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Author SHA1 Message Date
Harmen Stoppels
ba6cb62df8 Set version to v0.22.3 2024-11-18 12:47:11 +01:00
Harmen Stoppels
e1437349d1 getting_started.rst: fix list of spack deps (#47557) 2024-11-18 12:47:11 +01:00
Harmen Stoppels
c1eb3f965b libc.py: detect glibc also in chinese locale (#47434) 2024-11-18 12:47:11 +01:00
Massimiliano Culpo
e0d246210f Fix pickle round-trip of specs propagating variants (#47351)
This changes `Spec` serialization to include information about propagation for abstract specs.
This was previously not included in the JSON representation for abstract specs, and couldn't be
stored.

Now, there is a separate `propagate` dictionary alongside the `parameters` dictionary. This isn't
beautiful, but when we bump the spec version for Spack `v0.24`, we can clean up this and other
aspects of the schema.
2024-11-18 12:47:11 +01:00
Harmen Stoppels
88b47d2714 spack_yaml: add anchorify function (#44995)
This adds spack.util.spack_yaml.anchorify, which takes a non-cyclic
dict/list structure, and replaces identical values with (back)
references to the first instance, so that yaml serialization will use
anchors.

`repr` is used to identify sub-dags, which in principle is quadratic
complexity in depth of the graph, but in practice the depth is O(1) so
this should not matter.

Then this is used in CI to reduce the size of generated YAML files to
30% of their original size.
2024-11-18 12:47:11 +01:00
Harmen Stoppels
342520175d database.py: remove process unsafe update_explicit (#47358)
Fixes an issue reported where `spack env depfile` + `make -j` would
non-deterministically refuse to mark all environment roots explicit.

`update_explicit` had the pattern

```python
rec = self._data[key]
with self.write_transaction():
    rec.explicit = explicit
```

but `write_transaction` may reinitialize `self._data`, meaning that
mutating `rec` won't mutate `self._data`, and the changes won't be
persisted.

Instead, use `mark` which has a correct implementation.

Also avoids the essentially incorrect early return in `update_explicit`
which is a pattern I don't think belongs in database.py: it branches on
possibly stale data to realize there is nothing to change, but in reality
it requires a write transaction to know that for a fact, but that would
defeat the purpose. So, leave this optimization to the call site.
2024-11-18 12:47:11 +01:00
Harmen Stoppels
8a55299214 packaging_guide.rst: explain forward and backward compat before the less common cases (#47402)
The idea is to go from most to least used: backward compat -> forward compat -> pinning on major or major.minor version -> pinning specific, concrete versions.

Further, the following

```python
   # backward compatibility with Python
   depends_on("python@3.8:")
   depends_on("python@3.9:", when="@1.2:")
   depends_on("python@3.10:", when="@1.4:")

   # forward compatibility with Python
   depends_on("python@:3.12", when="@:1.10")
   depends_on("python@:3.13", when="@:1.12")
   depends_on("python@:3.14")
```

is better than disjoint when ranges causing repetition of the rules on dependencies, and requiring frequent editing of existing lines after new releases are done:

```python
   depends_on("python@3.8:3.12", when="@:1.1")
   depends_on("python@3.9:3.12", when="@1.2:1.3")
   depends_on("python@3.10:3.12", when="@1.4:1.10")
   depends_on("python@3.10:3.13", when="@1.11:1.12")
   depends_on("python@3.10:3.14", when="@1.13:")
2024-11-18 12:47:11 +01:00
Wouter Deconinck
174308ca3d ffmpeg: update patch hashes for addition of the X-Git-Tag (#45574) 2024-11-18 12:47:11 +01:00
Harmen Stoppels
506c176d25 remove xfail marked hanging foreground/background tests 2024-11-18 12:47:11 +01:00
Adam J. Stewart
88171ff353 Docs: remove reference to pyspack (#47346) 2024-11-18 12:47:11 +01:00
Harmen Stoppels
fb8f2d8301 autopush: run after install manifest is written 2024-11-18 12:47:11 +01:00
Todd Gamblin
27beb100e1 mypy: work around typing issues with functools.partial (#47160) 2024-11-18 12:47:11 +01:00
Alex Hedges
02613d778d Remove trailing spaces in default YAML files (#47328)
caught by `prettier`
2024-11-18 12:47:11 +01:00
Alex Hedges
a6065334ad Fix malformed RST link in documentation (#47309) 2024-11-18 12:47:11 +01:00
Alex Hedges
243ee7203a Fix errors found by running spack audit externals (#47308)
The problem was that `+` is part of the regex grammar, so it needs to be
escaped.
2024-11-18 12:47:11 +01:00
Alex Hedges
271106e5dd Fix typo in default concretizer.yaml (#47307)
This was caught by `codespell` when I copied the config file into an
internal repository.
2024-11-18 12:47:11 +01:00
Harmen Stoppels
9fb9156e82 bootstrap: do not consider source when metadata file missing (#47278) 2024-11-18 12:47:11 +01:00
Harmen Stoppels
d88cfbd839 compilers.yaml: require list of strings for modules (#47197) 2024-11-18 12:47:11 +01:00
Harmen Stoppels
4127a93a91 ensure write_fd.close() isn't called when sys.std* cannot be redirected 2024-11-18 12:47:11 +01:00
Harmen Stoppels
5df2189e43 Avoid a socket to communicate effectively a bit 2024-11-18 12:47:11 +01:00
Harmen Stoppels
667c1960d0 Replace MultiProcessFd with Connection objects
Connection objects are Python version, platform and multiprocessing
start method independent, so better to use those than a mix of plain
file descriptors and inadequate guesses in the child process whether it
was forked or not.

This also allows us to delete the now redundant MultiProcessFd class,
hopefully making things a bit easier to follow.
2024-11-18 12:47:11 +01:00
Harmen Stoppels
4449058257 fix use of traceback.format_exception (#47080)
Co-authored-by: Peter Scheibel <scheibel1@llnl.gov>
2024-11-18 12:47:11 +01:00
Todd Gamblin
1b03f1d5bc Better docs and typing for _setup_pkg_and_run (#46709)
There was a bit of mystery surrounding the arguments for `_setup_pkg_and_run`. It passes
two file descriptors for handling the `gmake`'s job server in child processes, but they are
unsed in the method.

It turns out that there are good reasons to do this -- depending on the multiprocessing
backend, these file descriptors may be closed in the child if they're not passed
directly to it.

- [x] Document all args to `_setup_pkg_and_run`.
- [x] Document all arguments to `_setup_pkg_and_run`.
- [x] Add type hints for `_setup_pkg_and_run`.
- [x] Refactor exception handling in `_setup_pkg_and_run` so it's easier to add type
      hints. `exc_info()` was problematic because it *can* return `None` (just not
      in the context where it's used).  `mypy` was too dumb to notice this.

Signed-off-by: Todd Gamblin <tgamblin@llnl.gov>
2024-11-18 12:47:11 +01:00
Harmen Stoppels
cf4e9cb3b3 installer.py: handle external roots the same (#44917)
There was logic not to enqueue build requests for externals if they occur as
roots. That's unnecessary.
2024-11-18 12:47:11 +01:00
Harmen Stoppels
d189b12050 installer: improve init signature and explicits (#44374)
Change the installer to take `([pkg], args)` in the constructor instead
of `[(pkg, args)]`. The reason is that certain arguments are global
settings, and the new API ensures that those arguments cannot be
different across different "build requests".

The `explicit` install arg is now a list of hashes, and the installer is
no longer responsible for determining what package is installed
explicitly. This way environment installs can simply pass the list of
environment roots, without them necessarily being explicit build
requests. For example an env with two roots [a, b], where b depends on
a, would not always cause spack install to mark b as explicit.

Notice that `overwrite` already took a list of hashes, this makes
`explicit` consistent.

`package.do_install(explicit=True)` continues to take a boolean.
2024-11-18 12:47:11 +01:00
Massimiliano Culpo
5134504fd8 Fix broken spack find -u (#47102)
fixes #47101

The bug was introduced in #33495, where `spack find was not updated,
and wasn't caught by unit tests.

Now a Database can accept a custom predicate to select the installation
records. A unit test is added to prevent regressions. The weird convention
of having `any` as a default value has been replaced by the more commonly
used `None`.

Signed-off-by: Massimiliano Culpo <massimiliano.culpo@gmail.com>
2024-11-18 12:47:11 +01:00
Harmen Stoppels
ae5018ee09 python: drop build-tools tag (#46980)
Remove the `build-tools` tag of python, otherwise these types of
concretizations are possible:

```
py-root
  ^py-pip
    ^python@3.12
  ^python@3.13
```

So, a package would be configured with py-pip using python 3.12, but
installed for 3.13, which does not work.
2024-11-18 12:47:11 +01:00
Harmen Stoppels
106ebeb502 Show underlying errors on fetch failure (#45714)
- unwrap/flatten nested exceptions
- improve tests
- unify curl lookup
2024-11-18 12:47:11 +01:00
Harmen Stoppels
ba89754ee1 buildcache: recognize . and .. as paths instead of names (#47105) 2024-11-18 12:47:11 +01:00
Harmen Stoppels
e733eb0fd9 docs: do not promote build_systems/* at all (#47111) 2024-11-18 12:47:11 +01:00
Harmen Stoppels
07b344bf10 docs: tune ranking further (#47110)
promote hand-written docs, demote generated "docs" for sources, modules, packages.
2024-11-18 12:47:11 +01:00
Harmen Stoppels
a71c65399e docs search: rank api lowest and generated commands low (#47107) 2024-11-18 12:47:11 +01:00
Harmen Stoppels
d8b73331f6 bootstrap: remove all system gnupg/patchelf executables (#47165) 2024-11-18 12:47:11 +01:00
Peter Scheibel
4741ea683c avoid double closing of fd in sub-processes (#47035)
Both `multiprocessing.connection.Connection.__del__` and `io.IOBase.__del__` called `os.close` on the same file descriptor. As of Python 3.13, this is an explicit warning. Ensure we close once by usef `os.fdopen(..., closefd=False)`
2024-11-18 12:47:11 +01:00
Harmen Stoppels
f33c18290b tests: fix wrong install name (#46711) 2024-11-18 12:47:11 +01:00
Massimiliano Culpo
5ea67e8882 archspec: update to v0.2.5 (#46958)
Signed-off-by: Massimiliano Culpo <massimiliano.culpo@gmail.com>
2024-11-18 12:47:11 +01:00
Massimiliano Culpo
8ade071253 Bump archspec 0.2.5-dev (#46503)
Use commit bceb39528ac49dd0c876b2e9bf3e7482e9c2be4a
2024-11-18 12:47:11 +01:00
Tobias Ribizel
dca09e6e0f env depfile: generate Makefile with absolute script path (#46966)
Co-authored-by: Harmen Stoppels <harmenstoppels@gmail.com>
2024-11-18 12:47:11 +01:00
Harmen Stoppels
2776402c90 Update release documentation (#46991) 2024-11-18 12:47:11 +01:00
Harmen Stoppels
3961a86f86 support python 3.13 bootstrapping from sources (#46983) 2024-11-18 12:47:11 +01:00
Harmen Stoppels
39e594d096 clingo: fix build with Python 3.13+ (#46775)
Python 3.9 deprecated `PyEval_InitThreads` and kept it as a no-op, and
Python 3.13 deleted the function.

The patch removes calls to it.
2024-11-18 12:47:11 +01:00
Harmen Stoppels
7a91bed5c9 Set version to v0.22.3.dev0 2024-11-18 12:47:11 +01:00
Harmen Stoppels
594a376c52 Set version to v0.22.2 2024-09-21 12:39:55 +02:00
Harmen Stoppels
1538c48616 run-unit-tests: no xdist if coverage (#46480)
xdist only slows down unit tests under coverage
2024-09-21 12:39:55 +02:00
Massimiliano Culpo
683e50b8d9 Run unit test in parallel again in CI (#45793)
The --trace-config option was failing for linux unit-tests,
so we were running serial.
2024-09-21 12:39:55 +02:00
Harmen Stoppels
9b32fb0beb Revert "Change environment modifications to escape with double quotes (#36789)" (#42780)
This reverts commit 690394fabc, as it causes arbitrary code execution.
2024-09-21 12:39:55 +02:00
Harmen Stoppels
2c6df0d491 deal with TimeoutError from ssl.py (#45683) 2024-09-21 12:39:55 +02:00
Harmen Stoppels
ce7218acae buildcache: fix hard-coded, outdated layout version (#45645) 2024-09-21 12:39:55 +02:00
Dominic Hofer
246eeb2b69 Remove execution permission from setup-env.sh (#45641)
`setup-env.sh` is meant to be sourced, not executed directly.
By revoking execution permissions, users who accidentally execute
the script will receive an error instead of seeing no effect.

* Remove execution permission from `setup-env.sh` and friends
* Don't make output file executable in `spack commands --update-completion`

---------

Co-authored-by: Todd Gamblin <tgamblin@llnl.gov>
Signed-off-by: Todd Gamblin <tgamblin@llnl.gov>
2024-09-21 12:39:55 +02:00
Harmen Stoppels
cc47ee3984 unparser.py: remove print statements (#45235) 2024-09-21 12:39:55 +02:00
Harmen Stoppels
7b644719c1 Avoid duplicate detectable tag (#45160)
in case of inheritance the static tags prop may be updated multiple
times, and it turns out builder classes magically inherit from
traditional package classes
2024-09-21 12:39:55 +02:00
Harmen Stoppels
d8a6aa551e build_environment: explicitly disable ccache if disabled (#45275) 2024-09-21 12:39:55 +02:00
Massimiliano Culpo
ac7b18483a Bump archspec to latest commit (#46445)
This should fix an issue with Neoverse XX detection

Signed-off-by: Massimiliano Culpo <massimiliano.culpo@gmail.com>
2024-09-21 12:39:55 +02:00
Massimiliano Culpo
39f37de4ce Update archspec to v0.2.5-dev (7e6740012b897ae4a950f0bba7e9726b767e921f) (#45721) 2024-09-21 12:39:55 +02:00
Harmen Stoppels
703e153404 require spec in develop entry (#46485) 2024-09-21 12:39:55 +02:00
Harmen Stoppels
aa013611bc url join: fix oci scheme (#46483)
* url.py: also special case oci scheme in join

* avoid fetching keys from oci mirror
2024-09-21 12:39:55 +02:00
Harmen Stoppels
6a7ccd4e46 docs: refer to upstreams.yaml in chain.rst title (#46475) 2024-09-21 12:39:55 +02:00
Harmen Stoppels
1c6c4b4690 spack.util.url: fix join breakage in python 3.12.6 (#46453) 2024-09-21 12:39:55 +02:00
arezaii
68558b3dd0 Chapel package: updates post release (#45304)
* Fix +rocm variant, to ensure correct dependencies on ROCm packages
  and use of AMD LLVM
* Add a +pshm variant for comm=gasnet to enable fast shared-memory
  comms between co-locales
* Add logic to ensure we get the native CXI libfabric network provider
  on Cray EX
* Expand dependency type for package modules to encompass runtime
  dependencies
* Factor logic for setting (LD_)LIBRARY_PATH and PKG_CONFIG_PATH of
  runtime dependencies
* Workaround issue #44746 that causes a transitive dependency on lua
  to break SLURM
* Disable nonfunctional checkChplDoc test
* Annotate some variants as conditional, to improve spack info output
  and reduce confusion

---------

Co-authored-by: Dan Bonachea <dobonachea@lbl.gov>
2024-09-21 12:39:55 +02:00
arezaii
5440fe09cd update chapel package for v2.1 (#44931) 2024-09-21 12:39:55 +02:00
arezaii
03c22f403f Chapel package: major update (#42197)
* add cray detection taken from upcxx
* add CUDA/ROCm support
* add numerous pass-through options to Chapel build,
  like gpu_mem_strategy, comm_substrate, etc.; all variants are
  translated to analogous CHPL_* environment variables. As a side
  effect, this defines a number of environment variables that are
  not actually used by Chapel.
* Define LD_LIBRARY_PATH, LIBRARY_PATH, and PKG_CONFIG_PATH to
  help programs built with Chapel properly locate needed runtime
  dependencies

---------

Co-authored-by: bonachea <dobonachea@lbl.gov>
2024-09-21 12:39:55 +02:00
Greg Becker
f339225d22 include_concrete: read from older env formats properly (#45766)
* include_concrete: read from older env formats properly
* spack env rm: fix logic for checking env includes
* regression test

Signed-off-by: Todd Gamblin <tgamblin@llnl.gov>
2024-09-21 12:39:55 +02:00
Massimiliano Culpo
22c815f3d4 Do not halt concretization on unknown variants in externals (#45326)
* Do not halt concretization on unkwnown variants in externals
2024-09-21 12:39:55 +02:00
Massimiliano Culpo
4354288e44 Run minimization of weights only on known targets (#45269)
This prevents excessive output from clingo of the kind:

.../spack/lib/spack/spack/solver/concretize.lp:1640:5-11: info: tuple ignored:
  #sup@2
2024-09-21 12:39:55 +02:00
Massimiliano Culpo
ea2d43b4a6 Do not initialize previous store state in "use_store" (#45268)
The "use_store" context manager is used to swap the value
of a global variable (spack.store.STORE), while keeping
another global variable consistent (spack.config.CONFIG).

When doing that it tries to evaluate the previous value
of the store, if that was not done already. This is wrong,
since the configuration might be in an "intermediate" state
that was never meant to trigger side effects.

Remove that operation, and add a unit test to
prevent regressions.
2024-09-21 12:39:55 +02:00
Massimiliano Culpo
85e67d60a0 Add compatibility of sequoia with previous macOS versions (#45127)
* Add compatibility of sequoia with previous macOS versions

* Add compatibility of sequoia with previous macOS versions
2024-09-21 12:39:55 +02:00
Adam J. Stewart
bf6a9ff5ed Add support for macOS Sequoia (#45018) 2024-09-21 12:39:55 +02:00
Jordan Galby
1bdc30979d Fix regression in spec format string for indiviual variants (#46206)
Fix a regression in {variants.X} and {variants.X.value} spec format strings.
2024-09-21 12:39:55 +02:00
Harmen Stoppels
ef1eabe5b3 Add c to the list of languages (#45191) 2024-09-21 12:39:55 +02:00
Harmen Stoppels
43d673f915 Add pkg- prefix to builtin.mock a b c d ... (#45205) 2024-09-21 12:39:55 +02:00
Harmen Stoppels
8a9c501030 spec.py: fix __getitem__ looking outside of dag (#45090)
`Spec.__getitem__` queries dependent edges, which almost always point to
nodes outside the sub-dag considered. It should only ever look at edges
being traversed.
2024-09-21 12:39:55 +02:00
Harmen Stoppels
9f035ca030 Set version to v0.22.2.dev0 2024-09-21 12:39:55 +02:00
Harmen Stoppels
d66dce2d66 Set version to v0.22.1 2024-07-04 15:14:09 +02:00
Jordan Galby
ef2aa2f5f5 spack audit packages: Fix message (#45045)
Fix message formatting of the "virtual dependency cannot have variants" error.
2024-07-04 15:13:31 +02:00
Harmen Stoppels
41f5f6eaab iconv: require libiconv on linux (#45026)
otherwise it is still picked up from glibc as it is external
2024-07-04 15:07:05 +02:00
Massimiliano Culpo
cba347e0b7 Heuristic decays to default over time (#45023)
This modifies heuristic to decay to clingo default
over time. The hope is that this helps with specs
that have an optimal solution with a high penalty.

Let target and compiler heuristic decay too, do not
guess compiler
2024-07-04 15:07:05 +02:00
Harmen Stoppels
a3cef0f02e netlib-lapack: provide blas and lapack together (#44981)
If netlib-lapack is built with ~external-blas, it internally links
liblapack.so with libblas.so, meaning that whenever netlib-lapack is
used as a lapack provider, the package must also be a blas provider.

Conversely using netli-lapack as a blas provider does not imply that it
also must provide lapack, but nothing is lost disallowing that...
2024-07-01 16:56:31 +02:00
Harmen Stoppels
45fca040c3 Use composite stage also for develop specs (#44950) 2024-07-01 16:56:31 +02:00
Harmen Stoppels
eb2b5739b2 Remove DIYStage (#44949) 2024-07-01 16:56:31 +02:00
Massimiliano Culpo
d299e17d43 neoverse-v1: restore py-cinemasci (#44976)
Use a different tactic for determining conflicts.

Give more priority to setting False very old versions.
2024-07-01 16:56:31 +02:00
Massimiliano Culpo
d883883be0 Ensure parent runtime version >= child (#44834)
Fixes a bug where old gcc-runtime libraries would be loaded at runtime, but newer are required by dependencies, breaking the binaries.
2024-07-01 16:56:31 +02:00
Massimiliano Culpo
249dcb49e2 ASP-based solver: add a generic rule for propagation (#44870)
This adds a generic propagate/2 rule to propagate any
fact to children in the DAG.
2024-07-01 16:56:31 +02:00
Massimiliano Culpo
8628add66b Simplify and improve solver heuristic (#44893)
When we changed how to deal with errors in November,
we didn't realize that for an unconstrained choice
rule it is more important in the heuristic to guess
what is NOT in the answer set, since it will be the
majority of options.

Previously this was following automatically from what
was in the answer set, via `1 { ... } 1` cardinality
constraints.

Here we improve the heuristic and the solve time for specs.
2024-07-01 16:56:31 +02:00
Harmen Stoppels
aeccba8bc0 build_environment: fix ccache error handling (#44740) 2024-07-01 16:56:31 +02:00
Todd Gamblin
d94e8ab36f python: make every view a venv (#44382)
#40773 introduced python-venv, which improved build isolation and avoids issues with,
e.g., `ubuntu`'s system python modifying `sysconfig` to include a (very unwanted)
`local` directory within the default install layout.

This addresses a few cases where #40773 removed functionality, without harming the
default cases where we use `python-venv`.

Traditionally, *every* view with `python` in it was essentially a virtual environment,
because we would copy the `python` interpreter and `os.py` into every view when linking.
We now rely on `python-venv` to do that, but only when it's used (i.e. new builds) and
only for packages that have an `extends("python")` directive.

This again makes every view with `python` in it a virtual environment, but only
if we're not already using a package like `python-venv`. This uses a different
mechanism from before -- instead of using the `virtualenv` trick of copying `python`
into the prefix, we instead create a `pyvenv.cfg` like `venv` (the more modern way
to do it).

This fixes two things:
1. If you already had an environment before Spack `v0.22` that worked, it would
   stop working without a reconcretize and rebuild in `v0.22`, because we no longer
   copy the python interpreter on link. Adding `pyvenv.cfg` fixes this in a more
   modern way, so old views will keep working.

2. If you have an env that only includes python packages that use `depends_on("python")`
   instead of `extends("python")`, those packages will now be importable as before,
   though they won't have the same level of build isolation you'd get with `extends`
   and `python-venv`.

* views: avoid making client code deal with link functions

Users of views and ViewDescriptors shouldn't have to deal with link functions -- they
should just say what type of linking they want.

- [x] views take a link_type, not a link function
- [x] views work out the link function from the link type
- [x] view descriptors and commands now just tell the view what they want.

* python: simplify logic for avoiding pyvenv.cfg in copy views

Signed-off-by: Todd Gamblin <tgamblin@llnl.gov>
2024-07-01 16:56:31 +02:00
Massimiliano Culpo
e66c26871f Move unit tests into the same file, simplify main workflow 2024-07-01 16:56:31 +02:00
kwryankrattiger
2db4ff7061 Generate jobs should use x86_64_v3 runners only (#44582) 2024-07-01 16:56:31 +02:00
Tom Bradford
c248932a94 protobuf: fix 3.4:3.21 patch checksum (#44443) 2024-07-01 16:56:31 +02:00
dmagdavector
f15d302fc7 protobuf: update hash for patch needed when="@3.4:3.21" (#44210)
* protobuf: update hash for patch needed when="@3.4:3.21"

* Update var/spack/repos/builtin/packages/protobuf/package.py

Co-authored-by: Wouter Deconinck <wdconinc@gmail.com>

* Update var/spack/repos/builtin/packages/protobuf/package.py

Co-authored-by: Wouter Deconinck <wdconinc@gmail.com>

---------

Co-authored-by: Wouter Deconinck <wdconinc@gmail.com>
2024-07-01 16:56:31 +02:00
John W. Parent
74ef630241 Windows: Non config changes to support Gitlab CI (#43965)
* Quote python for shlex

* Remove python path quoting patch

* spack env: Allow `C` "protocol" for config_path

When running spack on windows, a path beginning with `C://...` is a valid path.

* Remove makefile from ci rebuild

* GPG use llnl.util.filesystem.getuid

* Cleanup process_command

* Remove unused lines

* Fix tyop in encode_path

* Double quote arguments

* Cleanup process_command

* Pass cdash args with =

* Escape parens in CMD script

* escape parens doesn't only apply to paths

* Install deps

* sfn prefix

* use sfn with libxml2

* Add hash to dep install

* WIP

* REview

* Changes missed in prior review commit

* Style

* Ensure we handle Windows paths with config scopes

* clarify docstring

* No more MAKE_COMMAND

* syntax cleanup

* Actually correct is_path_url

* Correct call

* raise on other errors

* url2path behaves differently on unix

* Ensure proper quoting

* actually prepend slash in slash_hash

---------

Co-authored-by: Ryan Krattiger <ryan.krattiger@kitware.com>
Co-authored-by: Mike VanDenburgh <michael.vandenburgh@kitware.com>
2024-07-01 16:56:31 +02:00
John W. Parent
a70ea11e69 Gitlab CI: Windows Configs (#43967)
Add support for Gitlab CI on Windows

This PR adds the config changes required to configure and execute
Gitlab pipelines running Windows builds on Windows runners using
the existing Gitlab CI infrastructure (and newly added Windows 
infrastructure).

* Adds support for generating child pipelines dispatched to Windows runners
* Refactors the relevant pre-scripts, scripts, and post scripts to be compatible with Windows
* Adds Windows config section describing Windows jobs
* Adds VTK as Windows build stack (to be expanded later)
* Modifies proj to build on Windows
* Refactors Windows rpath symlinking to avoid system libs and externals

---------

Co-authored-by: Ryan Krattiger <ryan.krattiger@kitware.com>
Co-authored-by: Mike VanDenburgh <michael.vandenburgh@kitware.com>
Co-authored-by: Todd Gamblin <tgamblin@llnl.gov>
Co-authored-by: Scott Wittenburg <scott.wittenburg@kitware.com>
2024-07-01 16:56:31 +02:00
John W. Parent
a79b1bd9af Buildcache/ensure symlinks proper prefix (#43851)
* archive: relative links only

Ensure all links written into tarfiles generated from Spack prefixes do not contain symlinks pointing outside the prefix

* binary_distribution: limit extraction to prefix

Ensure files extracted from spackballs are not links pointing outside of the prefix

* Ensure rpaths are properly set on Windows

* hard error on extraction of absolute links

* refactor for non link-modifying approach

* Restore tarball extraction to original impl

* use custom readlink

* cleanup symlink module

* make lstrip
2024-07-01 16:56:31 +02:00
John W. Parent
ac5d5485b9 Cdash reporting timeout (#44213)
* Add timeout to cdash reporter PUT request

Add cdash timeout everywhere
Correct mock responder api

* Style

* brief doc
2024-07-01 16:56:31 +02:00
John W. Parent
04258f9cce Prefer llnl.util.symlink.readlink to os.readlink (#44126)
Symlinks on Windows can use longpath prefixes (\\?\); these are fine
in the context of win32 API interactions but break numerous facets of
Spack behavior that rely on string parsing/matching (archiving,
binary distributions, tarball extraction, view regen, etc).

Spack's internal readlink method (llnl.util.symlink.readlink)
gracefully handles this by removing the prefix and otherwise behaving
exactly as os.readlink does, so we should prefer that in all cases.
2024-07-01 16:56:31 +02:00
Scott Wittenburg
1b14170bd1 gitlab ci: fix untouched spec pruning on windows (#44279)
Use correct path separator in get_all_package_diffs for all platforms.
Ensures correct package change computation on Windows when pruning unchanged specs in Gitlab CI
2024-07-01 16:56:31 +02:00
Massimiliano Culpo
a3bc9dbfe8 Make strong preferences even stronger (#44373)
Before this PR, if Spack could see a possibility to reuse a spec that
doesn't match a strong preference, it would do so. After the PR, a
strong preference would take precedence.
2024-07-01 16:56:31 +02:00
Greg Becker
e7c86259bd bugfix: external detection for compilers with os but not target (#44156)
avoid calling `spec.target` when None.

When an external compiler package has an `os` set but no `target` set, Spack
currently falls into a codepath that calls `spec.target` (which itself calls
`spec.architecture.target.Microarchitecture`) when `spec.architecture.target`
is None, throwing an error.

e.g.

```
packages:
  gcc:
    externals:
    - spec: gcc@12.3.1 os=rhel7
      prefix: /usr
```

---------

Co-authored-by: Todd Gamblin <tgamblin@llnl.gov>
2024-07-01 16:56:31 +02:00
Massimiliano Culpo
2605aeb072 ASP-based solver: fix reusing externals on linux (#44316)
We need to tell clingo the libc compatibility of external nodes
in buildcaches or stores, to allow reuse.
2024-07-01 16:56:31 +02:00
Massimiliano Culpo
94536d2b66 Enforce consistency of gl providers (#44307)
* glew: rework dependency on gl

This simplifies the package and ensures a single gl implementation is
pulled in. Before we were adding direct dependencies, and those are
not unified through the virtual.

* mesa-demos: rework dependency on gl

This simplifies the package and ensures a single gl implementation is
pulled in. Before we were adding direct dependencies, and those are
not unified through the virtual.

* mesa-glu: rework dependency on gl

This simplifies the package and ensures a single gl implementation is
pulled in. Before we were adding direct dependencies, and those are
not unified through the virtual.

* paraview: fix dependency on glew

* mesa: group dependency on when("+glx")

* Add missing dependency on libxml2

* paraview: remove the "osmesa" and "egl" variant

Instead, enforce consistency using the "gl" virtual that allows
only one provider.

* visit: remove osmesa variant

* Disable paraview in the aws-isc stacks

* data-vis-sdk: rework constrains to enforce front-ends

* e4s-power: remove redundant paraview

* Pipelines: update osmesa variants

* trilinos-catalyst-ioss-adapter: make gl a run dependency
2024-07-01 16:56:31 +02:00
Massimiliano Culpo
5e580fc82e Remove mesa18 and libosmesa (#44264)
* Remove mesa18 and libosmesa

mesa18 was introduced in #19528 as a way to maintain the old
autotools build of mesa separate from the new meson build.

We could add a second build system to mesa, but since mesa18 has
been deprecated for a long time, we'll just remove it.

libosmesa was used to multiplex the gl provider between mesa18
and mesa, and is thus unecessary. Remove it to reduce complexity
in the graphical stack.

* Remove references to mesa18 and libosmesa

* vtk: rework dependency on gl and osmesa

* memsurfer: rework dependency on vtk

* visit: minimal fix to avoid having both osmesa and glx
2024-07-01 16:56:31 +02:00
Harmen Stoppels
195bad8675 Prefer libiconv for iconv (#44335)
`glibc` and `musl` provide a basic implementation of `iconv` (`iconv`,
`iconv_open`, `iconv_close`), but in practice the installation may be
missing the character encoding methods to make them usable. On Fedora
for example, users need to

```yum install glibc-gconv-extra```

to get the character encodings that `gettext` requires during configure,
namely EUC-JP. Users may not have permissions to install the missing
parts of glibc.

Since Spack can install `libiconv`, it is simpler to use that by
default.
2024-07-01 16:56:31 +02:00
Harmen Stoppels
bd9f3f100a gcc: use -rpath {rpath_dir} not -rpath={rpath dir} (#44315)
to make macOS's linker happy.
2024-07-01 16:56:31 +02:00
Mosè Giordano
b5962613a0 suite-sparse: improve setting of the libs property (#44214)
on some distros it is in lib64/
2024-07-01 16:56:31 +02:00
Massimiliano Culpo
cbcfc7e10a Demote a warning to debug message, if C compiler is not there (#44182) 2024-07-01 16:56:31 +02:00
Massimiliano Culpo
579fadacd0 ASP-based solver: fix version optimization for roots (#44272)
This fixes a bug occurring when two root specs need to select
old versions, and these versions have the same penalty in the
optimization. This sometimes caused an older version to be
preferred to a more recent one.

The issue was the omission of `PackageNode` in the optimization
tuple.
2024-07-01 16:56:31 +02:00
Chris Green
b86d08b022 git: bump v2.39 to 2.45; deprecate unsafe versions (#44248) 2024-07-01 16:56:31 +02:00
Scott Wittenburg
02d62cf40f oci buildcache: handle pagination of tags (#43136)
This fixes an issue where ghcr, gitlab and possibly other container registries paginate tags by default, which violates the OCI spec v1.0, but is common practice (the spec was broken itself). After this commit, you can create build cache indices of > 100 specs on ghcr.

Co-authored-by: Harmen Stoppels <me@harmenstoppels.nl>
2024-07-01 16:56:31 +02:00
Harmen Stoppels
97369776f0 build_environment.py: deal with rpathing identical packages (#44219)
When multiple gcc-runtime packages exist in the same link sub-dag, only rpath
the latest.
2024-07-01 16:56:31 +02:00
Howard Pritchard
47af0159dc py-matplotlib: qualify when to do a post install (#44191)
* py-matplotlib: qualify when to do a post install

Older versions of py-matplotlib don't seem to have some of the
files that the post install step is trying to install.
Looks like the files first appeared in 3.6.0 and later.

Signed-off-by: Howard Pritchard <hppritcha@gmail.com>

* Change install paths for older matplotlib

---------

Signed-off-by: Howard Pritchard <hppritcha@gmail.com>
Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>
2024-07-01 16:56:31 +02:00
Alec Scott
db6ead6fc1 rust: fix v1.78.0 instructions (#44127) 2024-07-01 16:56:31 +02:00
Harmen Stoppels
b4aa2c3cab glibc: detect from "Free Software Foundation" not "gnu" (#44154)
which should be more generic
2024-07-01 16:56:31 +02:00
Harmen Stoppels
4108de1ce4 Set version to v0.22.1.dev0 2024-07-01 16:56:31 +02:00
Todd Gamblin
5fe93fee1e Update CHANGELOG.md for v0.22.0 2024-05-12 02:06:28 +02:00
Todd Gamblin
8207f11333 Bump version to v0.22 2024-05-11 17:54:12 +02:00
Todd Gamblin
5bb5d2696f changelog: add changes form 0.21.1 and 0.21.2 (#44136)
These changes were added to the release branch but did not make it onto `develop`.
2024-05-11 17:48:27 +02:00
Harmen Stoppels
55f37dffe5 oci: improve default_retry (#44132)
Apparently urllib can throw a range of different exceptions:

1. HTTPError
2. URLError with e.reason set to the actual exception
3. TimeoutError from getresponse, which is not wrapped
2024-05-11 15:44:40 +02:00
Harmen Stoppels
252a5bd71b PythonExtension: fix issue where package does not extend python (#44109) 2024-05-10 10:48:06 +02:00
Massimiliano Culpo
f55224f161 Fix filtering external specs (#44093)
When an include filter on externals is present, implicitly
include libcs.

Also, do not penalize deprecated versions if they come
from externals.
2024-05-09 20:48:43 +02:00
Massimiliano Culpo
189ae4b06e CI/Update macOS runners: macos-latest switched to macos-14 (#44094)
macos-latest switched to macos-14, so now we are running
two identical jobs.
2024-05-09 20:48:43 +02:00
Harmen Stoppels
5e9c702fa7 gcc: use -idirafter for libc headers (#44081)
GCC C++ headers like cstdlib use `#include_next <stdlib.h>` to wrap libc
headers. We're using `-isystem` for libc, which puts those headers too
early in the search path. `-idirafter` fixes this so `include_next`
works.
2024-05-08 20:45:39 +02:00
Harmen Stoppels
965bb4d3c0 gitlab ci: tutorial: add julia and vim (#44073) 2024-05-08 14:19:22 +02:00
Todd Gamblin
354f98c94a r: patch R-CVE-2024-27322 for r@3.5:4.3.3 (#44050)
Signed-off-by: Todd Gamblin <tgamblin@llnl.gov>
2024-05-08 14:19:22 +02:00
Tamara Dahlgren
5dce480154 Remove dead environment creation code (#44065) 2024-05-08 14:19:22 +02:00
Richarda Butler
f634d48b7c Include concrete environments with include_concrete (#33768)
Add the ability to include any number of (potentially nested) concrete environments, e.g.:

```yaml
   spack:
     specs: []
     concretizer:
         unify: true
     include_concrete:
     - /path/to/environment1
     - /path/to/environment2
```

or, from the CLI:

```console
   $ spack env create myenv
   $ spack -e myenv add python
   $ spack -e myenv concretize
   $ spack env create --include-concrete myenv included_env
```

The contents of included concrete environments' spack.lock files are
included in the environment's lock file at creation time. Any changes
to included concrete environments are only reflected after the environment
is re-concretized from the re-concretized included environments.

- [x] Concretize included envs
- [x] Save concrete specs in memory by hash
- [x] Add included envs to combined env's lock file
- [x] Add test
- [x] Update documentation

    Co-authored-by: Kayla Butler <<butler59@llnl.gov>
    Co-authored-by: Tamara Dahlgren <35777542+tldahlgren@users.noreply.github.co
m>
    Co-authored-by: Todd Gamblin <tgamblin@llnl.gov>
    Signed-off-by: Todd Gamblin <tgamblin@llnl.gov>
2024-05-08 14:19:22 +02:00
Massimiliano Culpo
4daee565ae Update the tutorial command to point to releases/v0.22 (#44056) 2024-05-08 14:19:22 +02:00
Massimiliano Culpo
8e4dbdc2d7 Bump removal version in deprecation messages (#44064) 2024-05-08 14:19:22 +02:00
Harmen Stoppels
4f6adc03cd gitlab: dont build paraview for neoverse v2 (#44060) 2024-05-08 14:19:22 +02:00
1234 changed files with 12658 additions and 14974 deletions

View File

@@ -28,7 +28,7 @@ jobs:
run:
shell: ${{ matrix.system.shell }}
steps:
- uses: actions/checkout@a5ac7e51b41094c92402da3b24376905380afc29
- uses: actions/checkout@0ad4b8fadaa221de15dcec353f45205ec38ea70b
- uses: actions/setup-python@82c7e631bb3cdc910f68e0081d67478d79c6982d
with:
python-version: ${{inputs.python_version}}
@@ -61,7 +61,7 @@ jobs:
./share/spack/qa/validate_last_exit.ps1
spack -d audit externals
./share/spack/qa/validate_last_exit.ps1
- uses: codecov/codecov-action@e28ff129e5465c2c0dcc6f003fc735cb6ae0c673
- uses: codecov/codecov-action@5ecb98a3c6b747ed38dc09f787459979aebb39be
if: ${{ inputs.with_coverage == 'true' }}
with:
flags: unittests,audits

View File

@@ -37,7 +37,7 @@ jobs:
make patch unzip which xz python3 python3-devel tree \
cmake bison
- name: Checkout
uses: actions/checkout@a5ac7e51b41094c92402da3b24376905380afc29
uses: actions/checkout@0ad4b8fadaa221de15dcec353f45205ec38ea70b
with:
fetch-depth: 0
- name: Bootstrap clingo
@@ -53,31 +53,27 @@ jobs:
runs-on: ${{ matrix.runner }}
strategy:
matrix:
runner: ['macos-13', 'macos-14', "ubuntu-latest", "windows-latest"]
runner: ['macos-13', 'macos-14', "ubuntu-latest"]
steps:
- name: Setup macOS
if: ${{ matrix.runner != 'ubuntu-latest' && matrix.runner != 'windows-latest' }}
if: ${{ matrix.runner != 'ubuntu-latest' }}
run: |
brew install cmake bison tree
- name: Checkout
uses: actions/checkout@a5ac7e51b41094c92402da3b24376905380afc29
uses: actions/checkout@0ad4b8fadaa221de15dcec353f45205ec38ea70b
with:
fetch-depth: 0
- uses: actions/setup-python@82c7e631bb3cdc910f68e0081d67478d79c6982d
with:
python-version: "3.12"
- name: Bootstrap clingo
env:
SETUP_SCRIPT_EXT: ${{ matrix.runner == 'windows-latest' && 'ps1' || 'sh' }}
SETUP_SCRIPT_SOURCE: ${{ matrix.runner == 'windows-latest' && './' || 'source ' }}
USER_SCOPE_PARENT_DIR: ${{ matrix.runner == 'windows-latest' && '$env:userprofile' || '$HOME' }}
run: |
${{ env.SETUP_SCRIPT_SOURCE }}share/spack/setup-env.${{ env.SETUP_SCRIPT_EXT }}
source share/spack/setup-env.sh
spack bootstrap disable github-actions-v0.5
spack bootstrap disable github-actions-v0.4
spack external find --not-buildable cmake bison
spack -d solve zlib
tree ${{ env.USER_SCOPE_PARENT_DIR }}/.spack/bootstrap/store/
tree ~/.spack/bootstrap/store/
gnupg-sources:
runs-on: ${{ matrix.runner }}
@@ -87,14 +83,14 @@ jobs:
steps:
- name: Setup macOS
if: ${{ matrix.runner != 'ubuntu-latest' }}
run: brew install tree gawk
- name: Remove system executables
run: |
brew install tree gawk
sudo rm -rf $(command -v gpg gpg2)
- name: Setup Ubuntu
if: ${{ matrix.runner == 'ubuntu-latest' }}
run: sudo rm -rf $(command -v gpg gpg2 patchelf)
while [ -n "$(command -v gpg gpg2 patchelf)" ]; do
sudo rm $(command -v gpg gpg2 patchelf)
done
- name: Checkout
uses: actions/checkout@a5ac7e51b41094c92402da3b24376905380afc29
uses: actions/checkout@0ad4b8fadaa221de15dcec353f45205ec38ea70b
with:
fetch-depth: 0
- name: Bootstrap GnuPG
@@ -114,16 +110,14 @@ jobs:
steps:
- name: Setup macOS
if: ${{ matrix.runner != 'ubuntu-latest' }}
run: brew install tree
- name: Remove system executables
run: |
brew install tree
# Remove GnuPG since we want to bootstrap it
sudo rm -rf /usr/local/bin/gpg
- name: Setup Ubuntu
if: ${{ matrix.runner == 'ubuntu-latest' }}
run: |
sudo rm -rf $(which gpg) $(which gpg2) $(which patchelf)
while [ -n "$(command -v gpg gpg2 patchelf)" ]; do
sudo rm $(command -v gpg gpg2 patchelf)
done
- name: Checkout
uses: actions/checkout@a5ac7e51b41094c92402da3b24376905380afc29
uses: actions/checkout@0ad4b8fadaa221de15dcec353f45205ec38ea70b
with:
fetch-depth: 0
- uses: actions/setup-python@82c7e631bb3cdc910f68e0081d67478d79c6982d

View File

@@ -56,7 +56,7 @@ jobs:
if: github.repository == 'spack/spack'
steps:
- name: Checkout
uses: actions/checkout@a5ac7e51b41094c92402da3b24376905380afc29
uses: actions/checkout@0ad4b8fadaa221de15dcec353f45205ec38ea70b
- uses: docker/metadata-action@8e5442c4ef9f78752691e2d8f8d19755c6f78e81
id: docker_meta

View File

@@ -36,7 +36,7 @@ jobs:
core: ${{ steps.filter.outputs.core }}
packages: ${{ steps.filter.outputs.packages }}
steps:
- uses: actions/checkout@a5ac7e51b41094c92402da3b24376905380afc29
- uses: actions/checkout@0ad4b8fadaa221de15dcec353f45205ec38ea70b
if: ${{ github.event_name == 'push' }}
with:
fetch-depth: 0

View File

@@ -14,7 +14,7 @@ jobs:
build-paraview-deps:
runs-on: windows-latest
steps:
- uses: actions/checkout@a5ac7e51b41094c92402da3b24376905380afc29
- uses: actions/checkout@0ad4b8fadaa221de15dcec353f45205ec38ea70b
with:
fetch-depth: 0
- uses: actions/setup-python@82c7e631bb3cdc910f68e0081d67478d79c6982d

View File

@@ -1,7 +1,7 @@
black==24.4.2
clingo==5.7.1
flake8==7.1.0
flake8==7.0.0
isort==5.13.2
mypy==1.8.0
types-six==1.16.21.20240513
types-six==1.16.21.9
vermin==1.6.0

View File

@@ -51,7 +51,7 @@ jobs:
on_develop: false
steps:
- uses: actions/checkout@a5ac7e51b41094c92402da3b24376905380afc29
- uses: actions/checkout@0ad4b8fadaa221de15dcec353f45205ec38ea70b
with:
fetch-depth: 0
- uses: actions/setup-python@82c7e631bb3cdc910f68e0081d67478d79c6982d
@@ -91,7 +91,7 @@ jobs:
UNIT_TEST_COVERAGE: ${{ matrix.python-version == '3.11' }}
run: |
share/spack/qa/run-unit-tests
- uses: codecov/codecov-action@e28ff129e5465c2c0dcc6f003fc735cb6ae0c673
- uses: codecov/codecov-action@5ecb98a3c6b747ed38dc09f787459979aebb39be
with:
flags: unittests,linux,${{ matrix.concretizer }}
token: ${{ secrets.CODECOV_TOKEN }}
@@ -100,7 +100,7 @@ jobs:
shell:
runs-on: ubuntu-latest
steps:
- uses: actions/checkout@a5ac7e51b41094c92402da3b24376905380afc29
- uses: actions/checkout@0ad4b8fadaa221de15dcec353f45205ec38ea70b
with:
fetch-depth: 0
- uses: actions/setup-python@82c7e631bb3cdc910f68e0081d67478d79c6982d
@@ -124,7 +124,7 @@ jobs:
COVERAGE: true
run: |
share/spack/qa/run-shell-tests
- uses: codecov/codecov-action@e28ff129e5465c2c0dcc6f003fc735cb6ae0c673
- uses: codecov/codecov-action@5ecb98a3c6b747ed38dc09f787459979aebb39be
with:
flags: shelltests,linux
token: ${{ secrets.CODECOV_TOKEN }}
@@ -141,7 +141,7 @@ jobs:
dnf install -y \
bzip2 curl file gcc-c++ gcc gcc-gfortran git gnupg2 gzip \
make patch tcl unzip which xz
- uses: actions/checkout@a5ac7e51b41094c92402da3b24376905380afc29
- uses: actions/checkout@0ad4b8fadaa221de15dcec353f45205ec38ea70b
- name: Setup repo and non-root user
run: |
git --version
@@ -160,7 +160,7 @@ jobs:
clingo-cffi:
runs-on: ubuntu-latest
steps:
- uses: actions/checkout@a5ac7e51b41094c92402da3b24376905380afc29
- uses: actions/checkout@0ad4b8fadaa221de15dcec353f45205ec38ea70b
with:
fetch-depth: 0
- uses: actions/setup-python@82c7e631bb3cdc910f68e0081d67478d79c6982d
@@ -185,7 +185,7 @@ jobs:
SPACK_TEST_SOLVER: clingo
run: |
share/spack/qa/run-unit-tests
- uses: codecov/codecov-action@e28ff129e5465c2c0dcc6f003fc735cb6ae0c673
- uses: codecov/codecov-action@5ecb98a3c6b747ed38dc09f787459979aebb39be
with:
flags: unittests,linux,clingo
token: ${{ secrets.CODECOV_TOKEN }}
@@ -198,7 +198,7 @@ jobs:
os: [macos-13, macos-14]
python-version: ["3.11"]
steps:
- uses: actions/checkout@a5ac7e51b41094c92402da3b24376905380afc29
- uses: actions/checkout@0ad4b8fadaa221de15dcec353f45205ec38ea70b
with:
fetch-depth: 0
- uses: actions/setup-python@82c7e631bb3cdc910f68e0081d67478d79c6982d
@@ -223,7 +223,7 @@ jobs:
$(which spack) solve zlib
common_args=(--dist loadfile --tx '4*popen//python=./bin/spack-tmpconfig python -u ./bin/spack python' -x)
$(which spack) unit-test --verbose --cov --cov-config=pyproject.toml --cov-report=xml:coverage.xml "${common_args[@]}"
- uses: codecov/codecov-action@e28ff129e5465c2c0dcc6f003fc735cb6ae0c673
- uses: codecov/codecov-action@5ecb98a3c6b747ed38dc09f787459979aebb39be
with:
flags: unittests,macos
token: ${{ secrets.CODECOV_TOKEN }}
@@ -254,7 +254,7 @@ jobs:
./share/spack/qa/validate_last_exit.ps1
coverage combine -a
coverage xml
- uses: codecov/codecov-action@e28ff129e5465c2c0dcc6f003fc735cb6ae0c673
- uses: codecov/codecov-action@125fc84a9a348dbcf27191600683ec096ec9021c
with:
flags: unittests,windows
token: ${{ secrets.CODECOV_TOKEN }}

View File

@@ -18,7 +18,7 @@ jobs:
validate:
runs-on: ubuntu-latest
steps:
- uses: actions/checkout@a5ac7e51b41094c92402da3b24376905380afc29
- uses: actions/checkout@0ad4b8fadaa221de15dcec353f45205ec38ea70b
- uses: actions/setup-python@82c7e631bb3cdc910f68e0081d67478d79c6982d
with:
python-version: '3.11'
@@ -35,7 +35,7 @@ jobs:
style:
runs-on: ubuntu-latest
steps:
- uses: actions/checkout@a5ac7e51b41094c92402da3b24376905380afc29
- uses: actions/checkout@0ad4b8fadaa221de15dcec353f45205ec38ea70b
with:
fetch-depth: 0
- uses: actions/setup-python@82c7e631bb3cdc910f68e0081d67478d79c6982d
@@ -70,7 +70,7 @@ jobs:
dnf install -y \
bzip2 curl file gcc-c++ gcc gcc-gfortran git gnupg2 gzip \
make patch tcl unzip which xz
- uses: actions/checkout@a5ac7e51b41094c92402da3b24376905380afc29
- uses: actions/checkout@0ad4b8fadaa221de15dcec353f45205ec38ea70b
- name: Setup repo and non-root user
run: |
git --version

View File

@@ -14,3 +14,26 @@ sphinx:
python:
install:
- requirements: lib/spack/docs/requirements.txt
search:
ranking:
spack.html: -10
spack.*.html: -10
llnl.html: -10
llnl.*.html: -10
_modules/*: -10
command_index.html: -9
basic_usage.html: 5
configuration.html: 5
config_yaml.html: 5
packages_yaml.html: 5
build_settings.html: 5
environments.html: 5
containers.html: 5
mirrors.html: 5
module_file_support.html: 5
repositories.html: 5
binary_caches.html: 5
chain.html: 5
pipelines.html: 5
packaging_guide.html: 5

View File

@@ -1,3 +1,416 @@
# v0.22.3 (2024-11-18)
## Bugfixes
- Forward compatibility with Python 3.13 (#46775, #46983, #47035, #47175)
- `archspec` was updated to v0.2.5 (#46503, #46958)
- Fix path to Spack in `spack env depfile` makefile (#46966)
- Fix `glibc` detection in Chinese locales (#47434)
- Fix pickle round-trip of specs propagating variants (#47351)
- Fix a bug where concurrent spack install commands would not always update explicits correctly
(#47358)
- Fix a bug where autopush would run before all post install hooks modifying the install prefix
had run (#47329)
- Fix `spack find -u` (#47102)
- Fix a bug where sometimes the wrong Python interpreter was used for build dependencies such as
`py-setuptools` (#46980)
- Fix default config errors found by `spack audit externals` (#47308)
- Fix duplicate printing of external roots in installer (#44917)
- Fix modules schema in `compilers.yaml` (#47197)
- Reduce the size of generated YAML for Gitlab CI (#44995)
- Handle missing metadata file gracefully in bootstrap (#47278)
- Show underlying errors on fetch failure (#45714)
- Recognize `.` and `..` as paths instead of names in buildcache commands (#47105)
- Documentation and style (#46991, #47107, #47110, #47111, #47346, #47307, #47309, #47328, #47160,
#47402, #47557, #46709, #47080)
- Tests and CI fixes (#47165, #46711)
## Package updates
- ffmpeg: fix hash of patch (#45574)
# v0.22.2 (2024-09-21)
## Bugfixes
- Forward compatibility with Spack 0.23 packages with language dependencies (#45205, #45191)
- Forward compatibility with `urllib` from Python 3.12.6+ (#46453, #46483)
- Bump vendored `archspec` for better aarch64 support (#45721, #46445)
- Support macOS Sequoia (#45018, #45127)
- Fix regression in `{variants.X}` and `{variants.X.value}` format strings (#46206)
- Ensure shell escaping of environment variable values in load and activate commands (#42780)
- Fix an issue where `spec[pkg]` considers specs outside the current DAG (#45090)
- Do not halt concretization on unknown variants in externals (#45326)
- Improve validation of `develop` config section (#46485)
- Explicitly disable `ccache` if turned off in config, to avoid cache pollution (#45275)
- Improve backwards compatibility in `include_concrete` (#45766)
- Fix issue where package tags were sometimes repeated (#45160)
- Make `setup-env.sh` "sourced only" by dropping execution bits (#45641)
- Make certain source/binary fetch errors recoverable instead of a hard error (#45683)
- Remove debug statements in package hash computation (#45235)
- Remove redundant clingo warnings (#45269)
- Remove hard-coded layout version (#45645)
- Do not initialize previous store state in `use_store` (#45268)
- Docs improvements (#46475)
## Package updates
- `chapel` major update (#42197, #44931, #45304)
# v0.22.1 (2024-07-04)
## Bugfixes
- Fix reuse of externals on Linux (#44316)
- Ensure parent gcc-runtime version >= child (#44834, #44870)
- Ensure the latest gcc-runtime is rpath'ed when multiple exist among link deps (#44219)
- Improve version detection of glibc (#44154)
- Improve heuristics for solver (#44893, #44976, #45023)
- Make strong preferences override reuse (#44373)
- Reduce verbosity when C compiler is missing (#44182)
- Make missing ccache executable an error when required (#44740)
- Make every environment view containing `python` a `venv` (#44382)
- Fix external detection for compilers with os but no target (#44156)
- Fix version optimization for roots (#44272)
- Handle common implementations of pagination of tags in OCI build caches (#43136)
- Apply fetched patches to develop specs (#44950)
- Avoid Windows wrappers for filesystem utilities on non-Windows (#44126)
- Fix issue with long filenames in build caches on Windows (#43851)
- Fix formatting issue in `spack audit` (#45045)
- CI fixes (#44582, #43965, #43967, #44279, #44213)
## Package updates
- protobuf: fix 3.4:3.21 patch checksum (#44443)
- protobuf: update hash for patch needed when="@3.4:3.21" (#44210)
- git: bump v2.39 to 2.45; deprecate unsafe versions (#44248)
- gcc: use -rpath {rpath_dir} not -rpath={rpath dir} (#44315)
- Remove mesa18 and libosmesa (#44264)
- Enforce consistency of `gl` providers (#44307)
- Require libiconv for iconv (#44335, #45026).
Notice that glibc/musl also provide iconv, but are not guaranteed to be
complete. Set `packages:iconv:require:[glibc]` to restore the old behavior.
- py-matplotlib: qualify when to do a post install (#44191)
- rust: fix v1.78.0 instructions (#44127)
- suite-sparse: improve setting of the `libs` property (#44214)
- netlib-lapack: provide blas and lapack together (#44981)
# v0.22.0 (2024-05-12)
`v0.22.0` is a major feature release.
## Features in this release
1. **Compiler dependencies**
We are in the process of making compilers proper dependencies in Spack, and a number
of changes in `v0.22` support that effort. You may notice nodes in your dependency
graphs for compiler runtime libraries like `gcc-runtime` or `libgfortran`, and you
may notice that Spack graphs now include `libc`. We've also begun moving compiler
configuration from `compilers.yaml` to `packages.yaml` to make it consistent with
other externals. We are trying to do this with the least disruption possible, so
your existing `compilers.yaml` files should still work. We expect to be done with
this transition by the `v0.23` release in November.
* #41104: Packages compiled with `%gcc` on Linux, macOS and FreeBSD now depend on a
new package `gcc-runtime`, which contains a copy of the shared compiler runtime
libraries. This enables gcc runtime libraries to be installed and relocated when
using a build cache. When building minimal Spack-generated container images it is
no longer necessary to install libgfortran, libgomp etc. using the system package
manager.
* #42062: Packages compiled with `%oneapi` now depend on a new package
`intel-oneapi-runtime`. This is similar to `gcc-runtime`, and the runtimes can
provide virtuals and compilers can inject dependencies on virtuals into compiled
packages. This allows us to model library soname compatibility and allows
compilers like `%oneapi` to provide virtuals like `sycl` (which can also be
provided by standalone libraries). Note that until we have an agreement in place
with intel, Intel packages are marked `redistribute(source=False, binary=False)`
and must be downloaded outside of Spack.
* #43272: changes to the optimization criteria of the solver improve the hit-rate of
buildcaches by a fair amount. The solver more relaxed compatibility rules and will
not try to strictly match compilers or targets of reused specs. Users can still
enforce the previous strict behavior with `require:` sections in `packages.yaml`.
Note that to enforce correct linking, Spack will *not* reuse old `%gcc` and
`%oneapi` specs that do not have the runtime libraries as a dependency.
* #43539: Spack will reuse specs built with compilers that are *not* explicitly
configured in `compilers.yaml`. Because we can now keep runtime libraries in build
cache, we do not require you to also have a local configured compiler to *use* the
runtime libraries. This improves reuse in buildcaches and avoids conflicts with OS
updates that happen underneath Spack.
* #43190: binary compatibility on `linux` is now based on the `libc` version,
instead of on the `os` tag. Spack builds now detect the host `libc` (`glibc` or
`musl`) and add it as an implicit external node in the dependency graph. Binaries
with a `libc` with the same name and a version less than or equal to that of the
detected `libc` can be reused. This is only on `linux`, not `macos` or `Windows`.
* #43464: each package that can provide a compiler is now detectable using `spack
external find`. External packages defining compiler paths are effectively used as
compilers, and `spack external find -t compiler` can be used as a substitute for
`spack compiler find`. More details on this transition are in
[the docs](https://spack.readthedocs.io/en/latest/getting_started.html#manual-compiler-configuration)
2. **Improved `spack find` UI for Environments**
If you're working in an enviroment, you likely care about:
* What are the roots
* Which ones are installed / not installed
* What's been added that still needs to be concretized
We've tweaked `spack find` in environments to show this information much more
clearly. Installation status is shown next to each root, so you can see what is
installed. Roots are also shown in bold in the list of installed packages. There is
also a new option for `spack find -r` / `--only-roots` that will only show env
roots, if you don't want to look at all the installed specs.
More details in #42334.
3. **Improved command-line string quoting**
We are making some breaking changes to how Spack parses specs on the CLI in order to
respect shell quoting instead of trying to fight it. If you (sadly) had to write
something like this on the command line:
```
spack install zlib cflags=\"-O2 -g\"
```
That will now result in an error, but you can now write what you probably expected
to work in the first place:
```
spack install zlib cflags="-O2 -g"
```
Quoted can also now include special characters, so you can supply flags like:
```
spack intall zlib ldflags='-Wl,-rpath=$ORIGIN/_libs'
```
To reduce ambiguity in parsing, we now require that you *not* put spaces around `=`
and `==` when for flags or variants. This would not have broken before but will now
result in an error:
```
spack install zlib cflags = "-O2 -g"
```
More details and discussion in #30634.
4. **Revert default `spack install` behavior to `--reuse`**
We changed the default concretizer behavior from `--reuse` to `--reuse-deps` in
#30990 (in `v0.20`), which meant that *every* `spack install` invocation would
attempt to build a new version of the requested package / any environment roots.
While this is a common ask for *upgrading* and for *developer* workflows, we don't
think it should be the default for a package manager.
We are going to try to stick to this policy:
1. Prioritize reuse and build as little as possible by default.
2. Only upgrade or install duplicates if they are explicitly asked for, or if there
is a known security issue that necessitates an upgrade.
With the install command you now have three options:
* `--reuse` (default): reuse as many existing installations as possible.
* `--reuse-deps` / `--fresh-roots`: upgrade (freshen) roots but reuse dependencies if possible.
* `--fresh`: install fresh versions of requested packages (roots) and their dependencies.
We've also introduced `--fresh-roots` as an alias for `--reuse-deps` to make it more clear
that it may give you fresh versions. More details in #41302 and #43988.
5. **More control over reused specs**
You can now control which packages to reuse and how. There is a new
`concretizer:reuse` config option, which accepts the following properties:
- `roots`: `true` to reuse roots, `false` to reuse just dependencies
- `exclude`: list of constraints used to select which specs *not* to reuse
- `include`: list of constraints used to select which specs *to* reuse
- `from`: list of sources for reused specs (some combination of `local`,
`buildcache`, or `external`)
For example, to reuse only specs compiled with GCC, you could write:
```yaml
concretizer:
reuse:
roots: true
include:
- "%gcc"
```
Or, if `openmpi` must be used from externals, and it must be the only external used:
```yaml
concretizer:
reuse:
roots: true
from:
- type: local
exclude: ["openmpi"]
- type: buildcache
exclude: ["openmpi"]
- type: external
include: ["openmpi"]
```
6. **New `redistribute()` directive**
Some packages can't be redistributed in source or binary form. We need an explicit
way to say that in a package.
Now there is a `redistribute()` directive so that package authors can write:
```python
class MyPackage(Package):
redistribute(source=False, binary=False)
```
Like other directives, this works with `when=`:
```python
class MyPackage(Package):
# 12.0 and higher are proprietary
redistribute(source=False, binary=False, when="@12.0:")
# can't redistribute when we depend on some proprietary dependency
redistribute(source=False, binary=False, when="^proprietary-dependency")
```
More in #20185.
7. **New `conflict:` and `prefer:` syntax for package preferences**
Previously, you could express conflicts and preferences in `packages.yaml` through
some contortions with `require:`:
```yaml
packages:
zlib-ng:
require:
- one_of: ["%clang", "@:"] # conflict on %clang
- any_of: ["+shared", "@:"] # strong preference for +shared
```
You can now use `require:` and `prefer:` for a much more readable configuration:
```yaml
packages:
zlib-ng:
conflict:
- "%clang"
prefer:
- "+shared"
```
See [the documentation](https://spack.readthedocs.io/en/latest/packages_yaml.html#conflicts-and-strong-preferences)
and #41832 for more details.
8. **`include_concrete` in environments**
You may want to build on the *concrete* contents of another environment without
changing that environment. You can now include the concrete specs from another
environment's `spack.lock` with `include_concrete`:
```yaml
spack:
specs: []
concretizer:
unify: true
include_concrete:
- /path/to/environment1
- /path/to/environment2
```
Now, when *this* environment is concretized, it will bring in the already concrete
specs from `environment1` and `environment2`, and build on top of them without
changing them. This is useful if you have phased deployments, where old deployments
should not be modified but you want to use as many of them as possible. More details
in #33768.
9. **`python-venv` isolation**
Spack has unique requirements for Python because it:
1. installs every package in its own independent directory, and
2. allows users to register *external* python installations.
External installations may contain their own installed packages that can interfere
with Spack installations, and some distributions (Debian and Ubuntu) even change the
`sysconfig` in ways that alter the installation layout of installed Python packages
(e.g., with the addition of a `/local` prefix on Debian or Ubuntu). To isolate Spack
from these and other issues, we now insert a small `python-venv` package in between
`python` and packages that need to install Python code. This isolates Spack's build
environment, isolates Spack from any issues with an external python, and resolves a
large number of issues we've had with Python installations.
See #40773 for further details.
## New commands, options, and directives
* Allow packages to be pushed to build cache after install from source (#42423)
* `spack develop`: stage build artifacts in same root as non-dev builds #41373
* Don't delete `spack develop` build artifacts after install (#43424)
* `spack find`: add options for local/upstream only (#42999)
* `spack logs`: print log files for packages (either partially built or installed) (#42202)
* `patch`: support reversing patches (#43040)
* `develop`: Add -b/--build-directory option to set build_directory package attribute (#39606)
* `spack list`: add `--namesapce` / `--repo` option (#41948)
* directives: add `checked_by` field to `license()`, add some license checks
* `spack gc`: add options for environments and build dependencies (#41731)
* Add `--create` to `spack env activate` (#40896)
## Performance improvements
* environment.py: fix excessive re-reads (#43746)
* ruamel yaml: fix quadratic complexity bug (#43745)
* Refactor to improve `spec format` speed (#43712)
* Do not acquire a write lock on the env post install if no views (#43505)
* asp.py: fewer calls to `spec.copy()` (#43715)
* spec.py: early return in `__str__`
* avoid `jinja2` import at startup unless needed (#43237)
## Other new features of note
* `archspec`: update to `v0.2.4`: support for Windows, bugfixes for `neoverse-v1` and
`neoverse-v2` detection.
* `spack config get`/`blame`: with no args, show entire config
* `spack env create <env>`: dir if dir-like (#44024)
* ASP-based solver: update os compatibility for macOS (#43862)
* Add handling of custom ssl certs in urllib ops (#42953)
* Add ability to rename environments (#43296)
* Add config option and compiler support to reuse across OS's (#42693)
* Support for prereleases (#43140)
* Only reuse externals when configured (#41707)
* Environments: Add support for including views (#42250)
## Binary caches
* Build cache: make signed/unsigned a mirror property (#41507)
* tools stack
## Removals, deprecations, and syntax changes
* remove `dpcpp` compiler and package (#43418)
* spack load: remove --only argument (#42120)
## Notable Bugfixes
* repo.py: drop deleted packages from provider cache (#43779)
* Allow `+` in module file names (#41999)
* `cmd/python`: use runpy to allow multiprocessing in scripts (#41789)
* Show extension commands with spack -h (#41726)
* Support environment variable expansion inside module projections (#42917)
* Alert user to failed concretizations (#42655)
* shell: fix zsh color formatting for PS1 in environments (#39497)
* spack mirror create --all: include patches (#41579)
## Spack community stats
* 7,994 total packages; 525 since `v0.21.0`
* 178 new Python packages, 5 new R packages
* 358 people contributed to this release
* 344 committers to packages
* 45 committers to core
# v0.21.2 (2024-03-01)
## Bugfixes
@@ -27,7 +440,7 @@
- spack graph: fix coloring with environments (#41240)
- spack info: sort variants in --variants-by-name (#41389)
- Spec.format: error on old style format strings (#41934)
- ASP-based solver:
- ASP-based solver:
- fix infinite recursion when computing concretization errors (#41061)
- don't error for type mismatch on preferences (#41138)
- don't emit spurious debug output (#41218)

View File

@@ -32,7 +32,7 @@
Spack is a multi-platform package manager that builds and installs
multiple versions and configurations of software. It works on Linux,
macOS, Windows, and many supercomputers. Spack is non-destructive: installing a
macOS, and many supercomputers. Spack is non-destructive: installing a
new version of a package does not break existing installations, so many
configurations of the same package can coexist.

View File

@@ -22,4 +22,4 @@
#
# This is compatible across platforms.
#
exec spack python "$@"
exec /usr/bin/env spack python "$@"

View File

@@ -42,8 +42,8 @@ concretizer:
# "minimal": allows the duplication of 'build-tools' nodes only (e.g. py-setuptools, cmake etc.)
# "full" (experimental): allows separation of the entire build-tool stack (e.g. the entire "cmake" subDAG)
strategy: minimal
# Option to specify compatiblity between operating systems for reuse of compilers and packages
# Specified as a key: [list] where the key is the os that is being targeted, and the list contains the OS's
# it can reuse. Note this is a directional compatibility so mutual compatibility between two OS's
# Option to specify compatibility between operating systems for reuse of compilers and packages
# Specified as a key: [list] where the key is the os that is being targeted, and the list contains the OS's
# it can reuse. Note this is a directional compatibility so mutual compatibility between two OS's
# requires two entries i.e. os_compatible: {sonoma: [monterey], monterey: [sonoma]}
os_compatible: {}

View File

@@ -0,0 +1,16 @@
# -------------------------------------------------------------------------
# This is the default configuration for Spack's module file generation.
#
# Settings here are versioned with Spack and are intended to provide
# sensible defaults out of the box. Spack maintainers should edit this
# file to keep it current.
#
# Users can override these settings by editing the following files.
#
# Per-spack-instance settings (overrides defaults):
# $SPACK_ROOT/etc/spack/modules.yaml
#
# Per-user settings (overrides default and site settings):
# ~/.spack/modules.yaml
# -------------------------------------------------------------------------
modules: {}

View File

@@ -0,0 +1,3 @@
packages:
iconv:
require: [libiconv]

View File

@@ -37,9 +37,9 @@ packages:
jpeg: [libjpeg-turbo, libjpeg]
lapack: [openblas, amdlibflame]
libc: [glibc, musl]
libgfortran: [ gcc-runtime ]
libgfortran: [gcc-runtime]
libglx: [mesa+glx]
libifcore: [ intel-oneapi-runtime ]
libifcore: [intel-oneapi-runtime]
libllvm: [llvm]
lua-lang: [lua, lua-luajit-openresty, lua-luajit]
luajit: [lua-luajit-openresty, lua-luajit]

View File

@@ -1433,12 +1433,22 @@ the reserved keywords ``platform``, ``os`` and ``target``:
$ spack install libelf os=ubuntu18.04
$ spack install libelf target=broadwell
or together by using the reserved keyword ``arch``:
.. code-block:: console
$ spack install libelf arch=cray-CNL10-haswell
Normally users don't have to bother specifying the architecture if they
are installing software for their current host, as in that case the
values will be detected automatically. If you need fine-grained control
over which packages use which targets (or over *all* packages' default
target), see :ref:`package-preferences`.
.. admonition:: Cray machines
The situation is a little bit different for Cray machines and a detailed
explanation on how the architecture can be set on them can be found at :ref:`cray-support`
.. _support-for-microarchitectures:

View File

@@ -147,15 +147,6 @@ example, the ``bash`` shell is used to run the ``autogen.sh`` script.
def autoreconf(self, spec, prefix):
which("bash")("autogen.sh")
If the ``package.py`` has build instructions in a separate
:ref:`builder class <multiple_build_systems>`, the signature for a phase changes slightly:
.. code-block:: python
class AutotoolsBuilder(AutotoolsBuilder):
def autoreconf(self, pkg, spec, prefix):
which("bash")("autogen.sh")
"""""""""""""""""""""""""""""""""""""""
patching configure or Makefile.in files
"""""""""""""""""""""""""""""""""""""""

View File

@@ -25,7 +25,7 @@ use Spack to build packages with the tools.
The Spack Python class ``IntelOneapiPackage`` is a base class that is
used by ``IntelOneapiCompilers``, ``IntelOneapiMkl``,
``IntelOneapiTbb`` and other classes to implement the oneAPI
packages. Search for ``oneAPI`` at `packages.spack.io <https://packages.spack.io>`_ for the full
packages. Search for ``oneAPI`` at `<packages.spack.io>`_ for the full
list of available oneAPI packages, or use::
spack list -d oneAPI

View File

@@ -5,14 +5,13 @@
.. chain:
============================
Chaining Spack Installations
============================
=============================================
Chaining Spack Installations (upstreams.yaml)
=============================================
You can point your Spack installation to another installation to use any
packages that are installed there. To register the other Spack instance,
you can add it as an entry to ``upstreams.yaml`` at any of the
:ref:`configuration-scopes`:
you can add it as an entry to ``upstreams.yaml``:
.. code-block:: yaml
@@ -23,8 +22,7 @@ you can add it as an entry to ``upstreams.yaml`` at any of the
install_tree: /path/to/another/spack/opt/spack
``install_tree`` must point to the ``opt/spack`` directory inside of the
Spack base directory, or the location of the ``install_tree`` defined
in :ref:`config.yaml <config-yaml>`.
Spack base directory.
Once the upstream Spack instance has been added, ``spack find`` will
automatically check the upstream instance when querying installed packages,

View File

@@ -184,7 +184,7 @@ Style Tests
Spack uses `Flake8 <http://flake8.pycqa.org/en/latest/>`_ to test for
`PEP 8 <https://www.python.org/dev/peps/pep-0008/>`_ conformance and
`mypy <https://mypy.readthedocs.io/en/stable/>` for type checking. PEP 8 is
`mypy <https://mypy.readthedocs.io/en/stable/>`_ for type checking. PEP 8 is
a series of style guides for Python that provide suggestions for everything
from variable naming to indentation. In order to limit the number of PRs that
were mostly style changes, we decided to enforce PEP 8 conformance. Your PR

View File

@@ -716,27 +716,27 @@ Release branches
^^^^^^^^^^^^^^^^
There are currently two types of Spack releases: :ref:`major releases
<major-releases>` (``0.17.0``, ``0.18.0``, etc.) and :ref:`point releases
<point-releases>` (``0.17.1``, ``0.17.2``, ``0.17.3``, etc.). Here is a
<major-releases>` (``0.21.0``, ``0.22.0``, etc.) and :ref:`patch releases
<patch-releases>` (``0.22.1``, ``0.22.2``, ``0.22.3``, etc.). Here is a
diagram of how Spack release branches work::
o branch: develop (latest version, v0.19.0.dev0)
o branch: develop (latest version, v0.23.0.dev0)
|
o
| o branch: releases/v0.18, tag: v0.18.1
| o branch: releases/v0.22, tag: v0.22.1
o |
| o tag: v0.18.0
| o tag: v0.22.0
o |
| o
|/
o
|
o
| o branch: releases/v0.17, tag: v0.17.2
| o branch: releases/v0.21, tag: v0.21.2
o |
| o tag: v0.17.1
| o tag: v0.21.1
o |
| o tag: v0.17.0
| o tag: v0.21.0
o |
| o
|/
@@ -747,8 +747,8 @@ requests target ``develop``. The ``develop`` branch will report that its
version is that of the next **major** release with a ``.dev0`` suffix.
Each Spack release series also has a corresponding branch, e.g.
``releases/v0.18`` has ``0.18.x`` versions of Spack, and
``releases/v0.17`` has ``0.17.x`` versions. A major release is the first
``releases/v0.22`` has ``v0.22.x`` versions of Spack, and
``releases/v0.21`` has ``v0.21.x`` versions. A major release is the first
tagged version on a release branch. Minor releases are back-ported from
develop onto release branches. This is typically done by cherry-picking
bugfix commits off of ``develop``.
@@ -778,27 +778,40 @@ for more details.
Scheduling work for releases
^^^^^^^^^^^^^^^^^^^^^^^^^^^^
We schedule work for releases by creating `GitHub projects
<https://github.com/spack/spack/projects>`_. At any time, there may be
several open release projects. For example, below are two releases (from
some past version of the page linked above):
We schedule work for **major releases** through `milestones
<https://github.com/spack/spack/milestones>`_ and `GitHub Projects
<https://github.com/spack/spack/projects>`_, while **patch releases** use `labels
<https://github.com/spack/spack/labels>`_.
.. image:: images/projects.png
There is only one milestone open at a time. Its name corresponds to the next major version, for
example ``v0.23``. Important issues and pull requests should be assigned to this milestone by
core developers, so that they are not forgotten at the time of release. The milestone is closed
when the release is made, and a new milestone is created for the next major release.
This image shows one release in progress for ``0.15.1`` and another for
``0.16.0``. Each of these releases has a project board containing issues
and pull requests. GitHub shows a status bar with completed work in
green, work in progress in purple, and work not started yet in gray, so
it's fairly easy to see progress.
Bug reports in GitHub issues are automatically labelled ``bug`` and ``triage``. Spack developers
assign one of the labels ``impact-low``, ``impact-medium`` or ``impact-high``. This will make the
issue appear in the `Triaged bugs <https://github.com/orgs/spack/projects/6>`_ project board.
Important issues should be assigned to the next milestone as well, so they appear at the top of
the project board.
Spack's project boards are not firm commitments so we move work between
releases frequently. If we need to make a release and some tasks are not
yet done, we will simply move them to the next minor or major release, rather
than delaying the release to complete them.
Spack's milestones are not firm commitments so we move work between releases frequently. If we
need to make a release and some tasks are not yet done, we will simply move them to the next major
release milestone, rather than delaying the release to complete them.
For more on using GitHub project boards, see `GitHub's documentation
<https://docs.github.com/en/github/managing-your-work-on-github/about-project-boards>`_.
^^^^^^^^^^^^^^^^^^^^^
Backporting bug fixes
^^^^^^^^^^^^^^^^^^^^^
When a bug is fixed in the ``develop`` branch, it is often necessary to backport the fix to one
(or more) of the ``release/vX.Y`` branches. Only the release manager is responsible for doing
backports, but Spack maintainers are responsible for labelling pull requests (and issues if no bug
fix is available yet) with ``vX.Y.Z`` labels. The label should correspond to the next patch version
that the bug fix should be backported to.
Backports are done publicly by the release manager using a pull request named ``Backports vX.Y.Z``.
This pull request is opened from the ``backports/vX.Y.Z`` branch, targets the ``releases/vX.Y``
branch and contains a (growing) list of cherry-picked commits from the ``develop`` branch.
Typically there are one or two backport pull requests open at any given time.
.. _major-releases:
@@ -806,25 +819,21 @@ For more on using GitHub project boards, see `GitHub's documentation
Making major releases
^^^^^^^^^^^^^^^^^^^^^
Assuming a project board has already been created and all required work
completed, the steps to make the major release are:
Assuming all required work from the milestone is completed, the steps to make the major release
are:
#. Create two new project boards:
#. `Create a new milestone <https://github.com/spack/spack/milestones>`_ for the next major
release.
* One for the next major release
* One for the next point release
#. `Create a new label <https://github.com/spack/spack/labels>`_ for the next patch release.
#. Move any optional tasks that are not done to one of the new project boards.
In general, small bugfixes should go to the next point release. Major
features, refactors, and changes that could affect concretization should
go in the next major release.
#. Move any optional tasks that are not done to the next milestone.
#. Create a branch for the release, based on ``develop``:
.. code-block:: console
$ git checkout -b releases/v0.15 develop
$ git checkout -b releases/v0.23 develop
For a version ``vX.Y.Z``, the branch's name should be
``releases/vX.Y``. That is, you should create a ``releases/vX.Y``
@@ -860,8 +869,8 @@ completed, the steps to make the major release are:
Create a pull request targeting the ``develop`` branch, bumping the major
version in ``lib/spack/spack/__init__.py`` with a ``dev0`` release segment.
For instance when you have just released ``v0.15.0``, set the version
to ``(0, 16, 0, 'dev0')`` on ``develop``.
For instance when you have just released ``v0.23.0``, set the version
to ``(0, 24, 0, 'dev0')`` on ``develop``.
#. Follow the steps in :ref:`publishing-releases`.
@@ -870,82 +879,52 @@ completed, the steps to make the major release are:
#. Follow the steps in :ref:`announcing-releases`.
.. _point-releases:
.. _patch-releases:
^^^^^^^^^^^^^^^^^^^^^
Making point releases
Making patch releases
^^^^^^^^^^^^^^^^^^^^^
Assuming a project board has already been created and all required work
completed, the steps to make the point release are:
To make the patch release process both efficient and transparent, we use a *backports pull request*
which contains cherry-picked commits from the ``develop`` branch. The majority of the work is to
cherry-pick the bug fixes, which ideally should be done as soon as they land on ``develop``:
this ensures cherry-picking happens in order, and makes conflicts easier to resolve since the
changes are fresh in the mind of the developer.
#. Create a new project board for the next point release.
The backports pull request is always titled ``Backports vX.Y.Z`` and is labelled ``backports``. It
is opened from a branch named ``backports/vX.Y.Z`` and targets the ``releases/vX.Y`` branch.
#. Move any optional tasks that are not done to the next project board.
Whenever a pull request labelled ``vX.Y.Z`` is merged, cherry-pick the associated squashed commit
on ``develop`` to the ``backports/vX.Y.Z`` branch. For pull requests that were rebased (or not
squashed), cherry-pick each associated commit individually. Never force push to the
``backports/vX.Y.Z`` branch.
#. Check out the release branch (it should already exist).
.. warning::
For the ``X.Y.Z`` release, the release branch is called ``releases/vX.Y``.
For ``v0.15.1``, you would check out ``releases/v0.15``:
Sometimes you may **still** get merge conflicts even if you have
cherry-picked all the commits in order. This generally means there
is some other intervening pull request that the one you're trying
to pick depends on. In these cases, you'll need to make a judgment
call regarding those pull requests. Consider the number of affected
files and/or the resulting differences.
.. code-block:: console
1. If the changes are small, you might just cherry-pick it.
$ git checkout releases/v0.15
2. If the changes are large, then you may decide that this fix is not
worth including in a patch release, in which case you should remove
the label from the pull request. Remember that large, manual backports
are seldom the right choice for a patch release.
#. If a pull request to the release branch named ``Backports vX.Y.Z`` is not already
in the project, create it. This pull request ought to be created as early as
possible when working on a release project, so that we can build the release
commits incrementally, and identify potential conflicts at an early stage.
When all commits are cherry-picked in the ``backports/vX.Y.Z`` branch, make the patch
release as follows:
#. Cherry-pick each pull request in the ``Done`` column of the release
project board onto the ``Backports vX.Y.Z`` pull request.
#. `Create a new label <https://github.com/spack/spack/labels>`_ ``vX.Y.{Z+1}`` for the next patch
release.
This is **usually** fairly simple since we squash the commits from the
vast majority of pull requests. That means there is only one commit
per pull request to cherry-pick. For example, `this pull request
<https://github.com/spack/spack/pull/15777>`_ has three commits, but
they were squashed into a single commit on merge. You can see the
commit that was created here:
#. Replace the label ``vX.Y.Z`` with ``vX.Y.{Z+1}`` for all PRs and issues that are not done.
.. image:: images/pr-commit.png
You can easily cherry pick it like this (assuming you already have the
release branch checked out):
.. code-block:: console
$ git cherry-pick 7e46da7
For pull requests that were rebased (or not squashed), you'll need to
cherry-pick each associated commit individually.
.. warning::
It is important to cherry-pick commits in the order they happened,
otherwise you can get conflicts while cherry-picking. When
cherry-picking look at the merge date,
**not** the number of the pull request or the date it was opened.
Sometimes you may **still** get merge conflicts even if you have
cherry-picked all the commits in order. This generally means there
is some other intervening pull request that the one you're trying
to pick depends on. In these cases, you'll need to make a judgment
call regarding those pull requests. Consider the number of affected
files and or the resulting differences.
1. If the dependency changes are small, you might just cherry-pick it,
too. If you do this, add the task to the release board.
2. If the changes are large, then you may decide that this fix is not
worth including in a point release, in which case you should remove
the task from the release project.
3. You can always decide to manually back-port the fix to the release
branch if neither of the above options makes sense, but this can
require a lot of work. It's seldom the right choice.
#. When all the commits from the project board are cherry-picked into
the ``Backports vX.Y.Z`` pull request, you can push a commit to:
#. Manually push a single commit with commit message ``Set version to vX.Y.Z`` to the
``backports/vX.Y.Z`` branch, that both bumps the Spack version number and updates the changelog:
1. Bump the version in ``lib/spack/spack/__init__.py``.
2. Update ``CHANGELOG.md`` with a list of the changes.
@@ -954,20 +933,22 @@ completed, the steps to make the point release are:
release branch. See `the changelog from 0.14.1
<https://github.com/spack/spack/commit/ff0abb9838121522321df2a054d18e54b566b44a>`_.
#. Merge the ``Backports vX.Y.Z`` PR with the **Rebase and merge** strategy. This
is needed to keep track in the release branch of all the commits that were
cherry-picked.
#. Make sure CI passes on the release branch, including:
#. Make sure CI passes on the **backports pull request**, including:
* Regular unit tests
* Build tests
* The E4S pipeline at `gitlab.spack.io <https://gitlab.spack.io>`_
If CI does not pass, you'll need to figure out why, and make changes
to the release branch until it does. You can make more commits, modify
or remove cherry-picked commits, or cherry-pick **more** from
``develop`` to make this happen.
#. Merge the ``Backports vX.Y.Z`` PR with the **Rebase and merge** strategy. This
is needed to keep track in the release branch of all the commits that were
cherry-picked.
#. Make sure CI passes on the last commit of the **release branch**.
#. In the rare case you need to include additional commits in the patch release after the backports
PR is merged, it is best to delete the last commit ``Set version to vX.Y.Z`` from the release
branch with a single force push, open a new backports PR named ``Backports vX.Y.Z (2)``, and
repeat the process. Avoid repeated force pushes to the release branch.
#. Follow the steps in :ref:`publishing-releases`.
@@ -1042,25 +1023,31 @@ Updating `releases/latest`
If the new release is the **highest** Spack release yet, you should
also tag it as ``releases/latest``. For example, suppose the highest
release is currently ``0.15.3``:
release is currently ``0.22.3``:
* If you are releasing ``0.15.4`` or ``0.16.0``, then you should tag
it with ``releases/latest``, as these are higher than ``0.15.3``.
* If you are releasing ``0.22.4`` or ``0.23.0``, then you should tag
it with ``releases/latest``, as these are higher than ``0.22.3``.
* If you are making a new release of an **older** major version of
Spack, e.g. ``0.14.4``, then you should not tag it as
Spack, e.g. ``0.21.4``, then you should not tag it as
``releases/latest`` (as there are newer major versions).
To tag ``releases/latest``, do this:
To do so, first fetch the latest tag created on GitHub, since you may not have it locally:
.. code-block:: console
$ git checkout releases/vX.Y # vX.Y is the new release's branch
$ git tag --force releases/latest
$ git push --force --tags
$ git fetch --force git@github.com:spack/spack vX.Y.Z
The ``--force`` argument to ``git tag`` makes ``git`` overwrite the existing
``releases/latest`` tag with the new one.
Then tag ``vX.Y.Z`` as ``releases/latest`` and push the individual tag to GitHub.
.. code-block:: console
$ git tag --force releases/latest vX.Y.Z
$ git push --force git@github.com:spack/spack releases/latest
The ``--force`` argument to ``git tag`` makes ``git`` overwrite the existing ``releases/latest``
tag with the new one. Do **not** use the ``--tags`` flag when pushing, since this will push *all*
local tags.
.. _announcing-releases:

View File

@@ -35,7 +35,7 @@ A build matrix showing which packages are working on which systems is shown belo
.. code-block:: console
apt update
apt install build-essential ca-certificates coreutils curl environment-modules gfortran git gpg lsb-release python3 python3-distutils python3-venv unzip zip
apt install bzip2 ca-certificates file g++ gcc gfortran git gzip lsb-release patch python3 tar unzip xz-utils zstd
.. tab-item:: RHEL
@@ -43,14 +43,14 @@ A build matrix showing which packages are working on which systems is shown belo
dnf install epel-release
dnf group install "Development Tools"
dnf install curl findutils gcc-gfortran gnupg2 hostname iproute redhat-lsb-core python3 python3-pip python3-setuptools unzip python3-boto3
dnf install gcc-gfortran redhat-lsb-core python3 unzip
.. tab-item:: macOS Brew
.. code-block:: console
brew update
brew install curl gcc git gnupg zip
brew install gcc git zip
------------
Installation
@@ -1364,6 +1364,187 @@ This will write the private key to the file `dinosaur.priv`.
or for help on an issue or the Spack slack.
.. _cray-support:
-------------
Spack on Cray
-------------
Spack differs slightly when used on a Cray system. The architecture spec
can differentiate between the front-end and back-end processor and operating system.
For example, on Edison at NERSC, the back-end target processor
is "Ivy Bridge", so you can specify to use the back-end this way:
.. code-block:: console
$ spack install zlib target=ivybridge
You can also use the operating system to build against the back-end:
.. code-block:: console
$ spack install zlib os=CNL10
Notice that the name includes both the operating system name and the major
version number concatenated together.
Alternatively, if you want to build something for the front-end,
you can specify the front-end target processor. The processor for a login node
on Edison is "Sandy bridge" so we specify on the command line like so:
.. code-block:: console
$ spack install zlib target=sandybridge
And the front-end operating system is:
.. code-block:: console
$ spack install zlib os=SuSE11
^^^^^^^^^^^^^^^^^^^^^^^
Cray compiler detection
^^^^^^^^^^^^^^^^^^^^^^^
Spack can detect compilers using two methods. For the front-end, we treat
everything the same. The difference lies in back-end compiler detection.
Back-end compiler detection is made via the Tcl module avail command.
Once it detects the compiler it writes the appropriate PrgEnv and compiler
module name to compilers.yaml and sets the paths to each compiler with Cray\'s
compiler wrapper names (i.e. cc, CC, ftn). During build time, Spack will load
the correct PrgEnv and compiler module and will call appropriate wrapper.
The compilers.yaml config file will also differ. There is a
modules section that is filled with the compiler's Programming Environment
and module name. On other systems, this field is empty []:
.. code-block:: yaml
- compiler:
modules:
- PrgEnv-intel
- intel/15.0.109
As mentioned earlier, the compiler paths will look different on a Cray system.
Since most compilers are invoked using cc, CC and ftn, the paths for each
compiler are replaced with their respective Cray compiler wrapper names:
.. code-block:: yaml
paths:
cc: cc
cxx: CC
f77: ftn
fc: ftn
As opposed to an explicit path to the compiler executable. This allows Spack
to call the Cray compiler wrappers during build time.
For more on compiler configuration, check out :ref:`compiler-config`.
Spack sets the default Cray link type to dynamic, to better match other
other platforms. Individual packages can enable static linking (which is the
default outside of Spack on cray systems) using the ``-static`` flag.
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
Setting defaults and using Cray modules
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
If you want to use default compilers for each PrgEnv and also be able
to load cray external modules, you will need to set up a ``packages.yaml``.
Here's an example of an external configuration for cray modules:
.. code-block:: yaml
packages:
mpich:
externals:
- spec: "mpich@7.3.1%gcc@5.2.0 arch=cray_xc-haswell-CNL10"
modules:
- cray-mpich
- spec: "mpich@7.3.1%intel@16.0.0.109 arch=cray_xc-haswell-CNL10"
modules:
- cray-mpich
all:
providers:
mpi: [mpich]
This tells Spack that for whatever package that depends on mpi, load the
cray-mpich module into the environment. You can then be able to use whatever
environment variables, libraries, etc, that are brought into the environment
via module load.
.. note::
For Cray-provided packages, it is best to use ``modules:`` instead of ``prefix:``
in ``packages.yaml``, because the Cray Programming Environment heavily relies on
modules (e.g., loading the ``cray-mpich`` module adds MPI libraries to the
compiler wrapper link line).
You can set the default compiler that Spack can use for each compiler type.
If you want to use the Cray defaults, then set them under ``all:`` in packages.yaml.
In the compiler field, set the compiler specs in your order of preference.
Whenever you build with that compiler type, Spack will concretize to that version.
Here is an example of a full packages.yaml used at NERSC
.. code-block:: yaml
packages:
mpich:
externals:
- spec: "mpich@7.3.1%gcc@5.2.0 arch=cray_xc-CNL10-ivybridge"
modules:
- cray-mpich
- spec: "mpich@7.3.1%intel@16.0.0.109 arch=cray_xc-SuSE11-ivybridge"
modules:
- cray-mpich
buildable: False
netcdf:
externals:
- spec: "netcdf@4.3.3.1%gcc@5.2.0 arch=cray_xc-CNL10-ivybridge"
modules:
- cray-netcdf
- spec: "netcdf@4.3.3.1%intel@16.0.0.109 arch=cray_xc-CNL10-ivybridge"
modules:
- cray-netcdf
buildable: False
hdf5:
externals:
- spec: "hdf5@1.8.14%gcc@5.2.0 arch=cray_xc-CNL10-ivybridge"
modules:
- cray-hdf5
- spec: "hdf5@1.8.14%intel@16.0.0.109 arch=cray_xc-CNL10-ivybridge"
modules:
- cray-hdf5
buildable: False
all:
compiler: [gcc@5.2.0, intel@16.0.0.109]
providers:
mpi: [mpich]
Here we tell spack that whenever we want to build with gcc use version 5.2.0 or
if we want to build with intel compilers, use version 16.0.0.109. We add a spec
for each compiler type for each cray modules. This ensures that for each
compiler on our system we can use that external module.
For more on external packages check out the section :ref:`sec-external-packages`.
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
Using Linux containers on Cray machines
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
Spack uses environment variables particular to the Cray programming
environment to determine which systems are Cray platforms. These
environment variables may be propagated into containers that are not
using the Cray programming environment.
To ensure that Spack does not autodetect the Cray programming
environment, unset the environment variable ``MODULEPATH``. This
will cause Spack to treat a linux container on a Cray system as a base
linux distro.
.. _windows_support:
----------------

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@@ -12,10 +12,6 @@
Spack
===================
.. epigraph::
`These are docs for the Spack package manager. For sphere packing, see` `pyspack <https://pyspack.readthedocs.io>`_.
Spack is a package management tool designed to support multiple
versions and configurations of software on a wide variety of platforms
and environments. It was designed for large supercomputing centers,

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@@ -476,3 +476,9 @@ implemented using Python's built-in `sys.path
:py:mod:`spack.repo` module implements a custom `Python importer
<https://docs.python.org/2/library/imp.html>`_.
.. warning::
The mechanism for extending packages is not yet extensively tested,
and extending packages across repositories imposes inter-repo
dependencies, which may be hard to manage. Use this feature at your
own risk, but let us know if you have a use case for it.

View File

@@ -1,13 +1,13 @@
sphinx==7.2.6
sphinxcontrib-programoutput==0.17
sphinx_design==0.6.0
sphinx_design==0.5.0
sphinx-rtd-theme==2.0.0
python-levenshtein==0.25.1
docutils==0.20.1
pygments==2.18.0
urllib3==2.2.2
pytest==8.2.2
pygments==2.17.2
urllib3==2.2.1
pytest==8.2.0
isort==5.13.2
black==24.4.2
flake8==7.1.0
flake8==7.0.0
mypy==1.10.0

View File

@@ -18,7 +18,7 @@
* Homepage: https://pypi.python.org/pypi/archspec
* Usage: Labeling, comparison and detection of microarchitectures
* Version: 0.2.4 (commit 48b92512b9ce203ded0ebd1ac41b42593e931f7c)
* Version: 0.2.5 (commit 38ce485258ffc4fc6dd6688f8dc90cb269478c47)
astunparse
----------------

View File

@@ -47,7 +47,11 @@ def decorator(factory):
def partial_uarch(
name: str = "", vendor: str = "", features: Optional[Set[str]] = None, generation: int = 0
name: str = "",
vendor: str = "",
features: Optional[Set[str]] = None,
generation: int = 0,
cpu_part: str = "",
) -> Microarchitecture:
"""Construct a partial microarchitecture, from information gathered during system scan."""
return Microarchitecture(
@@ -57,6 +61,7 @@ def partial_uarch(
features=features or set(),
compilers={},
generation=generation,
cpu_part=cpu_part,
)
@@ -90,6 +95,7 @@ def proc_cpuinfo() -> Microarchitecture:
return partial_uarch(
vendor=_canonicalize_aarch64_vendor(data),
features=_feature_set(data, key="Features"),
cpu_part=data.get("CPU part", ""),
)
if architecture in (PPC64LE, PPC64):
@@ -345,6 +351,10 @@ def sorting_fn(item):
generic_candidates = [c for c in candidates if c.vendor == "generic"]
best_generic = max(generic_candidates, key=sorting_fn)
# Relevant for AArch64. Filter on "cpu_part" if we have any match
if info.cpu_part != "" and any(c for c in candidates if info.cpu_part == c.cpu_part):
candidates = [c for c in candidates if info.cpu_part == c.cpu_part]
# Filter the candidates to be descendant of the best generic candidate.
# This is to avoid that the lack of a niche feature that can be disabled
# from e.g. BIOS prevents detection of a reasonably performant architecture

View File

@@ -2,9 +2,7 @@
# Archspec Project Developers. See the top-level COPYRIGHT file for details.
#
# SPDX-License-Identifier: (Apache-2.0 OR MIT)
"""Types and functions to manage information
on CPU microarchitectures.
"""
"""Types and functions to manage information on CPU microarchitectures."""
import functools
import platform
import re
@@ -65,23 +63,31 @@ class Microarchitecture:
passed in as argument above.
* versions: versions that support this micro-architecture.
generation (int): generation of the micro-architecture, if
relevant.
generation (int): generation of the micro-architecture, if relevant.
cpu_part (str): cpu part of the architecture, if relevant.
"""
# pylint: disable=too-many-arguments
# pylint: disable=too-many-arguments,too-many-instance-attributes
#: Aliases for micro-architecture's features
feature_aliases = FEATURE_ALIASES
def __init__(self, name, parents, vendor, features, compilers, generation=0):
def __init__(self, name, parents, vendor, features, compilers, generation=0, cpu_part=""):
self.name = name
self.parents = parents
self.vendor = vendor
self.features = features
self.compilers = compilers
# Only relevant for PowerPC
self.generation = generation
# Cache the ancestor computation
# Only relevant for AArch64
self.cpu_part = cpu_part
# Cache the "ancestor" computation
self._ancestors = None
# Cache the "generic" computation
self._generic = None
# Cache the "family" computation
self._family = None
@property
def ancestors(self):
@@ -111,8 +117,12 @@ def __eq__(self, other):
and self.parents == other.parents # avoid ancestors here
and self.compilers == other.compilers
and self.generation == other.generation
and self.cpu_part == other.cpu_part
)
def __hash__(self):
return hash(self.name)
@coerce_target_names
def __ne__(self, other):
return not self == other
@@ -143,7 +153,8 @@ def __repr__(self):
cls_name = self.__class__.__name__
fmt = (
cls_name + "({0.name!r}, {0.parents!r}, {0.vendor!r}, "
"{0.features!r}, {0.compilers!r}, {0.generation!r})"
"{0.features!r}, {0.compilers!r}, generation={0.generation!r}, "
"cpu_part={0.cpu_part!r})"
)
return fmt.format(self)
@@ -168,18 +179,22 @@ def __contains__(self, feature):
@property
def family(self):
"""Returns the architecture family a given target belongs to"""
roots = [x for x in [self] + self.ancestors if not x.ancestors]
msg = "a target is expected to belong to just one architecture family"
msg += f"[found {', '.join(str(x) for x in roots)}]"
assert len(roots) == 1, msg
if self._family is None:
roots = [x for x in [self] + self.ancestors if not x.ancestors]
msg = "a target is expected to belong to just one architecture family"
msg += f"[found {', '.join(str(x) for x in roots)}]"
assert len(roots) == 1, msg
self._family = roots.pop()
return roots.pop()
return self._family
@property
def generic(self):
"""Returns the best generic architecture that is compatible with self"""
generics = [x for x in [self] + self.ancestors if x.vendor == "generic"]
return max(generics, key=lambda x: len(x.ancestors))
if self._generic is None:
generics = [x for x in [self] + self.ancestors if x.vendor == "generic"]
self._generic = max(generics, key=lambda x: len(x.ancestors))
return self._generic
def to_dict(self):
"""Returns a dictionary representation of this object."""
@@ -190,6 +205,7 @@ def to_dict(self):
"generation": self.generation,
"parents": [str(x) for x in self.parents],
"compilers": self.compilers,
"cpupart": self.cpu_part,
}
@staticmethod
@@ -202,6 +218,7 @@ def from_dict(data) -> "Microarchitecture":
features=set(data["features"]),
compilers=data.get("compilers", {}),
generation=data.get("generation", 0),
cpu_part=data.get("cpupart", ""),
)
def optimization_flags(self, compiler, version):
@@ -360,8 +377,11 @@ def fill_target_from_dict(name, data, targets):
features = set(values["features"])
compilers = values.get("compilers", {})
generation = values.get("generation", 0)
cpu_part = values.get("cpupart", "")
targets[name] = Microarchitecture(name, parents, vendor, features, compilers, generation)
targets[name] = Microarchitecture(
name, parents, vendor, features, compilers, generation=generation, cpu_part=cpu_part
)
known_targets = {}
data = archspec.cpu.schema.TARGETS_JSON["microarchitectures"]

View File

@@ -1482,7 +1482,6 @@
"cldemote",
"movdir64b",
"movdiri",
"pdcm",
"serialize",
"waitpkg"
],
@@ -2225,14 +2224,96 @@
],
"nvhpc": [
{
"versions": "21.11:",
"versions": "21.11:23.8",
"name": "zen3",
"flags": "-tp {name}",
"warnings": "zen4 is not fully supported by nvhpc yet, falling back to zen3"
"warnings": "zen4 is not fully supported by nvhpc versions < 23.9, falling back to zen3"
},
{
"versions": "23.9:",
"flags": "-tp {name}"
}
]
}
},
"zen5": {
"from": ["zen4"],
"vendor": "AuthenticAMD",
"features": [
"abm",
"aes",
"avx",
"avx2",
"avx512_bf16",
"avx512_bitalg",
"avx512bw",
"avx512cd",
"avx512dq",
"avx512f",
"avx512ifma",
"avx512vbmi",
"avx512_vbmi2",
"avx512vl",
"avx512_vnni",
"avx512_vp2intersect",
"avx512_vpopcntdq",
"avx_vnni",
"bmi1",
"bmi2",
"clflushopt",
"clwb",
"clzero",
"cppc",
"cx16",
"f16c",
"flush_l1d",
"fma",
"fsgsbase",
"gfni",
"ibrs_enhanced",
"mmx",
"movbe",
"movdir64b",
"movdiri",
"pclmulqdq",
"popcnt",
"rdseed",
"sse",
"sse2",
"sse4_1",
"sse4_2",
"sse4a",
"ssse3",
"tsc_adjust",
"vaes",
"vpclmulqdq",
"xsavec",
"xsaveopt"
],
"compilers": {
"gcc": [
{
"versions": "14.1:",
"name": "znver5",
"flags": "-march={name} -mtune={name}"
}
],
"aocc": [
{
"versions": "5.0:",
"name": "znver5",
"flags": "-march={name} -mtune={name}"
}
],
"clang": [
{
"versions": "19.1:",
"name": "znver5",
"flags": "-march={name} -mtune={name}"
}
]
}
},
"ppc64": {
"from": [],
"vendor": "generic",
@@ -2711,7 +2792,8 @@
"flags": "-mcpu=thunderx2t99"
}
]
}
},
"cpupart": "0x0af"
},
"a64fx": {
"from": ["armv8.2a"],
@@ -2779,7 +2861,8 @@
"flags": "-march=armv8.2-a+crc+crypto+fp16+sve"
}
]
}
},
"cpupart": "0x001"
},
"cortex_a72": {
"from": ["aarch64"],
@@ -2816,7 +2899,8 @@
"flags" : "-mcpu=cortex-a72"
}
]
}
},
"cpupart": "0xd08"
},
"neoverse_n1": {
"from": ["cortex_a72", "armv8.2a"],
@@ -2837,8 +2921,7 @@
"asimdrdm",
"lrcpc",
"dcpop",
"asimddp",
"ssbs"
"asimddp"
],
"compilers" : {
"gcc": [
@@ -2902,7 +2985,8 @@
"flags": "-tp {name}"
}
]
}
},
"cpupart": "0xd0c"
},
"neoverse_v1": {
"from": ["neoverse_n1", "armv8.4a"],
@@ -2926,8 +3010,6 @@
"lrcpc",
"dcpop",
"sha3",
"sm3",
"sm4",
"asimddp",
"sha512",
"sve",
@@ -2936,7 +3018,6 @@
"uscat",
"ilrcpc",
"flagm",
"ssbs",
"dcpodp",
"svei8mm",
"svebf16",
@@ -3004,7 +3085,7 @@
},
{
"versions": "11:",
"flags" : "-march=armv8.4-a+sve+ssbs+fp16+bf16+crypto+i8mm+rng"
"flags" : "-march=armv8.4-a+sve+fp16+bf16+crypto+i8mm+rng"
},
{
"versions": "12:",
@@ -3028,7 +3109,8 @@
"flags": "-tp {name}"
}
]
}
},
"cpupart": "0xd40"
},
"neoverse_v2": {
"from": ["neoverse_n1", "armv9.0a"],
@@ -3052,32 +3134,22 @@
"lrcpc",
"dcpop",
"sha3",
"sm3",
"sm4",
"asimddp",
"sha512",
"sve",
"asimdfhm",
"dit",
"uscat",
"ilrcpc",
"flagm",
"ssbs",
"sb",
"dcpodp",
"sve2",
"sveaes",
"svepmull",
"svebitperm",
"svesha3",
"svesm4",
"flagm2",
"frint",
"svei8mm",
"svebf16",
"i8mm",
"bf16",
"dgh"
"bf16"
],
"compilers" : {
"gcc": [
@@ -3102,15 +3174,19 @@
"flags" : "-march=armv8.5-a+sve -mtune=cortex-a76"
},
{
"versions": "10.0:11.99",
"versions": "10.0:11.3.99",
"flags" : "-march=armv8.5-a+sve+sve2+i8mm+bf16 -mtune=cortex-a77"
},
{
"versions": "11.4:11.99",
"flags" : "-mcpu=neoverse-v2"
},
{
"versions": "12.0:12.99",
"versions": "12.0:12.2.99",
"flags" : "-march=armv9-a+i8mm+bf16 -mtune=cortex-a710"
},
{
"versions": "13.0:",
"versions": "12.3:",
"flags" : "-mcpu=neoverse-v2"
}
],
@@ -3145,7 +3221,112 @@
"flags": "-tp {name}"
}
]
}
},
"cpupart": "0xd4f"
},
"neoverse_n2": {
"from": ["neoverse_n1", "armv9.0a"],
"vendor": "ARM",
"features": [
"fp",
"asimd",
"evtstrm",
"aes",
"pmull",
"sha1",
"sha2",
"crc32",
"atomics",
"fphp",
"asimdhp",
"cpuid",
"asimdrdm",
"jscvt",
"fcma",
"lrcpc",
"dcpop",
"sha3",
"asimddp",
"sha512",
"sve",
"asimdfhm",
"uscat",
"ilrcpc",
"flagm",
"sb",
"dcpodp",
"sve2",
"flagm2",
"frint",
"svei8mm",
"svebf16",
"i8mm",
"bf16"
],
"compilers" : {
"gcc": [
{
"versions": "4.8:5.99",
"flags": "-march=armv8-a"
},
{
"versions": "6:6.99",
"flags" : "-march=armv8.1-a"
},
{
"versions": "7.0:7.99",
"flags" : "-march=armv8.2-a -mtune=cortex-a72"
},
{
"versions": "8.0:8.99",
"flags" : "-march=armv8.4-a+sve -mtune=cortex-a72"
},
{
"versions": "9.0:9.99",
"flags" : "-march=armv8.5-a+sve -mtune=cortex-a76"
},
{
"versions": "10.0:10.99",
"flags" : "-march=armv8.5-a+sve+sve2+i8mm+bf16 -mtune=cortex-a77"
},
{
"versions": "11.0:",
"flags" : "-mcpu=neoverse-n2"
}
],
"clang" : [
{
"versions": "9.0:10.99",
"flags" : "-march=armv8.5-a+sve"
},
{
"versions": "11.0:13.99",
"flags" : "-march=armv8.5-a+sve+sve2+i8mm+bf16"
},
{
"versions": "14.0:15.99",
"flags" : "-march=armv9-a+i8mm+bf16"
},
{
"versions": "16.0:",
"flags" : "-mcpu=neoverse-n2"
}
],
"arm" : [
{
"versions": "23.04.0:",
"flags" : "-mcpu=neoverse-n2"
}
],
"nvhpc" : [
{
"versions": "23.3:",
"name": "neoverse-n1",
"flags": "-tp {name}"
}
]
},
"cpupart": "0xd49"
},
"m1": {
"from": ["armv8.4a"],
@@ -3211,7 +3392,8 @@
"flags" : "-mcpu=apple-m1"
}
]
}
},
"cpupart": "0x022"
},
"m2": {
"from": ["m1", "armv8.5a"],
@@ -3289,7 +3471,8 @@
"flags" : "-mcpu=apple-m2"
}
]
}
},
"cpupart": "0x032"
},
"arm": {
"from": [],

View File

@@ -52,6 +52,9 @@
}
}
}
},
"cpupart": {
"type": "string"
}
},
"required": [
@@ -107,4 +110,4 @@
"additionalProperties": false
}
}
}
}

View File

@@ -766,6 +766,7 @@ def copy_tree(
src: str,
dest: str,
symlinks: bool = True,
allow_broken_symlinks: bool = sys.platform != "win32",
ignore: Optional[Callable[[str], bool]] = None,
_permissions: bool = False,
):
@@ -788,6 +789,8 @@ def copy_tree(
src (str): the directory to copy
dest (str): the destination directory
symlinks (bool): whether or not to preserve symlinks
allow_broken_symlinks (bool): whether or not to allow broken (dangling) symlinks,
On Windows, setting this to True will raise an exception. Defaults to true on unix.
ignore (typing.Callable): function indicating which files to ignore
_permissions (bool): for internal use only
@@ -795,6 +798,8 @@ def copy_tree(
IOError: if *src* does not match any files or directories
ValueError: if *src* is a parent directory of *dest*
"""
if allow_broken_symlinks and sys.platform == "win32":
raise llnl.util.symlink.SymlinkError("Cannot allow broken symlinks on Windows!")
if _permissions:
tty.debug("Installing {0} to {1}".format(src, dest))
else:
@@ -867,14 +872,16 @@ def escaped_path(path):
copy_mode(s, d)
for target, d, s in links:
symlink(target, d)
symlink(target, d, allow_broken_symlinks=allow_broken_symlinks)
if _permissions:
set_install_permissions(d)
copy_mode(s, d)
@system_path_filter
def install_tree(src, dest, symlinks=True, ignore=None):
def install_tree(
src, dest, symlinks=True, ignore=None, allow_broken_symlinks=sys.platform != "win32"
):
"""Recursively install an entire directory tree rooted at *src*.
Same as :py:func:`copy_tree` with the addition of setting proper
@@ -885,12 +892,21 @@ def install_tree(src, dest, symlinks=True, ignore=None):
dest (str): the destination directory
symlinks (bool): whether or not to preserve symlinks
ignore (typing.Callable): function indicating which files to ignore
allow_broken_symlinks (bool): whether or not to allow broken (dangling) symlinks,
On Windows, setting this to True will raise an exception.
Raises:
IOError: if *src* does not match any files or directories
ValueError: if *src* is a parent directory of *dest*
"""
copy_tree(src, dest, symlinks=symlinks, ignore=ignore, _permissions=True)
copy_tree(
src,
dest,
symlinks=symlinks,
allow_broken_symlinks=allow_broken_symlinks,
ignore=ignore,
_permissions=True,
)
@system_path_filter

View File

@@ -8,7 +8,6 @@
import subprocess
import sys
import tempfile
from typing import Union
from llnl.util import lang, tty
@@ -17,66 +16,92 @@
if sys.platform == "win32":
from win32file import CreateHardLink
is_windows = sys.platform == "win32"
def _windows_symlink(
src: str, dst: str, target_is_directory: bool = False, *, dir_fd: Union[int, None] = None
):
"""On Windows with System Administrator privileges this will be a normal symbolic link via
os.symlink. On Windows without privledges the link will be a junction for a directory and a
hardlink for a file. On Windows the various link types are:
Symbolic Link: A link to a file or directory on the same or different volume (drive letter) or
even to a remote file or directory (using UNC in its path). Need System Administrator
privileges to make these.
def symlink(source_path: str, link_path: str, allow_broken_symlinks: bool = not is_windows):
"""
Create a link.
Hard Link: A link to a file on the same volume (drive letter) only. Every file (file's data)
has at least 1 hard link (file's name). But when this method creates a new hard link there will
be 2. Deleting all hard links effectively deletes the file. Don't need System Administrator
privileges.
On non-Windows and Windows with System Administrator
privleges this will be a normal symbolic link via
os.symlink.
Junction: A link to a directory on the same or different volume (drive letter) but not to a
remote directory. Don't need System Administrator privileges."""
source_path = os.path.normpath(src)
On Windows without privledges the link will be a
junction for a directory and a hardlink for a file.
On Windows the various link types are:
Symbolic Link: A link to a file or directory on the
same or different volume (drive letter) or even to
a remote file or directory (using UNC in its path).
Need System Administrator privileges to make these.
Hard Link: A link to a file on the same volume (drive
letter) only. Every file (file's data) has at least 1
hard link (file's name). But when this method creates
a new hard link there will be 2. Deleting all hard
links effectively deletes the file. Don't need System
Administrator privileges.
Junction: A link to a directory on the same or different
volume (drive letter) but not to a remote directory. Don't
need System Administrator privileges.
Parameters:
source_path (str): The real file or directory that the link points to.
Must be absolute OR relative to the link.
link_path (str): The path where the link will exist.
allow_broken_symlinks (bool): On Linux or Mac, don't raise an exception if the source_path
doesn't exist. This will still raise an exception on Windows.
"""
source_path = os.path.normpath(source_path)
win_source_path = source_path
link_path = os.path.normpath(dst)
link_path = os.path.normpath(link_path)
# Perform basic checks to make sure symlinking will succeed
if os.path.lexists(link_path):
raise AlreadyExistsError(f"Link path ({link_path}) already exists. Cannot create link.")
# Never allow broken links on Windows.
if sys.platform == "win32" and allow_broken_symlinks:
raise ValueError("allow_broken_symlinks parameter cannot be True on Windows.")
if not os.path.exists(source_path):
if os.path.isabs(source_path):
# An absolute source path that does not exist will result in a broken link.
raise SymlinkError(
f"Source path ({source_path}) is absolute but does not exist. Resulting "
f"link would be broken so not making link."
if not allow_broken_symlinks:
# Perform basic checks to make sure symlinking will succeed
if os.path.lexists(link_path):
raise AlreadyExistsError(
f"Link path ({link_path}) already exists. Cannot create link."
)
else:
# os.symlink can create a link when the given source path is relative to
# the link path. Emulate this behavior and check to see if the source exists
# relative to the link path ahead of link creation to prevent broken
# links from being made.
link_parent_dir = os.path.dirname(link_path)
relative_path = os.path.join(link_parent_dir, source_path)
if os.path.exists(relative_path):
# In order to work on windows, the source path needs to be modified to be
# relative because hardlink/junction dont resolve relative paths the same
# way as os.symlink. This is ignored on other operating systems.
win_source_path = relative_path
else:
if not os.path.exists(source_path):
if os.path.isabs(source_path) and not allow_broken_symlinks:
# An absolute source path that does not exist will result in a broken link.
raise SymlinkError(
f"The source path ({source_path}) is not relative to the link path "
f"({link_path}). Resulting link would be broken so not making link."
f"Source path ({source_path}) is absolute but does not exist. Resulting "
f"link would be broken so not making link."
)
else:
# os.symlink can create a link when the given source path is relative to
# the link path. Emulate this behavior and check to see if the source exists
# relative to the link path ahead of link creation to prevent broken
# links from being made.
link_parent_dir = os.path.dirname(link_path)
relative_path = os.path.join(link_parent_dir, source_path)
if os.path.exists(relative_path):
# In order to work on windows, the source path needs to be modified to be
# relative because hardlink/junction dont resolve relative paths the same
# way as os.symlink. This is ignored on other operating systems.
win_source_path = relative_path
elif not allow_broken_symlinks:
raise SymlinkError(
f"The source path ({source_path}) is not relative to the link path "
f"({link_path}). Resulting link would be broken so not making link."
)
# Create the symlink
if not _windows_can_symlink():
if sys.platform == "win32" and not _windows_can_symlink():
_windows_create_link(win_source_path, link_path)
else:
os.symlink(source_path, link_path, target_is_directory=os.path.isdir(source_path))
def _windows_islink(path: str) -> bool:
def islink(path: str) -> bool:
"""Override os.islink to give correct answer for spack logic.
For Non-Windows: a link can be determined with the os.path.islink method.
@@ -244,7 +269,7 @@ def _windows_create_hard_link(path: str, link: str):
CreateHardLink(link, path)
def _windows_readlink(path: str, *, dir_fd=None):
def readlink(path: str, *, dir_fd=None):
"""Spack utility to override of os.readlink method to work cross platform"""
if _windows_is_hardlink(path):
return _windows_read_hard_link(path)
@@ -313,16 +338,6 @@ def resolve_link_target_relative_to_the_link(link):
return os.path.join(link_dir, target)
if sys.platform == "win32":
symlink = _windows_symlink
readlink = _windows_readlink
islink = _windows_islink
else:
symlink = os.symlink
readlink = os.readlink
islink = os.path.islink
class SymlinkError(RuntimeError):
"""Exception class for errors raised while creating symlinks,
junctions and hard links

View File

@@ -18,9 +18,10 @@
import threading
import traceback
from contextlib import contextmanager
from multiprocessing.connection import Connection
from threading import Thread
from types import ModuleType
from typing import Optional
from typing import Callable, Optional
import llnl.util.tty as tty
@@ -329,49 +330,6 @@ def close(self):
self.file.close()
class MultiProcessFd:
"""Return an object which stores a file descriptor and can be passed as an
argument to a function run with ``multiprocessing.Process``, such that
the file descriptor is available in the subprocess."""
def __init__(self, fd):
self._connection = None
self._fd = None
if sys.version_info >= (3, 8):
self._connection = multiprocessing.connection.Connection(fd)
else:
self._fd = fd
@property
def fd(self):
if self._connection:
return self._connection._handle
else:
return self._fd
def close(self):
if self._connection:
self._connection.close()
else:
os.close(self._fd)
def close_connection_and_file(multiprocess_fd, file):
# MultiprocessFd is intended to transmit a FD
# to a child process, this FD is then opened to a Python File object
# (using fdopen). In >= 3.8, MultiprocessFd encapsulates a
# multiprocessing.connection.Connection; Connection closes the FD
# when it is deleted, and prints a warning about duplicate closure if
# it is not explicitly closed. In < 3.8, MultiprocessFd encapsulates a
# simple FD; closing the FD here appears to conflict with
# closure of the File object (in < 3.8 that is). Therefore this needs
# to choose whether to close the File or the Connection.
if sys.version_info >= (3, 8):
multiprocess_fd.close()
else:
file.close()
@contextmanager
def replace_environment(env):
"""Replace the current environment (`os.environ`) with `env`.
@@ -529,22 +487,20 @@ def __enter__(self):
# forcing debug output.
self._saved_debug = tty._debug
# OS-level pipe for redirecting output to logger
read_fd, write_fd = os.pipe()
# Pipe for redirecting output to logger
read_fd, self.write_fd = multiprocessing.Pipe(duplex=False)
read_multiprocess_fd = MultiProcessFd(read_fd)
# Multiprocessing pipe for communication back from the daemon
# Pipe for communication back from the daemon
# Currently only used to save echo value between uses
self.parent_pipe, child_pipe = multiprocessing.Pipe()
self.parent_pipe, child_pipe = multiprocessing.Pipe(duplex=False)
# Sets a daemon that writes to file what it reads from a pipe
try:
# need to pass this b/c multiprocessing closes stdin in child.
input_multiprocess_fd = None
input_fd = None
try:
if sys.stdin.isatty():
input_multiprocess_fd = MultiProcessFd(os.dup(sys.stdin.fileno()))
input_fd = Connection(os.dup(sys.stdin.fileno()))
except BaseException:
# just don't forward input if this fails
pass
@@ -553,9 +509,9 @@ def __enter__(self):
self.process = multiprocessing.Process(
target=_writer_daemon,
args=(
input_multiprocess_fd,
read_multiprocess_fd,
write_fd,
input_fd,
read_fd,
self.write_fd,
self.echo,
self.log_file,
child_pipe,
@@ -566,9 +522,9 @@ def __enter__(self):
self.process.start()
finally:
if input_multiprocess_fd:
input_multiprocess_fd.close()
read_multiprocess_fd.close()
if input_fd:
input_fd.close()
read_fd.close()
# Flush immediately before redirecting so that anything buffered
# goes to the original stream
@@ -586,9 +542,9 @@ def __enter__(self):
self._saved_stderr = os.dup(sys.stderr.fileno())
# redirect to the pipe we created above
os.dup2(write_fd, sys.stdout.fileno())
os.dup2(write_fd, sys.stderr.fileno())
os.close(write_fd)
os.dup2(self.write_fd.fileno(), sys.stdout.fileno())
os.dup2(self.write_fd.fileno(), sys.stderr.fileno())
self.write_fd.close()
else:
# Handle I/O the Python way. This won't redirect lower-level
@@ -601,7 +557,7 @@ def __enter__(self):
self._saved_stderr = sys.stderr
# create a file object for the pipe; redirect to it.
pipe_fd_out = os.fdopen(write_fd, "w")
pipe_fd_out = os.fdopen(self.write_fd.fileno(), "w", closefd=False)
sys.stdout = pipe_fd_out
sys.stderr = pipe_fd_out
@@ -637,6 +593,7 @@ def __exit__(self, exc_type, exc_val, exc_tb):
else:
sys.stdout = self._saved_stdout
sys.stderr = self._saved_stderr
self.write_fd.close()
# print log contents in parent if needed.
if self.log_file.write_in_parent:
@@ -850,14 +807,14 @@ def force_echo(self):
def _writer_daemon(
stdin_multiprocess_fd,
read_multiprocess_fd,
write_fd,
echo,
log_file_wrapper,
control_pipe,
filter_fn,
):
stdin_fd: Optional[Connection],
read_fd: Connection,
write_fd: Connection,
echo: bool,
log_file_wrapper: FileWrapper,
control_fd: Connection,
filter_fn: Optional[Callable[[str], str]],
) -> None:
"""Daemon used by ``log_output`` to write to a log file and to ``stdout``.
The daemon receives output from the parent process and writes it both
@@ -894,43 +851,37 @@ def _writer_daemon(
``StringIO`` in the parent. This is mainly for testing.
Arguments:
stdin_multiprocess_fd (int): input from the terminal
read_multiprocess_fd (int): pipe for reading from parent's redirected
stdout
echo (bool): initial echo setting -- controlled by user and
preserved across multiple writer daemons
log_file_wrapper (FileWrapper): file to log all output
control_pipe (Pipe): multiprocessing pipe on which to send control
information to the parent
filter_fn (callable, optional): function to filter each line of output
stdin_fd: optional input from the terminal
read_fd: pipe for reading from parent's redirected stdout
echo: initial echo setting -- controlled by user and preserved across multiple writer
daemons
log_file_wrapper: file to log all output
control_pipe: multiprocessing pipe on which to send control information to the parent
filter_fn: optional function to filter each line of output
"""
# If this process was forked, then it will inherit file descriptors from
# the parent process. This process depends on closing all instances of
# write_fd to terminate the reading loop, so we close the file descriptor
# here. Forking is the process spawning method everywhere except Mac OS
# for Python >= 3.8 and on Windows
if sys.version_info < (3, 8) or sys.platform != "darwin":
os.close(write_fd)
# This process depends on closing all instances of write_pipe to terminate the reading loop
write_fd.close()
# 1. Use line buffering (3rd param = 1) since Python 3 has a bug
# that prevents unbuffered text I/O.
# 2. Python 3.x before 3.7 does not open with UTF-8 encoding by default
in_pipe = os.fdopen(read_multiprocess_fd.fd, "r", 1, encoding="utf-8")
# 3. closefd=False because Connection has "ownership"
read_file = os.fdopen(read_fd.fileno(), "r", 1, encoding="utf-8", closefd=False)
if stdin_multiprocess_fd:
stdin = os.fdopen(stdin_multiprocess_fd.fd)
if stdin_fd:
stdin_file = os.fdopen(stdin_fd.fileno(), closefd=False)
else:
stdin = None
stdin_file = None
# list of streams to select from
istreams = [in_pipe, stdin] if stdin else [in_pipe]
istreams = [read_file, stdin_file] if stdin_file else [read_file]
force_echo = False # parent can force echo for certain output
log_file = log_file_wrapper.unwrap()
try:
with keyboard_input(stdin) as kb:
with keyboard_input(stdin_file) as kb:
while True:
# fix the terminal settings if we recently came to
# the foreground
@@ -943,12 +894,12 @@ def _writer_daemon(
# Allow user to toggle echo with 'v' key.
# Currently ignores other chars.
# only read stdin if we're in the foreground
if stdin in rlist and not _is_background_tty(stdin):
if stdin_file and stdin_file in rlist and not _is_background_tty(stdin_file):
# it's possible to be backgrounded between the above
# check and the read, so we ignore SIGTTIN here.
with ignore_signal(signal.SIGTTIN):
try:
if stdin.read(1) == "v":
if stdin_file.read(1) == "v":
echo = not echo
except IOError as e:
# If SIGTTIN is ignored, the system gives EIO
@@ -957,13 +908,13 @@ def _writer_daemon(
if e.errno != errno.EIO:
raise
if in_pipe in rlist:
if read_file in rlist:
line_count = 0
try:
while line_count < 100:
# Handle output from the calling process.
try:
line = _retry(in_pipe.readline)()
line = _retry(read_file.readline)()
except UnicodeDecodeError:
# installs like --test=root gpgme produce non-UTF8 logs
line = "<line lost: output was not encoded as UTF-8>\n"
@@ -992,7 +943,7 @@ def _writer_daemon(
if xoff in controls:
force_echo = False
if not _input_available(in_pipe):
if not _input_available(read_file):
break
finally:
if line_count > 0:
@@ -1007,14 +958,14 @@ def _writer_daemon(
finally:
# send written data back to parent if we used a StringIO
if isinstance(log_file, io.StringIO):
control_pipe.send(log_file.getvalue())
control_fd.send(log_file.getvalue())
log_file_wrapper.close()
close_connection_and_file(read_multiprocess_fd, in_pipe)
if stdin_multiprocess_fd:
close_connection_and_file(stdin_multiprocess_fd, stdin)
read_fd.close()
if stdin_fd:
stdin_fd.close()
# send echo value back to the parent so it can be preserved.
control_pipe.send(echo)
control_fd.send(echo)
def _retry(function):

View File

@@ -4,7 +4,7 @@
# SPDX-License-Identifier: (Apache-2.0 OR MIT)
#: PEP440 canonical <major>.<minor>.<micro>.<devN> string
__version__ = "0.23.0.dev0"
__version__ = "0.22.3"
spack_version = __version__

View File

@@ -421,10 +421,6 @@ def _check_patch_urls(pkgs, error_cls):
r"^https?://(?:patch-diff\.)?github(?:usercontent)?\.com/"
r".+/.+/(?:commit|pull)/[a-fA-F0-9]+\.(?:patch|diff)"
)
github_pull_commits_re = (
r"^https?://(?:patch-diff\.)?github(?:usercontent)?\.com/"
r".+/.+/pull/\d+/commits/[a-fA-F0-9]+\.(?:patch|diff)"
)
# Only .diff URLs have stable/full hashes:
# https://forum.gitlab.com/t/patches-with-full-index/29313
gitlab_patch_url_re = (
@@ -440,24 +436,14 @@ def _check_patch_urls(pkgs, error_cls):
if not isinstance(patch, spack.patch.UrlPatch):
continue
if re.match(github_pull_commits_re, patch.url):
url = re.sub(r"/pull/\d+/commits/", r"/commit/", patch.url)
url = re.sub(r"^(.*)(?<!full_index=1)$", r"\1?full_index=1", url)
errors.append(
error_cls(
f"patch URL in package {pkg_cls.name} "
+ "must not be a pull request commit; "
+ f"instead use {url}",
[patch.url],
)
)
elif re.match(github_patch_url_re, patch.url):
if re.match(github_patch_url_re, patch.url):
full_index_arg = "?full_index=1"
if not patch.url.endswith(full_index_arg):
errors.append(
error_cls(
f"patch URL in package {pkg_cls.name} "
+ f"must end with {full_index_arg}",
"patch URL in package {0} must end with {1}".format(
pkg_cls.name, full_index_arg
),
[patch.url],
)
)
@@ -465,7 +451,9 @@ def _check_patch_urls(pkgs, error_cls):
if not patch.url.endswith(".diff"):
errors.append(
error_cls(
f"patch URL in package {pkg_cls.name} must end with .diff",
"patch URL in package {0} must end with .diff".format(
pkg_cls.name
),
[patch.url],
)
)
@@ -791,7 +779,7 @@ def check_virtual_with_variants(spec, msg):
return
error = error_cls(
f"{pkg_name}: {msg}",
f"remove variants from '{spec}' in depends_on directive in {filename}",
[f"remove variants from '{spec}' in depends_on directive in {filename}"],
)
errors.append(error)

View File

@@ -23,7 +23,6 @@
import warnings
from contextlib import closing
from typing import Dict, Iterable, List, NamedTuple, Optional, Set, Tuple
from urllib.error import HTTPError, URLError
import llnl.util.filesystem as fsys
import llnl.util.lang
@@ -899,9 +898,8 @@ def url_read_method(url):
try:
_, _, spec_file = web_util.read_from_url(url)
contents = codecs.getreader("utf-8")(spec_file).read()
except (URLError, web_util.SpackWebError) as url_err:
tty.error("Error reading specfile: {0}".format(url))
tty.error(url_err)
except web_util.SpackWebError as e:
tty.error(f"Error reading specfile: {url}: {e}")
return contents
try:
@@ -2041,21 +2039,17 @@ def try_direct_fetch(spec, mirrors=None):
try:
_, _, fs = web_util.read_from_url(buildcache_fetch_url_signed_json)
specfile_is_signed = True
except (URLError, web_util.SpackWebError, HTTPError) as url_err:
except web_util.SpackWebError as e1:
try:
_, _, fs = web_util.read_from_url(buildcache_fetch_url_json)
except (URLError, web_util.SpackWebError, HTTPError) as url_err_x:
except web_util.SpackWebError as e2:
tty.debug(
"Did not find {0} on {1}".format(
specfile_name, buildcache_fetch_url_signed_json
),
url_err,
f"Did not find {specfile_name} on {buildcache_fetch_url_signed_json}",
e1,
level=2,
)
tty.debug(
"Did not find {0} on {1}".format(specfile_name, buildcache_fetch_url_json),
url_err_x,
level=2,
f"Did not find {specfile_name} on {buildcache_fetch_url_json}", e2, level=2
)
continue
specfile_contents = codecs.getreader("utf-8")(fs).read()
@@ -2140,6 +2134,9 @@ def get_keys(install=False, trust=False, force=False, mirrors=None):
for mirror in mirror_collection.values():
fetch_url = mirror.fetch_url
# TODO: oci:// does not support signing.
if fetch_url.startswith("oci://"):
continue
keys_url = url_util.join(
fetch_url, BUILD_CACHE_RELATIVE_PATH, BUILD_CACHE_KEYS_RELATIVE_PATH
)
@@ -2150,19 +2147,12 @@ def get_keys(install=False, trust=False, force=False, mirrors=None):
try:
_, _, json_file = web_util.read_from_url(keys_index)
json_index = sjson.load(codecs.getreader("utf-8")(json_file))
except (URLError, web_util.SpackWebError) as url_err:
except web_util.SpackWebError as url_err:
if web_util.url_exists(keys_index):
err_msg = [
"Unable to find public keys in {0},",
" caught exception attempting to read from {1}.",
]
tty.error(
"".join(err_msg).format(
url_util.format(fetch_url), url_util.format(keys_index)
)
f"Unable to find public keys in {url_util.format(fetch_url)},"
f" caught exception attempting to read from {url_util.format(keys_index)}."
)
tty.debug(url_err)
continue
@@ -2442,7 +2432,7 @@ def get_remote_hash(self):
url_index_hash = url_util.join(self.url, BUILD_CACHE_RELATIVE_PATH, "index.json.hash")
try:
response = self.urlopen(urllib.request.Request(url_index_hash, headers=self.headers))
except urllib.error.URLError:
except (TimeoutError, urllib.error.URLError):
return None
# Validate the hash
@@ -2464,7 +2454,7 @@ def conditional_fetch(self) -> FetchIndexResult:
try:
response = self.urlopen(urllib.request.Request(url_index, headers=self.headers))
except urllib.error.URLError as e:
except (TimeoutError, urllib.error.URLError) as e:
raise FetchIndexError("Could not fetch index from {}".format(url_index), e) from e
try:
@@ -2505,10 +2495,7 @@ def __init__(self, url, etag, urlopen=web_util.urlopen):
def conditional_fetch(self) -> FetchIndexResult:
# Just do a conditional fetch immediately
url = url_util.join(self.url, BUILD_CACHE_RELATIVE_PATH, "index.json")
headers = {
"User-Agent": web_util.SPACK_USER_AGENT,
"If-None-Match": '"{}"'.format(self.etag),
}
headers = {"User-Agent": web_util.SPACK_USER_AGENT, "If-None-Match": f'"{self.etag}"'}
try:
response = self.urlopen(urllib.request.Request(url, headers=headers))
@@ -2516,14 +2503,14 @@ def conditional_fetch(self) -> FetchIndexResult:
if e.getcode() == 304:
# Not modified; that means fresh.
return FetchIndexResult(etag=None, hash=None, data=None, fresh=True)
raise FetchIndexError("Could not fetch index {}".format(url), e) from e
except urllib.error.URLError as e:
raise FetchIndexError("Could not fetch index {}".format(url), e) from e
raise FetchIndexError(f"Could not fetch index {url}", e) from e
except (TimeoutError, urllib.error.URLError) as e:
raise FetchIndexError(f"Could not fetch index {url}", e) from e
try:
result = codecs.getreader("utf-8")(response).read()
except ValueError as e:
raise FetchIndexError("Remote index {} is invalid".format(url), e) from e
raise FetchIndexError(f"Remote index {url} is invalid", e) from e
headers = response.headers
etag_header_value = headers.get("Etag", None) or headers.get("etag", None)
@@ -2554,21 +2541,19 @@ def conditional_fetch(self) -> FetchIndexResult:
headers={"Accept": "application/vnd.oci.image.manifest.v1+json"},
)
)
except urllib.error.URLError as e:
raise FetchIndexError(
"Could not fetch manifest from {}".format(url_manifest), e
) from e
except (TimeoutError, urllib.error.URLError) as e:
raise FetchIndexError(f"Could not fetch manifest from {url_manifest}", e) from e
try:
manifest = json.loads(response.read())
except Exception as e:
raise FetchIndexError("Remote index {} is invalid".format(url_manifest), e) from e
raise FetchIndexError(f"Remote index {url_manifest} is invalid", e) from e
# Get first blob hash, which should be the index.json
try:
index_digest = spack.oci.image.Digest.from_string(manifest["layers"][0]["digest"])
except Exception as e:
raise FetchIndexError("Remote index {} is invalid".format(url_manifest), e) from e
raise FetchIndexError(f"Remote index {url_manifest} is invalid", e) from e
# Fresh?
if index_digest.digest == self.local_hash:

View File

@@ -213,18 +213,15 @@ def _root_spec(spec_str: str) -> str:
Args:
spec_str: spec to be bootstrapped. Must be without compiler and target.
"""
# Add a compiler and platform requirement to the root spec.
# Add a compiler requirement to the root spec.
platform = str(spack.platforms.host())
if platform == "darwin":
spec_str += " %apple-clang"
elif platform == "windows":
spec_str += " %msvc"
elif platform == "linux":
spec_str += " %gcc"
elif platform == "freebsd":
spec_str += " %clang"
spec_str += f" platform={platform}"
target = archspec.cpu.host().family
spec_str += f" target={target}"

View File

@@ -597,7 +597,10 @@ def bootstrapping_sources(scope: Optional[str] = None):
current = copy.copy(entry)
metadata_dir = spack.util.path.canonicalize_path(entry["metadata"])
metadata_yaml = os.path.join(metadata_dir, METADATA_YAML_FILENAME)
with open(metadata_yaml, encoding="utf-8") as stream:
current.update(spack.util.spack_yaml.load(stream))
list_of_sources.append(current)
try:
with open(metadata_yaml, encoding="utf-8") as stream:
current.update(spack.util.spack_yaml.load(stream))
list_of_sources.append(current)
except OSError:
pass
return list_of_sources

View File

@@ -43,7 +43,8 @@
from collections import defaultdict
from enum import Flag, auto
from itertools import chain
from typing import Dict, List, Set, Tuple
from multiprocessing.connection import Connection
from typing import Callable, Dict, List, Optional, Set, Tuple
import llnl.util.tty as tty
from llnl.string import plural
@@ -51,7 +52,6 @@
from llnl.util.lang import dedupe, stable_partition
from llnl.util.symlink import symlink
from llnl.util.tty.color import cescape, colorize
from llnl.util.tty.log import MultiProcessFd
import spack.build_systems.cmake
import spack.build_systems.meson
@@ -92,7 +92,7 @@
)
from spack.util.executable import Executable
from spack.util.log_parse import make_log_context, parse_log_events
from spack.util.module_cmd import load_module, path_from_modules
from spack.util.module_cmd import load_module, module, path_from_modules
#
# This can be set by the user to globally disable parallel builds.
@@ -191,6 +191,14 @@ def __call__(self, *args, **kwargs):
return super().__call__(*args, **kwargs)
def _on_cray():
host_platform = spack.platforms.host()
host_os = host_platform.operating_system("default_os")
on_cray = str(host_platform) == "cray"
using_cnl = re.match(r"cnl\d+", str(host_os))
return on_cray, using_cnl
def clean_environment():
# Stuff in here sanitizes the build environment to eliminate
# anything the user has set that may interfere. We apply it immediately
@@ -234,6 +242,17 @@ def clean_environment():
if varname.endswith("_ROOT") and varname != "SPACK_ROOT":
env.unset(varname)
# On Cray "cluster" systems, unset CRAY_LD_LIBRARY_PATH to avoid
# interference with Spack dependencies.
# CNL requires these variables to be set (or at least some of them,
# depending on the CNL version).
on_cray, using_cnl = _on_cray()
if on_cray and not using_cnl:
env.unset("CRAY_LD_LIBRARY_PATH")
for varname in os.environ.keys():
if "PKGCONF" in varname:
env.unset(varname)
# Unset the following variables because they can affect installation of
# Autotools and CMake packages.
build_system_vars = [
@@ -363,7 +382,11 @@ def set_compiler_environment_variables(pkg, env):
_add_werror_handling(keep_werror, env)
# Set the target parameters that the compiler will add
isa_arg = spec.architecture.target.optimization_flags(compiler)
# Don't set on cray platform because the targeting module handles this
if spec.satisfies("platform=cray"):
isa_arg = ""
else:
isa_arg = spec.architecture.target.optimization_flags(compiler)
env.set("SPACK_TARGET_ARGS", isa_arg)
# Trap spack-tracked compiler flags as appropriate.
@@ -457,9 +480,12 @@ def set_wrapper_variables(pkg, env):
env.set(SPACK_DEBUG_LOG_ID, pkg.spec.format("{name}-{hash:7}"))
env.set(SPACK_DEBUG_LOG_DIR, spack.main.spack_working_dir)
# Find ccache binary and hand it to build environment
if spack.config.get("config:ccache"):
# Enable ccache in the compiler wrapper
env.set(SPACK_CCACHE_BINARY, spack.util.executable.which_string("ccache", required=True))
else:
# Avoid cache pollution if a build system forces `ccache <compiler wrapper invocation>`.
env.set("CCACHE_DISABLE", "1")
# Gather information about various types of dependencies
link_deps = set(pkg.spec.traverse(root=False, deptype=("link")))
@@ -738,9 +764,7 @@ def get_rpaths(pkg):
# Second module is our compiler mod name. We use that to get rpaths from
# module show output.
if pkg.compiler.modules and len(pkg.compiler.modules) > 1:
mod_rpath = path_from_modules([pkg.compiler.modules[1]])
if mod_rpath:
rpaths.append(mod_rpath)
rpaths.append(path_from_modules([pkg.compiler.modules[1]]))
return list(dedupe(filter_system_paths(rpaths)))
@@ -810,6 +834,14 @@ def setup_package(pkg, dirty, context: Context = Context.BUILD):
for mod in pkg.compiler.modules:
load_module(mod)
# kludge to handle cray mpich and libsci being automatically loaded by
# PrgEnv modules on cray platform. Module unload does no damage when
# unnecessary
on_cray, _ = _on_cray()
if on_cray and not dirty:
for mod in ["cray-mpich", "cray-libsci"]:
module("unload", mod)
if target and target.module_name:
load_module(target.module_name)
@@ -1113,18 +1145,60 @@ def get_cmake_prefix_path(pkg):
def _setup_pkg_and_run(
serialized_pkg, function, kwargs, write_pipe, input_multiprocess_fd, jsfd1, jsfd2
serialized_pkg: "spack.subprocess_context.PackageInstallContext",
function: Callable,
kwargs: Dict,
write_pipe: Connection,
input_pipe: Optional[Connection],
jsfd1: Optional[Connection],
jsfd2: Optional[Connection],
):
"""Main entry point in the child process for Spack builds.
``_setup_pkg_and_run`` is called by the child process created in
``start_build_process()``, and its main job is to run ``function()`` on behalf of
some Spack installation (see :ref:`spack.installer.PackageInstaller._install_task`).
The child process is passed a ``write_pipe``, on which it's expected to send one of
the following:
* ``StopPhase``: error raised by a build process indicating it's stopping at a
particular build phase.
* ``BaseException``: any exception raised by a child build process, which will be
wrapped in ``ChildError`` (which adds a bunch of debug info and log context) and
raised in the parent.
* The return value of ``function()``, which can be anything (except an exception).
This is returned to the caller.
Note: ``jsfd1`` and ``jsfd2`` are passed solely to ensure that the child process
does not close these file descriptors. Some ``multiprocessing`` backends will close
them automatically in the child if they are not passed at process creation time.
Arguments:
serialized_pkg: Spack package install context object (serialized form of the
package that we'll build in the child process).
function: function to call in the child process; serialized_pkg is passed to
this as the first argument.
kwargs: additional keyword arguments to pass to ``function()``.
write_pipe: multiprocessing ``Connection`` to the parent process, to which the
child *must* send a result (or an error) back to parent on.
input_multiprocess_fd: stdin from the parent (not passed currently on Windows)
jsfd1: gmake Jobserver file descriptor 1.
jsfd2: gmake Jobserver file descriptor 2.
"""
context: str = kwargs.get("context", "build")
try:
# We are in the child process. Python sets sys.stdin to
# open(os.devnull) to prevent our process and its parent from
# simultaneously reading from the original stdin. But, we assume
# that the parent process is not going to read from it till we
# are done with the child, so we undo Python's precaution.
if input_multiprocess_fd is not None:
sys.stdin = os.fdopen(input_multiprocess_fd.fd)
# We are in the child process. Python sets sys.stdin to open(os.devnull) to prevent our
# process and its parent from simultaneously reading from the original stdin. But, we
# assume that the parent process is not going to read from it till we are done with the
# child, so we undo Python's precaution. closefd=False since Connection has ownership.
if input_pipe is not None:
sys.stdin = os.fdopen(input_pipe.fileno(), closefd=False)
pkg = serialized_pkg.restore()
@@ -1140,13 +1214,14 @@ def _setup_pkg_and_run(
# Do not create a full ChildError from this, it's not an error
# it's a control statement.
write_pipe.send(e)
except BaseException:
except BaseException as e:
# catch ANYTHING that goes wrong in the child process
exc_type, exc, tb = sys.exc_info()
# Need to unwind the traceback in the child because traceback
# objects can't be sent to the parent.
tb_string = traceback.format_exc()
exc_type = type(e)
tb = e.__traceback__
tb_string = "".join(traceback.format_exception(exc_type, e, tb))
# build up some context from the offending package so we can
# show that, too.
@@ -1163,8 +1238,8 @@ def _setup_pkg_and_run(
elif context == "test":
logfile = os.path.join(pkg.test_suite.stage, pkg.test_suite.test_log_name(pkg.spec))
error_msg = str(exc)
if isinstance(exc, (spack.multimethod.NoSuchMethodError, AttributeError)):
error_msg = str(e)
if isinstance(e, (spack.multimethod.NoSuchMethodError, AttributeError)):
process = "test the installation" if context == "test" else "build from sources"
error_msg = (
"The '{}' package cannot find an attribute while trying to {}. "
@@ -1174,7 +1249,7 @@ def _setup_pkg_and_run(
"More information at https://spack.readthedocs.io/en/latest/packaging_guide.html#installation-procedure"
).format(pkg.name, process, context)
error_msg = colorize("@*R{{{}}}".format(error_msg))
error_msg = "{}\n\n{}".format(str(exc), error_msg)
error_msg = "{}\n\n{}".format(str(e), error_msg)
# make a pickleable exception to send to parent.
msg = "%s: %s" % (exc_type.__name__, error_msg)
@@ -1192,8 +1267,8 @@ def _setup_pkg_and_run(
finally:
write_pipe.close()
if input_multiprocess_fd is not None:
input_multiprocess_fd.close()
if input_pipe is not None:
input_pipe.close()
def start_build_process(pkg, function, kwargs):
@@ -1220,23 +1295,9 @@ def child_fun():
If something goes wrong, the child process catches the error and
passes it to the parent wrapped in a ChildError. The parent is
expected to handle (or re-raise) the ChildError.
This uses `multiprocessing.Process` to create the child process. The
mechanism used to create the process differs on different operating
systems and for different versions of Python. In some cases "fork"
is used (i.e. the "fork" system call) and some cases it starts an
entirely new Python interpreter process (in the docs this is referred
to as the "spawn" start method). Breaking it down by OS:
- Linux always uses fork.
- Mac OS uses fork before Python 3.8 and "spawn" for 3.8 and after.
- Windows always uses the "spawn" start method.
For more information on `multiprocessing` child process creation
mechanisms, see https://docs.python.org/3/library/multiprocessing.html#contexts-and-start-methods
"""
read_pipe, write_pipe = multiprocessing.Pipe(duplex=False)
input_multiprocess_fd = None
input_fd = None
jobserver_fd1 = None
jobserver_fd2 = None
@@ -1245,14 +1306,13 @@ def child_fun():
try:
# Forward sys.stdin when appropriate, to allow toggling verbosity
if sys.platform != "win32" and sys.stdin.isatty() and hasattr(sys.stdin, "fileno"):
input_fd = os.dup(sys.stdin.fileno())
input_multiprocess_fd = MultiProcessFd(input_fd)
input_fd = Connection(os.dup(sys.stdin.fileno()))
mflags = os.environ.get("MAKEFLAGS", False)
if mflags:
m = re.search(r"--jobserver-[^=]*=(\d),(\d)", mflags)
if m:
jobserver_fd1 = MultiProcessFd(int(m.group(1)))
jobserver_fd2 = MultiProcessFd(int(m.group(2)))
jobserver_fd1 = Connection(int(m.group(1)))
jobserver_fd2 = Connection(int(m.group(2)))
p = multiprocessing.Process(
target=_setup_pkg_and_run,
@@ -1261,7 +1321,7 @@ def child_fun():
function,
kwargs,
write_pipe,
input_multiprocess_fd,
input_fd,
jobserver_fd1,
jobserver_fd2,
),
@@ -1281,8 +1341,8 @@ def child_fun():
finally:
# Close the input stream in the parent process
if input_multiprocess_fd is not None:
input_multiprocess_fd.close()
if input_fd is not None:
input_fd.close()
def exitcode_msg(p):
typ = "exit" if p.exitcode >= 0 else "signal"

View File

@@ -162,9 +162,7 @@ def initconfig_compiler_entries(self):
ld_flags = " ".join(flags["ldflags"])
ld_format_string = "CMAKE_{0}_LINKER_FLAGS"
# CMake has separate linker arguments for types of builds.
# 'ldflags' should not be used with CMAKE_STATIC_LINKER_FLAGS which
# is used by the archiver, so don't include "STATIC" in this loop:
for ld_type in ["EXE", "MODULE", "SHARED"]:
for ld_type in ["EXE", "MODULE", "SHARED", "STATIC"]:
ld_string = ld_format_string.format(ld_type)
entries.append(cmake_cache_string(ld_string, ld_flags))

View File

@@ -110,8 +110,9 @@ def cuda_flags(arch_list):
# From the NVIDIA install guide we know of conflicts for particular
# platforms (linux, darwin), architectures (x86, powerpc) and compilers
# (gcc, clang). We don't restrict %gcc and %clang conflicts to
# platform=linux, since they may apply to platform=darwin. We currently
# do not provide conflicts for platform=darwin with %apple-clang.
# platform=linux, since they should also apply to platform=cray, and may
# apply to platform=darwin. We currently do not provide conflicts for
# platform=darwin with %apple-clang.
# Linux x86_64 compiler conflicts from here:
# https://gist.github.com/ax3l/9489132
@@ -136,14 +137,11 @@ def cuda_flags(arch_list):
conflicts("%gcc@11.2:", when="+cuda ^cuda@:11.5")
conflicts("%gcc@12:", when="+cuda ^cuda@:11.8")
conflicts("%gcc@13:", when="+cuda ^cuda@:12.3")
conflicts("%gcc@14:", when="+cuda ^cuda@:12.4")
conflicts("%clang@12:", when="+cuda ^cuda@:11.4.0")
conflicts("%clang@13:", when="+cuda ^cuda@:11.5")
conflicts("%clang@14:", when="+cuda ^cuda@:11.7")
conflicts("%clang@15:", when="+cuda ^cuda@:12.0")
conflicts("%clang@16:", when="+cuda ^cuda@:12.1")
conflicts("%clang@17:", when="+cuda ^cuda@:12.3")
conflicts("%clang@18:", when="+cuda ^cuda@:12.4")
conflicts("%clang@16:", when="+cuda ^cuda@:12.3")
# https://gist.github.com/ax3l/9489132#gistcomment-3860114
conflicts("%gcc@10", when="+cuda ^cuda@:11.4.0")

View File

@@ -846,7 +846,6 @@ def scalapack_libs(self):
"^mpich@2:" in spec_root
or "^cray-mpich" in spec_root
or "^mvapich2" in spec_root
or "^mvapich" in spec_root
or "^intel-mpi" in spec_root
or "^intel-oneapi-mpi" in spec_root
or "^intel-parallel-studio" in spec_root
@@ -937,15 +936,32 @@ def mpi_setup_dependent_build_environment(self, env, dependent_spec, compilers_o
"I_MPI_ROOT": self.normalize_path("mpi"),
}
compiler_wrapper_commands = self.mpi_compiler_wrappers
wrapper_vars.update(
{
"MPICC": compiler_wrapper_commands["MPICC"],
"MPICXX": compiler_wrapper_commands["MPICXX"],
"MPIF77": compiler_wrapper_commands["MPIF77"],
"MPIF90": compiler_wrapper_commands["MPIF90"],
}
)
# CAUTION - SIMILAR code in:
# var/spack/repos/builtin/packages/mpich/package.py
# var/spack/repos/builtin/packages/openmpi/package.py
# var/spack/repos/builtin/packages/mvapich2/package.py
#
# On Cray, the regular compiler wrappers *are* the MPI wrappers.
if "platform=cray" in self.spec:
# TODO: Confirm
wrapper_vars.update(
{
"MPICC": compilers_of_client["CC"],
"MPICXX": compilers_of_client["CXX"],
"MPIF77": compilers_of_client["F77"],
"MPIF90": compilers_of_client["F90"],
}
)
else:
compiler_wrapper_commands = self.mpi_compiler_wrappers
wrapper_vars.update(
{
"MPICC": compiler_wrapper_commands["MPICC"],
"MPICXX": compiler_wrapper_commands["MPICXX"],
"MPIF77": compiler_wrapper_commands["MPIF77"],
"MPIF90": compiler_wrapper_commands["MPIF90"],
}
)
# Ensure that the directory containing the compiler wrappers is in the
# PATH. Spack packages add `prefix.bin` to their dependents' paths,

View File

@@ -24,6 +24,7 @@ class MSBuildPackage(spack.package_base.PackageBase):
build_system("msbuild")
conflicts("platform=linux", when="build_system=msbuild")
conflicts("platform=darwin", when="build_system=msbuild")
conflicts("platform=cray", when="build_system=msbuild")
@spack.builder.builder("msbuild")

View File

@@ -24,6 +24,7 @@ class NMakePackage(spack.package_base.PackageBase):
build_system("nmake")
conflicts("platform=linux", when="build_system=nmake")
conflicts("platform=darwin", when="build_system=nmake")
conflicts("platform=cray", when="build_system=nmake")
@spack.builder.builder("nmake")

View File

@@ -36,8 +36,9 @@ class IntelOneApiPackage(Package):
"target=ppc64:",
"target=ppc64le:",
"target=aarch64:",
"platform=darwin",
"platform=windows",
"platform=darwin:",
"platform=cray:",
"platform=windows:",
]:
conflicts(c, msg="This package in only available for x86_64 and Linux")

View File

@@ -22,6 +22,8 @@
from urllib.parse import urlencode
from urllib.request import HTTPHandler, Request, build_opener
import ruamel.yaml
import llnl.util.filesystem as fs
import llnl.util.tty as tty
from llnl.util.lang import memoized
@@ -1111,7 +1113,7 @@ def main_script_replacements(cmd):
if cdash_handler and cdash_handler.auth_token:
try:
cdash_handler.populate_buildgroup(all_job_names)
except (SpackError, HTTPError, URLError) as err:
except (SpackError, HTTPError, URLError, TimeoutError) as err:
tty.warn(f"Problem populating buildgroup: {err}")
else:
tty.warn("Unable to populate buildgroup without CDash credentials")
@@ -1310,8 +1312,11 @@ def main_script_replacements(cmd):
if not rebuild_everything:
sys.exit(1)
with open(output_file, "w") as outf:
outf.write(syaml.dump(sorted_output, default_flow_style=True))
# Minimize yaml output size through use of anchors
syaml.anchorify(sorted_output)
with open(output_file, "w") as f:
ruamel.yaml.YAML().dump(sorted_output, f)
def _url_encode_string(input_string):
@@ -2095,7 +2100,7 @@ def read_broken_spec(broken_spec_url):
"""
try:
_, _, fs = web_util.read_from_url(broken_spec_url)
except (URLError, web_util.SpackWebError, HTTPError):
except web_util.SpackWebError:
tty.warn(f"Unable to read broken spec from {broken_spec_url}")
return None

View File

@@ -813,7 +813,7 @@ def _push_oci(
def extra_config(spec: Spec):
spec_dict = spec.to_dict(hash=ht.dag_hash)
spec_dict["buildcache_layout_version"] = 1
spec_dict["buildcache_layout_version"] = bindist.CURRENT_BUILD_CACHE_LAYOUT_VERSION
spec_dict["binary_cache_checksum"] = {
"hash_algorithm": "sha256",
"hash": checksums[spec.dag_hash()].compressed_digest.digest,

View File

@@ -106,8 +106,7 @@ def clean(parser, args):
# Then do the cleaning falling through the cases
if args.specs:
specs = spack.cmd.parse_specs(args.specs, concretize=False)
specs = list(spack.cmd.matching_spec_from_env(x) for x in specs)
specs = spack.cmd.parse_specs(args.specs, concretize=True)
for spec in specs:
msg = "Cleaning build stage [{0}]"
tty.msg(msg.format(spec.short_spec))

View File

@@ -11,7 +11,6 @@
from argparse import ArgumentParser, Namespace
from typing import IO, Any, Callable, Dict, Iterable, List, Optional, Sequence, Set, Tuple, Union
import llnl.util.filesystem as fs
import llnl.util.tty as tty
from llnl.util.argparsewriter import ArgparseRstWriter, ArgparseWriter, Command
from llnl.util.tty.colify import colify
@@ -867,9 +866,6 @@ def _commands(parser: ArgumentParser, args: Namespace) -> None:
prepend_header(args, f)
formatter(args, f)
if args.update_completion:
fs.set_executable(args.update)
else:
prepend_header(args, sys.stdout)
formatter(args, sys.stdout)

View File

@@ -661,34 +661,32 @@ def mirror_name_or_url(m):
# accidentally to a dir in the current working directory.
# If there's a \ or / in the name, it's interpreted as a path or url.
if "/" in m or "\\" in m:
if "/" in m or "\\" in m or m in (".", ".."):
return spack.mirror.Mirror(m)
# Otherwise, the named mirror is required to exist.
try:
return spack.mirror.require_mirror_name(m)
except ValueError as e:
raise argparse.ArgumentTypeError(
str(e) + ". Did you mean {}?".format(os.path.join(".", m))
)
raise argparse.ArgumentTypeError(f"{e}. Did you mean {os.path.join('.', m)}?") from e
def mirror_url(url):
try:
return spack.mirror.Mirror.from_url(url)
except ValueError as e:
raise argparse.ArgumentTypeError(str(e))
raise argparse.ArgumentTypeError(str(e)) from e
def mirror_directory(path):
try:
return spack.mirror.Mirror.from_local_path(path)
except ValueError as e:
raise argparse.ArgumentTypeError(str(e))
raise argparse.ArgumentTypeError(str(e)) from e
def mirror_name(name):
try:
return spack.mirror.require_mirror_name(name)
except ValueError as e:
raise argparse.ArgumentTypeError(str(e))
raise argparse.ArgumentTypeError(str(e)) from e

View File

@@ -3,9 +3,6 @@
#
# SPDX-License-Identifier: (Apache-2.0 OR MIT)
import llnl.util.tty as tty
from llnl.string import plural
import spack.cmd
import spack.cmd.common.arguments
import spack.environment as ev
@@ -46,9 +43,5 @@ def concretize(parser, args):
with env.write_transaction():
concretized_specs = env.concretize(force=args.force, tests=tests)
if not args.quiet:
if concretized_specs:
tty.msg(f"Concretized {plural(len(concretized_specs), 'spec')}:")
ev.display_specs([concrete for _, concrete in concretized_specs])
else:
tty.msg("No new specs to concretize.")
ev.display_specs(concretized_specs)
env.write()

View File

@@ -76,7 +76,6 @@ def _retrieve_develop_source(spec, abspath):
# mirror might store an instance with truncated history.
package.stage[0].disable_mirrors()
package.stage[0].fetcher.set_package(package)
package.stage.steal_source(abspath)

View File

@@ -3,7 +3,6 @@
#
# SPDX-License-Identifier: (Apache-2.0 OR MIT)
import errno
import glob
import os
@@ -12,13 +11,43 @@
import spack.cmd
import spack.paths
import spack.repo
import spack.util.editor
from spack.spec import Spec
from spack.util.editor import editor
description = "open package files in $EDITOR"
section = "packaging"
level = "short"
def edit_package(name, repo_path, namespace):
"""Opens the requested package file in your favorite $EDITOR.
Args:
name (str): The name of the package
repo_path (str): The path to the repository containing this package
namespace (str): A valid namespace registered with Spack
"""
# Find the location of the package
if repo_path:
repo = spack.repo.Repo(repo_path)
elif namespace:
repo = spack.repo.PATH.get_repo(namespace)
else:
repo = spack.repo.PATH
path = repo.filename_for_package_name(name)
spec = Spec(name)
if os.path.exists(path):
if not os.path.isfile(path):
tty.die("Something is wrong. '{0}' is not a file!".format(path))
if not os.access(path, os.R_OK):
tty.die("Insufficient permissions on '%s'!" % path)
else:
raise spack.repo.UnknownPackageError(spec.name)
editor(path)
def setup_parser(subparser):
excl_args = subparser.add_mutually_exclusive_group()
@@ -69,67 +98,41 @@ def setup_parser(subparser):
excl_args.add_argument("-r", "--repo", default=None, help="path to repo to edit package in")
excl_args.add_argument("-N", "--namespace", default=None, help="namespace of package to edit")
subparser.add_argument("package", nargs="*", default=None, help="package name")
def locate_package(name: str, repo: spack.repo.Repo) -> str:
path = repo.filename_for_package_name(name)
try:
with open(path, "r"):
return path
except OSError as e:
if e.errno == errno.ENOENT:
raise spack.repo.UnknownPackageError(name) from e
tty.die(f"Cannot edit package: {e}")
def locate_file(name: str, path: str) -> str:
# convert command names to python module name
if path == spack.paths.command_path:
name = spack.cmd.python_name(name)
file_path = os.path.join(path, name)
# Try to open direct match.
try:
with open(file_path, "r"):
return file_path
except OSError as e:
if e.errno != errno.ENOENT:
tty.die(f"Cannot edit file: {e}")
pass
# Otherwise try to find a file that starts with the name
candidates = glob.glob(file_path + "*")
exclude_list = [".pyc", "~"] # exclude binaries and backups
files = [f for f in candidates if not any(f.endswith(ext) for ext in exclude_list)]
if len(files) > 1:
tty.die(
f"Multiple files start with `{name}`:\n"
+ "\n".join(f" {os.path.basename(f)}" for f in files)
)
elif not files:
tty.die(f"No file for '{name}' was found in {path}")
return files[0]
subparser.add_argument("package", nargs="?", default=None, help="package name")
def edit(parser, args):
names = args.package
name = args.package
# By default, edit package files
path = spack.paths.packages_path
# If `--command`, `--test`, or `--module` is chosen, edit those instead
if args.path:
paths = [locate_file(name, args.path) for name in names] if names else [args.path]
spack.util.editor.editor(*paths)
elif names:
if args.repo:
repo = spack.repo.Repo(args.repo)
elif args.namespace:
repo = spack.repo.PATH.get_repo(args.namespace)
else:
repo = spack.repo.PATH
paths = [locate_package(name, repo) for name in names]
spack.util.editor.editor(*paths)
path = args.path
if name:
# convert command names to python module name
if path == spack.paths.command_path:
name = spack.cmd.python_name(name)
path = os.path.join(path, name)
if not os.path.exists(path):
files = glob.glob(path + "*")
exclude_list = [".pyc", "~"] # exclude binaries and backups
files = list(filter(lambda x: all(s not in x for s in exclude_list), files))
if len(files) > 1:
m = "Multiple files exist with the name {0}.".format(name)
m += " Please specify a suffix. Files are:\n\n"
for f in files:
m += " " + os.path.basename(f) + "\n"
tty.die(m)
if not files:
tty.die("No file for '{0}' was found in {1}".format(name, path))
path = files[0] # already confirmed only one entry in files
editor(path)
elif name:
edit_package(name, args.repo, args.namespace)
else:
# By default open the directory where packages live
spack.util.editor.editor(spack.paths.packages_path)
editor(path)

View File

@@ -468,32 +468,30 @@ def env_remove(args):
This removes an environment managed by Spack. Directory environments
and manifests embedded in repositories should be removed manually.
"""
read_envs = []
remove_envs = []
valid_envs = []
bad_envs = []
invalid_envs = []
for env_name in ev.all_environment_names():
try:
env = ev.read(env_name)
valid_envs.append(env_name)
valid_envs.append(env)
if env_name in args.rm_env:
read_envs.append(env)
remove_envs.append(env)
except (spack.config.ConfigFormatError, ev.SpackEnvironmentConfigError):
invalid_envs.append(env_name)
if env_name in args.rm_env:
bad_envs.append(env_name)
# Check if env is linked to another before trying to remove
for name in valid_envs:
# Check if remove_env is included from another env before trying to remove
for env in valid_envs:
for remove_env in remove_envs:
# don't check if environment is included to itself
if name == env_name:
if env.name == remove_env.name:
continue
environ = ev.Environment(ev.root(name))
if ev.root(env_name) in environ.included_concrete_envs:
msg = f'Environment "{env_name}" is being used by environment "{name}"'
if remove_env.path in env.included_concrete_envs:
msg = f'Environment "{remove_env.name}" is being used by environment "{env.name}"'
if args.force:
tty.warn(msg)
else:
@@ -506,7 +504,7 @@ def env_remove(args):
if not answer:
tty.die("Will not remove any environments")
for env in read_envs:
for env in remove_envs:
name = env.name
if env.active:
tty.die(f"Environment {name} can't be removed while activated.")

View File

@@ -169,9 +169,9 @@ def query_arguments(args):
if (args.missing or args.only_missing) and not args.only_deprecated:
installed.append(InstallStatuses.MISSING)
known = any
predicate_fn = None
if args.unknown:
known = False
predicate_fn = lambda x: not spack.repo.PATH.exists(x.spec.name)
explicit = any
if args.explicit:
@@ -179,7 +179,7 @@ def query_arguments(args):
if args.implicit:
explicit = False
q_args = {"installed": installed, "known": known, "explicit": explicit}
q_args = {"installed": installed, "predicate_fn": predicate_fn, "explicit": explicit}
install_tree = args.install_tree
upstreams = spack.config.get("upstreams", {})

View File

@@ -50,7 +50,7 @@
@B{++}, @r{--}, @r{~~}, @B{==} propagate variants to package dependencies
architecture variants:
@m{platform=platform} linux, darwin, freebsd, windows
@m{platform=platform} linux, darwin, cray, etc.
@m{os=operating_system} specific <operating_system>
@m{target=target} specific <target> processor
@m{arch=platform-os-target} shortcut for all three above

View File

@@ -10,7 +10,6 @@
from typing import List
import llnl.util.filesystem as fs
from llnl.string import plural
from llnl.util import lang, tty
import spack.build_environment
@@ -376,9 +375,7 @@ def _maybe_add_and_concretize(args, env, specs):
# `spack concretize`
tests = compute_tests_install_kwargs(env.user_specs, args.test)
concretized_specs = env.concretize(tests=tests)
if concretized_specs:
tty.msg(f"Concretized {plural(len(concretized_specs), 'spec')}")
ev.display_specs([concrete for _, concrete in concretized_specs])
ev.display_specs(concretized_specs)
# save view regeneration for later, so that we only do it
# once, as it can be slow.

View File

@@ -101,8 +101,9 @@ def do_mark(specs, explicit):
specs (list): list of specs to be marked
explicit (bool): whether to mark specs as explicitly installed
"""
for spec in specs:
spack.store.STORE.db.update_explicit(spec, explicit)
with spack.store.STORE.db.write_transaction():
for spec in specs:
spack.store.STORE.db.mark(spec, "explicit", explicit)
def mark_specs(args, specs):

View File

@@ -377,7 +377,10 @@ def refresh(module_type, specs, args):
def modules_cmd(parser, args, module_type, callbacks=callbacks):
# Qualifiers to be used when querying the db for specs
constraint_qualifiers = {
"refresh": {"installed": True, "known": lambda x: not spack.repo.PATH.exists(x)}
"refresh": {
"installed": True,
"predicate_fn": lambda x: spack.repo.PATH.exists(x.spec.name),
}
}
query_args = constraint_qualifiers.get(args.subparser_name, {})

View File

@@ -114,16 +114,15 @@ def _process_result(result, show, required_format, kwargs):
# dump the solutions as concretized specs
if "solutions" in show:
if required_format:
for spec in result.specs:
# With -y, just print YAML to output.
if required_format == "yaml":
# use write because to_yaml already has a newline.
sys.stdout.write(spec.to_yaml(hash=ht.dag_hash))
elif required_format == "json":
sys.stdout.write(spec.to_json(hash=ht.dag_hash))
else:
sys.stdout.write(spack.spec.tree(result.specs, color=sys.stdout.isatty(), **kwargs))
for spec in result.specs:
# With -y, just print YAML to output.
if required_format == "yaml":
# use write because to_yaml already has a newline.
sys.stdout.write(spec.to_yaml(hash=ht.dag_hash))
elif required_format == "json":
sys.stdout.write(spec.to_json(hash=ht.dag_hash))
else:
sys.stdout.write(spec.tree(color=sys.stdout.isatty(), **kwargs))
print()
if result.unsolved_specs and "solutions" in show:

View File

@@ -105,19 +105,11 @@ def spec(parser, args):
if env:
env.concretize()
specs = env.concretized_specs()
# environments are printed together in a combined tree() invocation,
# except when using --yaml or --json, which we print spec by spec below.
if not args.format:
tree_kwargs["key"] = spack.traverse.by_dag_hash
tree_kwargs["hashes"] = args.long or args.very_long
print(spack.spec.tree([concrete for _, concrete in specs], **tree_kwargs))
return
else:
tty.die("spack spec requires at least one spec or an active environment")
for input, output in specs:
# With --yaml or --json, just print the raw specs to output
# With -y, just print YAML to output.
if args.format:
if args.format == "yaml":
# use write because to_yaml already has a newline.

View File

@@ -151,8 +151,7 @@ def is_installed(spec):
key=lambda s: s.dag_hash(),
)
with spack.store.STORE.db.read_transaction():
return [spec for spec in specs if is_installed(spec)]
return [spec for spec in specs if is_installed(spec)]
def dependent_environments(
@@ -240,8 +239,6 @@ def get_uninstall_list(args, specs: List[spack.spec.Spec], env: Optional[ev.Envi
print()
tty.info("The following environments still reference these specs:")
colify([e.name for e in other_dependent_envs.keys()], indent=4)
if env:
msgs.append("use `spack remove` to remove the spec from the current environment")
msgs.append("use `spack env remove` to remove environments")
msgs.append("use `spack uninstall --force` to override")
print()

View File

@@ -290,7 +290,7 @@ def __init__(
operating_system,
target,
paths,
modules=None,
modules: Optional[List[str]] = None,
alias=None,
environment=None,
extra_rpaths=None,
@@ -695,6 +695,10 @@ def compiler_environment(self):
try:
# load modules and set env variables
for module in self.modules:
# On cray, mic-knl module cannot be loaded without cce module
# See: https://github.com/spack/spack/issues/3153
if os.environ.get("CRAY_CPU_TARGET") == "mic-knl":
spack.util.module_cmd.load_module("cce")
spack.util.module_cmd.load_module(module)
# apply other compiler environment changes

View File

@@ -96,8 +96,6 @@ def verbose_flag(self):
openmp_flag = "-fopenmp"
# C++ flags based on CMake Modules/Compiler/Clang.cmake
@property
def cxx11_flag(self):
if self.real_version < Version("3.3"):
@@ -122,24 +120,6 @@ def cxx17_flag(self):
return "-std=c++17"
@property
def cxx20_flag(self):
if self.real_version < Version("5.0"):
raise UnsupportedCompilerFlag(self, "the C++20 standard", "cxx20_flag", "< 5.0")
elif self.real_version < Version("11.0"):
return "-std=c++2a"
else:
return "-std=c++20"
@property
def cxx23_flag(self):
if self.real_version < Version("12.0"):
raise UnsupportedCompilerFlag(self, "the C++23 standard", "cxx23_flag", "< 12.0")
elif self.real_version < Version("17.0"):
return "-std=c++2b"
else:
return "-std=c++23"
@property
def c99_flag(self):
return "-std=c99"
@@ -162,10 +142,7 @@ def c17_flag(self):
def c23_flag(self):
if self.real_version < Version("9.0"):
raise UnsupportedCompilerFlag(self, "the C23 standard", "c23_flag", "< 9.0")
elif self.real_version < Version("18.0"):
return "-std=c2x"
else:
return "-std=c23"
return "-std=c2x"
@property
def cc_pic_flag(self):

View File

@@ -283,12 +283,9 @@ def __reduce__(self):
database. If it is a spec, we'll evaluate
``spec.satisfies(query_spec)``
known (bool or None): Specs that are "known" are those
for which Spack can locate a ``package.py`` file -- i.e.,
Spack "knows" how to install them. Specs that are unknown may
represent packages that existed in a previous version of
Spack, but have since either changed their name or
been removed
predicate_fn: optional predicate taking an InstallRecord as argument, and returning
whether that record is selected for the query. It can be used to craft criteria
that need some data for selection not provided by the Database itself.
installed (bool or InstallStatus or typing.Iterable or None):
if ``True``, includes only installed
@@ -588,6 +585,9 @@ def _path(self, spec: "spack.spec.Spec") -> pathlib.Path:
return self.dir / f"{spec.name}-{spec.dag_hash()}"
SelectType = Callable[[InstallRecord], bool]
class Database:
#: Fields written for each install record
record_fields: Tuple[str, ...] = DEFAULT_INSTALL_RECORD_FIELDS
@@ -1367,7 +1367,7 @@ def _deprecate(self, spec, deprecator):
self._data[spec_key] = spec_rec
@_autospec
def mark(self, spec, key, value):
def mark(self, spec: "spack.spec.Spec", key: str, value: Any) -> None:
"""Mark an arbitrary record on a spec."""
with self.write_transaction():
return self._mark(spec, key, value)
@@ -1516,7 +1516,7 @@ def get_by_hash(self, dag_hash, default=None, installed=any):
def _query(
self,
query_spec=any,
known=any,
predicate_fn: Optional[SelectType] = None,
installed=True,
explicit=any,
start_date=None,
@@ -1524,7 +1524,7 @@ def _query(
hashes=None,
in_buildcache=any,
origin=None,
):
) -> List["spack.spec.Spec"]:
"""Run a query on the database."""
# TODO: Specs are a lot like queries. Should there be a
@@ -1570,7 +1570,7 @@ def _query(
if explicit is not any and rec.explicit != explicit:
continue
if known is not any and known(rec.spec.name):
if predicate_fn is not None and not predicate_fn(rec):
continue
if start_date or end_date:
@@ -1655,14 +1655,14 @@ def query(self, *args, **kwargs):
query.__doc__ = ""
query.__doc__ += _QUERY_DOCSTRING
def query_one(self, query_spec, known=any, installed=True):
def query_one(self, query_spec, predicate_fn=None, installed=True):
"""Query for exactly one spec that matches the query spec.
Raises an assertion error if more than one spec matches the
query. Returns None if no installed package matches.
"""
concrete_specs = self.query(query_spec, known=known, installed=installed)
concrete_specs = self.query(query_spec, predicate_fn=predicate_fn, installed=installed)
assert len(concrete_specs) <= 1
return concrete_specs[0] if concrete_specs else None
@@ -1709,24 +1709,6 @@ def root(key, record):
if id(rec.spec) not in needed and rec.installed
]
def update_explicit(self, spec, explicit):
"""
Update the spec's explicit state in the database.
Args:
spec (spack.spec.Spec): the spec whose install record is being updated
explicit (bool): ``True`` if the package was requested explicitly
by the user, ``False`` if it was pulled in as a dependency of
an explicit package.
"""
rec = self.get_record(spec)
if explicit != rec.explicit:
with self.write_transaction():
message = "{s.name}@{s.version} : marking the package {0}"
status = "explicit" if explicit else "implicit"
tty.debug(message.format(status, s=spec))
rec.explicit = explicit
class UpstreamDatabaseLockingError(SpackError):
"""Raised when an operation would need to lock an upstream database"""

View File

@@ -97,7 +97,7 @@ class OpenMpi(Package):
PatchesType = Optional[Union[Patcher, str, List[Union[Patcher, str]]]]
SUPPORTED_LANGUAGES = ("fortran", "cxx")
SUPPORTED_LANGUAGES = ("fortran", "cxx", "c")
def _make_when_spec(value: WhenType) -> Optional["spack.spec.Spec"]:

View File

@@ -9,11 +9,13 @@
import os
import re
import shlex
from enum import Enum
from typing import List, Optional
import spack.deptypes as dt
import spack.environment.environment as ev
import spack.paths
import spack.spec
import spack.traverse as traverse
@@ -226,6 +228,7 @@ def to_dict(self):
"install_deps_target": self._target("install-deps"),
"any_hash_target": self._target("%"),
"jobserver_support": self.jobserver_support,
"spack_script": shlex.quote(spack.paths.spack_script),
"adjacency_list": self.make_adjacency_list,
"phony_convenience_targets": " ".join(self.phony_convenience_targets),
"pkg_ids_variable": self.pkg_identifier_variable,

View File

@@ -24,7 +24,6 @@
from llnl.util.link_tree import ConflictingSpecsError
from llnl.util.symlink import readlink, symlink
import spack.cmd
import spack.compilers
import spack.concretize
import spack.config
@@ -1191,7 +1190,6 @@ def scope_name(self):
def include_concrete_envs(self):
"""Copy and save the included envs' specs internally"""
lockfile_meta = None
root_hash_seen = set()
concrete_hash_seen = set()
self.included_concrete_spec_data = {}
@@ -1202,37 +1200,26 @@ def include_concrete_envs(self):
raise SpackEnvironmentError(f"Unable to find env at {env_path}")
env = Environment(env_path)
with open(env.lock_path) as f:
lockfile_as_dict = env._read_lockfile(f)
# Lockfile_meta must match each env and use at least format version 5
if lockfile_meta is None:
lockfile_meta = lockfile_as_dict["_meta"]
elif lockfile_meta != lockfile_as_dict["_meta"]:
raise SpackEnvironmentError("All lockfile _meta values must match")
elif lockfile_meta["lockfile-version"] < 5:
raise SpackEnvironmentError("The lockfile format must be at version 5 or higher")
self.included_concrete_spec_data[env_path] = {"roots": [], "concrete_specs": {}}
# Copy unique root specs from env
self.included_concrete_spec_data[env_path] = {"roots": []}
for root_dict in lockfile_as_dict["roots"]:
for root_dict in env._concrete_roots_dict():
if root_dict["hash"] not in root_hash_seen:
self.included_concrete_spec_data[env_path]["roots"].append(root_dict)
root_hash_seen.add(root_dict["hash"])
# Copy unique concrete specs from env
for concrete_spec in lockfile_as_dict["concrete_specs"]:
if concrete_spec not in concrete_hash_seen:
self.included_concrete_spec_data[env_path].update(
{"concrete_specs": lockfile_as_dict["concrete_specs"]}
for dag_hash, spec_details in env._concrete_specs_dict().items():
if dag_hash not in concrete_hash_seen:
self.included_concrete_spec_data[env_path]["concrete_specs"].update(
{dag_hash: spec_details}
)
concrete_hash_seen.add(concrete_spec)
concrete_hash_seen.add(dag_hash)
if "include_concrete" in lockfile_as_dict.keys():
self.included_concrete_spec_data[env_path]["include_concrete"] = lockfile_as_dict[
"include_concrete"
]
# Copy transitive include data
transitive = env.included_concrete_spec_data
if transitive:
self.included_concrete_spec_data[env_path]["include_concrete"] = transitive
self._read_lockfile_dict(self._to_lockfile_dict())
self.write()
@@ -2151,16 +2138,23 @@ def _get_environment_specs(self, recurse_dependencies=True):
return specs
def _to_lockfile_dict(self):
"""Create a dictionary to store a lockfile for this environment."""
def _concrete_specs_dict(self):
concrete_specs = {}
for s in traverse.traverse_nodes(self.specs_by_hash.values(), key=traverse.by_dag_hash):
spec_dict = s.node_dict_with_hashes(hash=ht.dag_hash)
# Assumes no legacy formats, since this was just created.
spec_dict[ht.dag_hash.name] = s.dag_hash()
concrete_specs[s.dag_hash()] = spec_dict
return concrete_specs
def _concrete_roots_dict(self):
hash_spec_list = zip(self.concretized_order, self.concretized_user_specs)
return [{"hash": h, "spec": str(s)} for h, s in hash_spec_list]
def _to_lockfile_dict(self):
"""Create a dictionary to store a lockfile for this environment."""
concrete_specs = self._concrete_specs_dict()
root_specs = self._concrete_roots_dict()
spack_dict = {"version": spack.spack_version}
spack_commit = spack.main.get_spack_commit()
@@ -2181,7 +2175,7 @@ def _to_lockfile_dict(self):
# spack version information
"spack": spack_dict,
# users specs + hashes are the 'roots' of the environment
"roots": [{"hash": h, "spec": str(s)} for h, s in hash_spec_list],
"roots": root_specs,
# Concrete specs by hash, including dependencies
"concrete_specs": concrete_specs,
}
@@ -2474,21 +2468,27 @@ def _equiv_dict(first, second):
return same_values and same_keys_with_same_overrides
def display_specs(specs):
"""Displays a list of specs traversed breadth-first, covering nodes, with install status.
def display_specs(concretized_specs):
"""Displays the list of specs returned by `Environment.concretize()`.
Args:
specs (list): list of specs
concretized_specs (list): list of specs returned by
`Environment.concretize()`
"""
tree_string = spack.spec.tree(
specs,
format=spack.spec.DISPLAY_FORMAT,
hashes=True,
hashlen=7,
status_fn=spack.spec.Spec.install_status,
key=traverse.by_dag_hash,
)
print(tree_string)
def _tree_to_display(spec):
return spec.tree(
recurse_dependencies=True,
format=spack.spec.DISPLAY_FORMAT,
status_fn=spack.spec.Spec.install_status,
hashlen=7,
hashes=True,
)
for user_spec, concrete_spec in concretized_specs:
tty.msg("Concretized {0}".format(user_spec))
sys.stdout.write(_tree_to_display(concrete_spec))
print("")
def _concretize_from_constraints(spec_constraints, tests=False):

View File

@@ -30,6 +30,7 @@
import shutil
import urllib.error
import urllib.parse
import urllib.request
from pathlib import PurePath
from typing import List, Optional
@@ -273,10 +274,7 @@ def __init__(self, url=None, checksum=None, **kwargs):
@property
def curl(self):
if not self._curl:
try:
self._curl = which("curl", required=True)
except CommandNotFoundError as exc:
tty.error(str(exc))
self._curl = web_util.require_curl()
return self._curl
def source_id(self):
@@ -297,27 +295,23 @@ def candidate_urls(self):
@_needs_stage
def fetch(self):
if self.archive_file:
tty.debug("Already downloaded {0}".format(self.archive_file))
tty.debug(f"Already downloaded {self.archive_file}")
return
url = None
errors = []
errors: List[Exception] = []
for url in self.candidate_urls:
if not web_util.url_exists(url):
tty.debug("URL does not exist: " + url)
continue
try:
self._fetch_from_url(url)
break
except FailedDownloadError as e:
errors.append(str(e))
for msg in errors:
tty.debug(msg)
errors.extend(e.exceptions)
else:
raise FailedDownloadError(*errors)
if not self.archive_file:
raise FailedDownloadError(url)
raise FailedDownloadError(
RuntimeError(f"Missing archive {self.archive_file} after fetching")
)
def _fetch_from_url(self, url):
if spack.config.get("config:url_fetch_method") == "curl":
@@ -336,19 +330,20 @@ def _check_headers(self, headers):
@_needs_stage
def _fetch_urllib(self, url):
save_file = self.stage.save_filename
tty.msg("Fetching {0}".format(url))
# Run urllib but grab the mime type from the http headers
request = urllib.request.Request(url, headers={"User-Agent": web_util.SPACK_USER_AGENT})
try:
url, headers, response = web_util.read_from_url(url)
except web_util.SpackWebError as e:
response = web_util.urlopen(request)
except (TimeoutError, urllib.error.URLError) as e:
# clean up archive on failure.
if self.archive_file:
os.remove(self.archive_file)
if os.path.lexists(save_file):
os.remove(save_file)
msg = "urllib failed to fetch with error {0}".format(e)
raise FailedDownloadError(url, msg)
raise FailedDownloadError(e) from e
tty.msg(f"Fetching {url}")
if os.path.lexists(save_file):
os.remove(save_file)
@@ -356,7 +351,7 @@ def _fetch_urllib(self, url):
with open(save_file, "wb") as _open_file:
shutil.copyfileobj(response, _open_file)
self._check_headers(str(headers))
self._check_headers(str(response.headers))
@_needs_stage
def _fetch_curl(self, url):
@@ -365,7 +360,7 @@ def _fetch_curl(self, url):
if self.stage.save_filename:
save_file = self.stage.save_filename
partial_file = self.stage.save_filename + ".part"
tty.msg("Fetching {0}".format(url))
tty.msg(f"Fetching {url}")
if partial_file:
save_args = [
"-C",
@@ -405,8 +400,8 @@ def _fetch_curl(self, url):
try:
web_util.check_curl_code(curl.returncode)
except spack.error.FetchError as err:
raise spack.fetch_strategy.FailedDownloadError(url, str(err))
except spack.error.FetchError as e:
raise FailedDownloadError(e) from e
self._check_headers(headers)
@@ -554,13 +549,13 @@ def fetch(self):
try:
response = self._urlopen(self.url)
except urllib.error.URLError as e:
except (TimeoutError, urllib.error.URLError) as e:
# clean up archive on failure.
if self.archive_file:
os.remove(self.archive_file)
if os.path.lexists(file):
os.remove(file)
raise FailedDownloadError(self.url, f"Failed to fetch {self.url}: {e}") from e
raise FailedDownloadError(e) from e
if os.path.lexists(file):
os.remove(file)
@@ -1312,35 +1307,41 @@ def __init__(self, *args, **kwargs):
@_needs_stage
def fetch(self):
if self.archive_file:
tty.debug("Already downloaded {0}".format(self.archive_file))
tty.debug(f"Already downloaded {self.archive_file}")
return
parsed_url = urllib.parse.urlparse(self.url)
if parsed_url.scheme != "s3":
raise spack.error.FetchError("S3FetchStrategy can only fetch from s3:// urls.")
tty.debug("Fetching {0}".format(self.url))
basename = os.path.basename(parsed_url.path)
request = urllib.request.Request(
self.url, headers={"User-Agent": web_util.SPACK_USER_AGENT}
)
with working_dir(self.stage.path):
_, headers, stream = web_util.read_from_url(self.url)
try:
response = web_util.urlopen(request)
except (TimeoutError, urllib.error.URLError) as e:
raise FailedDownloadError(e) from e
tty.debug(f"Fetching {self.url}")
with open(basename, "wb") as f:
shutil.copyfileobj(stream, f)
shutil.copyfileobj(response, f)
content_type = web_util.get_header(headers, "Content-type")
content_type = web_util.get_header(response.headers, "Content-type")
if content_type == "text/html":
warn_content_type_mismatch(self.archive_file or "the archive")
if self.stage.save_filename:
llnl.util.filesystem.rename(
os.path.join(self.stage.path, basename), self.stage.save_filename
)
fs.rename(os.path.join(self.stage.path, basename), self.stage.save_filename)
if not self.archive_file:
raise FailedDownloadError(self.url)
raise FailedDownloadError(
RuntimeError(f"Missing archive {self.archive_file} after fetching")
)
@fetcher
@@ -1366,17 +1367,23 @@ def fetch(self):
if parsed_url.scheme != "gs":
raise spack.error.FetchError("GCSFetchStrategy can only fetch from gs:// urls.")
tty.debug("Fetching {0}".format(self.url))
basename = os.path.basename(parsed_url.path)
request = urllib.request.Request(
self.url, headers={"User-Agent": web_util.SPACK_USER_AGENT}
)
with working_dir(self.stage.path):
_, headers, stream = web_util.read_from_url(self.url)
try:
response = web_util.urlopen(request)
except (TimeoutError, urllib.error.URLError) as e:
raise FailedDownloadError(e) from e
tty.debug(f"Fetching {self.url}")
with open(basename, "wb") as f:
shutil.copyfileobj(stream, f)
shutil.copyfileobj(response, f)
content_type = web_util.get_header(headers, "Content-type")
content_type = web_util.get_header(response.headers, "Content-type")
if content_type == "text/html":
warn_content_type_mismatch(self.archive_file or "the archive")
@@ -1385,7 +1392,9 @@ def fetch(self):
os.rename(os.path.join(self.stage.path, basename), self.stage.save_filename)
if not self.archive_file:
raise FailedDownloadError(self.url)
raise FailedDownloadError(
RuntimeError(f"Missing archive {self.archive_file} after fetching")
)
@fetcher
@@ -1722,9 +1731,9 @@ class NoCacheError(spack.error.FetchError):
class FailedDownloadError(spack.error.FetchError):
"""Raised when a download fails."""
def __init__(self, url, msg=""):
super().__init__("Failed to fetch file from URL: %s" % url, msg)
self.url = url
def __init__(self, *exceptions: Exception):
super().__init__("Failed to download")
self.exceptions = exceptions
class NoArchiveFileError(spack.error.FetchError):

View File

@@ -33,6 +33,7 @@
from llnl.util.tty.color import colorize
import spack.config
import spack.directory_layout
import spack.paths
import spack.projections
import spack.relocate
@@ -50,7 +51,7 @@
_projections_path = ".spack/projections.yaml"
LinkCallbackType = Callable[[str, str, "FilesystemView", Optional["spack.spec.Spec"]], None]
LinkCallbackType = Callable[[str, str, "FilesystemView", Optional[spack.spec.Spec]], None]
def view_symlink(src: str, dst: str, *args, **kwargs) -> None:
@@ -62,7 +63,7 @@ def view_hardlink(src: str, dst: str, *args, **kwargs) -> None:
def view_copy(
src: str, dst: str, view: "FilesystemView", spec: Optional["spack.spec.Spec"] = None
src: str, dst: str, view: "FilesystemView", spec: Optional[spack.spec.Spec] = None
) -> None:
"""
Copy a file from src to dst.
@@ -158,7 +159,7 @@ class FilesystemView:
def __init__(
self,
root: str,
layout: "spack.directory_layout.DirectoryLayout",
layout: spack.directory_layout.DirectoryLayout,
*,
projections: Optional[Dict] = None,
ignore_conflicts: bool = False,
@@ -180,7 +181,10 @@ def __init__(
# Setup link function to include view
self.link_type = link_type
self.link = ft.partial(function_for_link_type(link_type), view=self)
self._link = function_for_link_type(link_type)
def link(self, src: str, dst: str, spec: Optional[spack.spec.Spec] = None) -> None:
self._link(src, dst, self, spec)
def add_specs(self, *specs, **kwargs):
"""
@@ -281,7 +285,7 @@ class YamlFilesystemView(FilesystemView):
def __init__(
self,
root: str,
layout: "spack.directory_layout.DirectoryLayout",
layout: spack.directory_layout.DirectoryLayout,
*,
projections: Optional[Dict] = None,
ignore_conflicts: bool = False,

View File

@@ -41,8 +41,9 @@ def _populate_hooks(cls):
relative_names = list(list_modules(spack.paths.hooks_path))
# Ensure that write_install_manifest comes last
ensure_last(relative_names, "absolutify_elf_sonames", "write_install_manifest")
# write_install_manifest should come after any mutation of the install prefix, and
# autopush should include the install manifest.
ensure_last(relative_names, "absolutify_elf_sonames", "write_install_manifest", "autopush")
for name in relative_names:
module_name = __name__ + "." + name

View File

@@ -13,6 +13,7 @@
import spack.config
import spack.relocate
from spack.util.elf import ElfParsingError, parse_elf
from spack.util.executable import Executable
def is_shared_library_elf(filepath):
@@ -140,7 +141,7 @@ def post_install(spec, explicit=None):
return
# Only enable on platforms using ELF.
if not spec.satisfies("platform=linux"):
if not spec.satisfies("platform=linux") and not spec.satisfies("platform=cray"):
return
# Disable this hook when bootstrapping, to avoid recursion.
@@ -148,9 +149,10 @@ def post_install(spec, explicit=None):
return
# Should failing to locate patchelf be a hard error?
patchelf = spack.relocate._patchelf()
if not patchelf:
patchelf_path = spack.relocate._patchelf()
if not patchelf_path:
return
patchelf = Executable(patchelf_path)
fixes = find_and_patch_sonames(spec.prefix, spec.package.non_bindable_shared_objects, patchelf)

View File

@@ -117,7 +117,7 @@ def post_install(spec, explicit=None):
return
# Only enable on platforms using ELF.
if not spec.satisfies("platform=linux"):
if not spec.satisfies("platform=linux") and not spec.satisfies("platform=cray"):
return
visit_directory_tree(spec.prefix, ElfFilesWithRPathVisitor())

View File

@@ -440,7 +440,7 @@ def _process_external_package(pkg: "spack.package_base.PackageBase", explicit: b
tty.debug(f"{pre} already registered in DB")
record = spack.store.STORE.db.get_record(spec)
if explicit and not record.explicit:
spack.store.STORE.db.update_explicit(spec, explicit)
spack.store.STORE.db.mark(spec, "explicit", True)
except KeyError:
# If not, register it and generate the module file.
@@ -600,7 +600,9 @@ def dump_packages(spec: "spack.spec.Spec", path: str) -> None:
if node is spec:
spack.repo.PATH.dump_provenance(node, dest_pkg_dir)
elif source_pkg_dir:
fs.install_tree(source_pkg_dir, dest_pkg_dir)
fs.install_tree(
source_pkg_dir, dest_pkg_dir, allow_broken_symlinks=(sys.platform != "win32")
)
def get_dependent_ids(spec: "spack.spec.Spec") -> List[str]:
@@ -1361,8 +1363,8 @@ def _prepare_for_install(self, task: BuildTask) -> None:
self._update_installed(task)
# Only update the explicit entry once for the explicit package
if task.explicit:
spack.store.STORE.db.update_explicit(task.pkg.spec, True)
if task.explicit and not rec.explicit:
spack.store.STORE.db.mark(task.pkg.spec, "explicit", True)
def _cleanup_all_tasks(self) -> None:
"""Cleanup all build tasks to include releasing their locks."""
@@ -1542,17 +1544,6 @@ def _add_tasks(self, request: BuildRequest, all_deps):
tty.warn(f"Installation request refused: {str(err)}")
return
# Skip out early if the spec is not being installed locally (i.e., if
# external or upstream).
#
# External and upstream packages need to get flagged as installed to
# ensure proper status tracking for environment build.
explicit = request.pkg.spec.dag_hash() in request.install_args.get("explicit", [])
not_local = _handle_external_and_upstream(request.pkg, explicit)
if not_local:
self._flag_installed(request.pkg)
return
install_compilers = spack.config.get("config:install_missing_compilers", False)
install_deps = request.install_args.get("install_deps")
@@ -2029,11 +2020,10 @@ def install(self) -> None:
# Skip the installation if the spec is not being installed locally
# (i.e., if external or upstream) BUT flag it as installed since
# some package likely depends on it.
if not task.explicit:
if _handle_external_and_upstream(pkg, False):
term_status.clear()
self._flag_installed(pkg, task.dependents)
continue
if _handle_external_and_upstream(pkg, task.explicit):
term_status.clear()
self._flag_installed(pkg, task.dependents)
continue
# Flag a failed spec. Do not need an (install) prefix lock since
# assume using a separate (failed) prefix lock file.
@@ -2358,7 +2348,9 @@ def _install_source(self) -> None:
src_target = os.path.join(pkg.spec.prefix, "share", pkg.name, "src")
tty.debug(f"{self.pre} Copying source to {src_target}")
fs.install_tree(pkg.stage.source_path, src_target)
fs.install_tree(
pkg.stage.source_path, src_target, allow_broken_symlinks=(sys.platform != "win32")
)
def _real_install(self) -> None:
import spack.builder

View File

@@ -87,9 +87,8 @@ def from_url(url: str):
"""Create an anonymous mirror by URL. This method validates the URL."""
if not urllib.parse.urlparse(url).scheme in supported_url_schemes:
raise ValueError(
'"{}" is not a valid mirror URL. Scheme must be once of {}.'.format(
url, ", ".join(supported_url_schemes)
)
f'"{url}" is not a valid mirror URL. '
f"Scheme must be one of {supported_url_schemes}."
)
return Mirror(url)
@@ -734,7 +733,7 @@ def require_mirror_name(mirror_name):
"""Find a mirror by name and raise if it does not exist"""
mirror = spack.mirror.MirrorCollection().get(mirror_name)
if not mirror:
raise ValueError('no mirror named "{0}"'.format(mirror_name))
raise ValueError(f'no mirror named "{mirror_name}"')
return mirror

View File

@@ -3,12 +3,22 @@
#
# SPDX-License-Identifier: (Apache-2.0 OR MIT)
from ._operating_system import OperatingSystem
from .cray_backend import CrayBackend
from .cray_frontend import CrayFrontend
from .freebsd import FreeBSDOs
from .linux_distro import LinuxDistro
from .mac_os import MacOs
from .windows_os import WindowsOs
__all__ = ["OperatingSystem", "LinuxDistro", "MacOs", "WindowsOs", "FreeBSDOs"]
__all__ = [
"OperatingSystem",
"LinuxDistro",
"MacOs",
"CrayFrontend",
"CrayBackend",
"WindowsOs",
"FreeBSDOs",
]
#: List of all the Operating Systems known to Spack
operating_systems = [LinuxDistro, MacOs, WindowsOs, FreeBSDOs]
operating_systems = [LinuxDistro, MacOs, CrayFrontend, CrayBackend, WindowsOs, FreeBSDOs]

View File

@@ -0,0 +1,172 @@
# Copyright 2013-2024 Lawrence Livermore National Security, LLC and other
# Spack Project Developers. See the top-level COPYRIGHT file for details.
#
# SPDX-License-Identifier: (Apache-2.0 OR MIT)
import os
import re
import llnl.util.tty as tty
import spack.error
import spack.version
from spack.util.module_cmd import module
from .linux_distro import LinuxDistro
#: Possible locations of the Cray CLE release file,
#: which we look at to get the CNL OS version.
_cle_release_file = "/etc/opt/cray/release/cle-release"
_clerelease_file = "/etc/opt/cray/release/clerelease"
def read_cle_release_file():
"""Read the CLE release file and return a dict with its attributes.
This file is present on newer versions of Cray.
The release file looks something like this::
RELEASE=6.0.UP07
BUILD=6.0.7424
...
The dictionary we produce looks like this::
{
"RELEASE": "6.0.UP07",
"BUILD": "6.0.7424",
...
}
Returns:
dict: dictionary of release attributes
"""
with open(_cle_release_file) as release_file:
result = {}
for line in release_file:
# use partition instead of split() to ensure we only split on
# the first '=' in the line.
key, _, value = line.partition("=")
result[key] = value.strip()
return result
def read_clerelease_file():
"""Read the CLE release file and return the Cray OS version.
This file is present on older versions of Cray.
The release file looks something like this::
5.2.UP04
Returns:
str: the Cray OS version
"""
with open(_clerelease_file) as release_file:
for line in release_file:
return line.strip()
class CrayBackend(LinuxDistro):
"""Compute Node Linux (CNL) is the operating system used for the Cray XC
series super computers. It is a very stripped down version of GNU/Linux.
Any compilers found through this operating system will be used with
modules. If updated, user must make sure that version and name are
updated to indicate that OS has been upgraded (or downgraded)
"""
def __init__(self):
name = "cnl"
version = self._detect_crayos_version()
if version:
# If we found a CrayOS version, we do not want the information
# from LinuxDistro. In order to skip the logic from
# distro.linux_distribution, while still calling __init__
# methods further up the MRO, we skip LinuxDistro in the MRO and
# call the OperatingSystem superclass __init__ method
super(LinuxDistro, self).__init__(name, version)
else:
super().__init__()
self.modulecmd = module
def __str__(self):
return self.name + str(self.version)
@classmethod
def _detect_crayos_version(cls):
if os.path.isfile(_cle_release_file):
release_attrs = read_cle_release_file()
if "RELEASE" not in release_attrs:
# This Cray system uses a base OS not CLE/CNL
return None
v = spack.version.Version(release_attrs["RELEASE"])
return v[0]
elif os.path.isfile(_clerelease_file):
v = read_clerelease_file()
return spack.version.Version(v)[0]
else:
# Not all Cray systems run CNL on the backend.
# Systems running in what Cray calls "cluster" mode run other
# linux OSs under the Cray PE.
# So if we don't detect any Cray OS version on the system,
# we return None. We can't ever be sure we will get a Cray OS
# version.
# Returning None allows the calling code to test for the value
# being "True-ish" rather than requiring a try/except block.
return None
def arguments_to_detect_version_fn(self, paths):
import spack.compilers
command_arguments = []
for compiler_name in spack.compilers.supported_compilers():
cmp_cls = spack.compilers.class_for_compiler_name(compiler_name)
# If the compiler doesn't have a corresponding
# Programming Environment, skip to the next
if cmp_cls.PrgEnv is None:
continue
if cmp_cls.PrgEnv_compiler is None:
tty.die("Must supply PrgEnv_compiler with PrgEnv")
compiler_id = spack.compilers.CompilerID(self, compiler_name, None)
detect_version_args = spack.compilers.DetectVersionArgs(
id=compiler_id, variation=(None, None), language="cc", path="cc"
)
command_arguments.append(detect_version_args)
return command_arguments
def detect_version(self, detect_version_args):
import spack.compilers
modulecmd = self.modulecmd
compiler_name = detect_version_args.id.compiler_name
compiler_cls = spack.compilers.class_for_compiler_name(compiler_name)
output = modulecmd("avail", compiler_cls.PrgEnv_compiler)
version_regex = r"({0})/([\d\.]+[\d]-?[\w]*)".format(compiler_cls.PrgEnv_compiler)
matches = re.findall(version_regex, output)
version = tuple(version for _, version in matches if "classic" not in version)
compiler_id = detect_version_args.id
value = detect_version_args._replace(id=compiler_id._replace(version=version))
return value, None
def make_compilers(self, compiler_id, paths):
import spack.spec
name = compiler_id.compiler_name
cmp_cls = spack.compilers.class_for_compiler_name(name)
compilers = []
for v in compiler_id.version:
comp = cmp_cls(
spack.spec.CompilerSpec(name + "@=" + v),
self,
"any",
["cc", "CC", "ftn"],
[cmp_cls.PrgEnv, name + "/" + v],
)
compilers.append(comp)
return compilers

View File

@@ -0,0 +1,105 @@
# Copyright 2013-2024 Lawrence Livermore National Security, LLC and other
# Spack Project Developers. See the top-level COPYRIGHT file for details.
#
# SPDX-License-Identifier: (Apache-2.0 OR MIT)
import contextlib
import os
import re
import llnl.util.filesystem as fs
import llnl.util.lang
import llnl.util.tty as tty
from spack.util.environment import get_path
from spack.util.module_cmd import module
from .linux_distro import LinuxDistro
@contextlib.contextmanager
def unload_programming_environment():
"""Context manager that unloads Cray Programming Environments."""
env_bu = None
# We rely on the fact that the PrgEnv-* modules set the PE_ENV
# environment variable.
if "PE_ENV" in os.environ:
# Copy environment variables to restore them after the compiler
# detection. We expect that the only thing PrgEnv-* modules do is
# the environment variables modifications.
env_bu = os.environ.copy()
# Get the name of the module from the environment variable.
prg_env = "PrgEnv-" + os.environ["PE_ENV"].lower()
# Unload the PrgEnv-* module. By doing this we intentionally
# provoke errors when the Cray's compiler wrappers are executed
# (Error: A PrgEnv-* modulefile must be loaded.) so they will not
# be detected as valid compilers by the overridden method. We also
# expect that the modules that add the actual compilers' binaries
# into the PATH environment variable (i.e. the following modules:
# 'intel', 'cce', 'gcc', etc.) will also be unloaded since they are
# specified as prerequisites in the PrgEnv-* modulefiles.
module("unload", prg_env)
yield
# Restore the environment.
if env_bu is not None:
os.environ.clear()
os.environ.update(env_bu)
class CrayFrontend(LinuxDistro):
"""Represents OS that runs on login and service nodes of the Cray platform.
It acts as a regular Linux without Cray-specific modules and compiler
wrappers."""
@property
def compiler_search_paths(self):
"""Calls the default function but unloads Cray's programming
environments first.
This prevents from detecting Cray compiler wrappers and avoids
possible false detections.
"""
import spack.compilers
with unload_programming_environment():
search_paths = get_path("PATH")
extract_path_re = re.compile(r"prepend-path[\s]*PATH[\s]*([/\w\.:-]*)")
for compiler_cls in spack.compilers.all_compiler_types():
# Check if the compiler class is supported on Cray
prg_env = getattr(compiler_cls, "PrgEnv", None)
compiler_module = getattr(compiler_cls, "PrgEnv_compiler", None)
if not (prg_env and compiler_module):
continue
# It is supported, check which versions are available
output = module("avail", compiler_cls.PrgEnv_compiler)
version_regex = r"({0})/([\d\.]+[\d]-?[\w]*)".format(compiler_cls.PrgEnv_compiler)
matches = re.findall(version_regex, output)
versions = tuple(version for _, version in matches if "classic" not in version)
# Now inspect the modules and add to paths
msg = "[CRAY FE] Detected FE compiler [name={0}, versions={1}]"
tty.debug(msg.format(compiler_module, versions))
for v in versions:
try:
current_module = compiler_module + "/" + v
out = module("show", current_module)
match = extract_path_re.search(out)
search_paths += match.group(1).split(":")
except Exception as e:
msg = (
"[CRAY FE] An unexpected error occurred while "
"detecting FE compiler [compiler={0}, "
" version={1}, error={2}]"
)
tty.debug(msg.format(compiler_cls.name, v, str(e)))
search_paths = list(llnl.util.lang.dedupe(search_paths))
return fs.search_paths_for_executables(*search_paths)

View File

@@ -143,6 +143,7 @@ def __init__(self):
"12": "monterey",
"13": "ventura",
"14": "sonoma",
"15": "sequoia",
}
version = macos_version()

View File

@@ -199,10 +199,10 @@ def __init__(cls, name, bases, attr_dict):
# assumed to be detectable
if hasattr(cls, "executables") or hasattr(cls, "libraries"):
# Append a tag to each detectable package, so that finding them is faster
if hasattr(cls, "tags"):
getattr(cls, "tags").append(DetectablePackageMeta.TAG)
else:
if not hasattr(cls, "tags"):
setattr(cls, "tags", [DetectablePackageMeta.TAG])
elif DetectablePackageMeta.TAG not in cls.tags:
cls.tags.append(DetectablePackageMeta.TAG)
@classmethod
def platform_executables(cls):
@@ -621,6 +621,10 @@ class PackageBase(WindowsRPath, PackageViewMixin, RedistributionMixin, metaclass
#: By default do not run tests within package's install()
run_tests = False
#: Keep -Werror flags, matches config:flags:keep_werror to override config
# NOTE: should be type Optional[Literal['all', 'specific', 'none']] in 3.8+
keep_werror: Optional[str] = None
#: Most packages are NOT extendable. Set to True if you want extensions.
extendable = False
@@ -926,32 +930,6 @@ def global_license_file(self):
self.global_license_dir, self.name, os.path.basename(self.license_files[0])
)
# NOTE: return type should be Optional[Literal['all', 'specific', 'none']] in
# Python 3.8+, but we still support 3.6.
@property
def keep_werror(self) -> Optional[str]:
"""Keep ``-Werror`` flags, matches ``config:flags:keep_werror`` to override config.
Valid return values are:
* ``"all"``: keep all ``-Werror`` flags.
* ``"specific"``: keep only ``-Werror=specific-warning`` flags.
* ``"none"``: filter out all ``-Werror*`` flags.
* ``None``: respect the user's configuration (``"none"`` by default).
"""
if self.spec.satisfies("%nvhpc@:23.3") or self.spec.satisfies("%pgi"):
# Filtering works by replacing -Werror with -Wno-error, but older nvhpc and
# PGI do not understand -Wno-error, so we disable filtering.
return "all"
elif self.spec.satisfies("%nvhpc@23.4:"):
# newer nvhpc supports -Wno-error but can't disable specific warnings with
# -Wno-error=warning. Skip -Werror=warning, but still filter -Werror.
return "specific"
else:
# use -Werror disablement by default for other compilers
return None
@property
def version(self):
if not self.spec.versions.concrete:
@@ -1141,10 +1119,9 @@ def _make_stage(self):
if not link_format:
link_format = "build-{arch}-{hash:7}"
stage_link = self.spec.format_path(link_format)
return DevelopStage(compute_stage_name(self.spec), dev_path, stage_link)
# To fetch the current version
source_stage = self._make_root_stage(self.fetcher)
source_stage = DevelopStage(compute_stage_name(self.spec), dev_path, stage_link)
else:
source_stage = self._make_root_stage(self.fetcher)
# all_stages is source + resources + patches
all_stages = StageComposite()
@@ -1473,10 +1450,8 @@ def do_fetch(self, mirror_only=False):
return
checksum = spack.config.get("config:checksum")
fetch = self.stage.needs_fetching
if (
checksum
and fetch
and (self.version not in self.versions)
and (not isinstance(self.version, GitVersion))
):
@@ -1583,13 +1558,11 @@ def do_patch(self):
tty.debug("Patching failed last time. Restaging.")
self.stage.restage()
else:
# develop specs/ DIYStages may have patch failures but
# should never be restaged
msg = (
"A patch failure was detected in %s." % self.name
+ " Build errors may occur due to this."
# develop specs may have patch failures but should never be restaged
tty.warn(
f"A patch failure was detected in {self.name}."
" Build errors may occur due to this."
)
tty.warn(msg)
return
# If this file exists, then we already applied all the patches.

View File

@@ -6,6 +6,7 @@
from ._functions import _host, by_name, platforms, prevent_cray_detection, reset
from ._platform import Platform
from .cray import Cray
from .darwin import Darwin
from .freebsd import FreeBSD
from .linux import Linux
@@ -14,6 +15,7 @@
__all__ = [
"Platform",
"Cray",
"Darwin",
"Linux",
"FreeBSD",

View File

@@ -8,6 +8,7 @@
import spack.util.environment
from .cray import Cray
from .darwin import Darwin
from .freebsd import FreeBSD
from .linux import Linux
@@ -15,7 +16,7 @@
from .windows import Windows
#: List of all the platform classes known to Spack
platforms = [Darwin, Linux, Windows, FreeBSD, Test]
platforms = [Cray, Darwin, Linux, Windows, FreeBSD, Test]
@llnl.util.lang.memoized

View File

@@ -2,10 +2,254 @@
# Spack Project Developers. See the top-level COPYRIGHT file for details.
#
# SPDX-License-Identifier: (Apache-2.0 OR MIT)
import os
import os.path
import platform
import re
import archspec.cpu
import llnl.util.tty as tty
from llnl.util.symlink import readlink
import spack.target
import spack.version
from spack.operating_systems.cray_backend import CrayBackend
from spack.operating_systems.cray_frontend import CrayFrontend
from spack.paths import build_env_path
from spack.util.executable import Executable
from spack.util.module_cmd import module
from ._platform import NoPlatformError, Platform
_craype_name_to_target_name = {
"x86-cascadelake": "cascadelake",
"x86-naples": "zen",
"x86-rome": "zen2",
"x86-milan": "zen3",
"x86-skylake": "skylake_avx512",
"mic-knl": "mic_knl",
"interlagos": "bulldozer",
"abudhabi": "piledriver",
}
_ex_craype_dir = "/opt/cray/pe/cpe"
_xc_craype_dir = "/opt/cray/pe/cdt"
def slingshot_network():
return os.path.exists("/opt/cray/pe") and (
os.path.exists("/lib64/libcxi.so") or os.path.exists("/usr/lib64/libcxi.so")
)
def _target_name_from_craype_target_name(name):
return _craype_name_to_target_name.get(name, name)
class Cray(Platform):
priority = 10
def __init__(self):
"""Create a Cray system platform.
Target names should use craype target names but not include the
'craype-' prefix. Uses first viable target from:
self
envars [SPACK_FRONT_END, SPACK_BACK_END]
configuration file "targets.yaml" with keys 'front_end', 'back_end'
scanning /etc/bash/bashrc.local for back_end only
"""
super().__init__("cray")
# Make all craype targets available.
for target in self._avail_targets():
name = _target_name_from_craype_target_name(target)
self.add_target(name, spack.target.Target(name, "craype-%s" % target))
self.back_end = os.environ.get("SPACK_BACK_END", self._default_target_from_env())
self.default = self.back_end
if self.back_end not in self.targets:
# We didn't find a target module for the backend
raise NoPlatformError()
# Setup frontend targets
for name in archspec.cpu.TARGETS:
if name not in self.targets:
self.add_target(name, spack.target.Target(name))
self.front_end = os.environ.get("SPACK_FRONT_END", archspec.cpu.host().name)
if self.front_end not in self.targets:
self.add_target(self.front_end, spack.target.Target(self.front_end))
front_distro = CrayFrontend()
back_distro = CrayBackend()
self.default_os = str(back_distro)
self.back_os = self.default_os
self.front_os = str(front_distro)
self.add_operating_system(self.back_os, back_distro)
if self.front_os != self.back_os:
self.add_operating_system(self.front_os, front_distro)
def setup_platform_environment(self, pkg, env):
"""Change the linker to default dynamic to be more
similar to linux/standard linker behavior
"""
# Unload these modules to prevent any silent linking or unnecessary
# I/O profiling in the case of darshan.
modules_to_unload = ["cray-mpich", "darshan", "cray-libsci", "altd"]
for mod in modules_to_unload:
module("unload", mod)
env.set("CRAYPE_LINK_TYPE", "dynamic")
cray_wrapper_names = os.path.join(build_env_path, "cray")
if os.path.isdir(cray_wrapper_names):
env.prepend_path("PATH", cray_wrapper_names)
env.prepend_path("SPACK_ENV_PATH", cray_wrapper_names)
# Makes spack installed pkg-config work on Crays
env.append_path("PKG_CONFIG_PATH", "/usr/lib64/pkgconfig")
env.append_path("PKG_CONFIG_PATH", "/usr/local/lib64/pkgconfig")
# CRAY_LD_LIBRARY_PATH is used at build time by the cray compiler
# wrappers to augment LD_LIBRARY_PATH. This is to avoid long load
# times at runtime. This behavior is not always respected on cray
# "cluster" systems, so we reproduce it here.
if os.environ.get("CRAY_LD_LIBRARY_PATH"):
env.prepend_path("LD_LIBRARY_PATH", os.environ["CRAY_LD_LIBRARY_PATH"])
@classmethod
def craype_type_and_version(cls):
if os.path.isdir(_ex_craype_dir):
craype_dir = _ex_craype_dir
craype_type = "EX"
elif os.path.isdir(_xc_craype_dir):
craype_dir = _xc_craype_dir
craype_type = "XC"
else:
return (None, None)
# Take the default version from known symlink path
default_path = os.path.join(craype_dir, "default")
if os.path.islink(default_path):
version = spack.version.Version(readlink(default_path))
return (craype_type, version)
# If no default version, sort available versions and return latest
versions_available = [spack.version.Version(v) for v in os.listdir(craype_dir)]
versions_available.sort(reverse=True)
if not versions_available:
return (craype_type, None)
return (craype_type, versions_available[0])
@classmethod
def detect(cls):
"""
Detect whether this system requires CrayPE module support.
Systems with newer CrayPE (21.10 for EX systems, future work for CS and
XC systems) have compilers and MPI wrappers that can be used directly
by path. These systems are considered ``linux`` platforms.
For systems running an older CrayPE, we detect the Cray platform based
on the availability through `module` of the Cray programming
environment. If this environment is available, we can use it to find
compilers, target modules, etc. If the Cray programming environment is
not available via modules, then we will treat it as a standard linux
system, as the Cray compiler wrappers and other components of the Cray
programming environment are irrelevant without module support.
"""
if "opt/cray" not in os.environ.get("MODULEPATH", ""):
return False
craype_type, craype_version = cls.craype_type_and_version()
if craype_type == "XC":
return True
if craype_type == "EX" and craype_version < spack.version.Version("21.10"):
return True
return False
def _default_target_from_env(self):
"""Set and return the default CrayPE target loaded in a clean login
session.
A bash subshell is launched with a wiped environment and the list of
loaded modules is parsed for the first acceptable CrayPE target.
"""
# env -i /bin/bash -lc echo $CRAY_CPU_TARGET 2> /dev/null
if getattr(self, "default", None) is None:
bash = Executable("/bin/bash")
output = bash(
"--norc",
"--noprofile",
"-lc",
"echo $CRAY_CPU_TARGET",
env={"TERM": os.environ.get("TERM", "")},
output=str,
error=os.devnull,
)
default_from_module = "".join(output.split()) # rm all whitespace
if default_from_module:
tty.debug("Found default module:%s" % default_from_module)
return default_from_module
else:
front_end = archspec.cpu.host()
# Look for the frontend architecture or closest ancestor
# available in cray target modules
avail = [_target_name_from_craype_target_name(x) for x in self._avail_targets()]
for front_end_possibility in [front_end] + front_end.ancestors:
if front_end_possibility.name in avail:
tty.debug("using front-end architecture or available ancestor")
return front_end_possibility.name
else:
tty.debug("using platform.machine as default")
return platform.machine()
def _avail_targets(self):
"""Return a list of available CrayPE CPU targets."""
def modules_in_output(output):
"""Returns a list of valid modules parsed from modulecmd output"""
return [i for i in re.split(r"\s\s+|\n", output)]
def target_names_from_modules(modules):
# Craype- module prefixes that are not valid CPU targets.
targets = []
for mod in modules:
if "craype-" in mod:
name = mod[7:]
name = name.split()[0]
_n = name.replace("-", "_") # test for mic-knl/mic_knl
is_target_name = name in archspec.cpu.TARGETS or _n in archspec.cpu.TARGETS
is_cray_target_name = name in _craype_name_to_target_name
if is_target_name or is_cray_target_name:
targets.append(name)
return targets
def modules_from_listdir():
craype_default_path = "/opt/cray/pe/craype/default/modulefiles"
if os.path.isdir(craype_default_path):
return os.listdir(craype_default_path)
return []
if getattr(self, "_craype_targets", None) is None:
strategies = [
lambda: modules_in_output(module("avail", "-t", "craype-")),
modules_from_listdir,
]
for available_craype_modules in strategies:
craype_modules = available_craype_modules()
craype_targets = target_names_from_modules(craype_modules)
if craype_targets:
self._craype_targets = craype_targets
break
else:
# If nothing is found add platform.machine()
# to avoid Spack erroring out
self._craype_targets = [platform.machine()]
return self._craype_targets

View File

@@ -52,7 +52,10 @@
"target": {"type": "string"},
"alias": {"anyOf": [{"type": "string"}, {"type": "null"}]},
"modules": {
"anyOf": [{"type": "string"}, {"type": "null"}, {"type": "array"}]
"anyOf": [
{"type": "null"},
{"type": "array", "items": {"type": "string"}},
]
},
"implicit_rpaths": {
"anyOf": [

View File

@@ -13,6 +13,7 @@
r"\w[\w-]*": {
"type": "object",
"additionalProperties": False,
"required": ["spec"],
"properties": {"spec": {"type": "string"}, "path": {"type": "string"}},
}
},

View File

@@ -116,8 +116,6 @@ class Provenance(enum.IntEnum):
PACKAGE_PY = enum.auto()
# An installed spec
INSTALLED = enum.auto()
# lower provenance for installed git refs so concretizer prefers StandardVersion installs
INSTALLED_GIT_VERSION = enum.auto()
# A runtime injected from another package (e.g. a compiler)
RUNTIME = enum.auto()
@@ -846,8 +844,6 @@ def solve(self, setup, specs, reuse=None, output=None, control=None, allow_depre
parent_dir = os.path.dirname(__file__)
self.control.load(os.path.join(parent_dir, "concretize.lp"))
self.control.load(os.path.join(parent_dir, "heuristic.lp"))
if spack.config.CONFIG.get("concretizer:duplicates:strategy", "none") != "none":
self.control.load(os.path.join(parent_dir, "heuristic_separate.lp"))
self.control.load(os.path.join(parent_dir, "display.lp"))
if not setup.concretize_everything:
self.control.load(os.path.join(parent_dir, "when_possible.lp"))
@@ -1437,16 +1433,14 @@ def condition(
# caller, we won't emit partial facts.
condition_id = next(self._id_counter)
self.gen.fact(fn.pkg_fact(required_spec.name, fn.condition(condition_id)))
self.gen.fact(fn.condition_reason(condition_id, msg))
trigger_id = self._get_condition_id(
required_spec, cache=self._trigger_cache, body=True, transform=transform_required
)
self.gen.fact(fn.pkg_fact(required_spec.name, fn.condition(condition_id)))
self.gen.fact(fn.condition_reason(condition_id, msg))
self.gen.fact(
fn.pkg_fact(required_spec.name, fn.condition_trigger(condition_id, trigger_id))
)
if not imposed_spec:
return condition_id
@@ -1695,19 +1689,43 @@ def external_packages(self):
spack.spec.parse_with_version_concrete(x["spec"]) for x in externals
]
external_specs = []
selected_externals = set()
if spec_filters:
for current_filter in spec_filters:
current_filter.factory = lambda: candidate_specs
external_specs.extend(current_filter.selected_specs())
else:
external_specs.extend(candidate_specs)
selected_externals.update(current_filter.selected_specs())
# Emit facts for externals specs. Note that "local_idx" is the index of the spec
# in packages:<pkg_name>:externals. This means:
#
# packages:<pkg_name>:externals[local_idx].spec == spec
external_versions = []
for local_idx, spec in enumerate(candidate_specs):
msg = f"{spec.name} available as external when satisfying {spec}"
if spec_filters and spec not in selected_externals:
continue
if not spec.versions.concrete:
warnings.warn(f"cannot use the external spec {spec}: needs a concrete version")
continue
def external_imposition(input_spec, requirements):
return requirements + [
fn.attr("external_conditions_hold", input_spec.name, local_idx)
]
try:
self.condition(spec, spec, msg=msg, transform_imposed=external_imposition)
except (spack.error.SpecError, RuntimeError) as e:
warnings.warn(f"while setting up external spec {spec}: {e}")
continue
external_versions.append((spec.version, local_idx))
self.possible_versions[spec.name].add(spec.version)
self.gen.newline()
# Order the external versions to prefer more recent versions
# even if specs in packages.yaml are not ordered that way
external_versions = [
(x.version, external_id) for external_id, x in enumerate(external_specs)
]
external_versions = [
(v, idx, external_id)
for idx, (v, external_id) in enumerate(sorted(external_versions, reverse=True))
@@ -1717,19 +1735,6 @@ def external_packages(self):
DeclaredVersion(version=version, idx=idx, origin=Provenance.EXTERNAL)
)
# Declare external conditions with a local index into packages.yaml
for local_idx, spec in enumerate(external_specs):
msg = "%s available as external when satisfying %s" % (spec.name, spec)
def external_imposition(input_spec, requirements):
return requirements + [
fn.attr("external_conditions_hold", input_spec.name, local_idx)
]
self.condition(spec, spec, msg=msg, transform_imposed=external_imposition)
self.possible_versions[spec.name].add(spec.version)
self.gen.newline()
self.trigger_rules()
self.effect_rules()
@@ -1882,11 +1887,8 @@ def _spec_clauses(
)
clauses.append(f.variant_value(spec.name, vname, value))
if variant.propagate:
clauses.append(
f.variant_propagation_candidate(spec.name, vname, value, spec.name)
)
clauses.append(f.propagate(spec.name, fn.variant_value(vname, value)))
# Tell the concretizer that this is a possible value for the
# variant, to account for things like int/str values where we
@@ -2074,7 +2076,7 @@ def define_ad_hoc_versions_from_specs(
# best possible, so they're guaranteed to be used preferentially.
version = s.versions.concrete
if version is None or (any((v == version) for v in self.possible_versions[s.name])):
if version is None or any(v == version for v in self.possible_versions[s.name]):
continue
if require_checksum and not _is_checksummed_git_version(version):
@@ -2388,16 +2390,9 @@ def concrete_specs(self):
# - Add OS to possible OS's
for dep in spec.traverse():
self.possible_versions[dep.name].add(dep.version)
if isinstance(dep.version, vn.GitVersion):
self.declared_versions[dep.name].append(
DeclaredVersion(
version=dep.version, idx=0, origin=Provenance.INSTALLED_GIT_VERSION
)
)
else:
self.declared_versions[dep.name].append(
DeclaredVersion(version=dep.version, idx=0, origin=Provenance.INSTALLED)
)
self.declared_versions[dep.name].append(
DeclaredVersion(version=dep.version, idx=0, origin=Provenance.INSTALLED)
)
self.possible_oses.add(dep.os)
def define_concrete_input_specs(self, specs, possible):
@@ -2449,7 +2444,7 @@ def setup(
if using_libc_compatibility():
for libc in self.libcs:
self.gen.fact(fn.host_libc(libc.name, libc.version))
self.gen.fact(fn.allowed_libc(libc.name, libc.version))
if not allow_deprecated:
self.gen.fact(fn.deprecated_versions_not_allowed())
@@ -2748,7 +2743,7 @@ class _Head:
node_flag = fn.attr("node_flag_set")
node_flag_source = fn.attr("node_flag_source")
node_flag_propagate = fn.attr("node_flag_propagate")
variant_propagation_candidate = fn.attr("variant_propagation_candidate")
propagate = fn.attr("propagate")
class _Body:
@@ -2765,7 +2760,7 @@ class _Body:
node_flag = fn.attr("node_flag")
node_flag_source = fn.attr("node_flag_source")
node_flag_propagate = fn.attr("node_flag_propagate")
variant_propagation_candidate = fn.attr("variant_propagation_candidate")
propagate = fn.attr("propagate")
class ProblemInstanceBuilder:
@@ -3239,6 +3234,39 @@ def requires(self, impose: str, *, when: str):
self.runtime_conditions.add((imposed_spec, when_spec))
self.reset()
def propagate(self, constraint_str: str, *, when: str):
msg = "the 'propagate' method can be called only with pkg('*')"
assert self.current_package == "*", msg
when_spec = spack.spec.Spec(when)
assert when_spec.name is None, "only anonymous when specs are accepted"
placeholder = "XXX"
node_variable = "node(ID, Package)"
when_spec.name = placeholder
body_clauses = self._setup.spec_clauses(when_spec, body=True)
body_str = (
f" {f',{os.linesep} '.join(str(x) for x in body_clauses)},\n"
f" not external({node_variable}),\n"
f" not runtime(Package)"
).replace(f'"{placeholder}"', f"{node_variable}")
constraint_spec = spack.spec.Spec(constraint_str)
assert constraint_spec.name is None, "only anonymous constraint specs are accepted"
constraint_spec.name = placeholder
constraint_clauses = self._setup.spec_clauses(constraint_spec, body=False)
for clause in constraint_clauses:
if clause.args[0] == "node_compiler_version_satisfies":
self._setup.compiler_version_constraints.add(constraint_spec.compiler)
args = f'"{constraint_spec.compiler.name}", "{constraint_spec.compiler.versions}"'
head_str = f"propagate({node_variable}, node_compiler_version_satisfies({args}))"
rule = f"{head_str} :-\n{body_str}.\n\n"
self.rules.append(rule)
self.reset()
def consume_facts(self):
"""Consume the facts collected by this object, and emits rules and
facts for the runtimes.
@@ -3808,6 +3836,12 @@ class Solver:
def __init__(self):
self.driver = PyclingoDriver()
self.selector = ReusableSpecsSelector(configuration=spack.config.CONFIG)
if spack.platforms.host().name == "cray":
msg = (
"The Cray platform, i.e. 'platform=cray', will be removed in Spack v0.23. "
"All Cray machines will be then detected as 'platform=linux'."
)
warnings.warn(msg)
@staticmethod
def _check_input_and_extract_concrete_specs(specs):

View File

@@ -256,7 +256,6 @@ possible_version_weight(node(ID, Package), Weight)
:- attr("version", node(ID, Package), Version),
version_weight(node(ID, Package), Weight),
not pkg_fact(Package, version_declared(Version, Weight, "installed")),
not pkg_fact(Package, version_declared(Version, Weight, "installed_git_version")),
not build(node(ID, Package)),
internal_error("Build version weight used for reused package").
@@ -812,37 +811,6 @@ node_has_variant(node(ID, Package), Variant) :-
pkg_fact(Package, variant(Variant)),
attr("node", node(ID, Package)).
% Variant propagation is forwarded to dependencies
attr("variant_propagation_candidate", PackageNode, Variant, Value, Source) :-
attr("node", PackageNode),
depends_on(ParentNode, PackageNode),
attr("variant_value", node(_, Source), Variant, Value),
attr("variant_propagation_candidate", ParentNode, Variant, _, Source).
% If the node is a candidate, and it has the variant and value,
% then those variant and value should be propagated
attr("variant_propagate", node(ID, Package), Variant, Value, Source) :-
attr("variant_propagation_candidate", node(ID, Package), Variant, Value, Source),
node_has_variant(node(ID, Package), Variant),
pkg_fact(Package, variant_possible_value(Variant, Value)),
not attr("variant_set", node(ID, Package), Variant).
% Propagate the value, if there is the corresponding attribute
attr("variant_value", PackageNode, Variant, Value) :- attr("variant_propagate", PackageNode, Variant, Value, _).
% If a variant is propagated, we cannot have extraneous values (this is for multi valued variants)
variant_is_propagated(PackageNode, Variant) :- attr("variant_propagate", PackageNode, Variant, _, _).
:- variant_is_propagated(PackageNode, Variant),
attr("variant_value", PackageNode, Variant, Value),
not attr("variant_propagate", PackageNode, Variant, Value, _).
% Cannot receive different values from different sources on the same variant
error(100, "{0} and {1} cannot both propagate variant '{2}' to package {3} with values '{4}' and '{5}'", Source1, Source2, Variant, Package, Value1, Value2) :-
attr("variant_propagate", node(X, Package), Variant, Value1, Source1),
attr("variant_propagate", node(X, Package), Variant, Value2, Source2),
node_has_variant(node(X, Package), Variant),
Value1 < Value2, Source1 < Source2.
% a variant cannot be set if it is not a variant on the package
error(100, "Cannot set variant '{0}' for package '{1}' because the variant condition cannot be satisfied for the given spec", Variant, Package)
:- attr("variant_set", node(X, Package), Variant),
@@ -920,7 +888,7 @@ variant_not_default(node(ID, Package), Variant, Value)
% variants set explicitly on the CLI don't count as non-default
not attr("variant_set", node(ID, Package), Variant, Value),
% variant values forced by propagation don't count as non-default
not attr("variant_propagate", node(ID, Package), Variant, Value, _),
not propagate(node(ID, Package), variant_value(Variant, Value)),
% variants set on externals that we could use don't count as non-default
% this makes spack prefer to use an external over rebuilding with the
% default configuration
@@ -933,7 +901,7 @@ variant_default_not_used(node(ID, Package), Variant, Value)
:- variant_default_value(Package, Variant, Value),
node_has_variant(node(ID, Package), Variant),
not attr("variant_value", node(ID, Package), Variant, Value),
not attr("variant_propagate", node(ID, Package), Variant, _, _),
not propagate(node(ID, Package), variant_value(Variant, _)),
attr("node", node(ID, Package)).
% The variant is set in an external spec
@@ -990,6 +958,67 @@ pkg_fact(Package, variant_single_value("dev_path"))
#defined variant_default_value/3.
#defined variant_default_value_from_packages_yaml/3.
%-----------------------------------------------------------------------------
% Propagation semantics
%-----------------------------------------------------------------------------
% Propagation roots have a corresponding attr("propagate", ...)
propagate(RootNode, PropagatedAttribute) :- attr("propagate", RootNode, PropagatedAttribute).
% Propagate an attribute along edges to child nodes
propagate(ChildNode, PropagatedAttribute) :-
propagate(ParentNode, PropagatedAttribute),
depends_on(ParentNode, ChildNode).
%-----------------------------------------------------------------------------
% Activation of propagated values
%-----------------------------------------------------------------------------
%----
% Variants
%----
% If a variant is propagated, and can be accepted, set its value
attr("variant_value", node(ID, Package), Variant, Value) :-
propagate(node(ID, Package), variant_value(Variant, Value)),
node_has_variant(node(ID, Package), Variant),
pkg_fact(Package, variant_possible_value(Variant, Value)),
not attr("variant_set", node(ID, Package), Variant).
% If a variant is propagated, we cannot have extraneous values
variant_is_propagated(PackageNode, Variant) :-
attr("variant_value", PackageNode, Variant, Value),
propagate(PackageNode, variant_value(Variant, Value)),
not attr("variant_set", PackageNode, Variant).
:- variant_is_propagated(PackageNode, Variant),
attr("variant_value", PackageNode, Variant, Value),
not propagate(PackageNode, variant_value(Variant, Value)).
%----
% Compiler constraints
%----
attr("node_compiler_version_satisfies", node(ID, Package), Compiler, Version) :-
propagate(node(ID, Package), node_compiler_version_satisfies(Compiler, Version)),
node_compiler(node(ID, Package), CompilerID),
compiler_name(CompilerID, Compiler),
not runtime(Package),
not external(Package).
%-----------------------------------------------------------------------------
% Runtimes
%-----------------------------------------------------------------------------
% Check whether the DAG has any built package
has_built_packages() :- build(X), not external(X).
% If we build packages, the runtime nodes must use an available compiler
1 { node_compiler(PackageNode, CompilerID) : build(PackageNode), not external(PackageNode) } :-
has_built_packages(),
runtime(RuntimePackage),
node_compiler(node(_, RuntimePackage), CompilerID).
%-----------------------------------------------------------------------------
% Platform semantics
%-----------------------------------------------------------------------------
@@ -1091,10 +1120,18 @@ attr("node_target", PackageNode, Target)
:- attr("node", PackageNode), attr("node_target_set", PackageNode, Target).
% each node has the weight of its assigned target
node_target_weight(node(ID, Package), Weight)
:- attr("node", node(ID, Package)),
attr("node_target", node(ID, Package), Target),
target_weight(Target, Weight).
target_weight(Target, 0)
:- attr("node", PackageNode),
attr("node_target", PackageNode, Target),
attr("node_target_set", PackageNode, Target).
node_target_weight(PackageNode, MinWeight)
:- attr("node", PackageNode),
attr("node_target", PackageNode, Target),
target(Target),
MinWeight = #min { Weight : target_weight(Target, Weight) }.
:- attr("node_target", PackageNode, Target), not node_target_weight(PackageNode, _).
% compatibility rules for targets among nodes
node_target_match(ParentNode, DependencyNode)
@@ -1156,12 +1193,12 @@ error(10, "No valid compiler for {0} satisfies '%{1}'", Package, Compiler)
% If the compiler of a node must satisfy a constraint, then its version
% must be chosen among the ones that satisfy said constraint
error(100, "No valid version for '{0}' compiler '{1}' satisfies '@{2}'", Package, Compiler, Constraint)
error(100, "Package {0} cannot satisfy '%{1}@{2}'", Package, Compiler, Constraint)
:- attr("node", node(X, Package)),
attr("node_compiler_version_satisfies", node(X, Package), Compiler, Constraint),
not compiler_version_satisfies(Compiler, Constraint, _).
not compiler_version_satisfies(Compiler, Constraint, _).
error(100, "No valid version for '{0}' compiler '{1}' satisfies '@{2}'", Package, Compiler, Constraint)
error(100, "Package {0} cannot satisfy '%{1}@{2}'", Package, Compiler, Constraint)
:- attr("node", node(X, Package)),
attr("node_compiler_version_satisfies", node(X, Package), Compiler, Constraint),
not compiler_version_satisfies(Compiler, Constraint, ID),
@@ -1497,7 +1534,7 @@ opt_criterion(45, "preferred providers (non-roots)").
}.
% Try to minimize the number of compiler mismatches in the DAG.
opt_criterion(40, "compiler mismatches that are not from CLI").
opt_criterion(40, "compiler mismatches that are not required").
#minimize{ 0@240: #true }.
#minimize{ 0@40: #true }.
#minimize{
@@ -1507,7 +1544,7 @@ opt_criterion(40, "compiler mismatches that are not from CLI").
not runtime(Dependency)
}.
opt_criterion(39, "compiler mismatches that are not from CLI").
opt_criterion(39, "compiler mismatches that are required").
#minimize{ 0@239: #true }.
#minimize{ 0@39: #true }.
#minimize{

View File

@@ -4,21 +4,35 @@
% SPDX-License-Identifier: (Apache-2.0 OR MIT)
%=============================================================================
% Heuristic to speed-up solves (node with ID 0)
% Heuristic to speed-up solves
%=============================================================================
% No duplicates by default (most of them will be true)
#heuristic attr("node", node(PackageID, Package)). [100, init]
#heuristic attr("node", node(PackageID, Package)). [ 2, factor]
#heuristic attr("virtual_node", node(VirtualID, Virtual)). [100, init]
#heuristic attr("node", node(1..X-1, Package)) : max_dupes(Package, X), not virtual(Package), X > 1. [-1, sign]
#heuristic attr("virtual_node", node(1..X-1, Package)) : max_dupes(Package, X), virtual(Package) , X > 1. [-1, sign]
%-----------------
% Domain heuristic
%-----------------
% Pick preferred version
#heuristic attr("version", node(PackageID, Package), Version) : pkg_fact(Package, version_declared(Version, Weight)), attr("node", node(PackageID, Package)). [40, init]
#heuristic version_weight(node(PackageID, Package), 0) : pkg_fact(Package, version_declared(Version, 0 )), attr("node", node(PackageID, Package)). [ 1, sign]
#heuristic attr("version", node(PackageID, Package), Version) : pkg_fact(Package, version_declared(Version, 0 )), attr("node", node(PackageID, Package)). [ 1, sign]
#heuristic attr("version", node(PackageID, Package), Version) : pkg_fact(Package, version_declared(Version, Weight)), attr("node", node(PackageID, Package)), Weight > 0. [-1, sign]
% Root node
#heuristic attr("version", node(0, Package), Version) : pkg_fact(Package, version_declared(Version, 0)), attr("root", node(0, Package)). [35, true]
#heuristic version_weight(node(0, Package), 0) : pkg_fact(Package, version_declared(Version, 0)), attr("root", node(0, Package)). [35, true]
#heuristic attr("variant_value", node(0, Package), Variant, Value) : variant_default_value(Package, Variant, Value), attr("root", node(0, Package)). [35, true]
#heuristic attr("node_target", node(0, Package), Target) : target_weight(Target, 0), attr("root", node(0, Package)). [35, true]
#heuristic node_target_weight(node(0, Package), 0) : attr("root", node(0, Package)). [35, true]
#heuristic node_compiler(node(0, Package), CompilerID) : compiler_weight(ID, 0), compiler_id(ID), attr("root", node(0, Package)). [35, true]
% Use default variants
#heuristic attr("variant_value", node(PackageID, Package), Variant, Value) : variant_default_value(Package, Variant, Value), attr("node", node(PackageID, Package)). [40, true]
#heuristic attr("variant_value", node(PackageID, Package), Variant, Value) : not variant_default_value(Package, Variant, Value), attr("node", node(PackageID, Package)). [40, false]
% Providers
#heuristic attr("node", node(0, Package)) : default_provider_preference(Virtual, Package, 0), possible_in_link_run(Package). [30, true]
% Use default operating system and platform
#heuristic attr("node_os", node(PackageID, Package), OS) : os(OS, 0), attr("root", node(PackageID, Package)). [40, true]
#heuristic attr("node_platform", node(PackageID, Package), Platform) : allowed_platform(Platform), attr("root", node(PackageID, Package)). [40, true]
% Use default targets
#heuristic attr("node_target", node(PackageID, Package), Target) : target_weight(Target, Weight), attr("node", node(PackageID, Package)). [30, init]
#heuristic attr("node_target", node(PackageID, Package), Target) : target_weight(Target, Weight), attr("node", node(PackageID, Package)). [ 2, factor]
#heuristic attr("node_target", node(PackageID, Package), Target) : target_weight(Target, 0), attr("node", node(PackageID, Package)). [ 1, sign]
#heuristic attr("node_target", node(PackageID, Package), Target) : target_weight(Target, Weight), attr("node", node(PackageID, Package)), Weight > 0. [-1, sign]
% Use the default compilers
#heuristic node_compiler(node(PackageID, Package), ID) : compiler_weight(ID, 0), compiler_id(ID), attr("node", node(PackageID, Package)). [30, init]

View File

@@ -1,24 +0,0 @@
% Copyright 2013-2024 Lawrence Livermore National Security, LLC and other
% Spack Project Developers. See the top-level COPYRIGHT file for details.
%
% SPDX-License-Identifier: (Apache-2.0 OR MIT)
%=============================================================================
% Heuristic to speed-up solves (node with ID > 0)
%=============================================================================
% node(ID, _)
#heuristic attr("version", node(ID, Package), Version) : pkg_fact(Package, version_declared(Version, 0)), attr("node", node(ID, Package)), ID > 0. [25-5*ID, true]
#heuristic version_weight(node(ID, Package), 0) : pkg_fact(Package, version_declared(Version, 0)), attr("node", node(ID, Package)), ID > 0. [25-5*ID, true]
#heuristic attr("variant_value", node(ID, Package), Variant, Value) : variant_default_value(Package, Variant, Value), attr("node", node(ID, Package)), ID > 0. [25-5*ID, true]
#heuristic attr("node_target", node(ID, Package), Target) : pkg_fact(Package, target_weight(Target, 0)), attr("node", node(ID, Package)), ID > 0. [25-5*ID, true]
#heuristic node_target_weight(node(ID, Package), 0) : attr("node", node(ID, Package)), ID > 0. [25-5*ID, true]
#heuristic node_compiler(node(ID, Package), CompilerID) : compiler_weight(CompilerID, 0), compiler_id(CompilerID), attr("node", node(ID, Package)), ID > 0. [25-5*ID, true]
% node(ID, _), split build dependencies
#heuristic attr("version", node(ID, Package), Version) : pkg_fact(Package, version_declared(Version, 0)), attr("node", node(ID, Package)), multiple_unification_sets(Package), ID > 0. [25, true]
#heuristic version_weight(node(ID, Package), 0) : pkg_fact(Package, version_declared(Version, 0)), attr("node", node(ID, Package)), multiple_unification_sets(Package), ID > 0. [25, true]
#heuristic attr("variant_value", node(ID, Package), Variant, Value) : variant_default_value(Package, Variant, Value), attr("node", node(ID, Package)), multiple_unification_sets(Package), ID > 0. [25, true]
#heuristic attr("node_target", node(ID, Package), Target) : pkg_fact(Package, target_weight(Target, 0)), attr("node", node(ID, Package)), multiple_unification_sets(Package), ID > 0. [25, true]
#heuristic node_target_weight(node(ID, Package), 0) : attr("node", node(ID, Package)), multiple_unification_sets(Package), ID > 0. [25, true]
#heuristic node_compiler(node(ID, Package), CompilerID) : compiler_weight(CompilerID, 0), compiler_id(CompilerID), attr("node", node(ID, Package)), multiple_unification_sets(Package), ID > 0. [25, true]

View File

@@ -18,26 +18,15 @@ error(100, "Cannot reuse {0} since we cannot determine libc compatibility", Reus
ReusedPackage != LibcPackage,
not attr("compatible_libc", node(R, ReusedPackage), LibcPackage, LibcVersion).
% Check whether the DAG has any built package
has_built_packages() :- build(X), not external(X).
% A libc is needed in the DAG
:- has_built_packages(), not provider(_, node(0, "libc")).
% Non-libc reused specs must be host libc compatible. In case we build packages, we get a
% host compatible libc provider from other rules. If nothing is built, there is no libc provider,
% since it's pruned from reusable specs, meaning we have to explicitly impose reused specs are host
% compatible.
:- attr("hash", node(R, ReusedPackage), Hash),
not provider(node(R, ReusedPackage), node(0, "libc")),
not attr("compatible_libc", node(R, ReusedPackage), _, _).
% The libc provider must be one that a compiler can target
% The libc must be chosen among available ones
:- has_built_packages(),
provider(node(X, LibcPackage), node(0, "libc")),
attr("node", node(X, LibcPackage)),
attr("version", node(X, LibcPackage), LibcVersion),
not host_libc(LibcPackage, LibcVersion).
not allowed_libc(LibcPackage, LibcVersion).
% A built node must depend on libc
:- build(PackageNode),

View File

@@ -12,6 +12,7 @@
%=============================================================================
% macOS
os_compatible("sequoia", "sonoma").
os_compatible("sonoma", "ventura").
os_compatible("ventura", "monterey").
os_compatible("monterey", "bigsur").

View File

@@ -1287,102 +1287,6 @@ def copy(self, *args, **kwargs):
return self.wrapped_obj.copy(*args, **kwargs)
def tree(
specs: List["spack.spec.Spec"],
*,
color: Optional[bool] = None,
depth: bool = False,
hashes: bool = False,
hashlen: Optional[int] = None,
cover: str = "nodes",
indent: int = 0,
format: str = DEFAULT_FORMAT,
deptypes: Union[Tuple[str, ...], str] = "all",
show_types: bool = False,
depth_first: bool = False,
recurse_dependencies: bool = True,
status_fn: Optional[Callable[["Spec"], InstallStatus]] = None,
prefix: Optional[Callable[["Spec"], str]] = None,
key=id,
) -> str:
"""Prints out specs and their dependencies, tree-formatted with indentation.
Status function may either output a boolean or an InstallStatus
Args:
color: if True, always colorize the tree. If False, don't colorize the tree. If None,
use the default from llnl.tty.color
depth: print the depth from the root
hashes: if True, print the hash of each node
hashlen: length of the hash to be printed
cover: either "nodes" or "edges"
indent: extra indentation for the tree being printed
format: format to be used to print each node
deptypes: dependency types to be represented in the tree
show_types: if True, show the (merged) dependency type of a node
depth_first: if True, traverse the DAG depth first when representing it as a tree
recurse_dependencies: if True, recurse on dependencies
status_fn: optional callable that takes a node as an argument and return its
installation status
prefix: optional callable that takes a node as an argument and return its
installation prefix
"""
out = ""
if color is None:
color = clr.get_color_when()
for d, dep_spec in traverse.traverse_tree(
sorted(specs), cover=cover, deptype=deptypes, depth_first=depth_first, key=key
):
node = dep_spec.spec
if prefix is not None:
out += prefix(node)
out += " " * indent
if depth:
out += "%-4d" % d
if status_fn:
status = status_fn(node)
if status in list(InstallStatus):
out += clr.colorize(status.value, color=color)
elif status:
out += clr.colorize("@g{[+]} ", color=color)
else:
out += clr.colorize("@r{[-]} ", color=color)
if hashes:
out += clr.colorize("@K{%s} ", color=color) % node.dag_hash(hashlen)
if show_types:
if cover == "nodes":
# when only covering nodes, we merge dependency types
# from all dependents before showing them.
depflag = 0
for ds in node.edges_from_dependents():
depflag |= ds.depflag
else:
# when covering edges or paths, we show dependency
# types only for the edge through which we visited
depflag = dep_spec.depflag
type_chars = dt.flag_to_chars(depflag)
out += "[%s] " % type_chars
out += " " * d
if d > 0:
out += "^"
out += node.format(format, color=color) + "\n"
# Check if we wanted just the first line
if not recurse_dependencies:
break
return out
@lang.lazy_lexicographic_ordering(set_hash=False)
class Spec:
#: Cache for spec's prefix, computed lazily in the corresponding property
@@ -2141,6 +2045,18 @@ def to_node_dict(self, hash=ht.dag_hash):
if params:
d["parameters"] = params
if params and not self.concrete:
flag_names = [
name
for name, flags in self.compiler_flags.items()
if any(x.propagate for x in flags)
]
d["propagate"] = sorted(
itertools.chain(
[v.name for v in self.variants.values() if v.propagate], flag_names
)
)
if self.external:
d["external"] = syaml.syaml_dict(
[
@@ -2313,16 +2229,10 @@ def node_dict_with_hashes(self, hash=ht.dag_hash):
spec is concrete, the full hash is added as well. If 'build' is in
the hash_type, the build hash is also added."""
node = self.to_node_dict(hash)
# All specs have at least a DAG hash
node[ht.dag_hash.name] = self.dag_hash()
# dag_hash is lazily computed -- but if we write a spec out, we want it
# to be included. This is effectively the last chance we get to compute
# it accurately.
if self.concrete:
# all specs have at least a DAG hash
node[ht.dag_hash.name] = self.dag_hash()
else:
if not self.concrete:
node["concrete"] = False
# we can also give them other hash types if we want
@@ -2912,7 +2822,9 @@ def _old_concretize(self, tests=False, deprecation_warning=True):
# Check if we can produce an optimized binary (will throw if
# there are declared inconsistencies)
self.architecture.target.optimization_flags(self.compiler)
# No need on platform=cray because of the targeting modules
if not self.satisfies("platform=cray"):
self.architecture.target.optimization_flags(self.compiler)
def _patches_assigned(self):
"""Whether patches have been assigned to this spec by the concretizer."""
@@ -4258,29 +4170,21 @@ def __getitem__(self, name: str):
csv = query_parameters.pop().strip()
query_parameters = re.split(r"\s*,\s*", csv)
# In some cases a package appears multiple times in the same DAG for *distinct*
# specs. For example, a build-type dependency may itself depend on a package
# the current spec depends on, but their specs may differ. Therefore we iterate
# in an order here that prioritizes the build, test and runtime dependencies;
# only when we don't find the package do we consider the full DAG.
order = lambda: itertools.chain(
self.traverse(deptype="link"),
self.dependencies(deptype=dt.BUILD | dt.RUN | dt.TEST),
self.traverse(), # fall back to a full search
self.traverse_edges(deptype=dt.LINK, order="breadth", cover="edges"),
self.edges_to_dependencies(depflag=dt.BUILD | dt.RUN | dt.TEST),
self.traverse_edges(deptype=dt.ALL, order="breadth", cover="edges"),
)
# Consider runtime dependencies and direct build/test deps before transitive dependencies,
# and prefer matches closest to the root.
try:
child: Spec = next(
itertools.chain(
# Regular specs
(x for x in order() if x.name == name),
(
x
for x in order()
if (not x.virtual)
and any(name in edge.virtuals for edge in x.edges_from_dependents())
),
(x for x in order() if (not x.virtual) and x.package.provides(name)),
e.spec
for e in itertools.chain(
(e for e in order() if e.spec.name == name or name in e.virtuals),
# for historical reasons
(e for e in order() if e.spec.concrete and e.spec.package.provides(name)),
)
)
except StopIteration:
@@ -4522,9 +4426,12 @@ def format_attribute(match_object: Match) -> str:
if part.startswith("_"):
raise SpecFormatStringError("Attempted to format private attribute")
else:
if part == "variants" and isinstance(current, vt.VariantMap):
if isinstance(current, vt.VariantMap):
# subscript instead of getattr for variant names
current = current[part]
try:
current = current[part]
except KeyError:
raise SpecFormatStringError(f"Variant '{part}' does not exist")
else:
# aliases
if part == "arch":
@@ -4700,14 +4607,13 @@ def tree(
recurse_dependencies: bool = True,
status_fn: Optional[Callable[["Spec"], InstallStatus]] = None,
prefix: Optional[Callable[["Spec"], str]] = None,
key=id,
) -> str:
"""Prints out this spec and its dependencies, tree-formatted with indentation.
"""Prints out this spec and its dependencies, tree-formatted
with indentation.
See multi-spec ``spack.spec.tree()`` function for details.
Status function may either output a boolean or an InstallStatus
Args:
specs: List of specs to format.
color: if True, always colorize the tree. If False, don't colorize the tree. If None,
use the default from llnl.tty.color
depth: print the depth from the root
@@ -4725,23 +4631,60 @@ def tree(
prefix: optional callable that takes a node as an argument and return its
installation prefix
"""
return tree(
[self],
color=color,
depth=depth,
hashes=hashes,
hashlen=hashlen,
cover=cover,
indent=indent,
format=format,
deptypes=deptypes,
show_types=show_types,
depth_first=depth_first,
recurse_dependencies=recurse_dependencies,
status_fn=status_fn,
prefix=prefix,
key=key,
)
out = ""
if color is None:
color = clr.get_color_when()
for d, dep_spec in traverse.traverse_tree(
[self], cover=cover, deptype=deptypes, depth_first=depth_first
):
node = dep_spec.spec
if prefix is not None:
out += prefix(node)
out += " " * indent
if depth:
out += "%-4d" % d
if status_fn:
status = status_fn(node)
if status in list(InstallStatus):
out += clr.colorize(status.value, color=color)
elif status:
out += clr.colorize("@g{[+]} ", color=color)
else:
out += clr.colorize("@r{[-]} ", color=color)
if hashes:
out += clr.colorize("@K{%s} ", color=color) % node.dag_hash(hashlen)
if show_types:
if cover == "nodes":
# when only covering nodes, we merge dependency types
# from all dependents before showing them.
depflag = 0
for ds in node.edges_from_dependents():
depflag |= ds.depflag
else:
# when covering edges or paths, we show dependency
# types only for the edge through which we visited
depflag = dep_spec.depflag
type_chars = dt.flag_to_chars(depflag)
out += "[%s] " % type_chars
out += " " * d
if d > 0:
out += "^"
out += node.format(format, color=color) + "\n"
# Check if we wanted just the first line
if not recurse_dependencies:
break
return out
def __repr__(self):
return str(self)
@@ -5062,13 +5005,17 @@ def from_node_dict(cls, node):
else:
spec.compiler = None
propagated_names = node.get("propagate", [])
for name, values in node.get("parameters", {}).items():
propagate = name in propagated_names
if name in _valid_compiler_flags:
spec.compiler_flags[name] = []
for val in values:
spec.compiler_flags.add_flag(name, val, False)
spec.compiler_flags.add_flag(name, val, propagate)
else:
spec.variants[name] = vt.MultiValuedVariant.from_node_dict(name, values)
spec.variants[name] = vt.MultiValuedVariant.from_node_dict(
name, values, propagate=propagate
)
spec.external_path = None
spec.external_modules = None

View File

@@ -212,7 +212,10 @@ def _expand_matrix_constraints(matrix_config):
results = []
for combo in itertools.product(*expanded_rows):
# Construct a combined spec to test against excludes
flat_combo = [Spec(constraint) for constraints in combo for constraint in constraints]
flat_combo = [constraint for constraint_list in combo for constraint in constraint_list]
# Resolve abstract hashes so we can exclude by their concrete properties
flat_combo = [Spec(x).lookup_hash() for x in flat_combo]
test_spec = flat_combo[0].copy()
for constraint in flat_combo[1:]:
@@ -228,9 +231,7 @@ def _expand_matrix_constraints(matrix_config):
spack.variant.substitute_abstract_variants(test_spec)
except spack.variant.UnknownVariantError:
pass
# Resolve abstract hashes for exclusion criteria
if any(test_spec.lookup_hash().satisfies(x) for x in excludes):
if any(test_spec.satisfies(x) for x in excludes):
continue
if sigil:

View File

@@ -13,7 +13,7 @@
import stat
import sys
import tempfile
from typing import Callable, Dict, Iterable, Optional, Set
from typing import Callable, Dict, Iterable, List, Optional, Set
import llnl.string
import llnl.util.lang
@@ -40,6 +40,7 @@
import spack.resource
import spack.spec
import spack.stage
import spack.util.crypto
import spack.util.lock
import spack.util.path as sup
import spack.util.pattern as pattern
@@ -346,8 +347,6 @@ class Stage(LockableStagingDir):
similar, and are intended to persist for only one run of spack.
"""
#: Most staging is managed by Spack. DIYStage is one exception.
needs_fetching = True
requires_patch_success = True
def __init__(
@@ -536,32 +535,29 @@ def generate_fetchers():
for fetcher in dynamic_fetchers:
yield fetcher
def print_errors(errors):
for msg in errors:
tty.debug(msg)
errors = []
errors: List[str] = []
for fetcher in generate_fetchers():
try:
fetcher.stage = self
self.fetcher = fetcher
self.fetcher.fetch()
break
except spack.fetch_strategy.NoCacheError:
except fs.NoCacheError:
# Don't bother reporting when something is not cached.
continue
except fs.FailedDownloadError as f:
errors.extend(f"{fetcher}: {e.__class__.__name__}: {e}" for e in f.exceptions)
continue
except spack.error.SpackError as e:
errors.append("Fetching from {0} failed.".format(fetcher))
tty.debug(e)
errors.append(f"{fetcher}: {e.__class__.__name__}: {e}")
continue
else:
print_errors(errors)
self.fetcher = self.default_fetcher
default_msg = "All fetchers failed for {0}".format(self.name)
raise spack.error.FetchError(err_msg or default_msg, None)
print_errors(errors)
if err_msg:
raise spack.error.FetchError(err_msg)
raise spack.error.FetchError(
f"All fetchers failed for {self.name}", "\n".join(f" {e}" for e in errors)
)
def steal_source(self, dest):
"""Copy the source_path directory in its entirety to directory dest
@@ -772,8 +768,6 @@ def __init__(self):
"cache_mirror",
"steal_source",
"disable_mirrors",
"needs_fetching",
"requires_patch_success",
]
)
@@ -812,6 +806,10 @@ def path(self):
def archive_file(self):
return self[0].archive_file
@property
def requires_patch_success(self):
return self[0].requires_patch_success
@property
def keep(self):
return self[0].keep
@@ -822,64 +820,7 @@ def keep(self, value):
item.keep = value
class DIYStage:
"""
Simple class that allows any directory to be a spack stage. Consequently,
it does not expect or require that the source path adhere to the standard
directory naming convention.
"""
needs_fetching = False
requires_patch_success = False
def __init__(self, path):
if path is None:
raise ValueError("Cannot construct DIYStage without a path.")
elif not os.path.isdir(path):
raise StagePathError("The stage path directory does not exist:", path)
self.archive_file = None
self.path = path
self.source_path = path
self.created = True
# DIY stages do nothing as context managers.
def __enter__(self):
pass
def __exit__(self, exc_type, exc_val, exc_tb):
pass
def fetch(self, *args, **kwargs):
tty.debug("No need to fetch for DIY.")
def check(self):
tty.debug("No checksum needed for DIY.")
def expand_archive(self):
tty.debug("Using source directory: {0}".format(self.source_path))
@property
def expanded(self):
"""Returns True since the source_path must exist."""
return True
def restage(self):
raise RestageError("Cannot restage a DIY stage.")
def create(self):
self.created = True
def destroy(self):
# No need to destroy DIY stage.
pass
def cache_local(self):
tty.debug("Sources for DIY stages are not cached")
class DevelopStage(LockableStagingDir):
needs_fetching = False
requires_patch_success = False
def __init__(self, name, dev_path, reference_link):
@@ -1245,7 +1186,7 @@ def _fetch_and_checksum(url, options, keep_stage, action_fn=None):
# Checksum the archive and add it to the list
checksum = spack.util.crypto.checksum(hashlib.sha256, stage.archive_file)
return checksum, None
except FailedDownloadError:
except fs.FailedDownloadError:
return None, f"[WORKER] Failed to fetch {url}"
except Exception as e:
return None, f"[WORKER] Something failed on {url}, skipping. ({e})"
@@ -1265,7 +1206,3 @@ class RestageError(StageError):
class VersionFetchError(StageError):
"""Raised when we can't determine a URL to fetch a package."""
# Keep this in namespace for convenience
FailedDownloadError = fs.FailedDownloadError

View File

@@ -371,7 +371,6 @@ def use_store(
data.update(extra_data)
# Swap the store with the one just constructed and return it
ensure_singleton_created()
spack.config.CONFIG.push_scope(
spack.config.InternalConfigScope(name=scope_name, data={"config": {"install_tree": data}})
)

View File

@@ -2,12 +2,16 @@
# Spack Project Developers. See the top-level COPYRIGHT file for details.
#
# SPDX-License-Identifier: (Apache-2.0 OR MIT)
import os
import platform
import sys
import pytest
import archspec.cpu
import llnl.util.filesystem as fs
import spack.compilers
import spack.concretize
import spack.operating_systems
@@ -21,8 +25,9 @@ def current_host_platform():
"""Return the platform of the current host as detected by the
'platform' stdlib package.
"""
current_platform = None
if "Linux" in platform.system():
if os.path.exists("/opt/cray/pe"):
current_platform = spack.platforms.Cray()
elif "Linux" in platform.system():
current_platform = spack.platforms.Linux()
elif "Darwin" in platform.system():
current_platform = spack.platforms.Darwin()
@@ -213,7 +218,34 @@ def test_satisfy_strict_constraint_when_not_concrete(architecture_tuple, constra
str(archspec.cpu.host().family) != "x86_64", reason="tests are for x86_64 uarch ranges"
)
def test_concretize_target_ranges(root_target_range, dep_target_range, result, monkeypatch):
spec = Spec(f"a %gcc@10 foobar=bar target={root_target_range} ^b target={dep_target_range}")
spec = Spec(
f"pkg-a %gcc@10 foobar=bar target={root_target_range} ^pkg-b target={dep_target_range}"
)
with spack.concretize.disable_compiler_existence_check():
spec.concretize()
assert spec.target == spec["b"].target == result
assert spec.target == spec["pkg-b"].target == result
@pytest.mark.parametrize(
"versions,default,expected",
[
(["21.11", "21.9"], "21.11", False),
(["21.11", "21.9"], "21.9", True),
(["21.11", "21.9"], None, False),
],
)
@pytest.mark.skipif(sys.platform == "win32", reason="Cray does not use windows")
def test_cray_platform_detection(versions, default, expected, tmpdir, monkeypatch, working_env):
ex_path = str(tmpdir.join("fake_craype_dir"))
fs.mkdirp(ex_path)
with fs.working_dir(ex_path):
for version in versions:
fs.touch(version)
if default:
os.symlink(default, "default")
monkeypatch.setattr(spack.platforms.cray, "_ex_craype_dir", ex_path)
os.environ["MODULEPATH"] = "/opt/cray/pe"
assert spack.platforms.cray.Cray.detect() == expected

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