules: {}

lib/spack/docs/basic_usage.rst

@@ -1433,22 +1433,12 @@ the reserved keywords ``platform``, ``os`` and ``target``:
    $ spack install libelf os=ubuntu18.04
    $ spack install libelf target=broadwell
 
-or together by using the reserved keyword ``arch``:
-
-.. code-block:: console
-
-   $ spack install libelf arch=cray-CNL10-haswell
-
 Normally users don't have to bother specifying the architecture if they
 are installing software for their current host, as in that case the
 values will be detected automatically.  If you need fine-grained control
 over which packages use which targets (or over *all* packages' default
 target), see :ref:`package-preferences`.
 
-.. admonition:: Cray machines
-
-  The situation is a little bit different for Cray machines and a detailed
-  explanation on how the architecture can be set on them can be found at :ref:`cray-support`
 
 .. _support-for-microarchitectures:
 

lib/spack/docs/getting_started.rst

@@ -1364,187 +1364,6 @@ This will write the private key to the file `dinosaur.priv`.
     or for help on an issue or the Spack slack.
 
 
-.. _cray-support:
-
--------------
-Spack on Cray
--------------
-
-Spack differs slightly when used on a Cray system. The architecture spec
-can differentiate between the front-end and back-end processor and operating system.
-For example, on Edison at NERSC, the back-end target processor
-is "Ivy Bridge", so you can specify to use the back-end this way:
-
-.. code-block:: console
-
-   $ spack install zlib target=ivybridge
-
-You can also use the operating system to build against the back-end:
-
-.. code-block:: console
-
-   $ spack install zlib os=CNL10
-
-Notice that the name includes both the operating system name and the major
-version number concatenated together.
-
-Alternatively, if you want to build something for the front-end,
-you can specify the front-end target processor. The processor for a login node
-on Edison is "Sandy bridge" so we specify on the command line like so:
-
-.. code-block:: console
-
-   $ spack install zlib target=sandybridge
-
-And the front-end operating system is:
-
-.. code-block:: console
-
-   $ spack install zlib os=SuSE11
-
-^^^^^^^^^^^^^^^^^^^^^^^
-Cray compiler detection
-^^^^^^^^^^^^^^^^^^^^^^^
-
-Spack can detect compilers using two methods. For the front-end, we treat
-everything the same. The difference lies in back-end compiler detection.
-Back-end compiler detection is made via the Tcl module avail command.
-Once it detects the compiler it writes the appropriate PrgEnv and compiler
-module name to compilers.yaml and sets the paths to each compiler with Cray\'s
-compiler wrapper names (i.e. cc, CC, ftn). During build time, Spack will load
-the correct PrgEnv and compiler module and will call appropriate wrapper.
-
-The compilers.yaml config file will also differ. There is a
-modules section that is filled with the compiler's Programming Environment
-and module name. On other systems, this field is empty []:
-
-.. code-block:: yaml
-
-   - compiler:
-       modules:
-         - PrgEnv-intel
-         - intel/15.0.109
-
-As mentioned earlier, the compiler paths will look different on a Cray system.
-Since most compilers are invoked using cc, CC and ftn, the paths for each
-compiler are replaced with their respective Cray compiler wrapper names:
-
-.. code-block:: yaml
-
-     paths:
-       cc: cc
-       cxx: CC
-       f77: ftn
-       fc: ftn
-
-As opposed to an explicit path to the compiler executable. This allows Spack
-to call the Cray compiler wrappers during build time.
-
-For more on compiler configuration, check out :ref:`compiler-config`.
-
-Spack sets the default Cray link type to dynamic, to better match other
-other platforms. Individual packages can enable static linking (which is the
-default outside of Spack on cray systems) using the ``-static`` flag.
-
-^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
-Setting defaults and using Cray modules
-^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
-
-If you want to use default compilers for each PrgEnv and also be able
-to load cray external modules, you will need to set up a ``packages.yaml``.
-
-Here's an example of an external configuration for cray modules:
-
-.. code-block:: yaml
-
-   packages:
-     mpich:
-       externals:
-       - spec: "mpich@7.3.1%gcc@5.2.0 arch=cray_xc-haswell-CNL10"
-         modules:
-         - cray-mpich
-       - spec: "mpich@7.3.1%intel@16.0.0.109 arch=cray_xc-haswell-CNL10"
-         modules:
-         - cray-mpich
-     all:
-       providers:
-         mpi: [mpich]
-
-This tells Spack that for whatever package that depends on mpi, load the
-cray-mpich module into the environment. You can then be able to use whatever
-environment variables, libraries, etc, that are brought into the environment
-via module load.
-
-.. note::
-
-    For Cray-provided packages, it is best to use ``modules:`` instead of ``prefix:``
-    in ``packages.yaml``, because the Cray Programming Environment heavily relies on
-    modules (e.g., loading the ``cray-mpich`` module adds MPI libraries to the
-    compiler wrapper link line).
-
-You can set the default compiler that Spack can use for each compiler type.
-If you want to use the Cray defaults, then set them under ``all:`` in packages.yaml.
-In the compiler field, set the compiler specs in your order of preference.
-Whenever you build with that compiler type, Spack will concretize to that version.
-
-Here is an example of a full packages.yaml used at NERSC
-
-.. code-block:: yaml
-
-   packages:
-     mpich:
-       externals:
-       - spec: "mpich@7.3.1%gcc@5.2.0 arch=cray_xc-CNL10-ivybridge"
-         modules:
-         - cray-mpich
-       - spec: "mpich@7.3.1%intel@16.0.0.109 arch=cray_xc-SuSE11-ivybridge"
-         modules:
-         - cray-mpich
-       buildable: False
-     netcdf:
-       externals:
-       - spec: "netcdf@4.3.3.1%gcc@5.2.0 arch=cray_xc-CNL10-ivybridge"
-         modules:
-         - cray-netcdf
-       - spec: "netcdf@4.3.3.1%intel@16.0.0.109 arch=cray_xc-CNL10-ivybridge"
-         modules:
-         - cray-netcdf
-       buildable: False
-     hdf5:
-       externals:
-       - spec: "hdf5@1.8.14%gcc@5.2.0 arch=cray_xc-CNL10-ivybridge"
-         modules:
-         - cray-hdf5
-       - spec: "hdf5@1.8.14%intel@16.0.0.109 arch=cray_xc-CNL10-ivybridge"
-         modules:
-         - cray-hdf5
-       buildable: False
-     all:
-       compiler: [gcc@5.2.0, intel@16.0.0.109]
-       providers:
-         mpi: [mpich]
-
-Here we tell spack that whenever we want to build with gcc use version 5.2.0 or
-if we want to build with intel compilers, use version 16.0.0.109. We add a spec
-for each compiler type for each cray modules. This ensures that for each
-compiler on our system we can use that external module.
-
-For more on external packages check out the section :ref:`sec-external-packages`.
-
-^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
-Using Linux containers on Cray machines
-^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
-
-Spack uses environment variables particular to the Cray programming
-environment to determine which systems are Cray platforms. These
-environment variables may be propagated into containers that are not
-using the Cray programming environment.
-
-To ensure that Spack does not autodetect the Cray programming
-environment, unset the environment variable ``MODULEPATH``. This
-will cause Spack to treat a linux container on a Cray system as a base
-linux distro.
-
 .. _windows_support:
 
 ----------------

lib/spack/llnl/util/filesystem.py

@@ -766,7 +766,6 @@ def copy_tree(
     src: str,
     dest: str,
     symlinks: bool = True,
-    allow_broken_symlinks: bool = sys.platform != "win32",
     ignore: Optional[Callable[[str], bool]] = None,
     _permissions: bool = False,
 ):
@@ -789,8 +788,6 @@ def copy_tree(
         src (str): the directory to copy
         dest (str): the destination directory
         symlinks (bool): whether or not to preserve symlinks
-        allow_broken_symlinks (bool): whether or not to allow broken (dangling) symlinks,
-            On Windows, setting this to True will raise an exception. Defaults to true on unix.
         ignore (typing.Callable): function indicating which files to ignore
         _permissions (bool): for internal use only
 
@@ -798,8 +795,6 @@ def copy_tree(
         IOError: if *src* does not match any files or directories
         ValueError: if *src* is a parent directory of *dest*
     """
-    if allow_broken_symlinks and sys.platform == "win32":
-        raise llnl.util.symlink.SymlinkError("Cannot allow broken symlinks on Windows!")
     if _permissions:
         tty.debug("Installing {0} to {1}".format(src, dest))
     else:
@@ -872,16 +867,14 @@ def escaped_path(path):
                 copy_mode(s, d)
 
     for target, d, s in links:
-        symlink(target, d, allow_broken_symlinks=allow_broken_symlinks)
+        symlink(target, d)
         if _permissions:
             set_install_permissions(d)
             copy_mode(s, d)
 
 
 @system_path_filter
-def install_tree(
-    src, dest, symlinks=True, ignore=None, allow_broken_symlinks=sys.platform != "win32"
-):
+def install_tree(src, dest, symlinks=True, ignore=None):
     """Recursively install an entire directory tree rooted at *src*.
 
     Same as :py:func:`copy_tree` with the addition of setting proper
@@ -892,21 +885,12 @@ def install_tree(
         dest (str): the destination directory
         symlinks (bool): whether or not to preserve symlinks
         ignore (typing.Callable): function indicating which files to ignore
-        allow_broken_symlinks (bool): whether or not to allow broken (dangling) symlinks,
-            On Windows, setting this to True will raise an exception.
 
     Raises:
         IOError: if *src* does not match any files or directories
         ValueError: if *src* is a parent directory of *dest*
     """
-    copy_tree(
-        src,
-        dest,
-        symlinks=symlinks,
-        allow_broken_symlinks=allow_broken_symlinks,
-        ignore=ignore,
-        _permissions=True,
-    )
+    copy_tree(src, dest, symlinks=symlinks, ignore=ignore, _permissions=True)
 
 
 @system_path_filter

lib/spack/llnl/util/symlink.py

@@ -8,6 +8,7 @@
 import subprocess
 import sys
 import tempfile
+from typing import Union
 
 from llnl.util import lang, tty
 
@@ -16,92 +17,66 @@
 if sys.platform == "win32":
     from win32file import CreateHardLink
 
-is_windows = sys.platform == "win32"
 
+def _windows_symlink(
+    src: str, dst: str, target_is_directory: bool = False, *, dir_fd: Union[int, None] = None
+):
+    """On Windows with System Administrator privileges this will be a normal symbolic link via
+    os.symlink. On Windows without privledges the link will be a junction for a directory and a
+    hardlink for a file. On Windows the various link types are:
 
-def symlink(source_path: str, link_path: str, allow_broken_symlinks: bool = not is_windows):
-    """
-    Create a link.
+    Symbolic Link: A link to a file or directory on the same or different volume (drive letter) or
+    even to a remote file or directory (using UNC in its path). Need System Administrator
+    privileges to make these.
 
-    On non-Windows and Windows with System Administrator
-    privleges this will be a normal symbolic link via
-    os.symlink.
+    Hard Link: A link to a file on the same volume (drive letter) only. Every file (file's data)
+    has at least 1 hard link (file's name). But when this method creates a new hard link there will
+    be 2. Deleting all hard links effectively deletes the file. Don't need System Administrator
+    privileges.
 
-    On Windows without privledges the link will be a
-    junction for a directory and a hardlink for a file.
-    On Windows the various link types are:
-
-    Symbolic Link: A link to a file or directory on the
-    same or different volume (drive letter) or even to
-    a remote file or directory (using UNC in its path).
-    Need System Administrator privileges to make these.
-
-    Hard Link: A link to a file on the same volume (drive
-    letter) only. Every file (file's data) has at least 1
-    hard link (file's name). But when this method creates
-    a new hard link there will be 2. Deleting all hard
-    links effectively deletes the file. Don't need System
-    Administrator privileges.
-
-    Junction: A link to a directory on the same or different
-    volume (drive letter) but not to a remote directory. Don't
-    need System Administrator privileges.
-
-    Parameters:
-        source_path (str): The real file or directory that the link points to.
-            Must be absolute OR relative to the link.
-        link_path (str): The path where the link will exist.
-        allow_broken_symlinks (bool): On Linux or Mac, don't raise an exception if the source_path
-            doesn't exist. This will still raise an exception on Windows.
-    """
-    source_path = os.path.normpath(source_path)
+    Junction: A link to a directory on the same or different volume (drive letter) but not to a
+    remote directory. Don't need System Administrator privileges."""
+    source_path = os.path.normpath(src)
     win_source_path = source_path
-    link_path = os.path.normpath(link_path)
+    link_path = os.path.normpath(dst)
 
-    # Never allow broken links on Windows.
-    if sys.platform == "win32" and allow_broken_symlinks:
-        raise ValueError("allow_broken_symlinks parameter cannot be True on Windows.")
+    # Perform basic checks to make sure symlinking will succeed
+    if os.path.lexists(link_path):
+        raise AlreadyExistsError(f"Link path ({link_path}) already exists. Cannot create link.")
 
-    if not allow_broken_symlinks:
-        # Perform basic checks to make sure symlinking will succeed
-        if os.path.lexists(link_path):
-            raise AlreadyExistsError(
-                f"Link path ({link_path}) already exists. Cannot create link."
+    if not os.path.exists(source_path):
+        if os.path.isabs(source_path):
+            # An absolute source path that does not exist will result in a broken link.
+            raise SymlinkError(
+                f"Source path ({source_path}) is absolute but does not exist. Resulting "
+                f"link would be broken so not making link."
             )
-
-        if not os.path.exists(source_path):
-            if os.path.isabs(source_path) and not allow_broken_symlinks:
-                # An absolute source path that does not exist will result in a broken link.
-                raise SymlinkError(
-                    f"Source path ({source_path}) is absolute but does not exist. Resulting "
-                    f"link would be broken so not making link."
-                )
+        else:
+            # os.symlink can create a link when the given source path is relative to
+            # the link path. Emulate this behavior and check to see if the source exists
+            # relative to the link path ahead of link creation to prevent broken
+            # links from being made.
+            link_parent_dir = os.path.dirname(link_path)
+            relative_path = os.path.join(link_parent_dir, source_path)
+            if os.path.exists(relative_path):
+                # In order to work on windows, the source path needs to be modified to be
+                # relative because hardlink/junction dont resolve relative paths the same
+                # way as os.symlink. This is ignored on other operating systems.
+                win_source_path = relative_path
             else:
-                # os.symlink can create a link when the given source path is relative to
-                # the link path. Emulate this behavior and check to see if the source exists
-                # relative to the link path ahead of link creation to prevent broken
-                # links from being made.
-                link_parent_dir = os.path.dirname(link_path)
-                relative_path = os.path.join(link_parent_dir, source_path)
-                if os.path.exists(relative_path):
-                    # In order to work on windows, the source path needs to be modified to be
-                    # relative because hardlink/junction dont resolve relative paths the same
-                    # way as os.symlink. This is ignored on other operating systems.
-                    win_source_path = relative_path
-                elif not allow_broken_symlinks:
-                    raise SymlinkError(
-                        f"The source path ({source_path}) is not relative to the link path "
-                        f"({link_path}). Resulting link would be broken so not making link."
-                    )
+                raise SymlinkError(
+                    f"The source path ({source_path}) is not relative to the link path "
+                    f"({link_path}). Resulting link would be broken so not making link."
+                )
 
     # Create the symlink
-    if sys.platform == "win32" and not _windows_can_symlink():
+    if not _windows_can_symlink():
         _windows_create_link(win_source_path, link_path)
     else:
         os.symlink(source_path, link_path, target_is_directory=os.path.isdir(source_path))
 
 
-def islink(path: str) -> bool:
+def _windows_islink(path: str) -> bool:
     """Override os.islink to give correct answer for spack logic.
 
     For Non-Windows: a link can be determined with the os.path.islink method.
@@ -269,7 +244,7 @@ def _windows_create_hard_link(path: str, link: str):
         CreateHardLink(link, path)
 
 
-def readlink(path: str, *, dir_fd=None):
+def _windows_readlink(path: str, *, dir_fd=None):
     """Spack utility to override of os.readlink method to work cross platform"""
     if _windows_is_hardlink(path):
         return _windows_read_hard_link(path)
@@ -338,6 +313,16 @@ def resolve_link_target_relative_to_the_link(link):
     return os.path.join(link_dir, target)
 
 
+if sys.platform == "win32":
+    symlink = _windows_symlink
+    readlink = _windows_readlink
+    islink = _windows_islink
+else:
+    symlink = os.symlink
+    readlink = os.readlink
+    islink = os.path.islink
+
+
 class SymlinkError(RuntimeError):
     """Exception class for errors raised while creating symlinks,
     junctions and hard links

lib/spack/spack/bootstrap/_common.py

@@ -213,15 +213,18 @@ def _root_spec(spec_str: str) -> str:
     Args:
         spec_str: spec to be bootstrapped. Must be without compiler and target.
     """
-    # Add a compiler requirement to the root spec.
+    # Add a compiler and platform requirement to the root spec.
     platform = str(spack.platforms.host())
+
     if platform == "darwin":
         spec_str += " %apple-clang"
+    elif platform == "windows":
+        spec_str += " %msvc"
     elif platform == "linux":
         spec_str += " %gcc"
     elif platform == "freebsd":
         spec_str += " %clang"
-
+    spec_str += f" platform={platform}"
     target = archspec.cpu.host().family
     spec_str += f" target={target}"
 

lib/spack/spack/build_environment.py

@@ -91,7 +91,7 @@
 )
 from spack.util.executable import Executable
 from spack.util.log_parse import make_log_context, parse_log_events
-from spack.util.module_cmd import load_module, module, path_from_modules
+from spack.util.module_cmd import load_module, path_from_modules
 
 #
 # This can be set by the user to globally disable parallel builds.
@@ -190,14 +190,6 @@ def __call__(self, *args, **kwargs):
         return super().__call__(*args, **kwargs)
 
 
-def _on_cray():
-    host_platform = spack.platforms.host()
-    host_os = host_platform.operating_system("default_os")
-    on_cray = str(host_platform) == "cray"
-    using_cnl = re.match(r"cnl\d+", str(host_os))
-    return on_cray, using_cnl
-
-
 def clean_environment():
     # Stuff in here sanitizes the build environment to eliminate
     # anything the user has set that may interfere. We apply it immediately
@@ -241,17 +233,6 @@ def clean_environment():
         if varname.endswith("_ROOT") and varname != "SPACK_ROOT":
             env.unset(varname)
 
-    # On Cray "cluster" systems, unset CRAY_LD_LIBRARY_PATH to avoid
-    # interference with Spack dependencies.
-    # CNL requires these variables to be set (or at least some of them,
-    # depending on the CNL version).
-    on_cray, using_cnl = _on_cray()
-    if on_cray and not using_cnl:
-        env.unset("CRAY_LD_LIBRARY_PATH")
-        for varname in os.environ.keys():
-            if "PKGCONF" in varname:
-                env.unset(varname)
-
     # Unset the following variables because they can affect installation of
     # Autotools and CMake packages.
     build_system_vars = [
@@ -381,11 +362,7 @@ def set_compiler_environment_variables(pkg, env):
     _add_werror_handling(keep_werror, env)
 
     # Set the target parameters that the compiler will add
-    # Don't set on cray platform because the targeting module handles this
-    if spec.satisfies("platform=cray"):
-        isa_arg = ""
-    else:
-        isa_arg = spec.architecture.target.optimization_flags(compiler)
+    isa_arg = spec.architecture.target.optimization_flags(compiler)
     env.set("SPACK_TARGET_ARGS", isa_arg)
 
     # Trap spack-tracked compiler flags as appropriate.
@@ -833,14 +810,6 @@ def setup_package(pkg, dirty, context: Context = Context.BUILD):
         for mod in pkg.compiler.modules:
             load_module(mod)
 
-    # kludge to handle cray mpich and libsci being automatically loaded by
-    # PrgEnv modules on cray platform. Module unload does no damage when
-    # unnecessary
-    on_cray, _ = _on_cray()
-    if on_cray and not dirty:
-        for mod in ["cray-mpich", "cray-libsci"]:
-            module("unload", mod)
-
     if target and target.module_name:
         load_module(target.module_name)
 

lib/spack/spack/build_systems/cuda.py

@@ -110,9 +110,8 @@ def cuda_flags(arch_list):
     # From the NVIDIA install guide we know of conflicts for particular
     # platforms (linux, darwin), architectures (x86, powerpc) and compilers
     # (gcc, clang). We don't restrict %gcc and %clang conflicts to
-    # platform=linux, since they should also apply to platform=cray, and may
-    # apply to platform=darwin. We currently do not provide conflicts for
-    # platform=darwin with %apple-clang.
+    # platform=linux, since they may apply to platform=darwin. We currently
+    # do not provide conflicts for platform=darwin with %apple-clang.
 
     # Linux x86_64 compiler conflicts from here:
     # https://gist.github.com/ax3l/9489132

lib/spack/spack/build_systems/intel.py

@@ -937,32 +937,15 @@ def mpi_setup_dependent_build_environment(self, env, dependent_spec, compilers_o
             "I_MPI_ROOT": self.normalize_path("mpi"),
         }
 
-        # CAUTION - SIMILAR code in:
-        #   var/spack/repos/builtin/packages/mpich/package.py
-        #   var/spack/repos/builtin/packages/openmpi/package.py
-        #   var/spack/repos/builtin/packages/mvapich2/package.py
-        #
-        # On Cray, the regular compiler wrappers *are* the MPI wrappers.
-        if "platform=cray" in self.spec:
-            # TODO: Confirm
-            wrapper_vars.update(
-                {
-                    "MPICC": compilers_of_client["CC"],
-                    "MPICXX": compilers_of_client["CXX"],
-                    "MPIF77": compilers_of_client["F77"],
-                    "MPIF90": compilers_of_client["F90"],
-                }
-            )
-        else:
-            compiler_wrapper_commands = self.mpi_compiler_wrappers
-            wrapper_vars.update(
-                {
-                    "MPICC": compiler_wrapper_commands["MPICC"],
-                    "MPICXX": compiler_wrapper_commands["MPICXX"],
-                    "MPIF77": compiler_wrapper_commands["MPIF77"],
-                    "MPIF90": compiler_wrapper_commands["MPIF90"],
-                }
-            )
+        compiler_wrapper_commands = self.mpi_compiler_wrappers
+        wrapper_vars.update(
+            {
+                "MPICC": compiler_wrapper_commands["MPICC"],
+                "MPICXX": compiler_wrapper_commands["MPICXX"],
+                "MPIF77": compiler_wrapper_commands["MPIF77"],
+                "MPIF90": compiler_wrapper_commands["MPIF90"],
+            }
+        )
 
         # Ensure that the directory containing the compiler wrappers is in the
         # PATH. Spack packages add `prefix.bin` to their dependents' paths,

lib/spack/spack/build_systems/msbuild.py

@@ -24,7 +24,6 @@ class MSBuildPackage(spack.package_base.PackageBase):
     build_system("msbuild")
     conflicts("platform=linux", when="build_system=msbuild")
     conflicts("platform=darwin", when="build_system=msbuild")
-    conflicts("platform=cray", when="build_system=msbuild")
 
 
 @spack.builder.builder("msbuild")

lib/spack/spack/build_systems/nmake.py

@@ -24,7 +24,6 @@ class NMakePackage(spack.package_base.PackageBase):
     build_system("nmake")
     conflicts("platform=linux", when="build_system=nmake")
     conflicts("platform=darwin", when="build_system=nmake")
-    conflicts("platform=cray", when="build_system=nmake")
 
 
 @spack.builder.builder("nmake")

lib/spack/spack/build_systems/oneapi.py

@@ -36,9 +36,8 @@ class IntelOneApiPackage(Package):
         "target=ppc64:",
         "target=ppc64le:",
         "target=aarch64:",
-        "platform=darwin:",
-        "platform=cray:",
-        "platform=windows:",
+        "platform=darwin",
+        "platform=windows",
     ]:
         conflicts(c, msg="This package in only available for x86_64 and Linux")
 

lib/spack/spack/cmd/help.py

@@ -50,7 +50,7 @@
       @B{++}, @r{--}, @r{~~}, @B{==}                propagate variants to package dependencies
 
     architecture variants:
-      @m{platform=platform}             linux, darwin, cray, etc.
+      @m{platform=platform}             linux, darwin, freebsd, windows
       @m{os=operating_system}           specific <operating_system>
       @m{target=target}                 specific <target> processor
       @m{arch=platform-os-target}       shortcut for all three above

lib/spack/spack/cmd/install.py

@@ -61,7 +61,6 @@ def install_kwargs_from_args(args):
         "dependencies_use_cache": cache_opt(args.use_cache, dep_use_bc),
         "dependencies_cache_only": cache_opt(args.cache_only, dep_use_bc),
         "include_build_deps": args.include_build_deps,
-        "explicit": True,  # Use true as a default for install command
         "stop_at": args.until,
         "unsigned": args.unsigned,
         "install_deps": ("dependencies" in args.things_to_install),
@@ -473,6 +472,7 @@ def install_without_active_env(args, install_kwargs, reporter_factory):
             require_user_confirmation_for_overwrite(concrete_specs, args)
             install_kwargs["overwrite"] = [spec.dag_hash() for spec in concrete_specs]
 
-        installs = [(s.package, install_kwargs) for s in concrete_specs]
-        builder = PackageInstaller(installs)
+        installs = [s.package for s in concrete_specs]
+        install_kwargs["explicit"] = [s.dag_hash() for s in concrete_specs]
+        builder = PackageInstaller(installs, install_kwargs)
         builder.install()

lib/spack/spack/compiler.py

@@ -695,10 +695,6 @@ def compiler_environment(self):
         try:
             # load modules and set env variables
             for module in self.modules:
-                # On cray, mic-knl module cannot be loaded without cce module
-                # See: https://github.com/spack/spack/issues/3153
-                if os.environ.get("CRAY_CPU_TARGET") == "mic-knl":
-                    spack.util.module_cmd.load_module("cce")
                 spack.util.module_cmd.load_module(module)
 
             # apply other compiler environment changes

lib/spack/spack/environment/environment.py

@@ -1948,13 +1948,19 @@ def install_specs(self, specs: Optional[List[Spec]] = None, **install_args):
         specs = specs if specs is not None else roots
 
         # Extend the set of specs to overwrite with modified dev specs and their parents
-        install_args["overwrite"] = (
-            install_args.get("overwrite", []) + self._dev_specs_that_need_overwrite()
+        overwrite: Set[str] = set()
+        overwrite.update(install_args.get("overwrite", []), self._dev_specs_that_need_overwrite())
+        install_args["overwrite"] = overwrite
+
+        explicit: Set[str] = set()
+        explicit.update(
+            install_args.get("explicit", []),
+            (s.dag_hash() for s in specs),
+            (s.dag_hash() for s in roots),
         )
+        install_args["explicit"] = explicit
 
-        installs = [(spec.package, {**install_args, "explicit": spec in roots}) for spec in specs]
-
-        PackageInstaller(installs).install()
+        PackageInstaller([spec.package for spec in specs], install_args).install()
 
     def all_specs_generator(self) -> Iterable[Spec]:
         """Returns a generator for all concrete specs"""

lib/spack/spack/hooks/absolutify_elf_sonames.py

@@ -140,7 +140,7 @@ def post_install(spec, explicit=None):
         return
 
     # Only enable on platforms using ELF.
-    if not spec.satisfies("platform=linux") and not spec.satisfies("platform=cray"):
+    if not spec.satisfies("platform=linux"):
         return
 
     # Disable this hook when bootstrapping, to avoid recursion.

lib/spack/spack/hooks/drop_redundant_rpaths.py

@@ -117,7 +117,7 @@ def post_install(spec, explicit=None):
         return
 
     # Only enable on platforms using ELF.
-    if not spec.satisfies("platform=linux") and not spec.satisfies("platform=cray"):
+    if not spec.satisfies("platform=linux"):
         return
 
     visit_directory_tree(spec.prefix, ElfFilesWithRPathVisitor())

lib/spack/spack/installer.py

@@ -600,9 +600,7 @@ def dump_packages(spec: "spack.spec.Spec", path: str) -> None:
         if node is spec:
             spack.repo.PATH.dump_provenance(node, dest_pkg_dir)
         elif source_pkg_dir:
-            fs.install_tree(
-                source_pkg_dir, dest_pkg_dir, allow_broken_symlinks=(sys.platform != "win32")
-            )
+            fs.install_tree(source_pkg_dir, dest_pkg_dir)
 
 
 def get_dependent_ids(spec: "spack.spec.Spec") -> List[str]:
@@ -761,12 +759,8 @@ def __init__(self, pkg: "spack.package_base.PackageBase", install_args: dict):
         if not self.pkg.spec.concrete:
             raise ValueError(f"{self.pkg.name} must have a concrete spec")
 
-        # Cache the package phase options with the explicit package,
-        # popping the options to ensure installation of associated
-        # dependencies is NOT affected by these options.
-
-        self.pkg.stop_before_phase = install_args.pop("stop_before", None)  # type: ignore[attr-defined] # noqa: E501
-        self.pkg.last_phase = install_args.pop("stop_at", None)  # type: ignore[attr-defined]
+        self.pkg.stop_before_phase = install_args.get("stop_before")  # type: ignore[attr-defined] # noqa: E501
+        self.pkg.last_phase = install_args.get("stop_at")  # type: ignore[attr-defined]
 
         # Cache the package id for convenience
         self.pkg_id = package_id(pkg.spec)
@@ -1076,19 +1070,17 @@ def flag_installed(self, installed: List[str]) -> None:
 
     @property
     def explicit(self) -> bool:
-        """The package was explicitly requested by the user."""
-        return self.is_root and self.request.install_args.get("explicit", True)
+        return self.pkg.spec.dag_hash() in self.request.install_args.get("explicit", [])
 
     @property
-    def is_root(self) -> bool:
-        """The package was requested directly, but may or may not be explicit
-        in an environment."""
+    def is_build_request(self) -> bool:
+        """The package was requested directly"""
         return self.pkg == self.request.pkg
 
     @property
     def use_cache(self) -> bool:
         _use_cache = True
-        if self.is_root:
+        if self.is_build_request:
             return self.request.install_args.get("package_use_cache", _use_cache)
         else:
             return self.request.install_args.get("dependencies_use_cache", _use_cache)
@@ -1096,7 +1088,7 @@ def use_cache(self) -> bool:
     @property
     def cache_only(self) -> bool:
         _cache_only = False
-        if self.is_root:
+        if self.is_build_request:
             return self.request.install_args.get("package_cache_only", _cache_only)
         else:
             return self.request.install_args.get("dependencies_cache_only", _cache_only)
@@ -1122,24 +1114,17 @@ def priority(self):
 
 class PackageInstaller:
     """
-    Class for managing the install process for a Spack instance based on a
-    bottom-up DAG approach.
+    Class for managing the install process for a Spack instance based on a bottom-up DAG approach.
 
-    This installer can coordinate concurrent batch and interactive, local
-    and distributed (on a shared file system) builds for the same Spack
-    instance.
+    This installer can coordinate concurrent batch and interactive, local and distributed (on a
+    shared file system) builds for the same Spack instance.
     """
 
-    def __init__(self, installs: List[Tuple["spack.package_base.PackageBase", dict]] = []) -> None:
-        """Initialize the installer.
-
-        Args:
-            installs (list): list of tuples, where each
-                tuple consists of a package (PackageBase) and its associated
-                 install arguments (dict)
-        """
+    def __init__(
+        self, packages: List["spack.package_base.PackageBase"], install_args: dict
+    ) -> None:
         # List of build requests
-        self.build_requests = [BuildRequest(pkg, install_args) for pkg, install_args in installs]
+        self.build_requests = [BuildRequest(pkg, install_args) for pkg in packages]
 
         # Priority queue of build tasks
         self.build_pq: List[Tuple[Tuple[int, int], BuildTask]] = []
@@ -1562,7 +1547,7 @@ def _add_tasks(self, request: BuildRequest, all_deps):
         #
         # External and upstream packages need to get flagged as installed to
         # ensure proper status tracking for environment build.
-        explicit = request.install_args.get("explicit", True)
+        explicit = request.pkg.spec.dag_hash() in request.install_args.get("explicit", [])
         not_local = _handle_external_and_upstream(request.pkg, explicit)
         if not_local:
             self._flag_installed(request.pkg)
@@ -1683,10 +1668,6 @@ def _install_task(self, task: BuildTask, install_status: InstallStatus) -> None:
         if not pkg.unit_test_check():
             return
 
-        # Injecting information to know if this installation request is the root one
-        # to determine in BuildProcessInstaller whether installation is explicit or not
-        install_args["is_root"] = task.is_root
-
         try:
             self._setup_install_dir(pkg)
 
@@ -1998,8 +1979,8 @@ def install(self) -> None:
 
         self._init_queue()
         fail_fast_err = "Terminating after first install failure"
-        single_explicit_spec = len(self.build_requests) == 1
-        failed_explicits = []
+        single_requested_spec = len(self.build_requests) == 1
+        failed_build_requests = []
 
         install_status = InstallStatus(len(self.build_pq))
 
@@ -2197,14 +2178,11 @@ def install(self) -> None:
                 if self.fail_fast:
                     raise InstallError(f"{fail_fast_err}: {str(exc)}", pkg=pkg)
 
-                # Terminate at this point if the single explicit spec has
-                # failed to install.
-                if single_explicit_spec and task.explicit:
-                    raise
-
-                # Track explicit spec id and error to summarize when done
-                if task.explicit:
-                    failed_explicits.append((pkg, pkg_id, str(exc)))
+                # Terminate when a single build request has failed, or summarize errors later.
+                if task.is_build_request:
+                    if single_requested_spec:
+                        raise
+                    failed_build_requests.append((pkg, pkg_id, str(exc)))
 
             finally:
                 # Remove the install prefix if anything went wrong during
@@ -2227,16 +2205,16 @@ def install(self) -> None:
             if request.install_args.get("install_package") and request.pkg_id not in self.installed
         ]
 
-        if failed_explicits or missing:
-            for _, pkg_id, err in failed_explicits:
+        if failed_build_requests or missing:
+            for _, pkg_id, err in failed_build_requests:
                 tty.error(f"{pkg_id}: {err}")
 
             for _, pkg_id in missing:
                 tty.error(f"{pkg_id}: Package was not installed")
 
-            if len(failed_explicits) > 0:
-                pkg = failed_explicits[0][0]
-                ids = [pkg_id for _, pkg_id, _ in failed_explicits]
+            if len(failed_build_requests) > 0:
+                pkg = failed_build_requests[0][0]
+                ids = [pkg_id for _, pkg_id, _ in failed_build_requests]
                 tty.debug(
                     "Associating installation failure with first failed "
                     f"explicit package ({ids[0]}) from {', '.join(ids)}"
@@ -2295,7 +2273,7 @@ def __init__(self, pkg: "spack.package_base.PackageBase", install_args: dict):
         self.verbose = bool(install_args.get("verbose", False))
 
         # whether installation was explicitly requested by the user
-        self.explicit = install_args.get("is_root", False) and install_args.get("explicit", True)
+        self.explicit = pkg.spec.dag_hash() in install_args.get("explicit", [])
 
         # env before starting installation
         self.unmodified_env = install_args.get("unmodified_env", {})
@@ -2380,9 +2358,7 @@ def _install_source(self) -> None:
         src_target = os.path.join(pkg.spec.prefix, "share", pkg.name, "src")
         tty.debug(f"{self.pre} Copying source to {src_target}")
 
-        fs.install_tree(
-            pkg.stage.source_path, src_target, allow_broken_symlinks=(sys.platform != "win32")
-        )
+        fs.install_tree(pkg.stage.source_path, src_target)
 
     def _real_install(self) -> None:
         import spack.builder

lib/spack/spack/operating_systems/__init__.py

@@ -3,22 +3,12 @@
 #
 # SPDX-License-Identifier: (Apache-2.0 OR MIT)
 from ._operating_system import OperatingSystem
-from .cray_backend import CrayBackend
-from .cray_frontend import CrayFrontend
 from .freebsd import FreeBSDOs
 from .linux_distro import LinuxDistro
 from .mac_os import MacOs
 from .windows_os import WindowsOs
 
-__all__ = [
-    "OperatingSystem",
-    "LinuxDistro",
-    "MacOs",
-    "CrayFrontend",
-    "CrayBackend",
-    "WindowsOs",
-    "FreeBSDOs",
-]
+__all__ = ["OperatingSystem", "LinuxDistro", "MacOs", "WindowsOs", "FreeBSDOs"]
 
 #: List of all the Operating Systems known to Spack
-operating_systems = [LinuxDistro, MacOs, CrayFrontend, CrayBackend, WindowsOs, FreeBSDOs]
+operating_systems = [LinuxDistro, MacOs, WindowsOs, FreeBSDOs]

lib/spack/spack/operating_systems/cray_backend.py

@@ -1,172 +0,0 @@
-# Copyright 2013-2024 Lawrence Livermore National Security, LLC and other
-# Spack Project Developers. See the top-level COPYRIGHT file for details.
-#
-# SPDX-License-Identifier: (Apache-2.0 OR MIT)
-
-import os
-import re
-
-import llnl.util.tty as tty
-
-import spack.error
-import spack.version
-from spack.util.module_cmd import module
-
-from .linux_distro import LinuxDistro
-
-#: Possible locations of the Cray CLE release file,
-#: which we look at to get the CNL OS version.
-_cle_release_file = "/etc/opt/cray/release/cle-release"
-_clerelease_file = "/etc/opt/cray/release/clerelease"
-
-
-def read_cle_release_file():
-    """Read the CLE release file and return a dict with its attributes.
-
-    This file is present on newer versions of Cray.
-
-    The release file looks something like this::
-
-        RELEASE=6.0.UP07
-        BUILD=6.0.7424
-        ...
-
-    The dictionary we produce looks like this::
-
-        {
-          "RELEASE": "6.0.UP07",
-          "BUILD": "6.0.7424",
-          ...
-        }
-
-    Returns:
-        dict: dictionary of release attributes
-    """
-    with open(_cle_release_file) as release_file:
-        result = {}
-        for line in release_file:
-            # use partition instead of split() to ensure we only split on
-            # the first '=' in the line.
-            key, _, value = line.partition("=")
-            result[key] = value.strip()
-        return result
-
-
-def read_clerelease_file():
-    """Read the CLE release file and return the Cray OS version.
-
-    This file is present on older versions of Cray.
-
-    The release file looks something like this::
-
-        5.2.UP04
-
-    Returns:
-        str: the Cray OS version
-    """
-    with open(_clerelease_file) as release_file:
-        for line in release_file:
-            return line.strip()
-
-
-class CrayBackend(LinuxDistro):
-    """Compute Node Linux (CNL) is the operating system used for the Cray XC
-    series super computers. It is a very stripped down version of GNU/Linux.
-    Any compilers found through this operating system will be used with
-    modules. If updated, user must make sure that version and name are
-    updated to indicate that OS has been upgraded (or downgraded)
-    """
-
-    def __init__(self):
-        name = "cnl"
-        version = self._detect_crayos_version()
-        if version:
-            # If we found a CrayOS version, we do not want the information
-            # from LinuxDistro. In order to skip the logic from
-            # distro.linux_distribution, while still calling __init__
-            # methods further up the MRO, we skip LinuxDistro in the MRO and
-            # call the OperatingSystem superclass __init__ method
-            super(LinuxDistro, self).__init__(name, version)
-        else:
-            super().__init__()
-        self.modulecmd = module
-
-    def __str__(self):
-        return self.name + str(self.version)
-
-    @classmethod
-    def _detect_crayos_version(cls):
-        if os.path.isfile(_cle_release_file):
-            release_attrs = read_cle_release_file()
-            if "RELEASE" not in release_attrs:
-                # This Cray system uses a base OS not CLE/CNL
-                return None
-            v = spack.version.Version(release_attrs["RELEASE"])
-            return v[0]
-        elif os.path.isfile(_clerelease_file):
-            v = read_clerelease_file()
-            return spack.version.Version(v)[0]
-        else:
-            # Not all Cray systems run CNL on the backend.
-            # Systems running in what Cray calls "cluster" mode run other
-            # linux OSs under the Cray PE.
-            # So if we don't detect any Cray OS version on the system,
-            # we return None. We can't ever be sure we will get a Cray OS
-            # version.
-            # Returning None allows the calling code to test for the value
-            # being "True-ish" rather than requiring a try/except block.
-            return None
-
-    def arguments_to_detect_version_fn(self, paths):
-        import spack.compilers
-
-        command_arguments = []
-        for compiler_name in spack.compilers.supported_compilers():
-            cmp_cls = spack.compilers.class_for_compiler_name(compiler_name)
-
-            # If the compiler doesn't have a corresponding
-            # Programming Environment, skip to the next
-            if cmp_cls.PrgEnv is None:
-                continue
-
-            if cmp_cls.PrgEnv_compiler is None:
-                tty.die("Must supply PrgEnv_compiler with PrgEnv")
-
-            compiler_id = spack.compilers.CompilerID(self, compiler_name, None)
-            detect_version_args = spack.compilers.DetectVersionArgs(
-                id=compiler_id, variation=(None, None), language="cc", path="cc"
-            )
-            command_arguments.append(detect_version_args)
-        return command_arguments
-
-    def detect_version(self, detect_version_args):
-        import spack.compilers
-
-        modulecmd = self.modulecmd
-        compiler_name = detect_version_args.id.compiler_name
-        compiler_cls = spack.compilers.class_for_compiler_name(compiler_name)
-        output = modulecmd("avail", compiler_cls.PrgEnv_compiler)
-        version_regex = r"({0})/([\d\.]+[\d]-?[\w]*)".format(compiler_cls.PrgEnv_compiler)
-        matches = re.findall(version_regex, output)
-        version = tuple(version for _, version in matches if "classic" not in version)
-        compiler_id = detect_version_args.id
-        value = detect_version_args._replace(id=compiler_id._replace(version=version))
-        return value, None
-
-    def make_compilers(self, compiler_id, paths):
-        import spack.spec
-
-        name = compiler_id.compiler_name
-        cmp_cls = spack.compilers.class_for_compiler_name(name)
-        compilers = []
-        for v in compiler_id.version:
-            comp = cmp_cls(
-                spack.spec.CompilerSpec(name + "@=" + v),
-                self,
-                "any",
-                ["cc", "CC", "ftn"],
-                [cmp_cls.PrgEnv, name + "/" + v],
-            )
-
-            compilers.append(comp)
-        return compilers

lib/spack/spack/operating_systems/cray_frontend.py

@@ -1,105 +0,0 @@
-# Copyright 2013-2024 Lawrence Livermore National Security, LLC and other
-# Spack Project Developers. See the top-level COPYRIGHT file for details.
-#
-# SPDX-License-Identifier: (Apache-2.0 OR MIT)
-
-import contextlib
-import os
-import re
-
-import llnl.util.filesystem as fs
-import llnl.util.lang
-import llnl.util.tty as tty
-
-from spack.util.environment import get_path
-from spack.util.module_cmd import module
-
-from .linux_distro import LinuxDistro
-
-
-@contextlib.contextmanager
-def unload_programming_environment():
-    """Context manager that unloads Cray Programming Environments."""
-    env_bu = None
-
-    # We rely on the fact that the PrgEnv-* modules set the PE_ENV
-    # environment variable.
-    if "PE_ENV" in os.environ:
-        # Copy environment variables to restore them after the compiler
-        # detection. We expect that the only thing PrgEnv-* modules do is
-        # the environment variables modifications.
-        env_bu = os.environ.copy()
-
-        # Get the name of the module from the environment variable.
-        prg_env = "PrgEnv-" + os.environ["PE_ENV"].lower()
-
-        # Unload the PrgEnv-* module. By doing this we intentionally
-        # provoke errors when the Cray's compiler wrappers are executed
-        # (Error: A PrgEnv-* modulefile must be loaded.) so they will not
-        # be detected as valid compilers by the overridden method. We also
-        # expect that the modules that add the actual compilers' binaries
-        # into the PATH environment variable (i.e. the following modules:
-        # 'intel', 'cce', 'gcc', etc.) will also be unloaded since they are
-        # specified as prerequisites in the PrgEnv-* modulefiles.
-        module("unload", prg_env)
-
-    yield
-
-    # Restore the environment.
-    if env_bu is not None:
-        os.environ.clear()
-        os.environ.update(env_bu)
-
-
-class CrayFrontend(LinuxDistro):
-    """Represents OS that runs on login and service nodes of the Cray platform.
-    It acts as a regular Linux without Cray-specific modules and compiler
-    wrappers."""
-
-    @property
-    def compiler_search_paths(self):
-        """Calls the default function but unloads Cray's programming
-        environments first.
-
-        This prevents from detecting Cray compiler wrappers and avoids
-        possible false detections.
-        """
-        import spack.compilers
-
-        with unload_programming_environment():
-            search_paths = get_path("PATH")
-
-        extract_path_re = re.compile(r"prepend-path[\s]*PATH[\s]*([/\w\.:-]*)")
-
-        for compiler_cls in spack.compilers.all_compiler_types():
-            # Check if the compiler class is supported on Cray
-            prg_env = getattr(compiler_cls, "PrgEnv", None)
-            compiler_module = getattr(compiler_cls, "PrgEnv_compiler", None)
-            if not (prg_env and compiler_module):
-                continue
-
-            # It is supported, check which versions are available
-            output = module("avail", compiler_cls.PrgEnv_compiler)
-            version_regex = r"({0})/([\d\.]+[\d]-?[\w]*)".format(compiler_cls.PrgEnv_compiler)
-            matches = re.findall(version_regex, output)
-            versions = tuple(version for _, version in matches if "classic" not in version)
-
-            # Now inspect the modules and add to paths
-            msg = "[CRAY FE] Detected FE compiler [name={0}, versions={1}]"
-            tty.debug(msg.format(compiler_module, versions))
-            for v in versions:
-                try:
-                    current_module = compiler_module + "/" + v
-                    out = module("show", current_module)
-                    match = extract_path_re.search(out)
-                    search_paths += match.group(1).split(":")
-                except Exception as e:
-                    msg = (
-                        "[CRAY FE] An unexpected error occurred while "
-                        "detecting FE compiler [compiler={0}, "
-                        " version={1}, error={2}]"
-                    )
-                    tty.debug(msg.format(compiler_cls.name, v, str(e)))
-
-        search_paths = list(llnl.util.lang.dedupe(search_paths))
-        return fs.search_paths_for_executables(*search_paths)

lib/spack/spack/package_base.py

@@ -1881,7 +1881,10 @@ def do_install(self, **kwargs):
             verbose (bool): Display verbose build output (by default,
                 suppresses it)
         """
-        PackageInstaller([(self, kwargs)]).install()
+        explicit = kwargs.get("explicit", True)
+        if isinstance(explicit, bool):
+            kwargs["explicit"] = {self.spec.dag_hash()} if explicit else set()
+        PackageInstaller([self], kwargs).install()
 
     # TODO (post-34236): Update tests and all packages that use this as a
     # TODO (post-34236): package method to the routine made available to

lib/spack/spack/platforms/__init__.py

@@ -6,7 +6,6 @@
 
 from ._functions import _host, by_name, platforms, prevent_cray_detection, reset
 from ._platform import Platform
-from .cray import Cray
 from .darwin import Darwin
 from .freebsd import FreeBSD
 from .linux import Linux
@@ -15,7 +14,6 @@
 
 __all__ = [
     "Platform",
-    "Cray",
     "Darwin",
     "Linux",
     "FreeBSD",

lib/spack/spack/platforms/_functions.py

@@ -8,7 +8,6 @@
 
 import spack.util.environment
 
-from .cray import Cray
 from .darwin import Darwin
 from .freebsd import FreeBSD
 from .linux import Linux
@@ -16,7 +15,7 @@
 from .windows import Windows
 
 #: List of all the platform classes known to Spack
-platforms = [Cray, Darwin, Linux, Windows, FreeBSD, Test]
+platforms = [Darwin, Linux, Windows, FreeBSD, Test]
 
 
 @llnl.util.lang.memoized

lib/spack/spack/platforms/cray.py

@@ -2,254 +2,10 @@
 # Spack Project Developers. See the top-level COPYRIGHT file for details.
 #
 # SPDX-License-Identifier: (Apache-2.0 OR MIT)
-import os
 import os.path
-import platform
-import re
-
-import archspec.cpu
-
-import llnl.util.tty as tty
-from llnl.util.symlink import readlink
-
-import spack.target
-import spack.version
-from spack.operating_systems.cray_backend import CrayBackend
-from spack.operating_systems.cray_frontend import CrayFrontend
-from spack.paths import build_env_path
-from spack.util.executable import Executable
-from spack.util.module_cmd import module
-
-from ._platform import NoPlatformError, Platform
-
-_craype_name_to_target_name = {
-    "x86-cascadelake": "cascadelake",
-    "x86-naples": "zen",
-    "x86-rome": "zen2",
-    "x86-milan": "zen3",
-    "x86-skylake": "skylake_avx512",
-    "mic-knl": "mic_knl",
-    "interlagos": "bulldozer",
-    "abudhabi": "piledriver",
-}
-
-_ex_craype_dir = "/opt/cray/pe/cpe"
-_xc_craype_dir = "/opt/cray/pe/cdt"
 
 
 def slingshot_network():
     return os.path.exists("/opt/cray/pe") and (
         os.path.exists("/lib64/libcxi.so") or os.path.exists("/usr/lib64/libcxi.so")
     )
-
-
-def _target_name_from_craype_target_name(name):
-    return _craype_name_to_target_name.get(name, name)
-
-
-class Cray(Platform):
-    priority = 10
-
-    def __init__(self):
-        """Create a Cray system platform.
-
-        Target names should use craype target names but not include the
-        'craype-' prefix. Uses first viable target from:
-          self
-          envars [SPACK_FRONT_END, SPACK_BACK_END]
-          configuration file "targets.yaml" with keys 'front_end', 'back_end'
-          scanning /etc/bash/bashrc.local for back_end only
-        """
-        super().__init__("cray")
-
-        # Make all craype targets available.
-        for target in self._avail_targets():
-            name = _target_name_from_craype_target_name(target)
-            self.add_target(name, spack.target.Target(name, "craype-%s" % target))
-
-        self.back_end = os.environ.get("SPACK_BACK_END", self._default_target_from_env())
-        self.default = self.back_end
-        if self.back_end not in self.targets:
-            # We didn't find a target module for the backend
-            raise NoPlatformError()
-
-        # Setup frontend targets
-        for name in archspec.cpu.TARGETS:
-            if name not in self.targets:
-                self.add_target(name, spack.target.Target(name))
-        self.front_end = os.environ.get("SPACK_FRONT_END", archspec.cpu.host().name)
-        if self.front_end not in self.targets:
-            self.add_target(self.front_end, spack.target.Target(self.front_end))
-
-        front_distro = CrayFrontend()
-        back_distro = CrayBackend()
-
-        self.default_os = str(back_distro)
-        self.back_os = self.default_os
-        self.front_os = str(front_distro)
-
-        self.add_operating_system(self.back_os, back_distro)
-        if self.front_os != self.back_os:
-            self.add_operating_system(self.front_os, front_distro)
-
-    def setup_platform_environment(self, pkg, env):
-        """Change the linker to default dynamic to be more
-        similar to linux/standard linker behavior
-        """
-        # Unload these modules to prevent any silent linking or unnecessary
-        # I/O profiling in the case of darshan.
-        modules_to_unload = ["cray-mpich", "darshan", "cray-libsci", "altd"]
-        for mod in modules_to_unload:
-            module("unload", mod)
-
-        env.set("CRAYPE_LINK_TYPE", "dynamic")
-        cray_wrapper_names = os.path.join(build_env_path, "cray")
-
-        if os.path.isdir(cray_wrapper_names):
-            env.prepend_path("PATH", cray_wrapper_names)
-            env.prepend_path("SPACK_ENV_PATH", cray_wrapper_names)
-
-        # Makes spack installed pkg-config work on Crays
-        env.append_path("PKG_CONFIG_PATH", "/usr/lib64/pkgconfig")
-        env.append_path("PKG_CONFIG_PATH", "/usr/local/lib64/pkgconfig")
-
-        # CRAY_LD_LIBRARY_PATH is used at build time by the cray compiler
-        # wrappers to augment LD_LIBRARY_PATH. This is to avoid long load
-        # times at runtime. This behavior is not always respected on cray
-        # "cluster" systems, so we reproduce it here.
-        if os.environ.get("CRAY_LD_LIBRARY_PATH"):
-            env.prepend_path("LD_LIBRARY_PATH", os.environ["CRAY_LD_LIBRARY_PATH"])
-
-    @classmethod
-    def craype_type_and_version(cls):
-        if os.path.isdir(_ex_craype_dir):
-            craype_dir = _ex_craype_dir
-            craype_type = "EX"
-        elif os.path.isdir(_xc_craype_dir):
-            craype_dir = _xc_craype_dir
-            craype_type = "XC"
-        else:
-            return (None, None)
-
-        # Take the default version from known symlink path
-        default_path = os.path.join(craype_dir, "default")
-        if os.path.islink(default_path):
-            version = spack.version.Version(readlink(default_path))
-            return (craype_type, version)
-
-        # If no default version, sort available versions and return latest
-        versions_available = [spack.version.Version(v) for v in os.listdir(craype_dir)]
-        versions_available.sort(reverse=True)
-        if not versions_available:
-            return (craype_type, None)
-        return (craype_type, versions_available[0])
-
-    @classmethod
-    def detect(cls):
-        """
-        Detect whether this system requires CrayPE module support.
-
-        Systems with newer CrayPE (21.10 for EX systems, future work for CS and
-        XC systems) have compilers and MPI wrappers that can be used directly
-        by path. These systems are considered ``linux`` platforms.
-
-        For systems running an older CrayPE, we detect the Cray platform based
-        on the availability through `module` of the Cray programming
-        environment. If this environment is available, we can use it to find
-        compilers, target modules, etc. If the Cray programming environment is
-        not available via modules, then we will treat it as a standard linux
-        system, as the Cray compiler wrappers and other components of the Cray
-        programming environment are irrelevant without module support.
-        """
-        if "opt/cray" not in os.environ.get("MODULEPATH", ""):
-            return False
-
-        craype_type, craype_version = cls.craype_type_and_version()
-        if craype_type == "XC":
-            return True
-        if craype_type == "EX" and craype_version < spack.version.Version("21.10"):
-            return True
-        return False
-
-    def _default_target_from_env(self):
-        """Set and return the default CrayPE target loaded in a clean login
-        session.
-
-        A bash subshell is launched with a wiped environment and the list of
-        loaded modules is parsed for the first acceptable CrayPE target.
-        """
-        # env -i /bin/bash -lc echo $CRAY_CPU_TARGET 2> /dev/null
-        if getattr(self, "default", None) is None:
-            bash = Executable("/bin/bash")
-            output = bash(
-                "--norc",
-                "--noprofile",
-                "-lc",
-                "echo $CRAY_CPU_TARGET",
-                env={"TERM": os.environ.get("TERM", "")},
-                output=str,
-                error=os.devnull,
-            )
-
-            default_from_module = "".join(output.split())  # rm all whitespace
-            if default_from_module:
-                tty.debug("Found default module:%s" % default_from_module)
-                return default_from_module
-            else:
-                front_end = archspec.cpu.host()
-                # Look for the frontend architecture or closest ancestor
-                # available in cray target modules
-                avail = [_target_name_from_craype_target_name(x) for x in self._avail_targets()]
-                for front_end_possibility in [front_end] + front_end.ancestors:
-                    if front_end_possibility.name in avail:
-                        tty.debug("using front-end architecture or available ancestor")
-                        return front_end_possibility.name
-                else:
-                    tty.debug("using platform.machine as default")
-                    return platform.machine()
-
-    def _avail_targets(self):
-        """Return a list of available CrayPE CPU targets."""
-
-        def modules_in_output(output):
-            """Returns a list of valid modules parsed from modulecmd output"""
-            return [i for i in re.split(r"\s\s+|\n", output)]
-
-        def target_names_from_modules(modules):
-            # Craype- module prefixes that are not valid CPU targets.
-            targets = []
-            for mod in modules:
-                if "craype-" in mod:
-                    name = mod[7:]
-                    name = name.split()[0]
-                    _n = name.replace("-", "_")  # test for mic-knl/mic_knl
-                    is_target_name = name in archspec.cpu.TARGETS or _n in archspec.cpu.TARGETS
-                    is_cray_target_name = name in _craype_name_to_target_name
-                    if is_target_name or is_cray_target_name:
-                        targets.append(name)
-
-            return targets
-
-        def modules_from_listdir():
-            craype_default_path = "/opt/cray/pe/craype/default/modulefiles"
-            if os.path.isdir(craype_default_path):
-                return os.listdir(craype_default_path)
-            return []
-
-        if getattr(self, "_craype_targets", None) is None:
-            strategies = [
-                lambda: modules_in_output(module("avail", "-t", "craype-")),
-                modules_from_listdir,
-            ]
-            for available_craype_modules in strategies:
-                craype_modules = available_craype_modules()
-                craype_targets = target_names_from_modules(craype_modules)
-                if craype_targets:
-                    self._craype_targets = craype_targets
-                    break
-            else:
-                # If nothing is found add platform.machine()
-                # to avoid Spack erroring out
-                self._craype_targets = [platform.machine()]
-
-        return self._craype_targets

lib/spack/spack/solver/asp.py

@@ -2440,7 +2440,7 @@ def setup(
 
         if using_libc_compatibility():
             for libc in self.libcs:
-                self.gen.fact(fn.allowed_libc(libc.name, libc.version))
+                self.gen.fact(fn.host_libc(libc.name, libc.version))
 
         if not allow_deprecated:
             self.gen.fact(fn.deprecated_versions_not_allowed())
@@ -3799,12 +3799,6 @@ class Solver:
     def __init__(self):
         self.driver = PyclingoDriver()
         self.selector = ReusableSpecsSelector(configuration=spack.config.CONFIG)
-        if spack.platforms.host().name == "cray":
-            msg = (
-                "The Cray platform, i.e. 'platform=cray', will be removed in Spack v0.23. "
-                "All Cray machines will be then detected as 'platform=linux'."
-            )
-            warnings.warn(msg)
 
     @staticmethod
     def _check_input_and_extract_concrete_specs(specs):

lib/spack/spack/solver/libc_compatibility.lp

@@ -24,12 +24,20 @@ has_built_packages() :- build(X), not external(X).
 % A libc is needed in the DAG
 :- has_built_packages(), not provider(_, node(0, "libc")).
 
-% The libc must be chosen among available ones
+% Non-libc reused specs must be host libc compatible. In case we build packages, we get a
+% host compatible libc provider from other rules. If nothing is built, there is no libc provider,
+% since it's pruned from reusable specs, meaning we have to explicitly impose reused specs are host
+% compatible.
+:- attr("hash", node(R, ReusedPackage), Hash),
+   not provider(node(R, ReusedPackage), node(0, "libc")),
+   not attr("compatible_libc", node(R, ReusedPackage), _, _).
+
+% The libc provider must be one that a compiler can target
 :- has_built_packages(),
    provider(node(X, LibcPackage), node(0, "libc")),
    attr("node", node(X, LibcPackage)),
    attr("version", node(X, LibcPackage), LibcVersion),
-   not allowed_libc(LibcPackage, LibcVersion).
+   not host_libc(LibcPackage, LibcVersion).
 
 % A built node must depend on libc
 :- build(PackageNode),

lib/spack/spack/spec.py

@@ -2816,9 +2816,7 @@ def _old_concretize(self, tests=False, deprecation_warning=True):
 
         # Check if we can produce an optimized binary (will throw if
         # there are declared inconsistencies)
-        # No need on platform=cray because of the targeting modules
-        if not self.satisfies("platform=cray"):
-            self.architecture.target.optimization_flags(self.compiler)
+        self.architecture.target.optimization_flags(self.compiler)
 
     def _patches_assigned(self):
         """Whether patches have been assigned to this spec by the concretizer."""

lib/spack/spack/test/architecture.py

@@ -2,16 +2,12 @@
 # Spack Project Developers. See the top-level COPYRIGHT file for details.
 #
 # SPDX-License-Identifier: (Apache-2.0 OR MIT)
-import os
 import platform
-import sys
 
 import pytest
 
 import archspec.cpu
 
-import llnl.util.filesystem as fs
-
 import spack.compilers
 import spack.concretize
 import spack.operating_systems
@@ -25,9 +21,8 @@ def current_host_platform():
     """Return the platform of the current host as detected by the
     'platform' stdlib package.
     """
-    if os.path.exists("/opt/cray/pe"):
-        current_platform = spack.platforms.Cray()
-    elif "Linux" in platform.system():
+    current_platform = None
+    if "Linux" in platform.system():
         current_platform = spack.platforms.Linux()
     elif "Darwin" in platform.system():
         current_platform = spack.platforms.Darwin()
@@ -222,28 +217,3 @@ def test_concretize_target_ranges(root_target_range, dep_target_range, result, m
     with spack.concretize.disable_compiler_existence_check():
         spec.concretize()
     assert spec.target == spec["b"].target == result
-
-
-@pytest.mark.parametrize(
-    "versions,default,expected",
-    [
-        (["21.11", "21.9"], "21.11", False),
-        (["21.11", "21.9"], "21.9", True),
-        (["21.11", "21.9"], None, False),
-    ],
-)
-@pytest.mark.skipif(sys.platform == "win32", reason="Cray does not use windows")
-def test_cray_platform_detection(versions, default, expected, tmpdir, monkeypatch, working_env):
-    ex_path = str(tmpdir.join("fake_craype_dir"))
-    fs.mkdirp(ex_path)
-
-    with fs.working_dir(ex_path):
-        for version in versions:
-            fs.touch(version)
-        if default:
-            os.symlink(default, "default")
-
-    monkeypatch.setattr(spack.platforms.cray, "_ex_craype_dir", ex_path)
-    os.environ["MODULEPATH"] = "/opt/cray/pe"
-
-    assert spack.platforms.cray.Cray.detect() == expected

lib/spack/spack/test/build_environment.py

@@ -556,24 +556,6 @@ def test_build_jobs_defaults():
     )
 
 
-def test_dirty_disable_module_unload(config, mock_packages, working_env, mock_module_cmd):
-    """Test that on CRAY platform 'module unload' is not called if the 'dirty'
-    option is on.
-    """
-    s = spack.spec.Spec("a").concretized()
-
-    # If called with "dirty" we don't unload modules, so no calls to the
-    # `module` function on Cray
-    spack.build_environment.setup_package(s.package, dirty=True)
-    assert not mock_module_cmd.calls
-
-    # If called without "dirty" we unload modules on Cray
-    spack.build_environment.setup_package(s.package, dirty=False)
-    assert mock_module_cmd.calls
-    assert any(("unload", "cray-libsci") == item[0] for item in mock_module_cmd.calls)
-    assert any(("unload", "cray-mpich") == item[0] for item in mock_module_cmd.calls)
-
-
 class TestModuleMonkeyPatcher:
     def test_getting_attributes(self, default_mock_concretization):
         s = default_mock_concretization("libelf")

lib/spack/spack/test/buildtask.py

@@ -12,21 +12,21 @@
 
 def test_build_task_errors(install_mockery):
     with pytest.raises(ValueError, match="must be a package"):
-        inst.BuildTask("abc", None, False, 0, 0, 0, [])
+        inst.BuildTask("abc", None, False, 0, 0, 0, set())
 
     spec = spack.spec.Spec("trivial-install-test-package")
     pkg_cls = spack.repo.PATH.get_pkg_class(spec.name)
     with pytest.raises(ValueError, match="must have a concrete spec"):
-        inst.BuildTask(pkg_cls(spec), None, False, 0, 0, 0, [])
+        inst.BuildTask(pkg_cls(spec), None, False, 0, 0, 0, set())
 
     spec.concretize()
     assert spec.concrete
     with pytest.raises(ValueError, match="must have a build request"):
-        inst.BuildTask(spec.package, None, False, 0, 0, 0, [])
+        inst.BuildTask(spec.package, None, False, 0, 0, 0, set())
 
     request = inst.BuildRequest(spec.package, {})
     with pytest.raises(inst.InstallError, match="Cannot create a build task"):
-        inst.BuildTask(spec.package, request, False, 0, 0, inst.STATUS_REMOVED, [])
+        inst.BuildTask(spec.package, request, False, 0, 0, inst.STATUS_REMOVED, set())
 
 
 def test_build_task_basics(install_mockery):
@@ -36,8 +36,8 @@ def test_build_task_basics(install_mockery):
 
     # Ensure key properties match expectations
     request = inst.BuildRequest(spec.package, {})
-    task = inst.BuildTask(spec.package, request, False, 0, 0, inst.STATUS_ADDED, [])
-    assert task.explicit  # package was "explicitly" requested
+    task = inst.BuildTask(spec.package, request, False, 0, 0, inst.STATUS_ADDED, set())
+    assert not task.explicit
     assert task.priority == len(task.uninstalled_deps)
     assert task.key == (task.priority, task.sequence)
 
@@ -58,7 +58,7 @@ def test_build_task_strings(install_mockery):
 
     # Ensure key properties match expectations
     request = inst.BuildRequest(spec.package, {})
-    task = inst.BuildTask(spec.package, request, False, 0, 0, inst.STATUS_ADDED, [])
+    task = inst.BuildTask(spec.package, request, False, 0, 0, inst.STATUS_ADDED, set())
 
     # Cover __repr__
     irep = task.__repr__()

lib/spack/spack/test/cmd/dev_build.py

@@ -125,18 +125,8 @@ def print_spack_cc(*args):
     print(os.environ.get("CC", ""))
 
 
-# `module unload cray-libsci` in test environment causes failure
-# It does not fail for actual installs
-# build_environment.py imports module directly, so we monkeypatch it there
-# rather than in module_cmd
-def mock_module_noop(*args):
-    pass
-
-
 def test_dev_build_drop_in(tmpdir, mock_packages, monkeypatch, install_mockery, working_env):
     monkeypatch.setattr(os, "execvp", print_spack_cc)
-    monkeypatch.setattr(spack.build_environment, "module", mock_module_noop)
-
     with tmpdir.as_cwd():
         output = dev_build("-b", "edit", "--drop-in", "sh", "dev-build-test-install@0.0.0")
         assert "lib/spack/env" in output

lib/spack/spack/test/compilers/detection.py

@@ -3,12 +3,8 @@
 #
 # SPDX-License-Identifier: (Apache-2.0 OR MIT)
 """Test detection of compiler version"""
-import os
-
 import pytest
 
-import llnl.util.filesystem as fs
-
 import spack.compilers.aocc
 import spack.compilers.arm
 import spack.compilers.cce
@@ -23,7 +19,6 @@
 import spack.compilers.xl
 import spack.compilers.xl_r
 import spack.util.module_cmd
-from spack.operating_systems.cray_frontend import CrayFrontend
 
 
 @pytest.mark.parametrize(
@@ -413,48 +408,6 @@ def test_xl_version_detection(version_str, expected_version):
     assert version == expected_version
 
 
-@pytest.mark.not_on_windows("Not supported on Windows (yet)")
-@pytest.mark.parametrize(
-    "compiler,version",
-    [
-        ("gcc", "8.1.0"),
-        ("gcc", "1.0.0-foo"),
-        ("pgi", "19.1"),
-        ("pgi", "19.1a"),
-        ("intel", "9.0.0"),
-        ("intel", "0.0.0-foobar"),
-        # ('oneapi', '2021.1'),
-        # ('oneapi', '2021.1-foobar')
-    ],
-)
-def test_cray_frontend_compiler_detection(compiler, version, tmpdir, monkeypatch, working_env):
-    """Test that the Cray frontend properly finds compilers form modules"""
-    # setup the fake compiler directory
-    compiler_dir = tmpdir.join(compiler)
-    compiler_exe = compiler_dir.join("cc").ensure()
-    fs.set_executable(str(compiler_exe))
-
-    # mock modules
-    def _module(cmd, *args):
-        module_name = "%s/%s" % (compiler, version)
-        module_contents = "prepend-path PATH %s" % compiler_dir
-        if cmd == "avail":
-            return module_name if compiler in args[0] else ""
-        if cmd == "show":
-            return module_contents if module_name in args else ""
-
-    monkeypatch.setattr(spack.operating_systems.cray_frontend, "module", _module)
-
-    # remove PATH variable
-    os.environ.pop("PATH", None)
-
-    # get a CrayFrontend object
-    cray_fe_os = CrayFrontend()
-
-    paths = cray_fe_os.compiler_search_paths
-    assert paths == [str(compiler_dir)]
-
-
 @pytest.mark.parametrize(
     "version_str,expected_version",
     [

lib/spack/spack/test/concretize.py

@@ -28,7 +28,7 @@
 import spack.variant as vt
 from spack.concretize import find_spec
 from spack.spec import CompilerSpec, Spec
-from spack.version import Version, ver
+from spack.version import Version, VersionList, ver
 
 
 def check_spec(abstract, concrete):
@@ -2570,6 +2570,29 @@ def test_can_reuse_concrete_externals_for_dependents(self, mutable_config, tmp_p
         sombrero = result.specs[0]
         assert sombrero["externaltool"].dag_hash() == external_spec.dag_hash()
 
+    @pytest.mark.only_clingo("Original concretizer cannot reuse")
+    def test_cannot_reuse_host_incompatible_libc(self):
+        """Test whether reuse concretization correctly fails to reuse a spec with a host
+        incompatible libc."""
+        if not spack.solver.asp.using_libc_compatibility():
+            pytest.skip("This test requires libc nodes")
+
+        # We install b@1 ^glibc@2.30, and b@0 ^glibc@2.28. The former is not host compatible, the
+        # latter is.
+        fst = Spec("b@1").concretized()
+        fst._mark_concrete(False)
+        fst.dependencies("glibc")[0].versions = VersionList(["=2.30"])
+        fst._mark_concrete(True)
+        snd = Spec("b@0").concretized()
+
+        # The spec b@1 ^glibc@2.30 is "more optimal" than b@0 ^glibc@2.28, but due to glibc
+        # incompatibility, it should not be reused.
+        solver = spack.solver.asp.Solver()
+        setup = spack.solver.asp.SpackSolverSetup()
+        result, _, _ = solver.driver.solve(setup, [Spec("b")], reuse=[fst, snd])
+        assert len(result.specs) == 1
+        assert result.specs[0] == snd
+
 
 @pytest.fixture()
 def duplicates_test_repository():

lib/spack/spack/test/config.py

@@ -492,7 +492,7 @@ def test_substitute_date(mock_low_high_config):
     ],
 )
 def test_parse_install_tree(config_settings, expected, mutable_config):
-    expected_root = expected[0] or spack.store.DEFAULT_INSTALL_TREE_ROOT
+    expected_root = expected[0] or mutable_config.get("config:install_tree:root")
     expected_unpadded_root = expected[1] or expected_root
     expected_proj = expected[2] or spack.directory_layout.default_projections
 
@@ -575,7 +575,7 @@ def change_fn(self, section):
     ],
 )
 def test_parse_install_tree_padded(config_settings, expected, mutable_config):
-    expected_root = expected[0] or spack.store.DEFAULT_INSTALL_TREE_ROOT
+    expected_root = expected[0] or mutable_config.get("config:install_tree:root")
     expected_unpadded_root = expected[1] or expected_root
     expected_proj = expected[2] or spack.directory_layout.default_projections
 
@@ -761,25 +761,20 @@ def test_internal_config_from_data():
     assert config.get("config:checksum", scope="higher") is True
 
 
-def test_keys_are_ordered():
+def test_keys_are_ordered(configuration_dir):
     """Test that keys in Spack YAML files retain their order from the file."""
     expected_order = (
-        "bin",
-        "man",
-        "share/man",
-        "share/aclocal",
-        "lib",
-        "lib64",
-        "include",
-        "lib/pkgconfig",
-        "lib64/pkgconfig",
-        "share/pkgconfig",
-        "",
+        "./bin",
+        "./man",
+        "./share/man",
+        "./share/aclocal",
+        "./lib/pkgconfig",
+        "./lib64/pkgconfig",
+        "./share/pkgconfig",
+        "./",
     )
 
-    config_scope = spack.config.ConfigScope(
-        "modules", os.path.join(spack.paths.test_path, "data", "config")
-    )
+    config_scope = spack.config.ConfigScope("modules", configuration_dir.join("site"))
 
     data = config_scope.get_section("modules")
 

lib/spack/spack/test/conftest.py

@@ -12,6 +12,7 @@
 import json
 import os
 import os.path
+import pathlib
 import re
 import shutil
 import stat
@@ -32,6 +33,7 @@
 from llnl.util.filesystem import copy_tree, mkdirp, remove_linked_tree, touchp, working_dir
 
 import spack.binary_distribution
+import spack.bootstrap.core
 import spack.caches
 import spack.cmd.buildcache
 import spack.compiler
@@ -682,36 +684,34 @@ def configuration_dir(tmpdir_factory, linux_os):
     directory path.
     """
     tmpdir = tmpdir_factory.mktemp("configurations")
+    install_tree_root = tmpdir_factory.mktemp("opt")
+    modules_root = tmpdir_factory.mktemp("share")
+    tcl_root = modules_root.ensure("modules", dir=True)
+    lmod_root = modules_root.ensure("lmod", dir=True)
 
     # <test_path>/data/config has mock config yaml files in it
     # copy these to the site config.
-    test_config = py.path.local(spack.paths.test_path).join("data", "config")
-    test_config.copy(tmpdir.join("site"))
+    test_config = pathlib.Path(spack.paths.test_path) / "data" / "config"
+    shutil.copytree(test_config, tmpdir.join("site"))
 
     # Create temporary 'defaults', 'site' and 'user' folders
     tmpdir.ensure("user", dir=True)
 
-    # Slightly modify config.yaml and compilers.yaml
-    if sys.platform == "win32":
-        locks = False
-    else:
-        locks = True
-
+    # Fill out config.yaml, compilers.yaml and modules.yaml templates.
     solver = os.environ.get("SPACK_TEST_SOLVER", "clingo")
-    config_yaml = test_config.join("config.yaml")
-    modules_root = tmpdir_factory.mktemp("share")
-    tcl_root = modules_root.ensure("modules", dir=True)
-    lmod_root = modules_root.ensure("lmod", dir=True)
-    content = "".join(config_yaml.read()).format(solver, locks, str(tcl_root), str(lmod_root))
-    t = tmpdir.join("site", "config.yaml")
-    t.write(content)
+    locks = sys.platform != "win32"
+    config = tmpdir.join("site", "config.yaml")
+    config_template = test_config / "config.yaml"
+    config.write(config_template.read_text().format(install_tree_root, solver, locks))
 
-    compilers_yaml = test_config.join("compilers.yaml")
-    content = "".join(compilers_yaml.read()).format(
-        linux_os=linux_os, target=str(archspec.cpu.host().family)
-    )
-    t = tmpdir.join("site", "compilers.yaml")
-    t.write(content)
+    target = str(archspec.cpu.host().family)
+    compilers = tmpdir.join("site", "compilers.yaml")
+    compilers_template = test_config / "compilers.yaml"
+    compilers.write(compilers_template.read_text().format(linux_os=linux_os, target=target))
+
+    modules = tmpdir.join("site", "modules.yaml")
+    modules_template = test_config / "modules.yaml"
+    modules.write(modules_template.read_text().format(tcl_root, lmod_root))
     yield tmpdir
 
 
@@ -1702,7 +1702,7 @@ def _factory(name, output, subdir=("bin",)):
         executable_path = executable_dir / name
         if sys.platform == "win32":
             executable_path = executable_dir / (name + ".bat")
-        executable_path.write_text(f"{ shebang }{ output }\n")
+        executable_path.write_text(f"{shebang}{output}\n")
         executable_path.chmod(0o755)
         return executable_path
 

lib/spack/spack/test/data/config/concretizer.yaml

@@ -1,5 +1,5 @@
 concretizer:
-  reuse: True
+  reuse: true
   targets:
     granularity: microarchitectures
     host_compatible: false

lib/spack/spack/test/data/config/config.yaml

@@ -1,6 +1,6 @@
 config:
   install_tree:
-    root: $spack/opt/spack
+    root: {0}
   template_dirs:
   - $spack/share/spack/templates
   - $spack/lib/spack/spack/test/data/templates
@@ -13,5 +13,5 @@ config:
   ssl_certs: $SSL_CERT_FILE
   checksum: true
   dirty: false
-  concretizer: {0}
-  locks: {1}
+  concretizer: {1}
+  locks: {2}

lib/spack/spack/test/data/config/modules.yaml

@@ -14,29 +14,25 @@
 #   ~/.spack/modules.yaml
 # -------------------------------------------------------------------------
 modules:
-  default: {}
   prefix_inspections:
-    bin:
-      - PATH
-    man:
-      - MANPATH
-    share/man:
-      - MANPATH
-    share/aclocal:
-      - ACLOCAL_PATH
-    lib:
-      - LIBRARY_PATH
-      - LD_LIBRARY_PATH
-    lib64:
-      - LIBRARY_PATH
-      - LD_LIBRARY_PATH
-    include:
-      - CPATH
-    lib/pkgconfig:
-      - PKG_CONFIG_PATH
-    lib64/pkgconfig:
-      - PKG_CONFIG_PATH
-    share/pkgconfig:
-      - PKG_CONFIG_PATH
-    '':
-      - CMAKE_PREFIX_PATH
+    ./bin: [PATH]
+    ./man: [MANPATH]
+    ./share/man: [MANPATH]    
+    ./share/aclocal: [ACLOCAL_PATH]
+    ./lib/pkgconfig: [PKG_CONFIG_PATH]
+    ./lib64/pkgconfig: [PKG_CONFIG_PATH]
+    ./share/pkgconfig: [PKG_CONFIG_PATH]
+    ./: [CMAKE_PREFIX_PATH]
+  default:
+    roots:
+     tcl: {0}
+     lmod: {1}
+    enable: []
+    tcl:
+      all:
+        autoload: direct
+    lmod:
+      all:
+        autoload: direct
+      hierarchy:
+        - mpi

lib/spack/spack/test/installer.py

@@ -7,6 +7,7 @@
 import os
 import shutil
 import sys
+from typing import List, Optional, Union
 
 import py
 import pytest
@@ -44,12 +45,10 @@ def _mock_repo(root, namespace):
     repodir.ensure(spack.repo.packages_dir_name, dir=True)
     yaml = repodir.join("repo.yaml")
     yaml.write(
-        """
+        f"""
 repo:
-   namespace: {0}
-""".format(
-            namespace
-        )
+   namespace: {namespace}
+"""
     )
 
 
@@ -73,53 +72,21 @@ def _true(*args, **kwargs):
     return True
 
 
-def create_build_task(pkg, install_args={}):
-    """
-    Create a built task for the given (concretized) package
-
-    Args:
-        pkg (spack.package_base.PackageBase): concretized package associated with
-                                              the task
-        install_args (dict): dictionary of kwargs (or install args)
-
-    Return:
-        (BuildTask) A basic package build task
-    """
-    request = inst.BuildRequest(pkg, install_args)
-    return inst.BuildTask(pkg, request, False, 0, 0, inst.STATUS_ADDED, [])
+def create_build_task(
+    pkg: spack.package_base.PackageBase, install_args: Optional[dict] = None
+) -> inst.BuildTask:
+    request = inst.BuildRequest(pkg, {} if install_args is None else install_args)
+    return inst.BuildTask(pkg, request, False, 0, 0, inst.STATUS_ADDED, set())
 
 
-def create_installer(installer_args):
-    """
-    Create an installer using the concretized spec for each arg
-
-    Args:
-        installer_args (list): the list of (spec name, kwargs) tuples
-
-    Return:
-        spack.installer.PackageInstaller: the associated package installer
-    """
-    const_arg = [(spec.package, kwargs) for spec, kwargs in installer_args]
-    return inst.PackageInstaller(const_arg)
-
-
-def installer_args(spec_names, kwargs={}):
-    """Return a the installer argument with each spec paired with kwargs
-
-    Args:
-        spec_names (list): list of spec names
-        kwargs (dict or None): install arguments to apply to all of the specs
-
-    Returns:
-        list: list of (spec, kwargs), the installer constructor argument
-    """
-    arg = []
-    for name in spec_names:
-        spec = spack.spec.Spec(name)
-        spec.concretize()
-        assert spec.concrete
-        arg.append((spec, kwargs))
-    return arg
+def create_installer(
+    specs: Union[List[str], List[spack.spec.Spec]], install_args: Optional[dict] = None
+) -> inst.PackageInstaller:
+    """Create an installer instance for a list of specs or package names that will be
+    concretized."""
+    _specs = [spack.spec.Spec(s).concretized() if isinstance(s, str) else s for s in specs]
+    _install_args = {} if install_args is None else install_args
+    return inst.PackageInstaller([spec.package for spec in _specs], _install_args)
 
 
 @pytest.mark.parametrize(
@@ -240,8 +207,7 @@ def test_try_install_from_binary_cache(install_mockery, mock_packages, monkeypat
 
 
 def test_installer_repr(install_mockery):
-    const_arg = installer_args(["trivial-install-test-package"], {})
-    installer = create_installer(const_arg)
+    installer = create_installer(["trivial-install-test-package"])
 
     irep = installer.__repr__()
     assert irep.startswith(installer.__class__.__name__)
@@ -250,8 +216,7 @@ def test_installer_repr(install_mockery):
 
 
 def test_installer_str(install_mockery):
-    const_arg = installer_args(["trivial-install-test-package"], {})
-    installer = create_installer(const_arg)
+    installer = create_installer(["trivial-install-test-package"])
 
     istr = str(installer)
     assert "#tasks=0" in istr
@@ -296,8 +261,7 @@ def _mock_installed(self):
     builder.add_package("f")
 
     with spack.repo.use_repositories(builder.root):
-        const_arg = installer_args(["a"], {})
-        installer = create_installer(const_arg)
+        installer = create_installer(["a"])
 
         installer._init_queue()
 
@@ -331,8 +295,7 @@ def test_check_last_phase_error(install_mockery):
 
 
 def test_installer_ensure_ready_errors(install_mockery, monkeypatch):
-    const_arg = installer_args(["trivial-install-test-package"], {})
-    installer = create_installer(const_arg)
+    installer = create_installer(["trivial-install-test-package"])
     spec = installer.build_requests[0].pkg.spec
 
     fmt = r"cannot be installed locally.*{0}"
@@ -366,8 +329,7 @@ def test_ensure_locked_err(install_mockery, monkeypatch, tmpdir, capsys):
     def _raise(lock, timeout=None):
         raise RuntimeError(mock_err_msg)
 
-    const_arg = installer_args(["trivial-install-test-package"], {})
-    installer = create_installer(const_arg)
+    installer = create_installer(["trivial-install-test-package"])
     spec = installer.build_requests[0].pkg.spec
 
     monkeypatch.setattr(ulk.Lock, "acquire_read", _raise)
@@ -382,8 +344,7 @@ def _raise(lock, timeout=None):
 
 def test_ensure_locked_have(install_mockery, tmpdir, capsys):
     """Test _ensure_locked when already have lock."""
-    const_arg = installer_args(["trivial-install-test-package"], {})
-    installer = create_installer(const_arg)
+    installer = create_installer(["trivial-install-test-package"], {})
     spec = installer.build_requests[0].pkg.spec
     pkg_id = inst.package_id(spec)
 
@@ -419,8 +380,7 @@ def test_ensure_locked_have(install_mockery, tmpdir, capsys):
 @pytest.mark.parametrize("lock_type,reads,writes", [("read", 1, 0), ("write", 0, 1)])
 def test_ensure_locked_new_lock(install_mockery, tmpdir, lock_type, reads, writes):
     pkg_id = "a"
-    const_arg = installer_args([pkg_id], {})
-    installer = create_installer(const_arg)
+    installer = create_installer([pkg_id], {})
     spec = installer.build_requests[0].pkg.spec
     with tmpdir.as_cwd():
         ltype, lock = installer._ensure_locked(lock_type, spec.package)
@@ -439,8 +399,7 @@ def _pl(db, spec, timeout):
         return lock
 
     pkg_id = "a"
-    const_arg = installer_args([pkg_id], {})
-    installer = create_installer(const_arg)
+    installer = create_installer([pkg_id], {})
     spec = installer.build_requests[0].pkg.spec
 
     monkeypatch.setattr(spack.database.SpecLocker, "lock", _pl)
@@ -510,7 +469,7 @@ def _conc_spec(compiler):
 
 def test_update_tasks_for_compiler_packages_as_compiler(mock_packages, config, monkeypatch):
     spec = spack.spec.Spec("trivial-install-test-package").concretized()
-    installer = inst.PackageInstaller([(spec.package, {})])
+    installer = inst.PackageInstaller([spec.package], {})
 
     # Add a task to the queue
     installer._add_init_task(spec.package, installer.build_requests[0], False, {})
@@ -694,8 +653,7 @@ def test_check_deps_status_install_failure(install_mockery):
     for dep in s.traverse(root=False):
         spack.store.STORE.failure_tracker.mark(dep)
 
-    const_arg = installer_args(["a"], {})
-    installer = create_installer(const_arg)
+    installer = create_installer(["a"], {})
     request = installer.build_requests[0]
 
     with pytest.raises(inst.InstallError, match="install failure"):
@@ -703,8 +661,7 @@ def test_check_deps_status_install_failure(install_mockery):
 
 
 def test_check_deps_status_write_locked(install_mockery, monkeypatch):
-    const_arg = installer_args(["a"], {})
-    installer = create_installer(const_arg)
+    installer = create_installer(["a"], {})
     request = installer.build_requests[0]
 
     # Ensure the lock is not acquired
@@ -715,8 +672,7 @@ def test_check_deps_status_write_locked(install_mockery, monkeypatch):
 
 
 def test_check_deps_status_external(install_mockery, monkeypatch):
-    const_arg = installer_args(["a"], {})
-    installer = create_installer(const_arg)
+    installer = create_installer(["a"], {})
     request = installer.build_requests[0]
 
     # Mock the dependencies as external so assumed to be installed
@@ -728,8 +684,7 @@ def test_check_deps_status_external(install_mockery, monkeypatch):
 
 
 def test_check_deps_status_upstream(install_mockery, monkeypatch):
-    const_arg = installer_args(["a"], {})
-    installer = create_installer(const_arg)
+    installer = create_installer(["a"], {})
     request = installer.build_requests[0]
 
     # Mock the known dependencies as installed upstream
@@ -747,8 +702,7 @@ def _pkgs(compiler, architecture, pkgs):
         spec = spack.spec.Spec("mpi").concretized()
         return [(spec.package, True)]
 
-    const_arg = installer_args(["trivial-install-test-package"], {})
-    installer = create_installer(const_arg)
+    installer = create_installer(["trivial-install-test-package"], {})
     request = installer.build_requests[0]
     all_deps = defaultdict(set)
 
@@ -763,8 +717,7 @@ def _pkgs(compiler, architecture, pkgs):
 
 def test_prepare_for_install_on_installed(install_mockery, monkeypatch):
     """Test of _prepare_for_install's early return for installed task path."""
-    const_arg = installer_args(["dependent-install"], {})
-    installer = create_installer(const_arg)
+    installer = create_installer(["dependent-install"], {})
     request = installer.build_requests[0]
 
     install_args = {"keep_prefix": True, "keep_stage": True, "restage": False}
@@ -779,8 +732,7 @@ def test_installer_init_requests(install_mockery):
     """Test of installer initial requests."""
     spec_name = "dependent-install"
     with spack.config.override("config:install_missing_compilers", True):
-        const_arg = installer_args([spec_name], {})
-        installer = create_installer(const_arg)
+        installer = create_installer([spec_name], {})
 
         # There is only one explicit request in this case
         assert len(installer.build_requests) == 1
@@ -789,8 +741,7 @@ def test_installer_init_requests(install_mockery):
 
 
 def test_install_task_use_cache(install_mockery, monkeypatch):
-    const_arg = installer_args(["trivial-install-test-package"], {})
-    installer = create_installer(const_arg)
+    installer = create_installer(["trivial-install-test-package"], {})
     request = installer.build_requests[0]
     task = create_build_task(request.pkg)
 
@@ -805,8 +756,7 @@ def test_install_task_add_compiler(install_mockery, monkeypatch, capfd):
     def _add(_compilers):
         tty.msg(config_msg)
 
-    const_arg = installer_args(["a"], {})
-    installer = create_installer(const_arg)
+    installer = create_installer(["a"], {})
     task = create_build_task(installer.build_requests[0].pkg)
     task.compiler = True
 
@@ -825,8 +775,7 @@ def _add(_compilers):
 
 def test_release_lock_write_n_exception(install_mockery, tmpdir, capsys):
     """Test _release_lock for supposed write lock with exception."""
-    const_arg = installer_args(["trivial-install-test-package"], {})
-    installer = create_installer(const_arg)
+    installer = create_installer(["trivial-install-test-package"], {})
 
     pkg_id = "test"
     with tmpdir.as_cwd():
@@ -843,8 +792,7 @@ def test_release_lock_write_n_exception(install_mockery, tmpdir, capsys):
 @pytest.mark.parametrize("installed", [True, False])
 def test_push_task_skip_processed(install_mockery, installed):
     """Test to ensure skip re-queueing a processed package."""
-    const_arg = installer_args(["a"], {})
-    installer = create_installer(const_arg)
+    installer = create_installer(["a"], {})
     assert len(list(installer.build_tasks)) == 0
 
     # Mark the package as installed OR failed
@@ -861,8 +809,7 @@ def test_push_task_skip_processed(install_mockery, installed):
 
 def test_requeue_task(install_mockery, capfd):
     """Test to ensure cover _requeue_task."""
-    const_arg = installer_args(["a"], {})
-    installer = create_installer(const_arg)
+    installer = create_installer(["a"], {})
     task = create_build_task(installer.build_requests[0].pkg)
 
     # temporarily set tty debug messages on so we can test output
@@ -892,8 +839,7 @@ def _mktask(pkg):
     def _rmtask(installer, pkg_id):
         raise RuntimeError("Raise an exception to test except path")
 
-    const_arg = installer_args(["a"], {})
-    installer = create_installer(const_arg)
+    installer = create_installer(["a"], {})
     spec = installer.build_requests[0].pkg.spec
 
     # Cover task removal happy path
@@ -922,8 +868,7 @@ def _chgrp(path, group, follow_symlinks=True):
     monkeypatch.setattr(prefs, "get_package_group", _get_group)
     monkeypatch.setattr(fs, "chgrp", _chgrp)
 
-    const_arg = installer_args(["trivial-install-test-package"], {})
-    installer = create_installer(const_arg)
+    installer = create_installer(["trivial-install-test-package"], {})
     spec = installer.build_requests[0].pkg.spec
 
     fs.touchp(spec.prefix)
@@ -949,8 +894,7 @@ def test_cleanup_failed_err(install_mockery, tmpdir, monkeypatch, capsys):
     def _raise_except(lock):
         raise RuntimeError(msg)
 
-    const_arg = installer_args(["trivial-install-test-package"], {})
-    installer = create_installer(const_arg)
+    installer = create_installer(["trivial-install-test-package"], {})
 
     monkeypatch.setattr(lk.Lock, "release_write", _raise_except)
     pkg_id = "test"
@@ -966,8 +910,7 @@ def _raise_except(lock):
 
 def test_update_failed_no_dependent_task(install_mockery):
     """Test _update_failed with missing dependent build tasks."""
-    const_arg = installer_args(["dependent-install"], {})
-    installer = create_installer(const_arg)
+    installer = create_installer(["dependent-install"], {})
     spec = installer.build_requests[0].pkg.spec
 
     for dep in spec.traverse(root=False):
@@ -978,8 +921,7 @@ def test_update_failed_no_dependent_task(install_mockery):
 
 def test_install_uninstalled_deps(install_mockery, monkeypatch, capsys):
     """Test install with uninstalled dependencies."""
-    const_arg = installer_args(["dependent-install"], {})
-    installer = create_installer(const_arg)
+    installer = create_installer(["dependent-install"], {})
 
     # Skip the actual installation and any status updates
     monkeypatch.setattr(inst.PackageInstaller, "_install_task", _noop)
@@ -996,8 +938,7 @@ def test_install_uninstalled_deps(install_mockery, monkeypatch, capsys):
 
 def test_install_failed(install_mockery, monkeypatch, capsys):
     """Test install with failed install."""
-    const_arg = installer_args(["b"], {})
-    installer = create_installer(const_arg)
+    installer = create_installer(["b"], {})
 
     # Make sure the package is identified as failed
     monkeypatch.setattr(spack.database.FailureTracker, "has_failed", _true)
@@ -1012,8 +953,7 @@ def test_install_failed(install_mockery, monkeypatch, capsys):
 
 def test_install_failed_not_fast(install_mockery, monkeypatch, capsys):
     """Test install with failed install."""
-    const_arg = installer_args(["a"], {"fail_fast": False})
-    installer = create_installer(const_arg)
+    installer = create_installer(["a"], {"fail_fast": False})
 
     # Make sure the package is identified as failed
     monkeypatch.setattr(spack.database.FailureTracker, "has_failed", _true)
@@ -1037,8 +977,7 @@ def _interrupt(installer, task, install_status, **kwargs):
         else:
             installer.installed.add(task.pkg.name)
 
-    const_arg = installer_args([spec_name], {})
-    installer = create_installer(const_arg)
+    installer = create_installer([spec_name], {})
 
     # Raise a KeyboardInterrupt error to trigger early termination
     monkeypatch.setattr(inst.PackageInstaller, "_install_task", _interrupt)
@@ -1064,8 +1003,7 @@ def _install(installer, task, install_status, **kwargs):
         else:
             installer.installed.add(task.pkg.name)
 
-    const_arg = installer_args([spec_name], {})
-    installer = create_installer(const_arg)
+    installer = create_installer([spec_name], {})
 
     # Raise a KeyboardInterrupt error to trigger early termination
     monkeypatch.setattr(inst.PackageInstaller, "_install_task", _install)
@@ -1091,8 +1029,7 @@ def _install(installer, task, install_status, **kwargs):
         else:
             installer.installed.add(task.pkg.name)
 
-    const_arg = installer_args([spec_name, "a"], {})
-    installer = create_installer(const_arg)
+    installer = create_installer([spec_name, "a"], {})
 
     # Raise a KeyboardInterrupt error to trigger early termination
     monkeypatch.setattr(inst.PackageInstaller, "_install_task", _install)
@@ -1106,25 +1043,21 @@ def _install(installer, task, install_status, **kwargs):
 
 def test_install_fail_fast_on_detect(install_mockery, monkeypatch, capsys):
     """Test fail_fast install when an install failure is detected."""
-    const_arg = installer_args(["b"], {"fail_fast": False})
-    const_arg.extend(installer_args(["c"], {"fail_fast": True}))
-    installer = create_installer(const_arg)
-    pkg_ids = [inst.package_id(spec) for spec, _ in const_arg]
+    b, c = spack.spec.Spec("b").concretized(), spack.spec.Spec("c").concretized()
+    b_id, c_id = inst.package_id(b), inst.package_id(c)
+
+    installer = create_installer([b, c], {"fail_fast": True})
 
     # Make sure all packages are identified as failed
-    #
-    # This will prevent b from installing, which will cause the build of a
-    # to be skipped.
+    # This will prevent b from installing, which will cause the build of c to be skipped.
     monkeypatch.setattr(spack.database.FailureTracker, "has_failed", _true)
 
     with pytest.raises(inst.InstallError, match="after first install failure"):
         installer.install()
 
-    assert pkg_ids[0] in installer.failed, "Expected b to be marked as failed"
-    assert pkg_ids[1] not in installer.failed, "Expected no attempt to install c"
-
-    out = capsys.readouterr()[1]
-    assert "{0} failed to install".format(pkg_ids[0]) in out
+    assert b_id in installer.failed, "Expected b to be marked as failed"
+    assert c_id not in installer.failed, "Expected no attempt to install c"
+    assert f"{b_id} failed to install" in capsys.readouterr().err
 
 
 def _test_install_fail_fast_on_except_patch(installer, **kwargs):
@@ -1137,8 +1070,7 @@ def _test_install_fail_fast_on_except_patch(installer, **kwargs):
 @pytest.mark.disable_clean_stage_check
 def test_install_fail_fast_on_except(install_mockery, monkeypatch, capsys):
     """Test fail_fast install when an install failure results from an error."""
-    const_arg = installer_args(["a"], {"fail_fast": True})
-    installer = create_installer(const_arg)
+    installer = create_installer(["a"], {"fail_fast": True})
 
     # Raise a non-KeyboardInterrupt exception to trigger fast failure.
     #
@@ -1161,8 +1093,7 @@ def test_install_lock_failures(install_mockery, monkeypatch, capfd):
     def _requeued(installer, task, install_status):
         tty.msg("requeued {0}".format(task.pkg.spec.name))
 
-    const_arg = installer_args(["b"], {})
-    installer = create_installer(const_arg)
+    installer = create_installer(["b"], {})
 
     # Ensure never acquire a lock
     monkeypatch.setattr(inst.PackageInstaller, "_ensure_locked", _not_locked)
@@ -1181,20 +1112,19 @@ def _requeued(installer, task, install_status):
 
 def test_install_lock_installed_requeue(install_mockery, monkeypatch, capfd):
     """Cover basic install handling for installed package."""
-    const_arg = installer_args(["b"], {})
-    b, _ = const_arg[0]
-    installer = create_installer(const_arg)
+    b = spack.spec.Spec("b").concretized()
     b_pkg_id = inst.package_id(b)
+    installer = create_installer([b])
 
     def _prep(installer, task):
         installer.installed.add(b_pkg_id)
-        tty.msg("{0} is installed".format(b_pkg_id))
+        tty.msg(f"{b_pkg_id} is installed")
 
         # also do not allow the package to be locked again
         monkeypatch.setattr(inst.PackageInstaller, "_ensure_locked", _not_locked)
 
     def _requeued(installer, task, install_status):
-        tty.msg("requeued {0}".format(inst.package_id(task.pkg.spec)))
+        tty.msg(f"requeued {inst.package_id(task.pkg.spec)}")
 
     # Flag the package as installed
     monkeypatch.setattr(inst.PackageInstaller, "_prepare_for_install", _prep)
@@ -1207,9 +1137,8 @@ def _requeued(installer, task, install_status):
 
     assert b_pkg_id not in installer.installed
 
-    out = capfd.readouterr()[0]
     expected = ["is installed", "read locked", "requeued"]
-    for exp, ln in zip(expected, out.split("\n")):
+    for exp, ln in zip(expected, capfd.readouterr().out.splitlines()):
         assert exp in ln
 
 
@@ -1237,8 +1166,7 @@ def _requeued(installer, task, install_status):
     # Ensure don't continually requeue the task
     monkeypatch.setattr(inst.PackageInstaller, "_requeue_task", _requeued)
 
-    const_arg = installer_args(["b"], {})
-    installer = create_installer(const_arg)
+    installer = create_installer(["b"], {})
 
     with pytest.raises(inst.InstallError, match="request failed"):
         installer.install()
@@ -1253,25 +1181,19 @@ def _requeued(installer, task, install_status):
 
 def test_install_skip_patch(install_mockery, mock_fetch):
     """Test the path skip_patch install path."""
-    spec_name = "b"
-    const_arg = installer_args([spec_name], {"fake": False, "skip_patch": True})
-    installer = create_installer(const_arg)
-
+    installer = create_installer(["b"], {"fake": False, "skip_patch": True})
     installer.install()
-
-    spec, install_args = const_arg[0]
-    assert inst.package_id(spec) in installer.installed
+    assert inst.package_id(installer.build_requests[0].pkg.spec) in installer.installed
 
 
 def test_install_implicit(install_mockery, mock_fetch):
     """Test the path skip_patch install path."""
     spec_name = "trivial-install-test-package"
-    const_arg = installer_args([spec_name], {"fake": False})
-    installer = create_installer(const_arg)
+    installer = create_installer([spec_name], {"fake": False})
     pkg = installer.build_requests[0].pkg
-    assert not create_build_task(pkg, {"explicit": False}).explicit
-    assert create_build_task(pkg, {"explicit": True}).explicit
-    assert create_build_task(pkg).explicit
+    assert not create_build_task(pkg, {"explicit": []}).explicit
+    assert create_build_task(pkg, {"explicit": [pkg.spec.dag_hash()]}).explicit
+    assert not create_build_task(pkg).explicit
 
 
 def test_overwrite_install_backup_success(temporary_store, config, mock_packages, tmpdir):
@@ -1280,8 +1202,7 @@ def test_overwrite_install_backup_success(temporary_store, config, mock_packages
     of the original prefix, and leave the original spec marked installed.
     """
     # Get a build task. TODO: refactor this to avoid calling internal methods
-    const_arg = installer_args(["b"])
-    installer = create_installer(const_arg)
+    installer = create_installer(["b"])
     installer._init_queue()
     task = installer._pop_task()
 
@@ -1341,8 +1262,7 @@ def remove(self, spec):
             self.called = True
 
     # Get a build task. TODO: refactor this to avoid calling internal methods
-    const_arg = installer_args(["b"])
-    installer = create_installer(const_arg)
+    installer = create_installer(["b"])
     installer._init_queue()
     task = installer._pop_task()
 
@@ -1375,22 +1295,20 @@ def test_term_status_line():
     x.clear()
 
 
-@pytest.mark.parametrize(
-    "explicit_args,is_explicit",
-    [({"explicit": False}, False), ({"explicit": True}, True), ({}, True)],
-)
-def test_single_external_implicit_install(install_mockery, explicit_args, is_explicit):
+@pytest.mark.parametrize("explicit", [True, False])
+def test_single_external_implicit_install(install_mockery, explicit):
     pkg = "trivial-install-test-package"
     s = spack.spec.Spec(pkg).concretized()
     s.external_path = "/usr"
-    create_installer([(s, explicit_args)]).install()
-    assert spack.store.STORE.db.get_record(pkg).explicit == is_explicit
+    args = {"explicit": [s.dag_hash()] if explicit else []}
+    create_installer([s], args).install()
+    assert spack.store.STORE.db.get_record(pkg).explicit == explicit
 
 
 def test_overwrite_install_does_install_build_deps(install_mockery, mock_fetch):
     """When overwrite installing something from sources, build deps should be installed."""
     s = spack.spec.Spec("dtrun3").concretized()
-    create_installer([(s, {})]).install()
+    create_installer([s]).install()
 
     # Verify there is a pure build dep
     edge = s.edges_to_dependencies(name="dtbuild3").pop()
@@ -1401,7 +1319,7 @@ def test_overwrite_install_does_install_build_deps(install_mockery, mock_fetch):
     build_dep.package.do_uninstall()
 
     # Overwrite install the root dtrun3
-    create_installer([(s, {"overwrite": [s.dag_hash()]})]).install()
+    create_installer([s], {"overwrite": [s.dag_hash()]}).install()
 
     # Verify that the build dep was also installed.
     assert build_dep.installed

lib/spack/spack/test/llnl/util/filesystem.py

@@ -278,8 +278,8 @@ def test_symlinks_false(self, stage):
     def test_allow_broken_symlinks(self, stage):
         """Test installing with a broken symlink."""
         with fs.working_dir(str(stage)):
-            symlink("nonexistant.txt", "source/broken", allow_broken_symlinks=True)
-            fs.install_tree("source", "dest", symlinks=True, allow_broken_symlinks=True)
+            symlink("nonexistant.txt", "source/broken")
+            fs.install_tree("source", "dest", symlinks=True)
             assert os.path.islink("dest/broken")
             assert not os.path.exists(readlink("dest/broken"))
 

lib/spack/spack/test/llnl/util/symlink.py

@@ -20,7 +20,7 @@ def test_symlink_file(tmpdir):
         fd, real_file = tempfile.mkstemp(prefix="real", suffix=".txt", dir=test_dir)
         link_file = str(tmpdir.join("link.txt"))
         assert os.path.exists(link_file) is False
-        symlink.symlink(source_path=real_file, link_path=link_file)
+        symlink.symlink(real_file, link_file)
         assert os.path.exists(link_file)
         assert symlink.islink(link_file)
 
@@ -32,11 +32,12 @@ def test_symlink_dir(tmpdir):
         real_dir = os.path.join(test_dir, "real_dir")
         link_dir = os.path.join(test_dir, "link_dir")
         os.mkdir(real_dir)
-        symlink.symlink(source_path=real_dir, link_path=link_dir)
+        symlink.symlink(real_dir, link_dir)
         assert os.path.exists(link_dir)
         assert symlink.islink(link_dir)
 
 
+@pytest.mark.skipif(sys.platform != "win32", reason="Test is only for Windows")
 def test_symlink_source_not_exists(tmpdir):
     """Test the symlink.symlink method for the case where a source path does not exist"""
     with tmpdir.as_cwd():
@@ -44,7 +45,7 @@ def test_symlink_source_not_exists(tmpdir):
         real_dir = os.path.join(test_dir, "real_dir")
         link_dir = os.path.join(test_dir, "link_dir")
         with pytest.raises(symlink.SymlinkError):
-            symlink.symlink(source_path=real_dir, link_path=link_dir, allow_broken_symlinks=False)
+            symlink._windows_symlink(real_dir, link_dir)
 
 
 def test_symlink_src_relative_to_link(tmpdir):
@@ -61,18 +62,16 @@ def test_symlink_src_relative_to_link(tmpdir):
         fd, real_file = tempfile.mkstemp(prefix="real", suffix=".txt", dir=subdir_2)
         link_file = os.path.join(subdir_1, "link.txt")
 
-        symlink.symlink(
-            source_path=f"b/{os.path.basename(real_file)}",
-            link_path=f"a/{os.path.basename(link_file)}",
-        )
+        symlink.symlink(f"b/{os.path.basename(real_file)}", f"a/{os.path.basename(link_file)}")
         assert os.path.exists(link_file)
         assert symlink.islink(link_file)
         # Check dirs
         assert not os.path.lexists(link_dir)
-        symlink.symlink(source_path="b", link_path="a/c")
+        symlink.symlink("b", "a/c")
         assert os.path.lexists(link_dir)
 
 
+@pytest.mark.skipif(sys.platform != "win32", reason="Test is only for Windows")
 def test_symlink_src_not_relative_to_link(tmpdir):
     """Test the symlink.symlink functionality where the source value does not exist relative to
     the link and not relative to the cwd. NOTE that this symlink api call is EXPECTED to raise
@@ -88,19 +87,18 @@ def test_symlink_src_not_relative_to_link(tmpdir):
         link_file = str(tmpdir.join("link.txt"))
         # Expected SymlinkError because source path does not exist relative to link path
         with pytest.raises(symlink.SymlinkError):
-            symlink.symlink(
-                source_path=f"d/{os.path.basename(real_file)}",
-                link_path=f"a/{os.path.basename(link_file)}",
-                allow_broken_symlinks=False,
+            symlink._windows_symlink(
+                f"d/{os.path.basename(real_file)}", f"a/{os.path.basename(link_file)}"
             )
         assert not os.path.exists(link_file)
         # Check dirs
         assert not os.path.lexists(link_dir)
         with pytest.raises(symlink.SymlinkError):
-            symlink.symlink(source_path="d", link_path="a/c", allow_broken_symlinks=False)
+            symlink._windows_symlink("d", "a/c")
         assert not os.path.lexists(link_dir)
 
 
+@pytest.mark.skipif(sys.platform != "win32", reason="Test is only for Windows")
 def test_symlink_link_already_exists(tmpdir):
     """Test the symlink.symlink method for the case where a link already exists"""
     with tmpdir.as_cwd():
@@ -108,10 +106,10 @@ def test_symlink_link_already_exists(tmpdir):
         real_dir = os.path.join(test_dir, "real_dir")
         link_dir = os.path.join(test_dir, "link_dir")
         os.mkdir(real_dir)
-        symlink.symlink(real_dir, link_dir, allow_broken_symlinks=False)
+        symlink._windows_symlink(real_dir, link_dir)
         assert os.path.exists(link_dir)
         with pytest.raises(symlink.SymlinkError):
-            symlink.symlink(source_path=real_dir, link_path=link_dir, allow_broken_symlinks=False)
+            symlink._windows_symlink(real_dir, link_dir)
 
 
 @pytest.mark.skipif(not symlink._windows_can_symlink(), reason="Test requires elevated privileges")
@@ -122,7 +120,7 @@ def test_symlink_win_file(tmpdir):
         test_dir = str(tmpdir)
         fd, real_file = tempfile.mkstemp(prefix="real", suffix=".txt", dir=test_dir)
         link_file = str(tmpdir.join("link.txt"))
-        symlink.symlink(source_path=real_file, link_path=link_file)
+        symlink.symlink(real_file, link_file)
         # Verify that all expected conditions are met
         assert os.path.exists(link_file)
         assert symlink.islink(link_file)
@@ -140,7 +138,7 @@ def test_symlink_win_dir(tmpdir):
         real_dir = os.path.join(test_dir, "real")
         link_dir = os.path.join(test_dir, "link")
         os.mkdir(real_dir)
-        symlink.symlink(source_path=real_dir, link_path=link_dir)
+        symlink.symlink(real_dir, link_dir)
         # Verify that all expected conditions are met
         assert os.path.exists(link_dir)
         assert symlink.islink(link_dir)

lib/spack/spack/test/operating_system.py

@@ -1,77 +0,0 @@
-# Copyright 2013-2024 Lawrence Livermore National Security, LLC and other
-# Spack Project Developers. See the top-level COPYRIGHT file for details.
-#
-# SPDX-License-Identifier: (Apache-2.0 OR MIT)
-
-import spack.operating_systems.cray_backend as cray_backend
-
-
-def test_read_cle_release_file(tmpdir, monkeypatch):
-    """test reading the Cray cle-release file"""
-    cle_release_path = tmpdir.join("cle-release")
-    with cle_release_path.open("w") as f:
-        f.write(
-            """\
-RELEASE=6.0.UP07
-BUILD=6.0.7424
-DATE=20190611
-ARCH=noarch
-NETWORK=ari
-PATCHSET=35-201906112304
-DUMMY=foo=bar
-"""
-        )
-
-    monkeypatch.setattr(cray_backend, "_cle_release_file", str(cle_release_path))
-    attrs = cray_backend.read_cle_release_file()
-
-    assert attrs["RELEASE"] == "6.0.UP07"
-    assert attrs["BUILD"] == "6.0.7424"
-    assert attrs["DATE"] == "20190611"
-    assert attrs["ARCH"] == "noarch"
-    assert attrs["NETWORK"] == "ari"
-    assert attrs["PATCHSET"] == "35-201906112304"
-    assert attrs["DUMMY"] == "foo=bar"
-
-    assert cray_backend.CrayBackend._detect_crayos_version() == 6
-
-
-def test_read_clerelease_file(tmpdir, monkeypatch):
-    """test reading the Cray clerelease file"""
-    clerelease_path = tmpdir.join("clerelease")
-    with clerelease_path.open("w") as f:
-        f.write("5.2.UP04\n")
-
-    monkeypatch.setattr(cray_backend, "_clerelease_file", str(clerelease_path))
-    v = cray_backend.read_clerelease_file()
-
-    assert v == "5.2.UP04"
-
-    assert cray_backend.CrayBackend._detect_crayos_version() == 5
-
-
-def test_cle_release_precedence(tmpdir, monkeypatch):
-    """test that cle-release file takes precedence over clerelease file."""
-    cle_release_path = tmpdir.join("cle-release")
-    clerelease_path = tmpdir.join("clerelease")
-
-    with cle_release_path.open("w") as f:
-        f.write(
-            """\
-RELEASE=6.0.UP07
-BUILD=6.0.7424
-DATE=20190611
-ARCH=noarch
-NETWORK=ari
-PATCHSET=35-201906112304
-DUMMY=foo=bar
-"""
-        )
-
-    with clerelease_path.open("w") as f:
-        f.write("5.2.UP04\n")
-
-    monkeypatch.setattr(cray_backend, "_clerelease_file", str(clerelease_path))
-    monkeypatch.setattr(cray_backend, "_cle_release_file", str(cle_release_path))
-
-    assert cray_backend.CrayBackend._detect_crayos_version() == 6

lib/spack/spack/test/traverse.py

@@ -272,6 +272,29 @@ def test_breadth_first_versus_depth_first_tree(abstract_specs_chain):
     ]
 
 
+@pytest.mark.parametrize("cover", ["nodes", "edges"])
+@pytest.mark.parametrize("depth_first", [True, False])
+def test_tree_traversal_with_key(cover, depth_first, abstract_specs_chain):
+    """Compare two multisource traversals of the same DAG. In one case the DAG consists of unique
+    Spec instances, in the second case there are identical copies of nodes and edges. Traversal
+    should be equivalent when nodes are identified by dag_hash."""
+    a = abstract_specs_chain["chain-a"]
+    c = abstract_specs_chain["chain-c"]
+    kwargs = {"cover": cover, "depth_first": depth_first}
+    dag_hash = lambda s: s.dag_hash()
+
+    # Traverse DAG spanned by a unique set of Spec instances
+    first = traverse.traverse_tree([a, c], key=id, **kwargs)
+
+    # Traverse equivalent DAG with copies of Spec instances included, keyed by dag hash.
+    second = traverse.traverse_tree([a, c.copy()], key=dag_hash, **kwargs)
+
+    # Check that the same nodes are discovered at the same depth
+    node_at_depth_first = [(depth, dag_hash(edge.spec)) for (depth, edge) in first]
+    node_at_depth_second = [(depth, dag_hash(edge.spec)) for (depth, edge) in second]
+    assert node_at_depth_first == node_at_depth_second
+
+
 def test_breadth_first_versus_depth_first_printing(abstract_specs_chain):
     """Test breadth-first versus depth-first tree printing."""
     s = abstract_specs_chain["chain-a"]

lib/spack/spack/traverse.py

@@ -563,10 +563,10 @@ def traverse_tree(
     # identical to DFS, which is much more efficient then.
     if not depth_first and cover == "edges":
         edges, parents = breadth_first_to_tree_edges(specs, deptype, key)
-        return traverse_breadth_first_tree_edges(None, edges, parents)
+        return traverse_breadth_first_tree_edges(None, edges, parents, key)
     elif not depth_first and cover == "nodes":
         edges = breadth_first_to_tree_nodes(specs, deptype, key)
-        return traverse_breadth_first_tree_nodes(None, edges)
+        return traverse_breadth_first_tree_nodes(None, edges, key)
 
     return traverse_edges(specs, order="pre", cover=cover, deptype=deptype, key=key, depth=True)
 

share/spack/gitlab/cloud_pipelines/stacks/e4s-neoverse-v2/spack.yaml

@@ -51,21 +51,21 @@ spack:
 
   specs:
   # CPU
-  - adios
-  - alquimia
-  - aml
+  # - adios
+  # - alquimia
+  # - aml
   - amrex
   - arborx
-  - argobots
+  # - argobots
   - ascent # ecp dav
   - axom
-  - bolt
-  - boost
+  # - bolt
+  # - boost
   - butterflypack
   - cabana
   - caliper
   - chai
-  - charliecloud
+  # - charliecloud
   - conduit
   - cp2k +mpi
   - datatransferkit
@@ -73,15 +73,15 @@ spack:
   - ecp-data-vis-sdk ~cuda ~rocm +adios2 +ascent +cinema +darshan +faodel +hdf5 ~paraview +pnetcdf +sz +unifyfs +veloc ~visit +vtkm +zfp  # +visit: ?
   - exaworks
   - flecsi
-  - flit
-  - flux-core
+  # - flit
+  # - flux-core
   - fortrilinos
-  - gasnet
+  # - gasnet
   - ginkgo
-  - globalarrays
-  - gmp
-  - gotcha
-  - gptune ~mpispawn
+  # - globalarrays
+  # - gmp
+  # - gotcha
+  # - gptune ~mpispawn
   - gromacs +cp2k ^cp2k +mpi +dlaf build_system=cmake
   - h5bench
   - hdf5-vol-async
@@ -110,10 +110,10 @@ spack:
   - nco
   - netlib-scalapack
   - nrm
-  - nvhpc
+  # - nvhpc
   - omega-h
   - openfoam
-  - openmpi
+  # - openmpi
   - openpmd-api
   - papi
   - papyrus
@@ -144,35 +144,35 @@ spack:
   - sundials
   - superlu
   - superlu-dist
-  - swig@4.0.2-fortran
+  # - swig@4.0.2-fortran
   - sz3
   - tasmanian
   - tau +mpi +python +syscall
   - trilinos +amesos +amesos2 +anasazi +aztec +belos +boost +epetra +epetraext +ifpack +ifpack2 +intrepid +intrepid2 +isorropia +kokkos +ml +minitensor +muelu +nox +piro +phalanx +rol +rythmos +sacado +stk +shards +shylu +stokhos +stratimikos +teko +tempus +tpetra +trilinoscouplings +zoltan +zoltan2 +superlu-dist gotype=long_long
   - turbine
-  - umap
+  # - umap
   - umpire
   - upcxx
-  - veloc
+  # - veloc
   - wannier90
   - xyce +mpi +shared +pymi +pymi_static_tpls
   # INCLUDED IN ECP DAV CPU
-  - adios2
-  - darshan-runtime
-  - darshan-util
-  - faodel
-  - hdf5
-  - libcatalyst
-  - parallel-netcdf
+  # - adios2
+  # - darshan-runtime
+  # - darshan-util
+  # - faodel
+  # - hdf5
+  # - libcatalyst
+  # - parallel-netcdf
   # - paraview
-  - py-cinemasci
-  - sz
-  - unifyfs
-  - laghos
+  # - py-cinemasci
+  # - sz
+  # - unifyfs
   # - visit                         # silo: https://github.com/spack/spack/issues/39538
-  - vtk-m
-  - zfp
+  # - vtk-m
+  # - zfp
   # --
+  - laghos
   # - bricks ~cuda                  # not respecting target=aarch64?
   # - dealii                        # slepc: make[1]: *** internal error: invalid --jobserver-auth string 'fifo:/tmp/GMfifo1313'.
   # - geopm                         # geopm: https://github.com/spack/spack/issues/38795
@@ -181,25 +181,25 @@ spack:
   # - variorum                      # variorum: https://github.com/spack/spack/issues/38786
 
   # PYTHON PACKAGES
-  - opencv +python3
-  - py-horovod
-  - py-jax
-  - py-jupyterlab
-  - py-matplotlib
-  - py-mpi4py
-  - py-notebook
-  - py-numba
-  - py-numpy
-  - py-openai
-  - py-pandas
-  - py-plotly
-  - py-pooch
-  - py-pytest
-  - py-scikit-learn
-  - py-scipy
-  - py-seaborn
-  - py-tensorflow
-  - py-torch
+  # - opencv +python3
+  # - py-horovod
+  # - py-jax
+  # - py-jupyterlab
+  # - py-matplotlib
+  # - py-mpi4py
+  # - py-notebook
+  # - py-numba
+  # - py-numpy
+  # - py-openai
+  # - py-pandas
+  # - py-plotly
+  # - py-pooch
+  # - py-pytest
+  # - py-scikit-learn
+  # - py-scipy
+  # - py-seaborn
+  # - py-tensorflow
+  # - py-torch
 
   # CUDA NOARCH
   - flux-core +cuda
@@ -210,100 +210,6 @@ spack:
   # - bricks +cuda                  # not respecting target=aarch64?
   # - legion +cuda                  # legion: needs NVIDIA driver
 
-  # CUDA 75
-  - amrex +cuda cuda_arch=75
-  - arborx +cuda cuda_arch=75 ^kokkos +wrapper
-  - cabana +cuda cuda_arch=75 ^kokkos +wrapper +cuda_lambda +cuda cuda_arch=75
-  - caliper +cuda cuda_arch=75
-  - chai +cuda cuda_arch=75 ^umpire ~shared
-  # - cp2k +mpi +cuda cuda_arch=75 # cp2k: cp2k only supports cuda_arch ('35', '37', '60', '70', '80')
-  - flecsi +cuda cuda_arch=75
-  - ginkgo +cuda cuda_arch=75
-  - gromacs +cuda cuda_arch=75
-  - heffte +cuda cuda_arch=75
-  - hpx +cuda cuda_arch=75
-  - hypre +cuda cuda_arch=75
-  - kokkos +wrapper +cuda cuda_arch=75
-  - kokkos-kernels +cuda cuda_arch=75 ^kokkos +wrapper +cuda cuda_arch=75
-  - magma +cuda cuda_arch=75
-  - mfem +cuda cuda_arch=75
-  - mgard +serial +openmp +timing +unstructured +cuda cuda_arch=75
-  - omega-h +cuda cuda_arch=75
-  - parsec +cuda cuda_arch=75
-  - petsc +cuda cuda_arch=75
-  - raja +cuda cuda_arch=75
-  - slate +cuda cuda_arch=75
-  - strumpack ~slate +cuda cuda_arch=75
-  - sundials +cuda cuda_arch=75
-  - superlu-dist +cuda cuda_arch=75
-  - tasmanian +cuda cuda_arch=75
-  - trilinos +cuda cuda_arch=75
-  - umpire ~shared +cuda cuda_arch=75
-  # INCLUDED IN ECP DAV CUDA
-  - adios2 +cuda cuda_arch=75
-  # - paraview +cuda cuda_arch=75
-  - vtk-m +cuda cuda_arch=75
-  - zfp +cuda cuda_arch=75
-  # --
-  # - ascent +cuda cuda_arch=75     # ascent: https://github.com/spack/spack/issues/38045
-  # - axom +cuda cuda_arch=75       # axom: https://github.com/spack/spack/issues/29520
-  # - cusz +cuda cuda_arch=75       # cusz: https://github.com/spack/spack/issues/38787
-  # - dealii +cuda cuda_arch=75     # slepc: make[1]: *** internal error: invalid --jobserver-auth string 'fifo:/tmp/GMfifo1313'.
-  # - ecp-data-vis-sdk +adios2 +hdf5 +vtkm +zfp +paraview +cuda cuda_arch=75  # embree: https://github.com/spack/spack/issues/39534
-  # - lammps +cuda cuda_arch=75     # lammps: needs NVIDIA driver
-  # - lbann +cuda cuda_arch=75      # lbann: https://github.com/spack/spack/issues/38788
-  # - libpressio +bitgrooming +bzip2 +fpzip +hdf5 +libdistributed +lua +openmp +python +sz +sz3 +unix +zfp +json +remote +netcdf ~cusz +mgard +cuda cuda_arch=75 # libpressio: CMake Error at CMakeLists.txt:498 (find_library): Could not find CUFile_LIBRARY using the following names: cufile ; +cusz: https://github.com/spack/spack/issues/38787
-  # - py-torch +cuda cuda_arch=75   # skipped, installed by other means
-  # - slepc +cuda cuda_arch=75      # slepc: make[1]: *** internal error: invalid --jobserver-auth string 'fifo:/tmp/GMfifo1313'.
-  # - upcxx +cuda cuda_arch=75      # upcxx: needs NVIDIA driver
-
-  # CUDA 80
-  - amrex +cuda cuda_arch=80
-  - arborx +cuda cuda_arch=80 ^kokkos +wrapper
-  - cabana +cuda cuda_arch=80 ^kokkos +wrapper +cuda_lambda +cuda cuda_arch=80
-  - caliper +cuda cuda_arch=80
-  - chai +cuda cuda_arch=80 ^umpire ~shared
-  # - cp2k +mpi +cuda cuda_arch=80  # cp2k: Error: KeyError: 'Point environment variable LIBSMM_PATH to the absolute path of the libsmm.a file'
-  - flecsi +cuda cuda_arch=80
-  - ginkgo +cuda cuda_arch=80
-  - gromacs +cuda cuda_arch=80
-  - heffte +cuda cuda_arch=80
-  - hpx +cuda cuda_arch=80
-  - hypre +cuda cuda_arch=80
-  - kokkos +wrapper +cuda cuda_arch=80
-  - kokkos-kernels +cuda cuda_arch=80 ^kokkos +wrapper +cuda cuda_arch=80
-  - magma +cuda cuda_arch=80
-  - mfem +cuda cuda_arch=80
-  - mgard +serial +openmp +timing +unstructured +cuda cuda_arch=80
-  - omega-h +cuda cuda_arch=80
-  - parsec +cuda cuda_arch=80
-  - petsc +cuda cuda_arch=80
-  - raja +cuda cuda_arch=80
-  - slate +cuda cuda_arch=80
-  - strumpack ~slate +cuda cuda_arch=80
-  - sundials +cuda cuda_arch=80
-  - superlu-dist +cuda cuda_arch=80
-  - tasmanian +cuda cuda_arch=80
-  - trilinos +cuda cuda_arch=80
-  - umpire ~shared +cuda cuda_arch=80
-  # INCLUDED IN ECP DAV CUDA
-  - adios2 +cuda cuda_arch=80
-  # - paraview +cuda cuda_arch=80
-  - vtk-m +cuda cuda_arch=80
-  - zfp +cuda cuda_arch=80
-  # --
-  # - ascent +cuda cuda_arch=80     # ascent: https://github.com/spack/spack/issues/38045
-  # - axom +cuda cuda_arch=80       # axom: https://github.com/spack/spack/issues/29520
-  # - cusz +cuda cuda_arch=80       # cusz: https://github.com/spack/spack/issues/38787
-  # - dealii +cuda cuda_arch=80     # slepc: make[1]: *** internal error: invalid --jobserver-auth string 'fifo:/tmp/GMfifo1313'.
-  # - ecp-data-vis-sdk +adios2 +hdf5 +vtkm +zfp +paraview +cuda cuda_arch=80 # embree: https://github.com/spack/spack/issues/39534
-  # - lammps +cuda cuda_arch=80     # lammps: needs NVIDIA driver
-  # - lbann +cuda cuda_arch=80      # lbann: https://github.com/spack/spack/issues/38788
-  # - libpressio +bitgrooming +bzip2 +fpzip +hdf5 +libdistributed +lua +openmp +python +sz +sz3 +unix +zfp +json +remote +netcdf ~cusz +mgard +cuda cuda_arch=80 # libpressio: CMake Error at CMakeLists.txt:498 (find_library): Could not find CUFile_LIBRARY using the following names: cufile ; +cusz: https://github.com/spack/spack/issues/38787
-  # - py-torch +cuda cuda_arch=80   # skipped, installed by other means
-  # - slepc +cuda cuda_arch=80      # slepc: make[1]: *** internal error: invalid --jobserver-auth string 'fifo:/tmp/GMfifo1313'.
-  # - upcxx +cuda cuda_arch=80      # upcxx: needs NVIDIA driver
-
   # CUDA 90
   - amrex +cuda cuda_arch=90
   - arborx +cuda cuda_arch=90 ^kokkos +wrapper

var/spack/repos/builtin/packages/7zip/package.py

@@ -37,7 +37,6 @@ class _7zip(SourceforgePackage, Package):
 
     conflicts("platform=linux")
     conflicts("platform=darwin")
-    conflicts("platform=cray")
 
     # TODO: Patch on WinSDK version 10.0.20348.0 when SDK is introduced to Spack
     # This patch solves a known bug in that SDK version on the 7zip side

var/spack/repos/builtin/packages/acts/package.py

@@ -42,6 +42,8 @@ class Acts(CMakePackage, CudaPackage):
     # Supported Acts versions
     version("main", branch="main")
     version("master", branch="main", deprecated=True)  # For compatibility
+    version("35.0.0", commit="352b423ec31934f825deb9897780246d60ffc44e", submodules=True)
+    version("34.1.0", commit="8e1b7a659d912cd98db9d700906ff59e708da574", submodules=True)
     version("34.0.0", commit="daafd83adf0ce50f9667f3c9d4791a459e39fd1b", submodules=True)
     version("33.1.0", commit="00591a593a648430820e980b031301d25c18f1c7", submodules=True)
     version("33.0.0", commit="f6ed9013e76120137ae456583a04b554d88d9452", submodules=True)
@@ -198,7 +200,13 @@ class Acts(CMakePackage, CudaPackage):
         "examples",
         default=False,
         description="Build the examples",
-        when="@17: +fatras +identification +json +tgeo",
+        when="@17:34 +fatras +identification +json +tgeo",
+    )
+    variant(
+        "examples",
+        default=False,
+        description="Build the examples",
+        when="@35: +fatras +json +tgeo",
     )
     variant("integration_tests", default=False, description="Build the integration tests")
     variant("unit_tests", default=False, description="Build the unit tests")
@@ -233,7 +241,9 @@ class Acts(CMakePackage, CudaPackage):
     )
     variant("fatras_geant4", default=False, description="Build Geant4 Fatras package")
     variant("geomodel", default=False, description="Build GeoModel plugin", when="@33:")
-    variant("identification", default=False, description="Build the Identification plugin")
+    variant(
+        "identification", default=False, description="Build the Identification plugin", when="@:34"
+    )
     variant("json", default=False, description="Build the Json plugin")
     variant("legacy", default=False, description="Build the Legacy package")
     variant("mlpack", default=False, description="Build MLpack plugin", when="@25:31")
@@ -252,8 +262,11 @@ class Acts(CMakePackage, CudaPackage):
         description="Enable memory profiling using gperftools",
         when="@19.3:",
     )
-    variant("sycl", default=False, description="Build the SyCL plugin", when="@1:")
-    variant("tgeo", default=False, description="Build the TGeo plugin", when="+identification")
+    variant("sycl", default=False, description="Build the SyCL plugin", when="@1:34")
+    variant(
+        "tgeo", default=False, description="Build the TGeo plugin", when="@:34 +identification"
+    )
+    variant("tgeo", default=False, description="Build the TGeo plugin", when="@35:")
 
     # Variants that only affect Acts examples for now
     variant(
@@ -478,6 +491,8 @@ def plugin_cmake_variant(plugin_name, spack_variant):
             cuda_arch = spec.variants["cuda_arch"].value
             if cuda_arch != "none":
                 args.append(f"-DCUDA_FLAGS=-arch=sm_{cuda_arch[0]}")
+                arch_str = ";".join(self.spec.variants["cuda_arch"].value)
+                args.append(self.define("CMAKE_CUDA_ARCHITECTURES", arch_str))
 
         args.append(self.define_from_variant("CMAKE_CXX_STANDARD", "cxxstd"))
 

var/spack/repos/builtin/packages/adios2/package.py

@@ -26,10 +26,11 @@ class Adios2(CMakePackage, CudaPackage, ROCmPackage):
 
     version("master", branch="master")
     version(
-        "2.10.0",
-        sha256="e5984de488bda546553dd2f46f047e539333891e63b9fe73944782ba6c2d95e4",
+        "2.10.1",
+        sha256="ce776f3a451994f4979c6bd6d946917a749290a37b7433c0254759b02695ad85",
         preferred=True,
     )
+    version("2.10.0", sha256="e5984de488bda546553dd2f46f047e539333891e63b9fe73944782ba6c2d95e4")
     version("2.9.2", sha256="78309297c82a95ee38ed3224c98b93d330128c753a43893f63bbe969320e4979")
     version("2.9.1", sha256="ddfa32c14494250ee8a48ef1c97a1bf6442c15484bbbd4669228a0f90242f4f9")
     version("2.9.0", sha256="69f98ef58c818bb5410133e1891ac192653b0ec96eb9468590140f2552b6e5d1")
@@ -148,7 +149,7 @@ class Adios2(CMakePackage, CudaPackage, ROCmPackage):
     conflicts("+rocm", when="~kokkos", msg="ADIOS2 does not support HIP without Kokkos")
     conflicts("+sycl", when="~kokkos", msg="ADIOS2 does not support SYCL without Kokkos")
 
-    for _platform in ["linux", "darwin", "cray"]:
+    for _platform in ["linux", "darwin"]:
         depends_on("pkgconfig", type="build", when=f"platform={_platform}")
         variant(
             "pic",

var/spack/repos/builtin/packages/amber/package.py

@@ -143,7 +143,6 @@ class Amber(Package, CudaPackage):
     depends_on("cuda@7.5.18", when="@:16+cuda")
 
     # conflicts
-    conflicts("+x11", when="platform=cray", msg="x11 amber applications not available for cray")
     conflicts("+openmp", when="%clang", msg="OpenMP not available for the clang compiler")
     conflicts(
         "+openmp", when="%apple-clang", msg="OpenMP not available for the Apple clang compiler"

var/spack/repos/builtin/packages/amdsmi/package.py

@@ -13,13 +13,14 @@ class Amdsmi(CMakePackage):
     applications to monitor and control AMD device."""
 
     homepage = "https://github.com/ROCm/amdsmi"
-    url = "https://github.com/ROCm/amdsmi/archive/refs/tags/rocm-6.0.2.tar.gz"
+    url = "https://github.com/ROCm/amdsmi/archive/refs/tags/rocm-6.1.1.tar.gz"
 
     tags = ["rocm"]
     maintainers("srekolam", "renjithravindrankannath")
     libraries = ["libamd_smi"]
 
     license("MIT")
+    version("6.1.1", sha256="10ece6b1ca8bb36ab3ae987fc512838f30a92ab788a2200410e9c1707fe0166b")
     version("6.1.0", sha256="5bd1f150a2191b1703ff2670e40f6fed730f59f155623d6e43b7f64c39ae0967")
     version("6.0.2", sha256="aeadf07750def0325a0eaa29e767530b2ec94f3d45dc3b7452fd7a2493769428")
     version("6.0.0", sha256="2626e3af9d60dec245c61af255525a0c0841a73fb7ec2836477c0ce5793de39c")

var/spack/repos/builtin/packages/apple-libunwind/package.py

@@ -19,7 +19,6 @@ class AppleLibunwind(Package):
     # Darwin must be expressed by listing a conflict with every
     # platform that isn't Darwin/macOS
     conflicts("platform=linux")
-    conflicts("platform=cray")
 
     # Override the fetcher method to throw a useful error message;
     # avoids GitHub issue (#7061) in which the opengl placeholder

var/spack/repos/builtin/packages/apple-libuuid/package.py

@@ -17,7 +17,6 @@ class AppleLibuuid(BundlePackage):
 
     # Only supported on 'platform=darwin'
     conflicts("platform=linux")
-    conflicts("platform=cray")
     conflicts("platform=windows")
 
     @property

var/spack/repos/builtin/packages/apptainer/package.py

@@ -4,6 +4,9 @@
 # SPDX-License-Identifier: (Apache-2.0 OR MIT)
 
 
+from glob import glob
+from os.path import basename
+
 from spack.package import *
 from spack.pkg.builtin.singularityce import SingularityBase
 
@@ -33,6 +36,8 @@ class Apptainer(SingularityBase):
     )
 
     version("main", branch="main")
+    version("1.3.1", sha256="6956c689c4a8f148789c5c34b33c15ad8f3460b4cee3f48022119fd872eacee9")
+    version("1.2.5", sha256="606b67ef97683e1420401718687d258b1034fdf2edae72eeacd0828dffbfc2c2")
     version("1.1.9", sha256="c615777539154288542cf393d3fd44c04ccb3260bc6330dc324d4e4ebe902bfa")
     version("1.1.7", sha256="e6d3956a26c3965703402e17f153ba07f59bf710068806462b314d2d04e825e7")
     version("1.1.6", sha256="5f32d305279a51ce8bdbe69e733c4ac12b1efdcb77758fab8ec9463e96a8fd82")
@@ -41,8 +46,15 @@ class Apptainer(SingularityBase):
     version("1.1.3", sha256="c7bf7f4d5955e1868739627928238d02f94ca9fd0caf110b0243d65548427899")
     version("1.0.2", sha256="2d7a9d0a76d5574459d249c3415e21423980d9154ce85e8c34b0600782a7dfd3")
 
+    depends_on("e2fsprogs@1.47:+fuse2fs", type="run")
     depends_on("go@1.17.5:", when="@1.1.0:")
+    depends_on("go@1.19:", when="@1.2:")
+    depends_on("go@1.20:", when="@1.3:")
+    depends_on("gocryptfs@2.4:", type="run", when="@1.3:")
     depends_on("squashfuse", type="run")
+    depends_on("squashfuse@0.5.1:", type="run", when="@1.3:")
+    depends_on("fuse-overlayfs", type="run")
+    depends_on("fuse-overlayfs@1.13:", type="run", when="@1.3:")
 
     singularity_org = "apptainer"
     singularity_name = "apptainer"
@@ -64,3 +76,19 @@ def flag_handler(self, name, flags):
         # Certain go modules this build pulls in cannot be built with anything
         # other than -O0. Best to just discard any injected flags.
         return (None, flags, None)
+
+    # They started vendoring the fuse bits and assume they'll be in the
+    # libexec/apptainer prefix as a result. When singularity is run with
+    # suid it doesn't search the user's $PATH for security reasons.
+    # Since we don't use the vendored deps and instead install them in
+    # their own prefixes they are not found by default.
+    # This is likely only relevant for 1.3:, but it should be fine everywhere
+    @run_after("install")
+    def fix_binary_path(self):
+        for i in [
+            s for s in ["e2fsprogs", "gocryptfs", "squashfuse", "fuse-overlayfs"] if s in self.spec
+        ]:
+            for binary in glob(join_path(self.spec[i].prefix.bin, "*")):
+                symlink(
+                    binary, join_path(self.spec.prefix.libexec.apptainer.bin, basename(binary))
+                )

var/spack/repos/builtin/packages/aqlprofile/package.py

@@ -8,6 +8,20 @@
 from spack.package import *
 
 _versions = {
+    "6.1.1": {
+        "apt": (
+            "faa5dae914fc63f0c8d0c2be28b7ec502db487004bdff0fe88dd15432efc5401",
+            "https://repo.radeon.com/rocm/apt/6.1.1/pool/main/h/hsa-amd-aqlprofile/hsa-amd-aqlprofile_1.0.0.60101.60101-90~20.04_amd64.deb",
+        ),
+        "yum": (
+            "cc247e15ceff625c94d6c7104ffea3990a4acbcd2f9114914ab7ab829fae4aeb",
+            "https://repo.radeon.com/rocm/yum/6.1.1/main/hsa-amd-aqlprofile-1.0.0.60101.60101-90.el7.x86_64.rpm",
+        ),
+        "zyp": (
+            "9af82841be1765d6334b06a463583570653b6a36d0de29cfc00c5c4b6560b956",
+            "https://repo.radeon.com/rocm/zyp/6.1.1/main/hsa-amd-aqlprofile-1.0.0.60101.60101-sles154.90.x86_64.rpm",
+        ),
+    },
     "6.1.0": {
         "apt": (
             "0ef862503245f12721384443f8347528f3d5c2c7762289c770521f3235ba36c9",

var/spack/repos/builtin/packages/armadillo/package.py

@@ -16,6 +16,7 @@ class Armadillo(CMakePackage):
 
     license("Apache-2.0")
 
+    version("12.8.3", sha256="2922589f6387796504b340da6bb954bef3d87574c298515893289edd2d890151")
     version("12.8.2", sha256="03b62f8c09e4f5d74643b478520741b8e27b55e7e4525978fcae2f5d791ac3bf")
     version("12.8.1", sha256="2781dd3a6cc5f9a49c91a4519dde2b1c24335a5bfe0cc1c9881b6363142452b4")
     version("12.4.0", sha256="9905282781ced3f99769b0e45a705ecb50192ca1622300707b3302ea167dc883")

var/spack/repos/builtin/packages/arrow/package.py

@@ -17,6 +17,8 @@ class Arrow(CMakePackage, CudaPackage):
 
     license("Apache-2.0")
 
+    version("16.1.0", sha256="9762d9ecc13d09de2a03f9c625a74db0d645cb012de1e9a10dfed0b4ddc09524")
+    version("15.0.2", sha256="4735b349845bff1fe95ed11abbfed204eb092cabc37523aa13a80cb830fe5b5e")
     version("14.0.2", sha256="07cdb4da6795487c800526b2865c150ab7d80b8512a31793e6a7147c8ccd270f")
     version("14.0.1", sha256="a48e54a09d58168bc04d86b13e7dab04f0aaba18a6f7e4dadf3e9c7bb835c8f1")
     version("14.0.0", sha256="39e3388bbaba23faa7a5e8a82ebba7fe4c38ace2c394d6a3f26559715b30f401")
@@ -42,6 +44,7 @@ class Arrow(CMakePackage, CudaPackage):
     depends_on("boost@1.60: +filesystem +system")
     depends_on("cmake@3.2.0:", type="build")
     depends_on("flatbuffers")
+    conflicts("%gcc@14", when="@:15.0.1")  # https://github.com/apache/arrow/issues/40009
     depends_on("llvm@:11 +clang", when="+gandiva @:3", type="build")
     depends_on("llvm@:12 +clang", when="+gandiva @:4", type="build")
     depends_on("llvm@:13 +clang", when="+gandiva @:7", type="build")

var/spack/repos/builtin/packages/axl/package.py

@@ -100,9 +100,6 @@ def cmake_args(self):
             args.append(self.define_from_variant("ENABLE_IBM_BBAPI", "bbapi"))
             args.append(self.define_from_variant("ENABLE_CRAY_DW", "dw"))
             args.append(self.define_from_variant("BUILD_SHARED_LIBS", "shared"))
-        else:
-            if spec.satisfies("platform=cray"):
-                args.append(self.define("AXL_LINK_STATIC", True))
 
         if spec.satisfies("@0.6.0:"):
             args.append(self.define_from_variant("ENABLE_PTHREADS", "pthreads"))

var/spack/repos/builtin/packages/binutils/package.py

@@ -238,7 +238,7 @@ def test_binaries(self):
 class AutotoolsBuilder(spack.build_systems.autotools.AutotoolsBuilder):
     def configure_args(self):
         known_targets = {"x86_64": "x86_64", "aarch64": "aarch64", "ppc64le": "powerpc"}
-        known_platforms = {"linux": "linux-gnu", "cray": "linux-gnu", "darwin": "apple-darwin"}
+        known_platforms = {"linux": "linux-gnu", "darwin": "apple-darwin"}
 
         family = str(self.spec.target.family)
         platform = self.spec.platform

var/spack/repos/builtin/packages/boost/bootstrap-path.patch

@@ -1,33 +0,0 @@
-Remove the spack wrapper directories from PATH for the bootstrap step.
-This was breaking the build for Cray (and other cross-compile) because
-bjam was built for the BE and died on SIGILL on the FE.  See issue
-#9613.
-
-This only affects building bjam.  The boost libraries are still built
-the normal spack way with the spack wrappers.
-
-
-diff -Naurb boost_1_66_0.orig/bootstrap.sh boost_1_66_0/bootstrap.sh
---- boost_1_66_0.orig/bootstrap.sh	2017-12-13 17:56:35.000000000 -0600
-+++ boost_1_66_0/bootstrap.sh	2019-01-09 13:51:56.407553214 -0600
-@@ -7,6 +7,20 @@
- 
- # boostinspect:notab - Tabs are required for the Makefile.
- 
-+NEWPATH=
-+OLDIFS="$IFS"
-+IFS=:
-+
-+for dir in $PATH ; do
-+   case "x$dir" in
-+      *lib*spack*env* ) ;;
-+      * ) NEWPATH="${NEWPATH}:${dir}" ;;
-+   esac
-+done
-+
-+IFS="$OLDIFS"
-+PATH="$NEWPATH"
-+
- BJAM=""
- TOOLSET=""
- BJAM_CONFIG=""

var/spack/repos/builtin/packages/boost/package.py

@@ -342,9 +342,6 @@ def libs(self):
     # Patch: https://github.com/boostorg/process/commit/6a4d2ff72114ef47c7afaf92e1042aca3dfa41b0.patch
     patch("1.72_boost_process.patch", level=2, when="@1.72.0")
 
-    # Fix the bootstrap/bjam build for Cray
-    patch("bootstrap-path.patch", when="@1.39.0: platform=cray")
-
     # Patch fix for warnings from commits 2d37749, af1dc84, c705bab, and
     # 0134441 on https://github.com/boostorg/system.
     patch("system-non-virtual-dtor-include.patch", when="@1.69.0", level=2)
@@ -528,10 +525,6 @@ def determine_bootstrap_options(self, spec, with_libs, options):
                 # wrappers.  Since Boost doesn't use the MPI C++ bindings,
                 # that can be used as a compiler option instead.
                 mpi_line = "using mpi : %s" % spec["mpi"].mpicxx
-
-                if "platform=cray" in spec:
-                    mpi_line += " : <define>MPICH_SKIP_MPICXX"
-
                 f.write(mpi_line + " ;\n")
 
             if "+python" in spec:

var/spack/repos/builtin/packages/brpc/package.py

@@ -17,6 +17,7 @@ class Brpc(CMakePackage):
 
     license("BSL-1.0")
 
+    version("1.9.0", sha256="85856da0216773e1296834116f69f9e80007b7ff421db3be5c9d1890ecfaea74")
     version("0.9.7", sha256="722cd342baf3b05189ca78ecf6c56ea6ffec22e62fc2938335e4e5bab545a49c")
     version("0.9.6", sha256="b872ca844999e0ba768acd823b409761f126590fb34cb0183da915a595161446")
     version("0.9.5", sha256="11ca8942242a4c542c11345b7463a4aea33a11ca33e91d9a2f64f126df8c70e9")

var/spack/repos/builtin/packages/bzip2/package.py

@@ -47,7 +47,6 @@ class Bzip2(Package, SourcewarePackage):
         depends_on("diffutils", type="build")
 
     depends_on("gmake", type="build", when="platform=linux")
-    depends_on("gmake", type="build", when="platform=cray")
     depends_on("gmake", type="build", when="platform=darwin")
 
     @classmethod

var/spack/repos/builtin/packages/candle-benchmarks/package.py

@@ -1,43 +0,0 @@
-# Copyright 2013-2024 Lawrence Livermore National Security, LLC and other
-# Spack Project Developers. See the top-level COPYRIGHT file for details.
-#
-# SPDX-License-Identifier: (Apache-2.0 OR MIT)
-
-from spack.package import *
-
-
-class CandleBenchmarks(Package):
-    """ECP-CANDLE Benchmarks"""
-
-    homepage = "https://github.com/ECP-CANDLE/Benchmarks"
-    url = "https://github.com/ECP-CANDLE/Benchmarks/archive/v0.1.tar.gz"
-
-    tags = ["proxy-app", "ecp-proxy-app"]
-
-    license("MIT")
-
-    version("0.5.1", sha256="3d8c4f5a8304ee238e93e88e871a8b4d47d6b377159c048ac6d3ed01b6ffc245")
-    version("0.1", sha256="767f74f43ee3a5d4e0f26750f2a96b8433e25a9cd4f2d29938ac8acf263ab58d")
-    version("0.0", sha256="faa0d24355071de0e375d72ed1a39dcf30006602210cf8cf09db568b5d0b679f")
-
-    variant("mpi", default=True, description="Build with MPI support")
-
-    extends("python")
-    depends_on("python@2.7:")
-    depends_on("py-theano +cuda", type=("build", "run"))
-    depends_on("py-keras", type=("build", "run"))
-    depends_on("py-matplotlib +image@:2.2.3", type=("build", "run"))
-    depends_on("py-tqdm", type=("build", "run"))
-    depends_on("py-scikit-learn", type=("build", "run"))
-    depends_on("opencv@3.2.0: +highgui +imgproc +jpeg +png +tiff ~dnn ~eigen ~gtk")
-    depends_on("py-mdanalysis", type=("build", "run"))
-    depends_on("py-mpi4py", when="+mpi", type=("build", "run"))
-    depends_on("py-h5py~mpi", when="~mpi", type=("build", "run"))
-    depends_on("py-h5py+mpi", when="+mpi", type=("build", "run"))
-    depends_on("py-requests", type=("build", "run"))
-
-    # see #3244, but use external for now
-    # depends_on('tensorflow')
-
-    def install(self, spec, prefix):
-        install_tree(self.stage.source_path, prefix.bin)

var/spack/repos/builtin/packages/cdd/package.py

@@ -31,6 +31,6 @@ def url_for_version(self, version):
 
     def install(self, spec, prefix):
         # The Makefile isn't portable; use our own instead
-        makeargs = ["-f", "Makefile.spack", "PREFIX=%s" % prefix]
+        makeargs = ["-f", "Makefile.spack", f"PREFIX={prefix}"]
         make(*makeargs)
         make("install", *makeargs)

var/spack/repos/builtin/packages/centrifuge/package.py

@@ -12,6 +12,7 @@ class Centrifuge(MakefilePackage):
     homepage = "https://ccb.jhu.edu/software/centrifuge/index.shtml"
     url = "https://github.com/DaehwanKimLab/centrifuge/archive/refs/tags/v1.0.4.tar.gz"
 
+    version("1.0.4.1", sha256="638cc6701688bfdf81173d65fa95332139e11b215b2d25c030f8ae873c34e5cc")
     version("1.0.4", sha256="929daed0f84739f7636cc1ea2757527e83373f107107ffeb5937a403ba5201bc")
 
     def build(self, spec, prefix):

var/spack/repos/builtin/packages/cjson/package.py

@@ -15,5 +15,6 @@ class Cjson(CMakePackage):
 
     license("MIT")
 
+    version("1.7.18", sha256="cc6d93cc3b659037c34193ecc7be5a874a18c2ac67b24efe82db6a759b486b5d")
     version("1.7.17", sha256="51f3b07aece8d1786e74b951fd92556506586cb36670741b6bfb79bf5d484216")
     version("1.7.15", sha256="c55519316d940757ef93a779f1db1ca809dbf979c551861f339d35aaea1c907c")

var/spack/repos/builtin/packages/clingo-bootstrap/package.py

@@ -58,12 +58,6 @@ class ClingoBootstrap(Clingo):
         when="platform=linux",
         msg="GCC or clang are required to bootstrap clingo on Linux",
     )
-    requires(
-        "%gcc",
-        "%clang",
-        when="platform=cray",
-        msg="GCC or clang are required to bootstrap clingo on Cray",
-    )
     conflicts("%gcc@:5", msg="C++14 support is required to bootstrap clingo")
 
     # On Darwin we bootstrap with Apple Clang

var/spack/repos/builtin/packages/clingo/package.py

@@ -53,7 +53,6 @@ class Clingo(CMakePackage):
         depends_on("bison@2.5:", type="build", when="platform=linux")
         depends_on("bison@2.5:", type="build", when="platform=darwin")
         depends_on("bison@2.5:", type="build", when="platform=freebsd")
-        depends_on("bison@2.5:", type="build", when="platform=cray")
 
     with when("platform=windows"):
         depends_on("re2c@0.13:", type="build")
@@ -67,7 +66,6 @@ class Clingo(CMakePackage):
         depends_on("py-cffi", type=("build", "run"), when="@5.5.0: platform=linux")
         depends_on("py-cffi", type=("build", "run"), when="@5.5.0: platform=darwin")
         depends_on("py-cffi", type=("build", "run"), when="@5.5.0: platform=freebsd")
-        depends_on("py-cffi", type=("build", "run"), when="@5.5.0: platform=cray")
 
     patch("python38.patch", when="@5.3:5.4.0")
     patch("size-t.patch", when="%msvc")

var/spack/repos/builtin/packages/cmake/package.py

@@ -422,7 +422,6 @@ class Cmake(Package):
     depends_on("ninja", when="platform=windows")
     depends_on("gmake", when="platform=linux")
     depends_on("gmake", when="platform=darwin")
-    depends_on("gmake", when="platform=cray")
     depends_on("gmake", when="platform=freebsd")
 
     # We default ownlibs to true because it greatly speeds up the CMake
@@ -469,7 +468,7 @@ class Cmake(Package):
     with when("~ownlibs"):
         depends_on("expat")
         # expat/zlib are used in CMake/CTest, so why not require them in libarchive.
-        for plat in ["darwin", "cray", "linux"]:
+        for plat in ["darwin", "linux"]:
             with when("platform=%s" % plat):
                 depends_on("libarchive@3.1.0: xar=expat compression=zlib")
                 depends_on("libarchive@3.3.3:", when="@3.15.0:")

var/spack/repos/builtin/packages/cmark/package.py

@@ -15,6 +15,7 @@ class Cmark(CMakePackage):
 
     license("BSD-2-Clause")
 
+    version("0.31.0", sha256="bbcb8f8c03b5af33fcfcf11a74e9499f20a9043200b8552f78a6e8ba76e04d11")
     version("0.29.0", sha256="2558ace3cbeff85610de3bda32858f722b359acdadf0c4691851865bb84924a6")
     version("0.28.3", sha256="acc98685d3c1b515ff787ac7c994188dadaf28a2d700c10c1221da4199bae1fc")
     version("0.28.2", sha256="fe4b04fcccb2dc72641096de02a8eefb53059e85f9dd904f0386dc86326cc414")

var/spack/repos/builtin/packages/comgr/package.py

@@ -30,6 +30,7 @@ def url_for_version(self, version):
     license("NCSA")
 
     version("master", branch="amd-stg-open")
+    version("6.1.1", sha256="f1a67efb49f76a9b262e9735d3f75ad21e3bd6a05338c9b15c01e6c625c4460d")
     version("6.1.0", sha256="6bd9912441de6caf6b26d1323e1c899ecd14ff2431874a2f5883d3bc5212db34")
     version("6.0.2", sha256="737b110d9402509db200ee413fb139a78369cf517453395b96bda52d0aa362b9")
     version("6.0.0", sha256="04353d27a512642a5e5339532a39d0aabe44e0964985de37b150a2550385800a")
@@ -83,6 +84,7 @@ def url_for_version(self, version):
         "6.0.0",
         "6.0.2",
         "6.1.0",
+        "6.1.1",
         "master",
     ]:
         # llvm libs are linked statically, so this *could* be a build dep
@@ -92,7 +94,18 @@ def url_for_version(self, version):
         # that a conditional dependency
         depends_on(f"rocm-device-libs@{ver}", when=f"@{ver} ^llvm-amdgpu ~rocm-device-libs")
 
-    for ver in ["5.5.0", "5.5.1", "5.6.0", "5.6.1", "5.7.0", "5.7.1", "6.0.0", "6.0.2", "6.1.0"]:
+    for ver in [
+        "5.5.0",
+        "5.5.1",
+        "5.6.0",
+        "5.6.1",
+        "5.7.0",
+        "5.7.1",
+        "6.0.0",
+        "6.0.2",
+        "6.1.0",
+        "6.1.1",
+    ]:
         depends_on(f"rocm-core@{ver}", when=f"@{ver}")
 
     @property

var/spack/repos/builtin/packages/commons-lang3/package.py

@@ -23,6 +23,7 @@ class CommonsLang3(Package):
 
     license("Apache-2.0")
 
+    version("3.14.0", sha256="317c3e3fcd5fcca3781a7996ff1e0c50c13244ee961e94e5f6f6d84b84733b16")
     version("3.12.0", sha256="33012465dfcb7f790aca333e09ebf105e2a5fb95c2c638b3df790d3efa908e28")
     version("3.7", sha256="94dc8289ce90b77b507d9257784d9a43b402786de40c164f6e3990e221a2a4d2")
 
@@ -30,4 +31,4 @@ class CommonsLang3(Package):
     depends_on("java@7:", type="run")
 
     def install(self, spec, prefix):
-        install("commons-lang3-{0}.jar".format(self.version), prefix)
+        install(f"commons-lang3-{self.version}.jar", prefix)

var/spack/repos/builtin/packages/composable-kernel/package.py

@@ -13,12 +13,13 @@ class ComposableKernel(CMakePackage):
 
     homepage = "https://github.com/ROCm/composable_kernel"
     git = "https://github.com/ROCm/composable_kernel.git"
-    url = "https://github.com/ROCm/composable_kernel/archive/refs/tags/rocm-6.1.0.tar.gz"
+    url = "https://github.com/ROCm/composable_kernel/archive/refs/tags/rocm-6.1.1.tar.gz"
     maintainers("srekolam", "afzpatel")
 
     license("MIT")
 
     version("master", branch="develop")
+    version("6.1.1", sha256="f55643c6eee0878e8f2d14a382c33c8b84af0bdf8f31b37b6092b377f7a9c6b5")
     version("6.1.0", sha256="355a4514b96b56aa9edf78198a3e22067e7397857cfe29d9a64d9c5557b9f83d")
     version("6.0.2", sha256="f648a99388045948b7d5fbf8eb8da6a1803c79008b54d406830b7f9119e1dcf6")
     version("6.0.0", sha256="a8f736f2f2a8afa4cddd06301205be27774d85f545429049b4a2bbbe6fcd67df")
@@ -51,6 +52,7 @@ class ComposableKernel(CMakePackage):
 
     for ver in [
         "master",
+        "6.1.1",
         "6.1.0",
         "6.0.2",
         "6.0.0",

var/spack/repos/builtin/packages/conmon/package.py

@@ -15,6 +15,7 @@ class Conmon(MakefilePackage):
 
     license("Apache-2.0")
 
+    version("2.1.12", sha256="842f0b5614281f7e35eec2a4e35f9f7b9834819aa58ecdad8d0ff6a84f6796a6")
     version("2.1.7", sha256="7d0f9a2f7cb8a76c51990128ac837aaf0cc89950b6ef9972e94417aa9cf901fe")
     version("2.1.5", sha256="ee3179ee2b9a9107acec00eb546062cf7deb847f135a3b81503d22b0d226b3ed")
     version("2.0.30", sha256="4b0a98fbe8a63c42f60edac25c19aa6606caa7b1e4fe7846fc7f7de0b566ba25")

var/spack/repos/builtin/packages/coreutils/package.py

@@ -24,6 +24,7 @@ class Coreutils(AutotoolsPackage, GNUMirrorPackage):
 
     license("GPL-3.0-or-later")
 
+    version("9.5", sha256="cd328edeac92f6a665de9f323c93b712af1858bc2e0d88f3f7100469470a1b8a")
     version("9.4", sha256="ea613a4cf44612326e917201bbbcdfbd301de21ffc3b59b6e5c07e040b275e52")
     version("9.3", sha256="adbcfcfe899235b71e8768dcf07cd532520b7f54f9a8064843f8d199a904bbaa")
     version("9.2", sha256="6885ff47b9cdb211de47d368c17853f406daaf98b148aaecdf10de29cc04b0b3")

var/spack/repos/builtin/packages/cosign/package.py

@@ -21,6 +21,7 @@ class Cosign(Package):
     license("Apache-2.0")
 
     version("main", branch="main")
+    version("2.2.4", sha256="2e31e8638de1869514cb0478796d2b55b455552fbd03c3b7ba0edf27b0b5b944")
     version("1.3.1", sha256="7f7e0af52ee8d795440e66dcc1a7a25783e22d30935f4f957779628b348f38af")
 
     depends_on("go", type="build")

var/spack/repos/builtin/packages/cpp-httplib/package.py

@@ -14,6 +14,7 @@ class CppHttplib(CMakePackage):
 
     license("MIT")
 
+    version("0.15.3", sha256="2121bbf38871bb2aafb5f7f2b9b94705366170909f434428352187cb0216124e")
     version("0.12.5", sha256="b488f3fa9c6bf35608c3d9a5b69be52e016bbf2fbfe67e5ee684eadb2655493e")
     version("0.12.3", sha256="175ced3c9cdaf221e9edf210297568d8f7d402a41d6db01254ac9e0b25487c54")
     version("0.5.9", sha256="c9e7aef3b0d4e80ee533d10413508d8a6e09a67d0d59646c43111f3993de006e")

var/spack/repos/builtin/packages/curl/package.py

@@ -281,7 +281,7 @@ class Curl(NMakePackage, AutotoolsPackage):
     variant("librtmp", default=False, description="enable Rtmp support")
     variant("ldap", default=False, description="enable ldap support")
     variant("libidn2", default=False, description="enable libidn2 support")
-    for plat in ["darwin", "cray", "linux"]:
+    for plat in ["darwin", "linux"]:
         with when("platform=%s" % plat):
             # curl queries pkgconfig for openssl compilation flags
             depends_on("pkgconfig", type="build")
@@ -293,7 +293,6 @@ class Curl(NMakePackage, AutotoolsPackage):
         description="Build shared libs, static libs or both",
     )
 
-    conflicts("platform=cray", when="tls=secure_transport", msg="Only supported on macOS")
     conflicts("platform=linux", when="tls=secure_transport", msg="Only supported on macOS")
 
     depends_on("gnutls", when="tls=gnutls")

var/spack/repos/builtin/packages/dftd3-lib/package.py

@@ -13,6 +13,7 @@ class Dftd3Lib(MakefilePackage):
     homepage = "https://www.chemie.uni-bonn.de/pctc/mulliken-center/software/dft-d3/dft-d3"
     url = "https://github.com/dftbplus/dftd3-lib/archive/0.9.2.tar.gz"
 
+    version("0.10", sha256="db61bc6c7c699628e8c5bf2018ea38de03a53eac38014e06845829d765caf6bb")
     version("0.9.2", sha256="4178f3cf2f3e7e982a7084ec66bac92b4fdf164537d9fc0ada840a11b784f0e0")
 
     # This fixes a concurrency bug, where make would try to start compiling

var/spack/repos/builtin/packages/dihydrogen/package.py

@@ -257,13 +257,6 @@ def initconfig_compiler_entries(self):
         entries.append(cmake_cache_string("CMAKE_CXX_STANDARD", "17"))
         entries.append(cmake_cache_option("BUILD_SHARED_LIBS", "+shared" in spec))
         entries.append(cmake_cache_option("CMAKE_EXPORT_COMPILE_COMMANDS", True))
-
-        # It's possible this should have a `if "platform=cray" in
-        # spec:` in front of it, but it's not clear to me when this is
-        # set. In particular, I don't actually see this blurb showing
-        # up on Tioga builds. Which is causing the obvious problem
-        # (namely, the one this was added to supposedly solve in the
-        # first place.
         entries.append(cmake_cache_option("MPI_ASSUME_NO_BUILTIN_MPI", True))
 
         if spec.satisfies("%clang +distconv platform=darwin"):

var/spack/repos/builtin/packages/dla-future-fortran/package.py

@@ -38,6 +38,10 @@ def cmake_args(self):
         args = []
 
         args.append(self.define_from_variant("BUILD_SHARED_LIBS", "shared"))
-        args.append(self.define_from_variant("DLAF_FORTRAN_BUILD_TESTING", "test"))
+
+        if self.spec.satisfies("+test"):
+            args.append(self.define("DLAF_FORTRAN_BUILD_TESTING", True))
+            # Tests run with 6 MPI ranks
+            args.append(self.define("MPIEXEC_MAX_NUMPROCS", 6))
 
         return args

var/spack/repos/builtin/packages/dla-future/package.py

@@ -16,6 +16,7 @@ class DlaFuture(CMakePackage, CudaPackage, ROCmPackage):
 
     license("BSD-3-Clause")
 
+    version("0.5.0", sha256="f964ee2a96bb58b3f0ee4563ae65fcd136e409a7c0e66beda33f926fc9515a8e")
     version("0.4.1", sha256="ba95f26475ad68da1f3a24d091dc1b925525e269e4c83c1eaf1d37d29b526666")
     version("0.4.0", sha256="34fd0da0d1a72b6981bed0bba029ba0947e0d0d99beb3e0aad0a478095c9527d")
     version("0.3.1", sha256="350a7fd216790182aa52639a3d574990a9d57843e02b92d87b854912f4812bfe")
@@ -45,6 +46,16 @@ class DlaFuture(CMakePackage, CudaPackage, ROCmPackage):
         description="Build C API compatible with ScaLAPACK",
     )
 
+    variant("mpi_gpu_aware", default=False, when="@0.5.0:", description="Use GPU-aware MPI.")
+    conflicts("+mpi_gpu_aware", when="~cuda ~rocm", msg="GPU-aware MPI requires +cuda or +rocm")
+
+    variant(
+        "mpi_gpu_force_contiguous",
+        default=True,
+        when="@0.5.0: +mpi_gpu_aware",
+        description="Force GPU communication buffers to be contiguous before communicating.",
+    )
+
     generator("ninja")
 
     depends_on("cmake@3.22:", type="build")
@@ -142,7 +153,7 @@ def cmake_args(self):
         args.append(self.define_from_variant("BUILD_SHARED_LIBS", "shared"))
 
         # BLAS/LAPACK
-        if spec["lapack"].name in INTEL_MATH_LIBRARIES:
+        if spec.version <= Version("0.4") and spec["lapack"].name in INTEL_MATH_LIBRARIES:
             mkl_provider = spec["lapack"].name
 
             vmap = {
@@ -206,7 +217,7 @@ def cmake_args(self):
                         )
                     )
         else:
-            args.append(self.define("DLAF_WITH_MKL", False))
+            args.append(self.define("DLAF_WITH_MKL", spec["lapack"].name in INTEL_MATH_LIBRARIES))
             args.append(
                 self.define(
                     "LAPACK_LIBRARY",
@@ -218,6 +229,13 @@ def cmake_args(self):
 
         args.append(self.define_from_variant("DLAF_WITH_SCALAPACK", "scalapack"))
 
+        args.append(self.define_from_variant("DLAF_WITH_MPI_GPU_AWARE", "mpi_gpu_aware"))
+        args.append(
+            self.define_from_variant(
+                "DLAF_WITH_MPI_GPU_FORCE_CONTIGUOUS", "mpi_gpu_force_contiguous"
+            )
+        )
+
         # CUDA/HIP
         args.append(self.define_from_variant("DLAF_WITH_CUDA", "cuda"))
         args.append(self.define_from_variant("DLAF_WITH_HIP", "rocm"))

var/spack/repos/builtin/packages/docbook-xml/package.py

@@ -44,16 +44,16 @@ def config_docbook(self):
             "--noout",
             "--add",
             "public",
-            "-//OASIS//DTD DocBook XML CALS Table Model " "V{0}//EN".format(version),
-            "file://{0}/calstblx.dtd".format(prefix),
+            f"-//OASIS//DTD DocBook XML CALS Table Model V{version}//EN",
+            f"file://{prefix}/calstblx.dtd",
             docbook,
         )
         xmlcatalog(
             "--noout",
             "--add",
             "public",
-            "-//OASIS//DTD DocBook XML V{0}//EN".format(version),
-            "file://{0}/docbookx.dtd".format(prefix),
+            f"-//OASIS//DTD DocBook XML V{version}//EN",
+            f"file://{prefix}/docbookx.dtd",
             docbook,
         )
         xmlcatalog(
@@ -61,15 +61,15 @@ def config_docbook(self):
             "--add",
             "public",
             "-//OASIS//DTD XML Exchange Table Model 19990315//EN",
-            "file://{0}/soextblx.dtd".format(prefix),
+            f"file://{prefix}/soextblx.dtd",
             docbook,
         )
         xmlcatalog(
             "--noout",
             "--add",
             "public",
-            "-//OASIS//ENTITIES DocBook XML Character Entities " "V{0}//EN".format(version),
-            "file://{0}/dbcentx.mod".format(prefix),
+            f"-//OASIS//ENTITIES DocBook XML Character Entities V{version}//EN",
+            f"file://{prefix}/dbcentx.mod",
             docbook,
         )
         xmlcatalog(
@@ -78,39 +78,39 @@ def config_docbook(self):
             "public",
             "-//OASIS//ENTITIES DocBook XML Additional General Entities "
             "V{0}//EN".format(version),
-            "file://{0}/dbgenent.mod".format(prefix),
+            f"file://{prefix}/dbgenent.mod",
             docbook,
         )
         xmlcatalog(
             "--noout",
             "--add",
             "public",
-            "-//OASIS//ELEMENTS DocBook XML Document Hierarchy " "V{0}//EN".format(version),
-            "file://{0}/dbhierx.mod".format(prefix),
+            f"-//OASIS//ELEMENTS DocBook XML Document Hierarchy V{version}//EN",
+            f"file://{prefix}/dbhierx.mod",
             docbook,
         )
         xmlcatalog(
             "--noout",
             "--add",
             "public",
-            "-//OASIS//ENTITIES DocBook XML Notations " "V{0}//EN".format(version),
-            "file://{0}/dbnotnx.mod".format(prefix),
+            f"-//OASIS//ENTITIES DocBook XML Notations V{version}//EN",
+            f"file://{prefix}/dbnotnx.mod",
             docbook,
         )
         xmlcatalog(
             "--noout",
             "--add",
             "public",
-            "-//OASIS//ELEMENTS DocBook XML Information Pool " "V{0}//EN".format(version),
-            "file://{0}/dbpoolx.mod".format(prefix),
+            f"-//OASIS//ELEMENTS DocBook XML Information Pool V{version}//EN",
+            f"file://{prefix}/dbpoolx.mod",
             docbook,
         )
         xmlcatalog(
             "--noout",
             "--add",
             "public",
-            "-//OASIS//ELEMENTS DocBook XML HTML Tables " "V{0}//EN".format(version),
-            "file://{0}/htmltblx.mod".format(prefix),
+            f"-//OASIS//ELEMENTS DocBook XML HTML Tables V{version}//EN",
+            f"file://{prefix}/htmltblx.mod",
             docbook,
         )
         xmlcatalog(
@@ -118,7 +118,7 @@ def config_docbook(self):
             "--add",
             "public",
             "ISO 8879:1986//ENTITIES Added Math Symbols: Arrow " "Relations//EN",
-            "file://{0}/isoamsa.ent".format(ent_dir),
+            f"file://{ent_dir}/isoamsa.ent",
             docbook,
         )
         xmlcatalog(
@@ -126,7 +126,7 @@ def config_docbook(self):
             "--add",
             "public",
             "ISO 8879:1986//ENTITIES Added Math Symbols: Binary " "Operators//EN",
-            "file://{0}/isoamsb.ent".format(ent_dir),
+            f"file://{ent_dir}/isoamsb.ent",
             docbook,
         )
         xmlcatalog(
@@ -134,7 +134,7 @@ def config_docbook(self):
             "--add",
             "public",
             "ISO 8879:1986//ENTITIES Added Math Symbols: Delimiters//EN",
-            "file://{0}/isoamsc.ent".format(ent_dir),
+            f"file://{ent_dir}/isoamsc.ent",
             docbook,
         )
         xmlcatalog(
@@ -142,7 +142,7 @@ def config_docbook(self):
             "--add",
             "public",
             "ISO 8879:1986//ENTITIES Added Math Symbols: " "Negated Relations//EN",
-            "file://{0}/isoamsn.ent".format(ent_dir),
+            f"file://{ent_dir}/isoamsn.ent",
             docbook,
         )
         xmlcatalog(
@@ -150,7 +150,7 @@ def config_docbook(self):
             "--add",
             "public",
             "ISO 8879:1986//ENTITIES Added Math Symbols: Ordinary//EN",
-            "file://{0}/isoamso.ent".format(ent_dir),
+            f"file://{ent_dir}/isoamso.ent",
             docbook,
         )
         xmlcatalog(
@@ -158,7 +158,7 @@ def config_docbook(self):
             "--add",
             "public",
             "ISO 8879:1986//ENTITIES Added Math Symbols: Relations//EN",
-            "file://{0}/isoamsr.ent".format(ent_dir),
+            f"file://{ent_dir}/isoamsr.ent",
             docbook,
         )
         xmlcatalog(
@@ -166,7 +166,7 @@ def config_docbook(self):
             "--add",
             "public",
             "ISO 8879:1986//ENTITIES Box and Line Drawing//EN",
-            "file://{0}/isobox.ent".format(ent_dir),
+            f"file://{ent_dir}/isobox.ent",
             docbook,
         )
         xmlcatalog(
@@ -174,7 +174,7 @@ def config_docbook(self):
             "--add",
             "public",
             "ISO 8879:1986//ENTITIES Russian Cyrillic//EN",
-            "file://{0}/isocyr1.ent".format(ent_dir),
+            f"file://{ent_dir}/isocyr1.ent",
             docbook,
         )
         xmlcatalog(
@@ -182,7 +182,7 @@ def config_docbook(self):
             "--add",
             "public",
             "ISO 8879:1986//ENTITIES Non-Russian Cyrillic//EN",
-            "file://{0}/isocyr2.ent".format(ent_dir),
+            f"file://{ent_dir}/isocyr2.ent",
             docbook,
         )
         xmlcatalog(
@@ -190,7 +190,7 @@ def config_docbook(self):
             "--add",
             "public",
             "ISO 8879:1986//ENTITIES Diacritical Marks//EN",
-            "file://{0}/isodia.ent".format(ent_dir),
+            f"file://{ent_dir}/isodia.ent",
             docbook,
         )
         xmlcatalog(
@@ -198,7 +198,7 @@ def config_docbook(self):
             "--add",
             "public",
             "ISO 8879:1986//ENTITIES Greek Letters//EN",
-            "file://{0}/isogrk1.ent".format(ent_dir),
+            f"file://{ent_dir}/isogrk1.ent",
             docbook,
         )
         xmlcatalog(
@@ -206,7 +206,7 @@ def config_docbook(self):
             "--add",
             "public",
             "ISO 8879:1986//ENTITIES Monotoniko Greek//EN",
-            "file://{0}/isogrk2.ent".format(ent_dir),
+            f"file://{ent_dir}/isogrk2.ent",
             docbook,
         )
         xmlcatalog(
@@ -214,7 +214,7 @@ def config_docbook(self):
             "--add",
             "public",
             "ISO 8879:1986//ENTITIES Greek Symbols//EN",
-            "file://{0}/isogrk3.ent".format(ent_dir),
+            f"file://{ent_dir}/isogrk3.ent",
             docbook,
         )
         xmlcatalog(
@@ -222,7 +222,7 @@ def config_docbook(self):
             "--add",
             "public",
             "ISO 8879:1986//ENTITIES Alternative Greek Symbols//EN",
-            "file://{0}/isogrk4.ent".format(ent_dir),
+            f"file://{ent_dir}/isogrk4.ent",
             docbook,
         )
         xmlcatalog(
@@ -230,7 +230,7 @@ def config_docbook(self):
             "--add",
             "public",
             "ISO 8879:1986//ENTITIES Added Latin 1//EN",
-            "file://{0}/isolat1.ent".format(ent_dir),
+            f"file://{ent_dir}/isolat1.ent",
             docbook,
         )
         xmlcatalog(
@@ -238,7 +238,7 @@ def config_docbook(self):
             "--add",
             "public",
             "ISO 8879:1986//ENTITIES Added Latin 2//EN",
-            "file://{0}/isolat2.ent".format(ent_dir),
+            f"file://{ent_dir}/isolat2.ent",
             docbook,
         )
         xmlcatalog(
@@ -246,7 +246,7 @@ def config_docbook(self):
             "--add",
             "public",
             "ISO 8879:1986//ENTITIES Numeric and Special Graphic//EN",
-            "file://{0}/isonum.ent".format(ent_dir),
+            f"file://{ent_dir}/isonum.ent",
             docbook,
         )
         xmlcatalog(
@@ -254,7 +254,7 @@ def config_docbook(self):
             "--add",
             "public",
             "ISO 8879:1986//ENTITIES Publishing//EN",
-            "file://{0}/isopub.ent".format(ent_dir),
+            f"file://{ent_dir}/isopub.ent",
             docbook,
         )
         xmlcatalog(
@@ -262,23 +262,23 @@ def config_docbook(self):
             "--add",
             "public",
             "ISO 8879:1986//ENTITIES General Technical//EN",
-            "file://{0}/isotech.ent".format(ent_dir),
+            f"file://{ent_dir}/isotech.ent",
             docbook,
         )
         xmlcatalog(
             "--noout",
             "--add",
             "rewriteSystem",
-            "https://www.oasis-open.org/docbook/xml/{0}".format(version),
-            "file://{0}".format(prefix),
+            f"https://www.oasis-open.org/docbook/xml/{version}",
+            f"file://{prefix}",
             docbook,
         )
         xmlcatalog(
             "--noout",
             "--add",
             "rewriteURI",
-            "https://www.oasis-open.org/docbook/xml/{0}".format(version),
-            "file://{0}".format(prefix),
+            f"https://www.oasis-open.org/docbook/xml/{version}",
+            f"file://{prefix}",
             docbook,
         )
         xmlcatalog(
@@ -286,7 +286,7 @@ def config_docbook(self):
             "--add",
             "rewriteSystem",
             "https://www.oasis-open.org/docbook/xml/current",
-            "file://{0}".format(prefix),
+            f"file://{prefix}",
             docbook,
         )
         xmlcatalog(
@@ -294,7 +294,7 @@ def config_docbook(self):
             "--add",
             "rewriteURI",
             "https://www.oasis-open.org/docbook/xml/current",
-            "file://{0}".format(prefix),
+            f"file://{prefix}",
             docbook,
         )
 
@@ -305,7 +305,7 @@ def config_docbook(self):
             "--add",
             "delegatePublic",
             "-//OASIS//ENTITIES DocBook XML",
-            "file://{0}".format(docbook),
+            f"file://{docbook}",
             catalog,
         )
         xmlcatalog(
@@ -313,23 +313,18 @@ def config_docbook(self):
             "--add",
             "delegatePublic",
             "-//OASIS//DTD DocBook XML",
-            "file://{0}".format(docbook),
+            f"file://{docbook}",
             catalog,
         )
         xmlcatalog(
-            "--noout",
-            "--add",
-            "delegatePublic",
-            "ISO 8879:1986",
-            "file://{0}".format(docbook),
-            catalog,
+            "--noout", "--add", "delegatePublic", "ISO 8879:1986", f"file://{docbook}", catalog
         )
         xmlcatalog(
             "--noout",
             "--add",
             "delegateSystem",
             "https://www.oasis-open.org/docbook/",
-            "file://{0}".format(docbook),
+            f"file://{docbook}",
             catalog,
         )
         xmlcatalog(
@@ -337,7 +332,7 @@ def config_docbook(self):
             "--add",
             "delegateURI",
             "https://www.oasis-open.org/docbook/",
-            "file://{0}".format(docbook),
+            f"file://{docbook}",
             catalog,
         )
 
@@ -348,40 +343,40 @@ def config_docbook(self):
                 "--noout",
                 "--add",
                 "public",
-                "-//OASIS//DTD DocBook XML V{0}//EN".format(dtversion),
-                "http://www.oasis-open.org/docbook/xml/{0}/docbookx.dtd".format(dtversion),
+                f"-//OASIS//DTD DocBook XML V{dtversion}//EN",
+                f"http://www.oasis-open.org/docbook/xml/{dtversion}/docbookx.dtd",
                 docbook,
             )
             xmlcatalog(
                 "--noout",
                 "--add",
                 "rewriteSystem",
-                "http://www.oasis-open.org/docbook/xml/{0}".format(dtversion),
-                "file://{0}".format(prefix),
+                f"http://www.oasis-open.org/docbook/xml/{dtversion}",
+                f"file://{prefix}",
                 docbook,
             )
             xmlcatalog(
                 "--noout",
                 "--add",
                 "rewriteURI",
-                "http://www.oasis-open.org/docbook/xml/{0}".format(dtversion),
-                "file://{0}".format(prefix),
+                f"http://www.oasis-open.org/docbook/xml/{dtversion}",
+                f"file://{prefix}",
                 docbook,
             )
             xmlcatalog(
                 "--noout",
                 "--add",
                 "delegateSystem",
-                "http://www.oasis-open.org/docbook/xml/{0}".format(dtversion),
-                "file://{0}".format(docbook),
+                f"http://www.oasis-open.org/docbook/xml/{dtversion}",
+                f"file://{docbook}",
                 catalog,
             )
             xmlcatalog(
                 "--noout",
                 "--add",
                 "delegateURI",
-                "http://www.oasis-open.org/docbook/xml/{0}".format(dtversion),
-                "file://{0}".format(docbook),
+                f"http://www.oasis-open.org/docbook/xml/{dtversion}",
+                f"file://{docbook}",
                 catalog,
             )
 

var/spack/repos/builtin/packages/doxygen/package.py

@@ -20,6 +20,8 @@ class Doxygen(CMakePackage):
 
     license("GPL-2.0-or-later")
 
+    version("1.11.0", sha256="1fea49c69e51fec3dd2599947f6d48d9b1268bd5115b1bb08dffefc1fd5d19ee")
+    version("1.10.0", sha256="795692a53136ca9bb9a6cd72656968af7858a78be7d6d011e12ab1dce6b9533c")
     version("1.9.8", sha256="77371e8a58d22d5e03c52729844d1043e9cbf8d0005ec5112ffa4c8f509ddde8")
     version("1.9.7", sha256="691777992a7240ed1f822a5c2ff2c4273b57c1cf9fc143553d87f91a0c5970ee")
     version("1.9.6", sha256="2a3ee47f7276b759f74bac7614c05a1296a5b028d3f6a79a88e4c213db78e7dc")
@@ -76,6 +78,11 @@ def determine_variants(cls, exes, version_str):
         return variants
 
     depends_on("cmake@2.8.12:", type="build")
+    depends_on("cmake@3.2:", type="build", when="@1.8.16:")
+    depends_on("cmake@3.3:", type="build", when="@1.8.18:")
+    depends_on("cmake@3.12:", type="build", when="@1.9.8:")
+    depends_on("cmake@3.14:", type="build", when="@1.10:")
+
     depends_on("python", type="build")  # 2 or 3 OK; used in CMake build
     depends_on("iconv")
     depends_on("flex", type="build")
@@ -85,6 +92,10 @@ def determine_variants(cls, exes, version_str):
     depends_on("flex@2.5.39", type="build", when="@1.8.10")
     depends_on("bison@2.7:", type="build", when="@1.8.10:")
 
+    # originally bundled dependencies
+    depends_on("spdlog", when="@1.9.8:")
+    depends_on("sqlite", when="@1.10:")
+
     # optional dependencies
     depends_on("graphviz", when="+graphviz", type="run")
     depends_on("mscgen", when="+mscgen", type="run")
@@ -108,6 +119,13 @@ def determine_variants(cls, exes, version_str):
         when="@1.9.4 %gcc@12:",
     )
 
+    # https://github.com/doxygen/doxygen/pull/10896: use correct option name with system sqlite3
+    patch(
+        "https://github.com/doxygen/doxygen/commit/83de58c5f4f685a129127c2501f4fccd9557f6c4.patch?full_index=1",
+        sha256="8b46b763b3f0a2726f765141cbfa3eb6efd746531a4d689531e42ff56fc334e2",
+        when="@1.10:1.11.0",
+    )
+
     # Some GCC 7.x get stuck in an infinite loop
     conflicts("%gcc@7.0:7.9", when="@1.9:")
 
@@ -124,3 +142,9 @@ def patch(self):
             join_path("cmake", "FindIconv.cmake"),
             string=True,
         )
+
+    def cmake_args(self):
+        return [
+            self.define("use_sys_spdlog", self.spec.satisfies("@1.9.8:")),
+            self.define("use_sys_sqlite3", self.spec.satisfies("@1.10:")),
+        ]

var/spack/repos/builtin/packages/e2fsprogs/package.py

@@ -15,14 +15,38 @@ class E2fsprogs(AutotoolsPackage):
 
     license("GPL-2.0-or-later AND LGPL-2.0-or-later AND BSD-3-Clause AND MIT")
 
+    version("1.47.1", sha256="db95ff1cb6ef741c9aa8875d9f3f52a34168360febba765b6377b80bada09a8c")
+    version("1.47.0", sha256="74c8ea97c73294edc6c11dc5e7fbb4324f86c28efd66ad0ba50be4eec8a48be2")
     version("1.45.6", sha256="d785164a2977cd88758cb0cac5c29add3fe491562a60040cfb193abcd0f9609b")
     version("1.45.5", sha256="0fd76e55c1196c1d97a2c01f2e84f463b8e99484541b43ff4197f5a695159fd3")
 
+    variant("fuse2fs", default=False, description="Build fuse2fs")
+
     depends_on("texinfo", type="build")
+    depends_on("fuse", when="+fuse2fs")
+
+    # fuse3 support is in the yet unreleased 1.47.1
+    patch(
+        "https://github.com/tytso/e2fsprogs/commit/5598a96.patch?full_index=1",
+        sha256="72b28eb4599dbae45a01a1518ab6b8b6fc23db4f67381b49f63d3a3d45822340",
+        when="@:1.47.0 +fuse2fs",
+    )
+    patch(
+        "https://github.com/tytso/e2fsprogs/commit/1ac0061.patch?full_index=1",
+        sha256="c5fbcd4e6d7f29d083d923b33998d916e2059b8f108c8cc20e8b5c928186eef2",
+        when="@:1.47.0 +fuse2fs",
+    )
+    patch(
+        "https://github.com/tytso/e2fsprogs/commit/448a3f8.patch?full_index=1",
+        sha256="fb45c3af229b49fab19c70c00c33b9f3579a9455025aedb8049ff411b1cf3a96",
+        when="@:1.47.0 +fuse2fs",
+    )
 
     def setup_run_environment(self, env):
         env.prepend_path("PATH", self.prefix.sbin)
 
     def configure_args(self):
         # avoid installing things in /etc
-        return ["--without-udev-rules-dir", "--without-crond-dir", "--without-systemd-unit-dir"]
+        args = ["--without-udev-rules-dir", "--without-crond-dir", "--without-systemd-unit-dir"]
+        args.extend(self.enable_or_disable("fuse2fs"))
+        return args

var/spack/repos/builtin/packages/ecp-proxy-apps/package.py

@@ -53,7 +53,6 @@ class EcpProxyApps(BundlePackage):
     depends_on("picsarlite@0.1", when="@2.0:")
     depends_on("thornado-mini@1.0", when="@2.0:")
 
-    depends_on("candle-benchmarks@0.1", when="+candle @2.0:2.1")
     depends_on("laghos@2.0", when="@2.0:2.1")
     depends_on("macsio@1.1", when="@2.0:")
     depends_on("sw4lite@1.1", when="@2.0:")
@@ -71,7 +70,6 @@ class EcpProxyApps(BundlePackage):
 
     # Dependencies for versions 1.0:1.1
     depends_on("amg2013@1.0", when="@1.0:1.1")
-    depends_on("candle-benchmarks@0.0", when="+candle @1.0:1.1")
     depends_on("laghos@1.0", when="@1.0:1.1")
     depends_on("macsio@1.0", when="@1.0:1.1")
     depends_on("miniamr@1.4.0", when="@1.0:1.1")

var/spack/repos/builtin/packages/elfutils/package.py

@@ -27,6 +27,7 @@ class Elfutils(AutotoolsPackage, SourcewarePackage):
 
     license("GPL-3.0-or-later AND ( GPL-2.0-or-later OR LGPL-3.0-or-later )")
 
+    version("0.191", sha256="df76db71366d1d708365fc7a6c60ca48398f14367eb2b8954efc8897147ad871")
     version("0.190", sha256="8e00a3a9b5f04bc1dc273ae86281d2d26ed412020b391ffcc23198f10231d692")
     version("0.189", sha256="39bd8f1a338e2b7cd4abc3ff11a0eddc6e690f69578a57478d8179b4148708c8")
     version("0.188", sha256="fb8b0e8d0802005b9a309c60c1d8de32dd2951b56f0c3a3cb56d21ce01595dff")

var/spack/repos/builtin/packages/er/package.py

@@ -65,8 +65,5 @@ def cmake_args(self):
 
         if spec.satisfies("@0.1.0:"):
             args.append(self.define_from_variant("BUILD_SHARED_LIBS", "shared"))
-        else:
-            if spec.satisfies("platform=cray"):
-                args.append(self.define("ER_LINK_STATIC", True))
 
         return args

var/spack/repos/builtin/packages/faust/package.py

@@ -16,6 +16,7 @@ class Faust(MakefilePackage):
 
     license("GPL-2.0-or-later")
 
+    version("2.72.14", sha256="f0c82b7e72b663c29c226e5a56f6c43595b7d02c3d63eca0103cd327df4f33cd")
     version("2.70.3", sha256="644484f95167fe63014eac3db410f50c58810289fea228a2221e07d27da50eec")
     version("2.54.9", sha256="14648f020d77874e6f7411d7ff605820015645bbd4b891b24bee3d3a898e48d2")
     version("2.27.2", sha256="3367a868a93b63582bae29ab8783f1df7a10f4084a2bc1d2258ebf3d6a8c31d7")

var/spack/repos/builtin/packages/filo/package.py

@@ -26,8 +26,6 @@ class Filo(CMakePackage):
     def cmake_args(self):
         args = []
         args.append("-DMPI_C_COMPILER=%s" % self.spec["mpi"].mpicc)
-        if self.spec.satisfies("platform=cray"):
-            args.append("-DFILO_LINK_STATIC=ON")
         args.append("-DWITH_AXL_PREFIX=%s" % self.spec["axl"].prefix)
         args.append("-DWITH_KVTREE_PREFIX=%s" % self.spec["kvtree"].prefix)
         args.append("-DWITH_SPATH_PREFIX=%s" % self.spec["spath"].prefix)

var/spack/repos/builtin/packages/flatbuffers/package.py

@@ -14,6 +14,7 @@ class Flatbuffers(CMakePackage):
 
     license("Apache-2.0")
 
+    version("24.3.25", sha256="4157c5cacdb59737c5d627e47ac26b140e9ee28b1102f812b36068aab728c1ed")
     version("24.3.7", sha256="bfff9d2150fcff88f844e8c608b02b2a0e94c92aea39b04c0624783464304784")
     version("2.0.6", sha256="e2dc24985a85b278dd06313481a9ca051d048f9474e0f199e372fea3ea4248c9")
     version("2.0.0", sha256="9ddb9031798f4f8754d00fca2f1a68ecf9d0f83dfac7239af1311e4fd9a565c4")

var/spack/repos/builtin/packages/flux-sched/package.py

@@ -24,6 +24,7 @@ class FluxSched(CMakePackage, AutotoolsPackage):
     license("LGPL-3.0-only")
 
     version("master", branch="master")
+    version("0.34.0", sha256="10c03d78fa2302de7ddf9599ea59fb7a2dc7ccf6f526fd9fbfc9e3ff6ba39713")
     version("0.33.1", sha256="d0a1e504226d69fa8a247e9090d94ccc5e5f5fb028aab805f9cd95379bd8b1b3")
     version("0.33.0", sha256="d2e97121aed29bb1c6bfac602d890edb2f0a18d5303205b266a33c66fff1d61c")
     version("0.32.0", sha256="f0b88881f0154057de3dd5485a3e1cfc0b9b64c98052bda7d5fed7c05b5e02f3")
@@ -73,6 +74,7 @@ class FluxSched(CMakePackage, AutotoolsPackage):
     depends_on("yaml-cpp@0.6.3")
     depends_on("uuid")
     depends_on("pkgconfig")
+    conflicts("%gcc@:9.3", when="@0.34:")
     depends_on("py-sphinx@1.6.3:", when="+docs", type="build")
 
     depends_on("flux-core", type=("build", "link", "run"))

var/spack/repos/builtin/packages/fms/package.py

@@ -19,7 +19,15 @@ class Fms(CMakePackage):
     license("LGPL-3.0-or-later")
 
     maintainers("AlexanderRichert-NOAA", "Hang-Lei-NOAA", "edwardhartnett", "rem1776", "climbfuji")
+    version(
+        "2024.01.01", sha256="41c8686bad2b1aed76275e35cbe1af855f7dfce9b6d8907744ea2e8174758f6a"
+    )
+    version("2024.01", sha256="29ac23a5a2a4765ae66d218bb261cb04f7ad44618205ab0924c4e66c9ef8fa38")
     version("2023.04", sha256="feb895ea2b3269ca66df296199a36af335f0dc281e2dab2f1bfebb19fd9c22c4")
+    version("2023.03", sha256="008a9ff394efe6a8adbcf37dd45ca103e00ae25748fc2960b7bc54f2f3b08d85")
+    version(
+        "2023.02.01", sha256="1597f7a485d02e401ce76444b2401060d74bd032cbb060cef917f001b4ff14bc"
+    )
     version("2023.02", sha256="dc029ffadfd82c334f104268bedd8635c77976485f202f0966ae4cf06d2374be")
     version(
         "2023.01.01", sha256="f83e2814a1e3ba439ab847ec8bb251f3889d5ca14fb20849507590adbbe8e899"

var/spack/repos/builtin/packages/font-util/package.py

@@ -221,7 +221,6 @@ class FontUtil(AutotoolsPackage, XorgPackage):
             when="fonts=" + f,
         )
 
-        conflicts("fonts=font-bh-ttf", when="platform=cray")
         conflicts("fonts=font-bh-ttf", when="arch=linux-rhel7-broadwell")
 
         if f != "font-bh-ttf":

var/spack/repos/builtin/packages/freeglut/package.py

@@ -27,16 +27,12 @@ class Freeglut(CMakePackage, SourceforgePackage):
     # FreeGLUT does not support OSMesa
     conflicts("^osmesa")
 
-    # FreeGLUT only works with GLX on linux (cray is also linux)
+    # FreeGLUT only works with GLX on linux
     with when("platform=linux"):
         depends_on("glx")
         depends_on("libx11")
         depends_on("libxi")
         depends_on("libxxf86vm")
-    with when("platform=cray"):
-        depends_on("glx")
-        depends_on("libx11")
-        depends_on("libxi")
 
     # freeglut 3.2.1 fails to build with -fno-common (default with newer compilers)
     # see https://bugs.gentoo.org/705840 and https://github.com/dcnieho/FreeGLUT/pull/76

var/spack/repos/builtin/packages/freetype/package.py

@@ -44,7 +44,7 @@ class Freetype(AutotoolsPackage, CMakePackage):
 
     depends_on("bzip2")
     depends_on("libpng")
-    for plat in ["linux", "darwin", "cray"]:
+    for plat in ["linux", "darwin"]:
         depends_on("pkgconfig", type="build", when="platform=%s" % plat)
 
     conflicts(

var/spack/repos/builtin/packages/fujitsu-mpi/package.py

@@ -54,6 +54,12 @@ def setup_dependent_package(self, module, dependent_spec):
             self.spec.mpifc = self.prefix.bin.mpifrt
 
     def setup_dependent_build_environment(self, env, dependent_spec):
+        # Use the spack compiler wrappers under MPI
+        dependent_module = dependent_spec.package.module
+        env.set("OMPI_CC", dependent_module.spack_cc)
+        env.set("OMPI_CXX", dependent_module.spack_cxx)
+        env.set("OMPI_FC", dependent_module.spack_fc)
+        env.set("OMPI_F77", dependent_module.spack_f77)
         if self.spec.satisfies("%gcc"):
             env.set("MPI_C_COMPILER", self.prefix.bin.mpicc)
             env.set("MPI_CXX_COMPILER", self.prefix.bin.mpicxx)