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743 Commits

Author SHA1 Message Date
Satish Balay
998effa8a1 ginkgo: revert mpi@3.1 dependency:
Currently this breaks builds with OpenMPI - as spack is resolving this to 'openmpi@1.7.4'
2024-09-09 14:26:26 -05:00
Jen Herting
5f9c6299d1 [py-langsmith] added version 0.1.81 (#46259) 2024-09-07 04:29:45 -06:00
Jen Herting
541e40e252 py-httpcore: add v1.0.5 (#46123)
* py-httpcore: Added new version

* [py-httpcore]

- added version 0.18.0
- restructured dependencies as everything has a when and
  type/when ordering was all over the place

* [py-httpcore] ordered dependencies in the order listed in v1.0.5 pyproject.toml

---------

Co-authored-by: Alex C Leute <aclrc@rit.edu>
2024-09-07 02:28:15 -06:00
Jen Herting
ddc8790896 [py-lpips] new package (#46256) 2024-09-06 18:54:51 -06:00
Jen Herting
7d6b643b58 [py-torch-fidelity] New package (#46257)
* [py-torch-fidelity] New package
* [py-torch-fidelity] add patch to fix missing requirements.txt
2024-09-06 18:54:36 -06:00
Dan Lipsa
6f08db4631 Set module variables for all packages before running setup_dependent_package (#44327)
When a package is running `setup_dependent_package` on a parent, ensure
that module variables like `spack_cc` are available. This was often
true prior to this commit, but externals were an exception.

---------

Co-authored-by: John Parent <john.parent@kitware.com>
2024-09-06 18:54:09 -06:00
eugeneswalker
7086d6f1ac use updated container with cmake@3.30.2 (#46262) 2024-09-06 18:48:45 -06:00
Robert Underwood
7a313295ac Sz3 fix (#46263)
* Updated version of sz3
  Supercedes #46128
* Add Robertu94 to maintainers fo r SZ3

---------

Co-authored-by: Robert Underwood <runderwood@anl.gov>
2024-09-06 14:35:55 -07:00
Jen Herting
3bdaaaf47c New package: py-monai (#46140)
* New package: py-monai

* Fixed linked issues with py-monai

* [py-monai] removed extra line

* [py-monai]

- New version 1.3.2
- ran black
- update copyright

* [py-monai] added license

* [py-monai]

- moved build only dependencies
- specified newer python requirements for newer versions

---------

Co-authored-by: vehrc <vehrc@rit.edu>
2024-09-06 15:19:12 -06:00
Massimiliano Culpo
a3fa54812f Remove deprecated config options (#44061)
These options have been deprecated in v0.21, and
slated for removal in v0.23
2024-09-06 15:14:36 -06:00
Kyle Gerheiser
afc9615abf libfabric: Add versions v1.22.0 and v1.21.1 (#46188)
* Add libfabric v1.22.0 and v1.21.1

* Fix whitespace
2024-09-06 14:21:41 -05:00
Adam J. Stewart
19352af10b GEOS: add v3.13.0 (#46261) 2024-09-06 12:17:41 -07:00
Robert Underwood
e4f8cff286 Updated version of sz3 (#46246)
Supercedes #46128

Co-authored-by: Robert Underwood <runderwood@anl.gov>
2024-09-06 12:15:03 -07:00
Sam Reeve
76df9de26a Update ExaCA backend handling and add version 2.0 (#46243)
* Add exaca 2.0
* Add kokkos/cuda/hip backend support for exaca
2024-09-06 14:53:21 -04:00
Auriane R.
983e7427f7 Replace if ... in spec with spec.satisfies in f* and g* packages (#46127)
* Replace if ... in spec with spec.satisfies in f* and g* packages

* gromacs: ^amdfftw -> ^[virtuals=fftw-api] amdfftw

* flamemaster: add virtuals lapack for the amdlibflame dependency

---------

Co-authored-by: Wouter Deconinck <wdconinc@gmail.com>
2024-09-06 13:22:19 -05:00
Adam J. Stewart
d9df520e85 py-pandas: relax build dependencies (#46229) 2024-09-06 11:19:49 -07:00
Adam J. Stewart
b51fd9f5a6 py-torchgeo: zipfile-deflate64 no longer required (#46233) 2024-09-06 11:18:10 -07:00
Robert Underwood
8058cd34e4 Require a newer version of cudnn for cupy (#46248)
cupy 12 needs a newer version of cudnn as documented here.  Supercedes #46128

Co-authored-by: Robert Underwood <runderwood@anl.gov>
2024-09-06 10:56:46 -07:00
Robert Underwood
2f488b9329 Use an HTTP git url for libpressio-opt (#46249)
superceds #46128

Co-authored-by: Robert Underwood <runderwood@anl.gov>
2024-09-06 10:43:23 -07:00
Peter Scheibel
78a4d3e7d2 Mixed-source cflags (#41049)
Allow flags from different sources (compilers, `require:`, command-line
specs, and `depends_on`) to be merged together, and enforce a consistent
order among them.

The order is based on the sources, e.g. flags on specs from the command
line always come last. Some flag order consistency issues are fixed:

1. Flags from `compilers.yaml` and the command line were always intra- and
   inter-source order consistent.
2. Flags from dependents and packages.yaml (introduced via `require:`)
   were not: for `-a -b` from one source and `-c` from another, the final
   result might rearrange `-a -b`, and would also be inconsistent in terms
   of whether `-c` came before or after.

(1) is/was handled by going back to the original source, i.e., flags are
retrieved directly from the command line spec rather than the solver.

(2) is addressed by:

* Keeping track of grouped flags in the solver
* Keeping track of flag sources in the solver on a per-flag basis

The latter info is used in this PR to enforce DAG ordering on flags
applied from multiple dependents to the same package, e.g., for this
graph:

```
   a
  /|\
 b | c
  \|/
   d
```

If `a`, `b`, and `c` impose flags on `d`, the combined flags on `d` will
contain the flags of `a`, `b`, and `c` -- in that order. 

Conflicting flags are allowed (e.g. -O2 and -O3). `Spec.satisifes()` has
been updated such that X satisfies Y as long as X has *at least* all of
the flags that Y has. This is also true in the solver constraints.
`.satisfies` does not account for how order can change behavior (so
`-O2 -O3` can satisfy `-O3 -O2`); it is expected that this can be
addressed later (e.g. by prohibiting flag conflicts).

`Spec.constrain` and `.intersects` have been updated to be consistent
with this new definition of `.satisfies`.
2024-09-06 10:37:33 -07:00
Juan Miguel Carceller
2b9a621d19 sleef: add the PIC flag (#46217) 2024-09-06 09:37:20 -06:00
Juan Miguel Carceller
fa5f4f1cab pthreadpool: add the PIC flag (#46216) 2024-09-06 15:11:03 +02:00
John W. Parent
4042afaa99 Bootstrap GnuPG and file on Windows (#41810)
Spack can now bootstrap two new dependencies on Windows: GnuPG, and file. 

These dependencies are modeled as a separate package, and they install a cross-compiled binary.
Details on how they binaries are built are in https://github.com/spack/windows-bootstrap-resources
2024-09-06 14:26:46 +02:00
Harmen Stoppels
7fdf1029b7 fish: use shlex.quote instead of custom quote (#46251) 2024-09-06 11:38:14 +00:00
Stephen Nicholas Swatman
814f4f20c0 py-pybind11: add v2.13.0-v2.13.4 and new conflict (#45872)
This PR adds py-pybind11 versions 2.13.0, 2.13.1, 2.13.2, 2.13.3, and
2.13.4. It also adds a new conflict between gcc 14 and pybind versions
up to and including 2.13.1.
2024-09-06 10:38:35 +02:00
Harmen Stoppels
7c473937ba db: more type hints (#46242) 2024-09-06 09:13:14 +02:00
Robert Underwood
9d754c127a Require a newer version of cudnn for cupy (#46247)
cupy 12 needs a newer version of cudnn as documented here.  Supercedes #46128

Co-authored-by: Robert Underwood <runderwood@anl.gov>
2024-09-05 23:12:46 -06:00
Massimiliano Culpo
9a8bff01ad Allow deprecating more than one property in config (#46221)
* Allow deprecating more than one property in config

This internal change allows the customization of errors
and warnings to be printed when deprecating a property.

Signed-off-by: Massimiliano Culpo <massimiliano.culpo@gmail.com>

* fix

Signed-off-by: Massimiliano Culpo <massimiliano.culpo@gmail.com>

* Use a list comprehension for "issues"

Signed-off-by: Massimiliano Culpo <massimiliano.culpo@gmail.com>

---------

Signed-off-by: Massimiliano Culpo <massimiliano.culpo@gmail.com>
2024-09-05 15:33:20 -07:00
Nicole C.
434a703bcf Windows: Update pytest with echo and remove others (#45620)
* Windows: Update pytest with echo and remove others

* Fix style

* Remove unused pytest import in undevelop

* Update test_test_part_pass to be Window compatible

* Style
2024-09-05 15:34:19 -05:00
Adam J. Stewart
a42108438d py-contourpy: add v1.3.0 (#46225) 2024-09-05 22:16:14 +02:00
Sebastian Pipping
1be9b7f53c expat: Add 2.6.3 with security fixes + deprecate vulnerable 2.6.2 (#46208) 2024-09-05 14:09:34 -06:00
Dom Heinzeller
6b05a80745 Bug fixes for building py-netcdf4 and py-ruamel-yaml-clib with apple-clang@15 (#46184)
* Fix compiler flags in py-netcdf4 for apple-clang@15:
* Fix compiler flags in py-ruamel-yaml-clib for apple-clang@15:
2024-09-05 11:29:26 -07:00
Fernando Ayats
4d36b0a5ef npb: fix mpi rank mismatch errors (#46075)
MPI variant has several rank mismatch errors, which are silently
ignored. This downgrades the errors to warnings.
2024-09-05 11:27:15 -07:00
Adam J. Stewart
636843f330 PyTorch: update ecosystem (#46220) 2024-09-05 11:06:57 -07:00
Adam J. Stewart
d4378b6e09 awscli-v2: remove upperbound on cryptography (#46222) 2024-09-05 11:04:56 -07:00
Adam J. Stewart
69b54d9039 py-imageio: add v2.35.1 (#46227) 2024-09-05 10:57:57 -07:00
Adam J. Stewart
618866b35c py-laspy: add v2.3.5 (#46228) 2024-09-05 10:56:51 -07:00
Adam J. Stewart
47bd8a6b26 py-pyvista: add v0.44.1 (#46231) 2024-09-05 10:53:42 -07:00
Adam J. Stewart
93d31225db py-tifffile: add v2024 (#46232) 2024-09-05 10:52:21 -07:00
Alex Richert
c3a1d1f91e Add when's to some tau dependencies (#46212)
* Add when's to some tau dependencies

* [@spackbot] updating style on behalf of AlexanderRichert-NOAA
2024-09-05 10:35:01 -07:00
estewart08
33621a9860 [rocm-openmp-extras] - Add support for flang-legacy in 6.1.2 (#46130)
* [rocm-openmp-extras] - Add support for flang-legacy in 6.1.2
* [rocm-openmp-extras] - Remove unused variable flang_legacy_dir
* [rocm-openmp-extras] - Limit flang-legacy build to 6.1 and newer ROCm versions
2024-09-05 12:27:50 -05:00
etiennemlb
055eb3cd94 PLUMED: Using a C compiler variable (#46082)
* Using a C compiler variable

* homogeneity
2024-09-05 10:43:28 -06:00
Massimiliano Culpo
c4d18671fe Avoid best-effort expansion of stacks (#40792)
fixes #40791

Currently stacks behave differently if used in unify:false
environments, which leads to inconsistencies during concretization.

For instance, we might have two abstract user specs that do not
intersect with each other map to the same concrete spec in the
environment. This is clearly wrong.

This PR removes the best effort expansion, so that user specs
are always applied strictly.
2024-09-05 10:32:15 -06:00
Thomas Madlener
5d9f0cf44e gaudi: Specify boost dependencies explicitly and cleanup package (#46194)
* gaudi: Specify boost components and add +fiber for v39

* gaudi: Limit fmt version to allow building master branch

* Make boost dependencies a bit more readable

* Remove patches for no longer existing versions
2024-09-05 08:27:04 -06:00
Harmen Stoppels
02faa7b97e reindex: ensure database is empty before reindex (#46199)
fixes two tests that did not clear the in-memory bits of a database
before calling reindex.
2024-09-05 14:53:29 +02:00
Mikael Simberg
d37749cedd pika: Add 0.28.0 (#46207)
* pika: Add 0.28.0

* Add conflict between pika 0.28.0 and dla-future
2024-09-05 14:12:21 +02:00
Harmen Stoppels
7e5e6f2833 Pass Database layout in constructor (#46219)
Ensures that Database instances do not reference a global
`spack.store.STORE.layout`. Simplify Database.{add,reindex} signature.
2024-09-05 10:49:03 +00:00
Massimiliano Culpo
37ea9657cf Remove test_external_package_module (#46218)
This test was possibly meant for the Cray platform, and
currently is a no-op.

Signed-off-by: Massimiliano Culpo <massimiliano.culpo@gmail.com>
2024-09-05 12:10:59 +02:00
Harmen Stoppels
2107a88514 spack deprecate: deprecate --link-type flag (#46202) 2024-09-05 11:06:46 +02:00
Auriane R.
1a4b07e730 Replace if ... in spec with spec.satisfies in d* and e* packages (#46126)
* Replace if ... in spec with spec.satisfies in d* and e* packages

* Use virtuals for different mpi implementations in esmf

* esmf: ^[virtuals=mpi] mpt

* extrae: ^[virtuals=mpi] intel-oneapi-mpi

---------

Co-authored-by: Wouter Deconinck <wdconinc@gmail.com>
2024-09-04 22:33:51 -06:00
Jack Morrison
c98045e028 libfabric: Add CUDA variant (#46203)
Signed-off-by: Jack Morrison <jack.morrison@cornelisnetworks.com>
2024-09-04 21:43:25 -06:00
mvlopri
bc5456a791 seacas: require +metis and +mpi instead of +parmetis (#46205)
This change aligns the build condition for parmetis with the
depends_on condition.
The current build condition of parmetis looks for "+parmetis" in
the spec which is not added by the depends_on as that adds
"^parmetis" instead.
2024-09-04 21:03:02 -06:00
Pranav Sivaraman
656720a387 py-schema: add v0.7.7 (#46210)
* py-schema: add v0.7.7

* py-schema: fix when spec

Co-authored-by: Wouter Deconinck <wdconinc@gmail.com>

---------

Co-authored-by: Wouter Deconinck <wdconinc@gmail.com>
2024-09-04 20:07:35 -06:00
Mikael Simberg
9604c0a9b3 boost: Conditionally include/exclude Boost.Json depending on Boost version (#46200) 2024-09-04 16:50:06 -06:00
Pranav Sivaraman
ee96194486 py-misk: add new package (#46153) 2024-09-04 11:25:01 -07:00
Felix Thaler
ab21fc1daf Added jump package (#46164) 2024-09-04 11:16:20 -07:00
Pranav Sivaraman
d593ad0c06 py-trieregex: new package (#46154)
* py-trieregex: new package
2024-09-04 10:58:08 -07:00
Weiqun Zhang
254fe6ed6e amrex: add v24.09 (#46171) 2024-09-04 10:54:49 -07:00
renjithravindrankannath
7e20874f54 rocm-openmp-extras: Avoiding registration of duplicate check-targets and fix for the failure in hostexec (#45658)
* Adding addtional check for omptarget library for amdgpu in nvidia environment
* Avoiding registration of duplicate when built on cuda
* Adding hsa library path in LD_LIBRARY_PATH
* Correction in hsa prefix library path in LD_LIBRARY_PATH
2024-09-04 10:31:28 -07:00
Vanessasaurus
cd4c40fdbd Automated deployment to update package flux-core 2024-09-04 (#46191)
Co-authored-by: github-actions <github-actions@users.noreply.github.com>
2024-09-04 10:28:44 -07:00
Harmen Stoppels
c13e8e49fe goaccess: new package (#46193) 2024-09-04 10:23:28 -07:00
Adam J. Stewart
35a2a0b3d0 py-rasterio: add v1.3.11 (#46195)
* py-rasterio: add v1.3.11
* Use default_args
2024-09-04 09:45:16 -07:00
Adam J. Stewart
22d69724f4 py-fiona: add v1.10.0 (#46196) 2024-09-04 09:36:43 -07:00
Adam J. Stewart
f6e3f6eec7 py-numpy: add v2.1.1 (#46197) 2024-09-04 09:33:07 -07:00
G-Ragghianti
866c440f0c Updating git repo location (#46183) 2024-09-04 10:34:05 -05:00
Juan Miguel Carceller
fe6f5b87dc texlive: clean up recipe (#45863)
* texlive: clean up recipe

* Update the poppler dependency

* Fix typo

---------

Co-authored-by: jmcarcell <jmcarcell@users.noreply.github.com>
2024-09-04 10:20:23 -05:00
Vicente Bolea
3df3f40984 paraview: add new v5.13.0 release (#46091) 2024-09-04 10:14:52 -05:00
Satish Balay
33f4a40df4 trilinos: update @[master,develop] dependency on kokkos (#46182)
==> Error: InstallError: For Trilinos@[master,develop], ^kokkos version in spec must match version in Trilinos source code. Specify ^kokkos@4.4.00 for trilinos@[master,develop] instead of ^kokkos@4.3.01.
2024-09-04 07:34:20 -06:00
Kyle Knoepfel
7ba0132f66 llvm: improve detection regexes (#46187) 2024-09-04 04:12:42 -06:00
Mikael Simberg
744f034dfb Add conflict between llvm-amdgpu until version 5 and ninja since version 1.12.0 (#45788)
* Add conflict between llvm-amdgpu and ninja since version 1.12.0

* Update llvm-amdgpu and ninja conflict to extend to 6.0
2024-09-04 10:37:48 +02:00
Massimiliano Culpo
d41fb3d542 llvm: be more strict with detection (#46179) 2024-09-03 22:37:30 +02:00
Laurent Aphecetche
9b077a360e root: fix @loader_path on macOS (#44826)
* root: fix @loader_path on macOS

* root: use loader patch from upstream

Co-authored-by: Wouter Deconinck <wdconinc@gmail.com>

* add missing comma

* root: rm unused patch

* root: conflict on macos 12 for @:6.27 when +python

---------

Co-authored-by: Wouter Deconinck <wdconinc@gmail.com>
2024-09-03 09:50:31 -05:00
Stephen Nicholas Swatman
5c297d8322 root: fix X11 and OpenGL-related issues on macOS (#45632)
* root: Add dependency on libglx

We have been trying to build the Acts package on MacOS, and in this
process we have been running into problems with the ROOT spec on that
operating system; the primary issue we are encountering is that the
compiler is unable to find the `GL/glx.h` header, which is part of glx.
It seems, therefore, that ROOT depends on libglx, but this is not
currently encoded in the spec. This commit ensures that ROOT depends on
the virtual libglx package when both the OpenCL and X11 variants are
enabled.

* Enable builtin glew on MacOS

* Allow `root+opengl+aqua~x` on macOS
2024-09-03 08:32:17 -05:00
Massimiliano Culpo
9e18e63053 solver: minor cleanup and optimization (#46176)
Signed-off-by: Massimiliano Culpo <massimiliano.culpo@gmail.com>
2024-09-03 10:35:54 +00:00
Harmen Stoppels
069286bda7 database: remove a few class properties (#46175) 2024-09-03 11:22:14 +02:00
Richard Berger
1679b5e141 nvpl updates (#45922)
* nvpl-blas: add new version 0.3.0

* nvpl-lapack: add new version 0.2.3.1
2024-09-03 08:07:24 +02:00
Pierre Augier
1f935ac356 Add py-pytest-allclose package (#45877) 2024-09-02 14:34:24 -06:00
Pariksheet Nanda
e66e572656 py-cellprofiler: add 4.2.6 new package (#44824)
* py-cellprofiler: add 4.2.6 new package

* py-mysqlclient: Limit pkg-config patch to @1.4:

Co-authored-by: Wouter Deconinck <wdconinc@gmail.com>

---------

Co-authored-by: Wouter Deconinck <wdconinc@gmail.com>
2024-09-02 14:21:39 -05:00
JCGoran
17d3d17d46 py-sympy: add version 1.13.0 (#46163)
* sympy: add version 1.13.0

* sympy: update deps
2024-09-02 09:51:44 -06:00
Thomas Madlener
c814fb5fe6 podio: Add the new datasource variant once it is available (#46078)
* podio: Add the new datasource variant once it is available

* Make sure to require a suitable minimal root version
2024-09-02 08:39:43 -05:00
Harmen Stoppels
fe2d06399f db: type hints (#46168) 2024-09-02 14:44:49 +02:00
Harmen Stoppels
b5dec35113 projections: simplify expression (#46167) 2024-09-02 12:38:47 +00:00
Harmen Stoppels
20565ba8ab remove dead code: fs.is_writable_dir was used on file (#46166) 2024-09-02 11:55:40 +00:00
Wouter Deconinck
c47a3ee05b package_base: sort deprecated versions later in preferred_version (#46025) 2024-09-02 10:42:15 +00:00
Wouter Deconinck
aaa7469b92 py-vector: add v1.4.2, v1.5.0; variant awkward (#46039) 2024-09-02 09:41:15 +02:00
Asher Mancinelli
1f8a6d8e8b [neovim] add utf8proc dependency (#46064)
I believe utf8proc was added as a neovim dependency in neovim/neovim#26165
and is only in the master branch.
2024-09-02 09:28:30 +02:00
Richard Berger
654bf45c01 kokkos-nvcc-wrapper: add new 4.4.00 version (#46067) 2024-09-02 09:27:13 +02:00
Wouter Deconinck
daa42be47f ddt: deprecate all versions in favor of linaro-forge (#46115) 2024-09-02 09:15:47 +02:00
Satish Balay
ca179deb8e petsc, py-petsc4py: add v3.21.5 (#46151) 2024-09-02 09:09:05 +02:00
Satish Balay
8f6092bf83 xsdk: remove develop and 0.7.0, and deprecate 0.8.0 (#46121) 2024-09-02 09:04:36 +02:00
pauleonix
6b649ccf4f cuda: add v12.6.1 (#46143)
Update build system conflict between CUDA 12.6 and Clang 18
2024-09-02 08:46:03 +02:00
Georgia Stuart
d463d4566d docs: update conditional definition arch (#46139)
Signed-off-by: Georgia Stuart <gstuart@umass.edu>

Co-authored-by: Jordan Galby <67924449+Jordan474@users.noreply.github.com>
2024-09-02 08:32:26 +02:00
Adam J. Stewart
f79be3022b py-torchgeo: add v0.6.0 (#46158) 2024-09-02 08:30:02 +02:00
eugeneswalker
7327e731b4 e4s ci stacks: add geopm-runtime (#45881) 2024-09-02 08:24:10 +02:00
Adam J. Stewart
ab6d494fe4 py-horovod: py-torch 2.1.0 now supported (#46152) 2024-09-02 08:21:16 +02:00
Christophe Prud'homme
e5aa74e7cb package cln 1.3.7 feelpp/spack#2 (#46162)
* package cln 1.3.7 feelpp/spack#2

* add myself as maintainer

* fix style issue, rm blankline
2024-09-01 22:38:26 -05:00
Gavin John
728f8e2654 nanomath: add version 1.4.0 (#46159) 2024-09-01 17:23:57 -06:00
Stephen Sachs
9a58a6da0d [openmpi] Add optional debug build variant (#45708) 2024-09-01 11:02:04 -05:00
Stephen Nicholas Swatman
395491815a dd4hep: mark conflict with root@6.31.1: (#45855)
dd4hep versions up to and including 1.27 had a conflict with root
versions starting from 6.31.1, as shown in
https://github.com/AIDASoft/DD4hep/issues/1210. This PR explicitly adds
that conflict to the spec.
2024-09-01 10:54:20 -05:00
Joseph Wang
fd98ebed9d add rapidjson conflict for gcc14 (#46007) 2024-09-01 10:01:53 -05:00
Harmen Stoppels
f7de621d0c Remove redundant inspect.getmodule(self) idiom in packages (#46073) 2024-09-01 11:25:51 +02:00
dunatotatos
a5f404cff5 Update py-numcodecs. (#45715) 2024-08-31 15:15:18 -06:00
Martin Pokorny
8100b0d575 casacore: add new versions 3.6.1, 3.6.0, 3.2.1 (#46068) 2024-08-31 15:14:52 -06:00
Juan Miguel Carceller
b38ab54028 whizard: add a patch when using hepmc3 3.3.0 or newer (#45862)
* whizard: add a patch when using hepmc3 3.3.0 or newer

* whizard: comment with patch origin

---------

Co-authored-by: jmcarcell <jmcarcell@users.noreply.github.com>
Co-authored-by: Wouter Deconinck <wdconinc@gmail.com>
2024-08-31 13:13:42 -06:00
Stephen Nicholas Swatman
412f22b76a podio: apply patch for gcc 14 builds (#45854)
* podio: apply patch for gcc 14 builds

Podio versions after 0.17.0 but before 1.0.0 are broken when using gcc
14 because of a missing include, which is addressed in the podio pull
request at https://github.com/AIDASoft/podio/pull/600. This commit
patches pre-1.0.0 versions of Podio so they can be compiled with gcc 14,
which is important for building Acts.

* Style

* Style 2

* Fixes

* Add comment:

* Add sha256
2024-08-31 13:42:02 -05:00
Jen Herting
d226ef31bd New package: py-jsonlines (#46124)
* py-jsonlines: new package

* py-jsonlines: fix dependency

---------

Co-authored-by: Alex C Leute <acl2809@rit.edu>
2024-08-31 12:30:07 -05:00
Jen Herting
ae32af927d New package: py-ops (#46122)
* New package: py-ops

* [py-ops]

- added version 2.16.0
- ran black
- updated copyright
- added license()

---------

Co-authored-by: vehrc <vehrc@rit.edu>
2024-08-31 12:11:27 -05:00
Alex Richert
400dd40492 sigio: add v2.3.3 (#46116) 2024-08-31 12:01:08 -05:00
dependabot[bot]
04bdff33ad build(deps): bump actions/setup-python from 5.1.1 to 5.2.0 (#46129)
Bumps [actions/setup-python](https://github.com/actions/setup-python) from 5.1.1 to 5.2.0.
- [Release notes](https://github.com/actions/setup-python/releases)
- [Commits](39cd14951b...f677139bbe)

---
updated-dependencies:
- dependency-name: actions/setup-python
  dependency-type: direct:production
  update-type: version-update:semver-minor
...

Signed-off-by: dependabot[bot] <support@github.com>
Co-authored-by: dependabot[bot] <49699333+dependabot[bot]@users.noreply.github.com>
2024-08-31 11:51:49 -05:00
Pranav Sivaraman
017e3dd417 doctest: add new package (#46138) 2024-08-31 11:48:20 -05:00
Alex Richert
f7e3902ca8 landsfcutil: add v2.4.2 (#46144) 2024-08-31 09:13:10 -05:00
Alex Richert
89da8d4c84 gfsio: add v1.4.2 (#46145) 2024-08-31 09:12:23 -05:00
Alex Richert
8cac74699b sfcio: add v1.4.2 (#46146)
* sfcio: add v1.4.2

* [@spackbot] updating style on behalf of AlexanderRichert-NOAA
2024-08-31 09:11:13 -05:00
dependabot[bot]
db311eef46 build(deps): bump actions/upload-artifact from 4.3.6 to 4.4.0 (#46149)
Bumps [actions/upload-artifact](https://github.com/actions/upload-artifact) from 4.3.6 to 4.4.0.
- [Release notes](https://github.com/actions/upload-artifact/releases)
- [Commits](834a144ee9...50769540e7)

---
updated-dependencies:
- dependency-name: actions/upload-artifact
  dependency-type: direct:production
  update-type: version-update:semver-minor
...

Signed-off-by: dependabot[bot] <support@github.com>
Co-authored-by: dependabot[bot] <49699333+dependabot[bot]@users.noreply.github.com>
2024-08-31 08:38:16 -05:00
etiennemlb
1427735876 unzip: use more generic strip flag for cce (#46087)
* Use more generic strip flag for cce

* [@spackbot] updating style on behalf of etiennemlb

* Apply always
2024-08-30 12:57:24 -05:00
Kacper Kornet
f88ca8cc1f plumed: add v2.9.1 (#46022) 2024-08-30 15:29:49 +02:00
Massimiliano Culpo
bf1f4e15ee boost: remove Compiler.cxx_names (#46037) 2024-08-30 13:25:40 +02:00
Harmen Stoppels
dd756d53de windows-vis: fix failing pipeline (#46135)
* seacas: fix gnu parallel dep

* add vtk@9.0 platform=windows conflict
2024-08-30 12:57:16 +02:00
Massimiliano Culpo
1c1970e727 Put some more constraint on a few mpi providers (#46132)
This should help not selecting, by default, some niche implementation that are supposed to be externals.

Signed-off-by: Massimiliano Culpo <massimiliano.culpo@gmail.com>
2024-08-30 11:16:35 +02:00
Massimiliano Culpo
c283fce487 Remove DetectedPackage class (#46071)
This PR simplifies the code doing external spec detection by removing 
the `DetectedPackage` class. Now, functions accepting or returning lists 
of `DetectedPackage`, will accept or return list of specs.

Performance doesn't seem to change if we use `Spec.__reduce__` instead 
of `DetectionPackage.__reduce__`.
2024-08-30 08:11:17 +00:00
Harmen Stoppels
199cbce5ef windows-vis: vtk~mpi (#46133) 2024-08-30 09:38:41 +02:00
Massimiliano Culpo
82dea7e6ce mpitrampoline: fix wrong use of compiler.cc_names (#46038) 2024-08-30 07:50:09 +02:00
Harmen Stoppels
bd71ce5856 cray: allow failure due to broken blas (#46111)
1. libsci_cray.so is broken, as it fails to list `libdl.so` in
   DT_NEEDED.
2. cray compilers fail to build a different blas
2024-08-30 07:49:10 +02:00
Mark Abraham
73fc86cbc3 gromacs: support version 2024.3 (#46117) 2024-08-29 17:38:04 -06:00
Chris White
3589edcc6d conduit package: Honor compiler extra_rpaths + extras (#46046)
- Honor compiler extra_rpaths (this build bypasses spack wrappers,
  so the RPATHs are added explicitly as CMake options)
- Use root_cmakelists_dir instead of adding it to the command line
- Add BLT as a dependency, allowing different versions outside of what
  is in the tarball
- Put a copy of host-config in the stage directory: this allows
  examination of the host-config when a build fails (before, the
  host-config was just stored in the install directory, which is
  deleted by default on a failed build)
2024-08-29 13:59:15 -07:00
Chris Marsh
cade66d842 CMakePackage: Set policy CMP0042 NEW on macos (#46114)
so linking to shared libraries works well at runtime on darwin for all packages with cmake_minimum_required < 3.
2024-08-29 18:49:53 +00:00
Louise Spellacy
c5766aa757 linaro-forge: added 24.0.4 version (#46112)
Updated platform.machine() to only match "aarch64".
"arm64" not supported by "spack arch"
2024-08-29 12:33:49 -06:00
Harmen Stoppels
c3e9bd4fbf spectrum-mpi: no windows (#46119) 2024-08-29 20:04:33 +02:00
Harmen Stoppels
05357052ac py-greenlet: add missing forward compat bound (#46113) 2024-08-29 17:55:26 +02:00
Harmen Stoppels
dc3f5cd606 windows_establish_runtime_linkage: post install hook (#46103) 2024-08-29 17:16:36 +02:00
Alberto Invernizzi
9a16927993 paraview: add cdi support (#44222)
* add basic CDI package

* add CDI variant to paraview

* [@spackbot] updating style on behalf of albestro

---------

Co-authored-by: albestro <albestro@users.noreply.github.com>
2024-08-29 14:19:04 +02:00
Wouter Deconinck
093b273f5c py-mypy: add v1.11.2 (#46099) 2024-08-29 05:46:36 -06:00
Tamara Dahlgren
b6ff126494 Executable: make the timeout message readable (#46098) 2024-08-29 11:46:15 +00:00
Harmen Stoppels
fe8f631b7d tau: fix (cray) compiler names/paths (#46104)
fixes a build issue on cray ci
2024-08-29 11:24:58 +02:00
Massimiliano Culpo
f9065f0c7e Remove "get_compiler_duplicates" (#46077)
This function is used only in tests.
2024-08-29 06:53:17 +02:00
etiennemlb
699735016f Add more compiler leniency (#46083) 2024-08-28 16:33:26 -07:00
Arne Becker
ec85bbe3f7 perl-compress-bzip2: new package (#46055)
* perl-compress-bzip2: new package
  Adds Compress::Bzip2
* Use bzip2 from Spack, not system
2024-08-28 13:57:01 -07:00
Taillefumier Mathieu
7e1ad8f321 [Update] New version of sirius (#46049) 2024-08-28 13:38:06 -07:00
Derek Ryan Strong
0eb8f4f0f9 pmix: add v5.0.3 and fix variants (#45621)
* Add pmix v5.0.3 and fix variants
* Update pmix homepage link
* pmix: Simplify/update hwloc dependency
* pmix: Update versions for --disable-sphinx configure option
* pmix: Add munge variant
* pmix: Add zlib dependency
* pmix: Fix dependency py-sphinx@5
2024-08-28 12:59:48 -07:00
renjithravindrankannath
ee27dc5d45 llvm-amdgpu: Updating LD_LIBRARY_PATH w.r.t new prefix path (#45940)
* Updating LD_LIBRARY_PATH w.r.t new prefix path

* Updating hsa external path for 6.x
2024-08-28 11:26:05 -07:00
Robert Underwood
ec0a57cba4 py-numcodecs rename git branch to match upstream (#46085)
* py-numcodecs rename git branch to match upstream
2024-08-28 19:16:23 +02:00
Jordan Galby
4c91e6245c Don't check checksums on spack-develop packages (#46076)
Fix regression introduced in spack 0.22.1 where Spack would ask about checksums
on spack-develop packages.
2024-08-28 17:07:30 +00:00
Satish Balay
6a1dfbda97 mfem, pflotran, alquimia: remove old versions with xsdk string (in version) that were used in old/removed xsdk releases (#45837) 2024-08-28 10:03:51 -07:00
Jordan Galby
6b0011c8f1 For "when:" and install_environment.json: Support fully qualified hostname (#45522) 2024-08-28 18:38:54 +02:00
Nicholas Sly
8b5521ec0a Replace unparsable apostrophe character with ASCII "'". (#46069) 2024-08-28 18:34:06 +02:00
Mikael Simberg
b9e4e98f15 boost: install BoostConfig.cmake even when header-only (#46062)
* Install BoostConfig.cmake even when header-only

* boost: Only use --without-libraries when --with-libraries would have an empty list
2024-08-28 17:44:02 +02:00
Harmen Stoppels
85487f23bc buildcache.py: elide string not spec (#46074) 2024-08-28 15:27:44 +02:00
Harmen Stoppels
fb4811ec3f Drop now redundant use of inspect (#46057)
inspect.isclass -> isinstance(..., type)
inspect.getmro -> cls.__mro__
2024-08-28 14:35:08 +02:00
Mark Abraham
202e64872a gromacs: add conflict between NVSHMEM and cuFFTMp (#46065)
* Add conflict between NVSHMEM and cuFFTMp for GROMACS package

These don't work in the same build configuration.

* [@spackbot] updating style on behalf of mabraham

* Update package.py

Also constrain NVSHMEM appropriately

* Update var/spack/repos/builtin/packages/gromacs/package.py

Co-authored-by: Andrey Alekseenko <al42and@gmail.com>

* Update package.py

* [@spackbot] updating style on behalf of mabraham

* Update package.py

* Update package.py

* Update package.py

* [@spackbot] updating style on behalf of mabraham

---------

Co-authored-by: mabraham <mabraham@users.noreply.github.com>
Co-authored-by: Christoph Junghans <christoph.junghans@gmail.com>
Co-authored-by: Andrey Alekseenko <al42and@gmail.com>
2024-08-28 04:34:37 -06:00
Massimiliano Culpo
25ba3124bd Spec.from_detection now accounts for external prefix (#46063)
Change the signature of Spec.from_detection to set the
external prefix, and the external modules, if they are
present.

Delete "spack.package_prefs.spec_externals" since it
is unused.
2024-08-28 10:51:36 +02:00
Massimiliano Culpo
df57e1ceb3 Remove llnl.util.lang.has_method, use built-in hasattr instead (#46072) 2024-08-28 10:17:12 +02:00
Adam J. Stewart
59b4b785e0 py-numpy: add v2.0.2 (#46056) 2024-08-27 11:20:42 -07:00
Brian Spilner
b1b21a4d02 cdo-2.4.3 (#46033)
cdo-2.4.3 - fixed hash
2024-08-27 11:17:16 -07:00
Ye Luo
b1af32cb60 Introduce offload variant for llvm >= 19. (#45865) 2024-08-27 13:44:01 -04:00
Harmen Stoppels
9d8f94a7c8 spack_yaml: delete custom deepcopy (#46048) 2024-08-27 18:45:44 +02:00
Massimiliano Culpo
1297673a70 Remove "prevent_cray_detection" context manager (#46060)
This context manager was used to prevent detecting a platform
as "cray". Since now Cray machines are detected as linux, we can
remove the context manager.
2024-08-27 18:43:07 +02:00
Harmen Stoppels
0fee2c234e config.py: tell don't ask (#46040) 2024-08-27 15:55:44 +02:00
Alec Scott
229cf49c71 bfs: add v4.0.1 (#46044)
* bfs: add v4.0.1

* fix style
2024-08-27 08:15:38 -05:00
Massimiliano Culpo
394e6159d6 Remove a few unused classes and globals (#46054) 2024-08-27 15:06:39 +02:00
Stephen Nicholas Swatman
cbe18d9cbc detray: add version 0.73.0 (#46053)
This commit adds version 0.73.0 of the detray package. As this version
drops support for pre-C++20 standards, I had to update the `cxxstd`
variant logic.
2024-08-27 08:05:06 -05:00
Stephen Nicholas Swatman
2d83707f84 acts: add version 36.2.0 (#46052)
This commit adds version 36.2.0 of ACTS. As far as I can tell, there are
no dependency changes.
2024-08-27 07:18:06 -05:00
Massimiliano Culpo
9a91f021a7 Move spack.compilers._to_dict to Compiler (#46051) 2024-08-27 14:01:50 +02:00
Harmen Stoppels
297e43b097 abi.py: remove (#46047) 2024-08-27 10:38:54 +02:00
FrederickDeny
900765901d Added e4s-cl@1.0.4 (#46043) 2024-08-26 23:26:12 -06:00
Nick Hagerty
680d1f2e58 lammps: improve FFT selection and add fft_kokkos variant (#45969) 2024-08-27 07:15:12 +02:00
Richard Berger
76957f19f9 nvpl-fft: new package (#45985) 2024-08-26 21:42:30 -06:00
AcriusWinter
c7001efeb8 sundials: new test API (#45373)
* sundials: new test API

---------

Co-authored-by: Tamara Dahlgren <dahlgren1@llnl.gov>
2024-08-26 15:34:06 -07:00
Harmen Stoppels
a60d1084b1 jsonschema: remove optional deps (#46041) 2024-08-26 22:15:52 +02:00
Harmen Stoppels
497e19f0e3 distro.py: avoid excessive stat calls (#46030) 2024-08-26 18:55:55 +02:00
Pranav Sivaraman
cd6ee96398 parallel-hashmap: add v1.3.12 (#46017)
Co-authored-by: pranav-sivaraman <pranav-sivaraman@users.noreply.github.com>
2024-08-26 10:03:38 -06:00
Wouter Deconinck
904d85b53b fastjson: add v1.2.83, v2.0.52 (#45733)
Co-authored-by: Massimiliano Culpo <massimiliano.culpo@gmail.com>
2024-08-26 16:29:02 +02:00
Tamara Dahlgren
199653dd31 Bugfix/hsakmt-roct: use correct version for rocm-core and llvm-amdgpu (#45817) 2024-08-26 16:14:20 +02:00
Matthieu Dorier
fdfb4e9893 mruby: add v3.3.0 (#45964) 2024-08-26 15:33:00 +02:00
Adam J. Stewart
afa76ebbdc py-smp: add v0.3.4 (#45967) 2024-08-26 15:31:53 +02:00
Patrick Diehl
e5c045cc1c kokkos: add v4.4.00 (#45758)
Co-authored-by: Patrick Diehl <diehlpk@lanl.gov>
2024-08-26 15:28:35 +02:00
pauleonix
8c92836c39 cuda: add v12.6 (#45558) 2024-08-26 15:27:07 +02:00
Wouter Deconinck
a782e6bc33 r-googlesheets4: fix r-gargle dependency (#45980) 2024-08-26 14:37:00 +02:00
mvlopri
4ede0ae5e3 seacas: add parallel as a dependency (#45981) 2024-08-26 14:31:17 +02:00
Wouter Deconinck
986325eb0d r-pbkrtest: fix typo in dependency (#45997) 2024-08-26 14:25:01 +02:00
Wouter Deconinck
8bcd64ce6c r-diagram: fix dependency on non-existent R version (#46003) 2024-08-26 14:11:41 +02:00
Wouter Deconinck
f079ad3690 r-sf: deprecate unconcretizable 0.5-5 (#46016) 2024-08-26 14:10:25 +02:00
Juan Miguel Carceller
8c1d6188e3 gaudi: remove redundant dependency on cppgsl (#46029)
Co-authored-by: jmcarcell <jmcarcell@users.noreply.github.com>
2024-08-26 14:09:48 +02:00
Todd Gamblin
1d70ab934c ci generate: don't warn when no cdash config (#46004)
Right now if you run `spack ci generate` you get a warning about CDash credentials even
if there's no CDash configuration specified. We should only warn if there was actually a
CDash config.

Signed-off-by: Todd Gamblin <tgamblin@llnl.gov>
2024-08-26 13:58:41 +02:00
Kacper Kornet
fa704e867c polyml: add new package (#46020) 2024-08-26 13:42:30 +02:00
Kacper Kornet
85939b26ae mrbayes: readline and mpi variants are mutually exclusive (#46021) 2024-08-26 13:38:57 +02:00
Wouter Deconinck
a5436b3962 R: external detection (#46023)
Co-authored-by: wdconinc <wdconinc@users.noreply.github.com>
2024-08-26 13:37:35 +02:00
James Shen
a8e25193e0 root: patch v6.22.08 (#46019) 2024-08-26 13:16:25 +02:00
Wouter Deconinck
480d6f9911 cppunit: add v1.15.1; deprecate custom commit version (#46026) 2024-08-26 13:15:29 +02:00
Harmen Stoppels
02f329a8af compilers: avoid redundant fs operations and cache (#46031) 2024-08-26 12:49:58 +02:00
Wouter Deconinck
2de712b35f netfilter pkgs: avoid 3rd party urls, add latest official version (#46027)
Co-authored-by: wdconinc <wdconinc@users.noreply.github.com>
2024-08-26 12:41:11 +02:00
Wouter Deconinck
aa49b3d8ce lshw: add v02.20 (#46028) 2024-08-26 09:46:41 +02:00
Adam J. Stewart
eccecba39a Python: add v3.12.5, default to latest version (#45712)
Signed-off-by: Todd Gamblin <tgamblin@llnl.gov>
2024-08-25 18:49:01 -07:00
Harmen Stoppels
94c99fc5d4 variant.py: extract spec bits into spec.py (#45941) 2024-08-24 09:45:23 +02:00
John W. Parent
1f1021a47f PythonExtension: use different bin dir on Windows (#45427) 2024-08-24 09:34:24 +02:00
Harmen Stoppels
296e5308a7 mirror: fetch by digest (#45809)
Source mirrors store entries by digest and add a human readable alias of the
form 'name-version'. If no digest is available, the alias is used as the primary
storage location.

Spack erroneously fetches by alias when the digest path does not exist. This is
problematic if `version(..., sha256=...)` changes in package.py, and the mirror
is populated with the old shasum. That would result in an error when a digest
is available, but in case of git versions with a modified commit sha, the wrong
sources would be fetched without error. With this PR, only the digest path is
used, not the alias, in case a digest is available. This is also a small performance
optimization, as the number of request is halved for mirrors that don't contain
the sources.

Further, for git sources the tag was used as a digest, but this is a moving
target. Only commit sha is used now.

Also whenever the alias already existed, Spack used to keep it in place when
updating the mirror cache, which means that aliases would always point to
outdated mirror entries whenever digests are modified. With this PR the alias
is moved in place.

Lastly, fix a recent regression where `Stage.disable_mirrors` disabled mirrors
but not the local download cache, which was the intention.
2024-08-24 09:09:25 +02:00
Massimiliano Culpo
47e79c32fd Substitute __import__ with importlib.import_module (#45965) 2024-08-23 21:41:26 +02:00
David Gardner
906799eec5 add SuperLU_MT v4.0.1 (#45924) 2024-08-23 09:53:21 -07:00
kwryankrattiger
dcdcab7b2c VTK-m: Point to github mirror for source tarball (#45893)
* VTK-m: Point to github mirror for source tarball
  The gitlab.kitware.com source location seems to have intermittent
  network issues. Switching the to mirror hosted at Github may alleviate
  some of the timeouts.
* Update sha256 for GitHub tarballs

---------

Co-authored-by: Zack Galbreath <zack.galbreath@kitware.com>
2024-08-23 09:39:59 -07:00
snehring
86050decb9 gromacs: add env mods for cufftmp w/ gcc (#45887) 2024-08-23 09:37:38 -07:00
Stephen Nicholas Swatman
fff8165f2f davix: add versions 0.8.2-0.8.7 and dependencies (#45853)
* davix: add versions 0.8.2-0.8.7 and dependencies
  This commit adds new versions 0.8.2-0.8.7 of the davix package, and it
  also improves the handling of embedded packages. Davix will try to build
  libcurl from its own embedded version of that code, which doesn't mesh
  well with Spack's design philosophy, so I've changed the CMake
  configuration to disallow the builtin libcurl and use a Spack dependency
  instead. Up to version 0.8.7, RapidJSON was also builtin, but version
  0.8.7 allows users to specify that they want to use a pre-installed
  version of RapidJSON, so this commit also adds that as a dependency for
  versions 0.8.7:.
* Fix old versions
2024-08-23 09:35:48 -07:00
Wouter Deconinck
5a9dbcc0c4 ddt: add v23.0.4 -> v24.0.3 (#45861)
* ddt: add v23.0.4 -> v24.0.3
* ddt: fix url_for_version for 22.1.3

---------

Co-authored-by: Lydéric Debusschère <lyderic.de@gmail.com>
2024-08-23 09:12:42 -07:00
Adam J. Stewart
bd627465f3 py-autograd: mark numpy 2 compatibility (#45942)
* py-autograd: mark numpy 2 compatibility

* Fix syntax error
2024-08-23 09:08:15 -07:00
Stephen Nicholas Swatman
f96e8757b8 acts: add v36.0.0, v36.1.0 and fixes (#45874)
* acts: add v36.0.0, v36.1.0 and fixes

This commit makes several changes to the Acts repository, namely:

1. It adds versions 36.0.0 and 36.1.0.
2. It adds the traccc plugin and related dependencies.
3. It updates the version requirements of some dependencies.
4. It adds the Geant4 module of GeoModel.
5. It updates the C++ standard requirement.
6. It adds a new variant determining the scalar type to use.

This commit supercedes #45851. Thanks @jmcarcell for the version
updates; I have added you as co-author.

Co-authored-by: Juan Miguel Carceller <22276694+jmcarcell@users.noreply.github.com>

* Updates

* alphabetic cmake args

---------

Co-authored-by: Juan Miguel Carceller <22276694+jmcarcell@users.noreply.github.com>
2024-08-23 07:09:29 -06:00
Harmen Stoppels
b8cbbb8e2e spack create: add depends_on(<lang>) statements (#45296) 2024-08-23 10:33:05 +02:00
Harmen Stoppels
d40f847497 Add missing MultiMethodMeta metaclass in builders (#45879)
* Add missing MultiMethodMeta metaclass in builders

and remove the Python 2 fallback option in favor of hard errors to catch
similar issues going forward.

The fallback option can cause about 10K stat calls due to use of
`realpath` in the inspect module, depending on how deep Spack itself is
nested in the file system, which is ... undesirable.

* code shuffling to avoid circular import

* more reshuffling

* move reserved variant names into variants module
2024-08-23 09:23:25 +02:00
Wouter Deconinck
ed34dfca96 xrootd: change urls to xrootd.web.cern.ch (#45895)
* xrootd: change urls to xrootd.web.cern.ch
* xrootd: change homepage
2024-08-22 20:02:14 -06:00
Christopher Christofi
3ee6a5b96f py-ipykernel: add version 6.29.5 (#45876)
* py-ipykernel: add version 6.29.5
* add maintainers for spack package
2024-08-22 18:24:38 -07:00
Kyoko Nagahashi
88bcfddbbb New package: linux-external-modules (#45797) 2024-08-22 19:20:01 -06:00
Juan Miguel Carceller
c49269f9dd poppler: change the URL of the test repository (#45857)
* poppler: change the URL of the test repository
2024-08-22 18:03:28 -07:00
Adam J. Stewart
ef45c392e0 py-scipy: add v1.14.1 (#45847) 2024-08-22 18:00:57 -07:00
AMD Toolchain Support
8b811171c7 removing -Ofast with aocc (#45880)
Co-authored-by: shbhaska <shbhaska@amd.com>
2024-08-22 17:54:58 -07:00
Richard Berger
823a2c1e4b kokkos-tools: add new package (#45382) 2024-08-22 17:09:19 -07:00
Massimiliano Culpo
ead25b1e9e Add a new audit to find missing package.py files (#45868)
* Add a new audit to find missing package.py files

* Remove directory without package.py
2024-08-22 14:22:54 -07:00
Stephen Nicholas Swatman
d5eefcba87 llvm-amdgpu: Conflict with MacOS (#45633)
Currently, the llvm-amdgpu package doesn't compile on MacOS, but it is
also not marked as a conflict. This causes problems because it seems
that Spack is very happy to pull in llvm-amdgpu as the default package
to satisfy any virtual libllvm dependency, which can cause dependent
specs to fail to install on MacOS. This commit marks a conflict between
this llvm package and the Darwin platform.
2024-08-22 11:14:20 -06:00
Nicole C.
1bcb1fcebc Windows: port tests for mirror/blame (#45259) 2024-08-22 09:49:32 -07:00
John W. Parent
f19b657235 VTK package: patch to fix NetCDFC - HDF5 interface (#43087)
Patch from Windows is also needed on Linux
2024-08-22 09:48:13 -07:00
Stephen Nicholas Swatman
8e1bd9a403 root: remove +webgui~http conflict version clause (#45856)
* root: set +webgui~http conflict from @6.28.12:

Currently, the ROOT spec correctly identifies a conflict between +webgui
and ~http, but this conflict is marked as affecting @6.29.00: only. As a
matter of fact, ROOT 6.28.12 is also affected. This commit, therefore,
updates the when clause on the conflict to @6.28.12:.

* Remove when clause entirely

* oops
2024-08-22 08:14:09 -05:00
Stephen Nicholas Swatman
ba56622574 geomodel: fix bug in cmake_args (#45869) 2024-08-22 05:13:21 -06:00
Massimiliano Culpo
836be2364c Make spack compiler find use external find (#45784)
so that there is no duplicate detection logic for compilers
2024-08-22 12:13:08 +02:00
Juan Miguel Carceller
b623f58782 root: add version 6.32.04 (#45850)
Co-authored-by: jmcarcell <jmcarcell@users.noreply.github.com>
2024-08-21 16:43:48 -07:00
John W. Parent
182bc87fe1 Windows: Port icu4c; define cxx std flags for MSVC (#45547)
* Adds an MSBuild system + Builder to the icu4c package
* Adds custom install method as MSBuild system does not vendor an
  install target
* The cxxstd variant is not supported on Windows (there are no config
  options you use to tell the build system what cxx standard to
  build against), so the variant definition was updated to occur
  everywhere except Windows

Also, this commit defines the c/cxx..._flag properties of the MSVC
compiler (although they are not used by `icu4c` and not strictly
necessary to bundle with this PR).
2024-08-21 16:08:57 -06:00
Stephen Nicholas Swatman
f93595ba2f acts: add GeoModel dependency (#45859)
This commit adds a dependency on GeoModel 4.6.0 when the GeoModel plugin
is enabled. Note that the dependency is upgraded to 6.3.0 in Acts
36.1.0, but that will need to be covered in #45851.
2024-08-21 11:27:54 -06:00
Adam J. Stewart
aa5b17ceb5 py-shapely: add v2.0.6 (#45833) 2024-08-21 09:47:24 -07:00
Dom Heinzeller
eb5a1d3b4c Add fms@2024.02 (#45838) 2024-08-21 09:44:40 -07:00
Wouter Deconinck
84f680239e geoip: deprecate due to duplication (#45840)
* geoip: deprecate due to duplication
* geoip-api-c: fixed hashes; checked license; verified c code

---------

Co-authored-by: wdconinc <wdconinc@users.noreply.github.com>
2024-08-21 09:42:54 -07:00
Stephen Nicholas Swatman
c7b693a0df geomodel: add versions 5.1.0-6.4.0 (#45858)
* geomodel: add versions 5.1.0-6.4.0

This PR adds new versions 5.1.0 through 6.4.0 of the geomodel package.
It also updates the CMake configuration to use the `define_from_variant`
mechanism and it adds me as a maintainer.

* Undo cmake change
2024-08-21 10:41:36 -06:00
Alex Seaton
7d5ad18573 heyoka: add v5.1.0 (#45841) 2024-08-21 09:30:01 -07:00
Stephen Herbener
2921e04353 Added latest version of eckit (#45834) 2024-08-21 09:01:54 -07:00
Massimiliano Culpo
33464a7038 gcc: simplify version_regex, change string to filter out Apple clang (#45852) 2024-08-21 16:36:07 +02:00
Juan Miguel Carceller
d3cdb2a344 sherpa: add v3.0.0, remove deprecated @:2.2.10 (#45101)
* Remove deprecated versions

* Add sherpa 3.0.0 and CMake builds

* Address comments in #45101

* Add builder classes for cmake and autotools

---------

Co-authored-by: jmcarcell <jmcarcell@users.noreply.github.com>
2024-08-21 08:41:18 -05:00
Massimiliano Culpo
34df21b62c gcc: restore old detection (#45810) 2024-08-21 11:31:52 +02:00
Wouter Deconinck
e8a13642a0 packages/*: http -> https where permanent redirect (#45835)
* *: http -> https where permanent redirect

* fix: style
2024-08-21 09:18:24 +02:00
Lin Guo
dc3c96dd2f orca: add 6.0.0 avx2 version (#45824)
The avx2 version can be downloaded from the ORCA [forum](https://orcaforum.kofo.mpg.de/app.php/dlext/?view=detail&df_id=214#).

The version is named `avx2-6.0.0` (as opposed to the more
natural-looking `6.0.0-avx2`) to avoid the avx2 version shadowing the
non-avx2 one. Definitely open for better suggestion.
2024-08-20 18:41:30 -07:00
Victor Brunini
c29652580a arborx: Enable use of Kokkos from Trilinos for cuda/rocm. (#45220) 2024-08-20 15:48:42 -07:00
Matt Thompson
d714a9b223 mapl: add 2.47.2, 2.46.3 (#45795) 2024-08-20 13:10:09 -07:00
Marcel Koch
f596a8cdad ginkgo: add v1.8.0 (#45791)
* bump[Ginkgo]: add version 1.8.0
* [Ginkgo] add patch for rocthrust
* [Ginkgo] change maintainer
* [Ginkgo] use patch from PR
* [Ginkgo] fix style issues

---------

Co-authored-by: Terry Cojean <terry.cojean@kit.edu>
2024-08-20 09:36:51 -07:00
Vicente Bolea
3699a0ec9b paraview: add new v5.13.0-RC2 release (#45754) 2024-08-20 10:52:35 -05:00
Vicente Bolea
6c268234ba paraview: add smoke tests (#45759) 2024-08-20 10:46:45 -05:00
Greg Becker
c1736077bb spack bootstrap status --dev: function call for new interface (#45822) 2024-08-20 13:04:39 +00:00
psakievich
85905959dc Increase min version for sparse_checkout (#45818)
* Increase min version for sparse_checkout

* Update git_fetch.py

* style
2024-08-20 13:04:23 +00:00
Harmen Stoppels
2ae5596e92 Unify url and oci buildcache push code paths (#45776) 2024-08-20 13:17:49 +02:00
Sajid Ali
9d0b9f086f Fix linking for python with external ncurses (#45803)
Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>
2024-08-20 06:09:55 +02:00
Mikael Simberg
da079ed06f ninja: add 1.12.1 (#45789) 2024-08-19 17:14:13 -06:00
Fernando Ayats
a69c5b3e32 freefem: add v4.13, v4.12 and v4.11 (#45808) 2024-08-19 13:21:10 -07:00
Massimiliano Culpo
e3cce2bd96 binutils: add v2.43.1 (#45806) 2024-08-19 13:40:51 -06:00
AcriusWinter
0d668e4e92 hsakmt-roct: remove use of deprecated run_test method (#45763)
* hsakmt-roct: new test API
* hsakmt-roct: minor change to check_install script variable name

---------

Co-authored-by: Tamara Dahlgren <35777542+tldahlgren@users.noreply.github.com>
2024-08-19 12:20:54 -07:00
David Gardner
ad6c7380c5 silo: add python variant (#45757)
* add python variant

* use enable_or_disable

* use extend
2024-08-19 10:56:44 -07:00
Adam J. Stewart
c064a30765 py-numpy: add v2.1.0 (#45807) 2024-08-19 10:25:37 -07:00
AcriusWinter
4a4f156d99 parallel-netcdf: new test API (#45170)
* parallel-netcdf: new test API
* parallel-netcdf: fix test args and tweak docstring and variables

---------

Co-authored-by: Tamara Dahlgren <dahlgren1@llnl.gov>
2024-08-19 09:39:42 -07:00
AcriusWinter
cb8878aaf4 hipsolver: remove use of deprecated run_test method (#45761)
* hipsolver: new test API
2024-08-19 09:38:19 -07:00
Vicente Bolea
d49f3a0960 diy: add smoke test (#45749)
Installing examples for running smoke tests for the DIY project.
2024-08-19 11:04:09 -05:00
Massimiliano Culpo
15413c7258 llvm based compilers: filter out non-compilers (#45805) 2024-08-19 09:28:37 -06:00
Teague Sterling
de754c7a47 perl-bio-bigfile: new package (#44505)
* Adding the perl-bio-db-bigfile package

* Update package.py

* Update package.py

* Update package.py

* Updating dependent package handling

Signed-off-by: Teague Sterling <teaguesterling@gmail.com>

* Updating dependent package handling

Signed-off-by: Teague Sterling <teaguesterling@gmail.com>

* Reverting variants

Signed-off-by: Teague Sterling <teaguesterling@gmail.com>

* Rename package.py to package.py

* Update package.py

* Removing unneeded dependencies

Signed-off-by: Teague Sterling <teaguesterling@gmail.com>

---------

Signed-off-by: Teague Sterling <teaguesterling@gmail.com>
2024-08-19 16:14:49 +01:00
Harmen Stoppels
ac9398ed21 build_environment: explicitly disable ccache if disabled (#45275) 2024-08-19 13:49:38 +02:00
Harmen Stoppels
57769fac7d Simplify URLFetchStrategy (#45741) 2024-08-19 11:34:13 +02:00
Wouter Deconinck
c65fd7e12d apfel: add v3.1.1 (now CMakePackage) (#45661)
Co-authored-by: wdconinc <wdconinc@users.noreply.github.com>
Co-authored-by: Massimiliano Culpo <massimiliano.culpo@gmail.com>
2024-08-19 10:45:49 +02:00
snehring
c71d778875 salmon: add v1.10.3 (#45695)
Signed-off-by: Shane Nehring <snehring@iastate.edu>
2024-08-19 10:38:56 +02:00
Luke Robison
a7313dc407 WRF: add -fpermissive when using gcc@14: (#45438) 2024-08-19 10:30:18 +02:00
Wouter Deconinck
31477d5dc7 activeharmony: replace dead links (#45704) 2024-08-19 10:28:57 +02:00
Wouter Deconinck
382ba0d041 mlpack: add through v4.4.0 (#45707) 2024-08-19 10:26:10 +02:00
Adam J. Stewart
886c950423 py-keras: add v3.5 (#45711) 2024-08-19 10:11:08 +02:00
Matthias Wolf
3798b16a29 py-brain-indexer: new package (#44718) 2024-08-19 10:09:43 +02:00
Matt Thompson
796617054d py-pyyaml: add v6.0.2 (#45716) 2024-08-19 10:05:39 +02:00
Pranav Sivaraman
78fc25ec12 magic-enum: fix minimum compiler versions conflicts (#45705) 2024-08-19 10:04:09 +02:00
Wouter Deconinck
6de51fdc58 librsvg: depends_on cairo +png (#45729) 2024-08-19 09:55:28 +02:00
snehring
430ba496d1 liftoff: add new package (#45726)
Signed-off-by: Shane Nehring <snehring@iastate.edu>
2024-08-19 09:48:47 +02:00
Wouter Deconinck
e1ede9c04b bind9: add v9.18.28, v9.20.0 (#45728) 2024-08-19 09:47:16 +02:00
Wouter Deconinck
856dd3417b gradle: add through v8.9 (#45731) 2024-08-19 09:44:45 +02:00
Wouter Deconinck
e49c6f68bc maven: add v3.8.8, v3.9.8 (#45732) 2024-08-19 09:44:00 +02:00
Alex Leute
eed7a1af24 mlc-llm: new package and dependency (#44726) 2024-08-19 09:33:00 +02:00
Rocco Meli
22e40541c7 CP2K: add 2024.2, fix dbcsr+g2g+plumed (#45614) 2024-08-19 09:19:17 +02:00
Wouter Deconinck
8561c89c25 hadoop: add v3.3.3 -> v3.4.0 (#45735) 2024-08-19 09:05:26 +02:00
dslarm
6501705de2 armpl-gcc - finish enabling debian12 (#45744) 2024-08-19 09:01:09 +02:00
Wouter Deconinck
0b3e1fd412 openssh: add v9.8p1 (#45736)
Co-authored-by: wdconinc <wdconinc@users.noreply.github.com>
2024-08-19 08:52:09 +02:00
Wouter Deconinck
c260da5127 shared-mime-info: fix url for certificate name mismatch (#45779) 2024-08-19 08:42:03 +02:00
Wouter Deconinck
f63261dc65 ghostscript: add v10.01.2, v10.02.1, v10.03.1 (#45780) 2024-08-19 08:40:56 +02:00
Wouter Deconinck
1c081611ea graphviz: add v8.1.0 -> v12.1.0 (#45675) 2024-08-19 08:33:02 +02:00
Alec Scott
428b4e340a Remove deprecated --safe-only in spack version cmd (#45765) 2024-08-19 08:28:19 +02:00
Wouter Deconinck
20bf239a6a xorg-server: add variants dri and glx (#45787)
Co-authored-by: wdconinc <wdconinc@users.noreply.github.com>
2024-08-19 08:07:56 +02:00
Massimiliano Culpo
cd682613cf dbcsr: avoid using a set in a message (#45804) 2024-08-19 07:35:33 +02:00
Axel Huebl
c1852e3706 WarpX: Python on pyAMReX (#45251)
* WarpX: Python on pyAMReX

Long overdue update for WarpX: in 2024, we updated our Python
bindings to rely on the new pyAMReX package. This deprecates the old
`py-warpx` package and adds a new dependency and variant to WarpX.

Also deprecates old versions that we will not continue to support.

* Update Cloud/E4S Pipelines for WarpX

`py-warpx` is replaced by `warpx +python`
oneAPI does not support IPO/LTO: diable for `py-amrex` even though
pybind11 strongly encourages it.
2024-08-18 21:14:04 -07:00
Rémi Lacroix
855a8476e4 Scotch: Fix sha256 for some older versions. (#44494)
Most likely caused by a change in Inria's Gitlab.
2024-08-18 21:18:00 +02:00
Auriane R.
d4a892f200 py-torch-nvidia-apex: Add 24.04.01 and variants from the readme (#45019)
Co-authored-by: Bernhard Kaindl <bernhardkaindl7@gmail.com>
2024-08-18 21:16:58 +02:00
Harmen Stoppels
66e2836ba1 py-torchaudio: upperbound on cuda (#45773)
* py-torchaudio: upperbound on cuda

* actually get bound right

* make adam happy
2024-08-17 11:18:32 -06:00
Teague Sterling
52ab0c66fe xorgproto: new package (#45569)
* xorgproto: new package

Signed-off-by: Teague Sterling <teaguesterling@gmail.com>

* adding providers for xorgprotos

Signed-off-by: Teague Sterling <teaguesterling@gmail.com>

* Update var/spack/repos/builtin/packages/xorgproto/package.py

Co-authored-by: Wouter Deconinck <wdconinc@gmail.com>

* Update etc/spack/defaults/packages.yaml

Co-authored-by: Wouter Deconinck <wdconinc@gmail.com>

* Update etc/spack/defaults/packages.yaml

Co-authored-by: Wouter Deconinck <wdconinc@gmail.com>

* Update var/spack/repos/builtin/packages/xorgproto/package.py

Co-authored-by: Wouter Deconinck <wdconinc@gmail.com>

* Update var/spack/repos/builtin/packages/xorgproto/package.py

Co-authored-by: Wouter Deconinck <wdconinc@gmail.com>

* Update var/spack/repos/builtin/packages/xorgproto/package.py

Co-authored-by: Wouter Deconinck <wdconinc@gmail.com>

* Update var/spack/repos/builtin/packages/xorgproto/package.py

Co-authored-by: Wouter Deconinck <wdconinc@gmail.com>

* [@spackbot] updating style on behalf of teaguesterling

* xorgproto: depends_on meson type build

---------

Signed-off-by: Teague Sterling <teaguesterling@gmail.com>
Co-authored-by: Wouter Deconinck <wdconinc@gmail.com>
2024-08-17 10:24:28 -06:00
Stephen Hudson
f316068b27 libEnsemble: add v1.4.2 (#45760) 2024-08-17 08:25:00 -05:00
Wouter Deconinck
553cc3b70a util/web.py: parse new GitLab JS dropdown links (#45764)
Co-authored-by: Harmen Stoppels <harmenstoppels@gmail.com>
2024-08-17 09:02:03 +02:00
Chris Marsh
f0f9a16e4f esmf package: add (optional) Python bindings (#45504)
* Add `+python` variant
* `esmf` package installs Python bindings when `+python` is set

Note: this does not inherit `PythonPackage`, which force an either/or
choice between the Makefile and Pip builder: it instantiates a
`PythonPipBuilder` as needed (when `+python` is set).
2024-08-16 15:02:50 -07:00
Greg Becker
9ec8eaa0d3 include_concrete: read from older env formats properly (#45766)
* include_concrete: read from older env formats properly
* spack env rm: fix logic for checking env includes
* regression test

Signed-off-by: Todd Gamblin <tgamblin@llnl.gov>
2024-08-16 20:40:41 +00:00
Adam J. Stewart
00182b19dc GDAL: add v3.9.2 (#45794) 2024-08-16 13:26:35 -07:00
James Smillie
cc7a29c55a Windows: fix stage cleaning for long paths (#45786)
Paths over 260 characters in length are not handled by `shutil.rmtree`
unless they use the extended-length path syntax (using a prefix of
"\\?\").

This fixes an issue where stage cleaning fails when paths in a stage
exceed the normal 260-character limit.

This indicates that other parts of the codebase should be examined/
refactored to handle long paths.
2024-08-16 11:16:13 -07:00
eugeneswalker
61b0f4f84d e4s ci: add wrf (#45719)
* e4s ci: add wrf

* e4s ci: also add wrf companion/adjacent package wps

* e4s oneapi: comment out wps: %oneapi not supported?
2024-08-16 09:57:46 -07:00
Massimiliano Culpo
fe3bfa482e Run unit test in parallel again in CI (#45793)
The --trace-config option was failing for linux unit-tests,
so we were running serial.
2024-08-16 16:11:08 +00:00
Paul R. C. Kent
e5f53a6250 py-lxml: add v5.2.2 (#45785)
* add v5.2.2

* py-lxml dependency improvements

Co-authored-by: Wouter Deconinck <wdconinc@gmail.com>

---------

Co-authored-by: Wouter Deconinck <wdconinc@gmail.com>
2024-08-16 10:04:29 -06:00
bk
a7e8080784 harfbuzz: enable freetype in MesonBuilder (#45654)
* harfbuzz: enable freetype in MesonBuilder to facilitate depends_on("freetype")

* spack style fix

* freetype is defined as a depends_on(), so set as enabled in MesonBuilder rather than an option/flag/variant

* add back depends_on($lang) lines for new test api

* keep original order
2024-08-16 10:59:27 -05:00
Wouter Deconinck
f5e934f2dc *: avoid js redirect for homepages on sourceforge (#45783) 2024-08-16 17:35:04 +02:00
Harmen Stoppels
54b57c5d1e Revert "Change environment modifications to escape with double quotes (#36789)" (#42780)
This reverts commit 690394fabc, as it causes arbitrary code execution.
2024-08-16 17:32:48 +02:00
Harmen Stoppels
725ef8f5c8 oci: support --only=package (#45775)
Previously `spack buildcache push --only=package` errored in the OCI
case, but it's been requested that OCI can be used as pure storage w/o
the need for runnable container images.

This commit makes it so that

1. manifests refer only to runtime dependencies that were selected to be
   pushed
2. failure to upload a blob among the selected specs does not prevent a
   manifest/tag to be created for dependents: they just don't refer to
   the missing blob as a layer/dependency

This fixes the following issues:

1. dependents of non-redistributable specs can now be pushed to oci
   build caches without error
2. failure to upload one tarball does not cause cascading failures for
   dependents whose tarballs do upload succesfully -- so it's better
   best-effort behavior
3. for some people uploading with deps caused a massive amount of
   fetches of their manifests (which certain registries count as a
   download of an image, even though their layers are not fetched) --
   being able to specify --only=package reduces the number of fetches.
2024-08-16 15:24:04 +02:00
Harmen Stoppels
f51a9a9107 stage: provide mirrors in constructor (#45792)
Stage objects create mirrors ad-hoc from current config.

- There is no way to prevent mirrors from being used
- There is no way to restrict mirrors to source/binary, which is of
  course context dependent.
- Stage is also used in build caches, where iterating over mirrors is
  already implemented differently, and wouldn't work anyways cause it's
  source only, and in particular it makes no sense for OCI build caches.

This commit:

1. Injects the sensible mirrors into the stage object from contexts
   where it is relevant
2. Separates mirrors from cache, so that w/o mirrors download cache can
   still be used
2024-08-16 15:21:47 +02:00
Massimiliano Culpo
4f0e336ed0 Remove "test_foreground_background" 2024-08-16 14:22:59 +02:00
Massimiliano Culpo
64774f3015 Skip test_foreground_background + other minor cleanups
The test_foreground_background unit test has been marked
xfail for a while, meaning:
- Nobody looks at the results of the test
- It still runs every time

That test happens to hang frequently on some Apple M1 I have access to,
so here I mark it as skip.

Also went through other xfailing and skipped tests, and applied minor changes.
2024-08-16 14:22:59 +02:00
Massimiliano Culpo
4e9fbca033 Clean up test/cmd/ci.py (#45774)
* Use absolute paths instead of https:// fake mirrors (this speed-up tests by avoiding requests)
* Add a fixture to gather in a single place code that is copy/pasted in a lot of tests
* General clean-up of tests and repeated code

Co-authored-by: Harmen Stoppels <me@harmenstoppels.nl>
2024-08-16 13:42:01 +02:00
AcriusWinter
a2fd26bbcc rccl: new test API (#45241)
* rccl: new test API
* rccl: stand-alone test docstring tweak

---------

Co-authored-by: Tamara Dahlgren <35777542+tldahlgren@users.noreply.github.com>
2024-08-15 22:03:05 -06:00
AcriusWinter
067da09b46 hypre: get rid of use of deprecated run_test method (#45762)
* hypre: get rid of depreciated run_test method
* hypre: use mkdirp directly
* hypre: use install() for ij for addition of permissions fix

---------

Co-authored-by: Tamara Dahlgren <35777542+tldahlgren@users.noreply.github.com>
2024-08-15 20:37:39 -06:00
AcriusWinter
b1b0c108bb parsec: old to new test API (#45122)
* parsec: old to new test API
* parsec: restore stand-alone test subparts; preliminary test build fixes

---------

Co-authored-by: Tamara Dahlgren <dahlgren1@llnl.gov>
2024-08-15 18:22:55 -06:00
AcriusWinter
c624088a7b n2p2: convert from old to new test API (#45141)
* n2p2: convert from old to new test API
* n2p2: Enhance stand-alone testing checks to reduce unnecessary processing

---------

Co-authored-by: Tamara Dahlgren <dahlgren1@llnl.gov>
2024-08-15 15:47:55 -06:00
AcriusWinter
a965c7c5c8 Open3d: Reinstate re-use of stand-alone test method (#45755)
* open3d: Reinstate re-use of stand-alone test method
* open3d: ignore test_open3d_import when ~python

---------

Co-authored-by: Tamara Dahlgren <35777542+tldahlgren@users.noreply.github.com>
2024-08-15 13:52:31 -07:00
Greg Sjaardema
904d43f0e6 seacas: new version (#45777)
Update fmt dependency to support fmt@11:
Use an adios2 release instead of master
New release of seacas
2024-08-15 15:21:26 -05:00
AcriusWinter
10b6d7282a Cache extra test sources update (#45493)
* stand-alone test API update: self.cache_extra_test_sources(...) -> cache_extra_test_sources(self, ...)
* superlu: switch to new cache_extra_test_sources API

---------

Co-authored-by: Tamara Dahlgren <dahlgren1@llnl.gov>
2024-08-15 12:55:16 -06:00
Richard Berger
7112a49d1e libmesh: explicitly disable metis in ~metis case (#45781) 2024-08-15 11:28:21 -07:00
Mikael Simberg
b11bd6b745 pika: add 0.27.0 (#45772) 2024-08-15 11:11:19 -07:00
Derek Ryan Strong
4d0b04cf34 hwloc: add v2.11.1 (#45767)
* Add hwloc v2.11.1
2024-08-15 11:10:10 -07:00
Massimiliano Culpo
165c171659 Update archspec to v0.2.5-dev (7e6740012b897ae4a950f0bba7e9726b767e921f) (#45721) 2024-08-15 19:49:07 +02:00
David Gardner
aa3c62d936 limit patch range (#45756) 2024-08-15 15:08:24 +02:00
Alex Richert
cba2fe914c g2: add 3.5.0 and 3.5.1 (#45750) 2024-08-14 23:43:40 -06:00
psakievich
1b82779087 Add options for sparse checkout in GitFetcher (#45473)
* Add options for sparse checkout in GitFetcher

Newer versions of git have a beta feature called sparse checkout
that allow users to check out a portion of a large repo.

This feature will be ideal for monolithic repo projects that want to
model their infrastructure via spack.  This PR implements an addition
to the GitFetcher that allows users to add a `git_sparse_paths`
attribute to package classes or versions which will then use sparse
checkout on those directories/files for the package.

* Style

* Split git clone into multiple functions

* Add sparse-checkout impl

* Internalize src clone functions

* Docs

* Adding sparse clone test

* Add test for partial clone

* [@spackbot] updating style on behalf of psakievich

* Small fixes

* Restore default branch status

* Fix attributes for package

* Update lib/spack/docs/packaging_guide.rst

Co-authored-by: Matthew Mosby <44072882+mdmosby@users.noreply.github.com>

* Extend unit test to multiple git versions

* style

---------

Co-authored-by: psakievich <psakievich@users.noreply.github.com>
Co-authored-by: Matthew Mosby <44072882+mdmosby@users.noreply.github.com>
2024-08-15 05:28:34 +00:00
Evan Parker
55b1b0f3f0 py-fortranformat: update to version 2.0.0 (#45748)
* Feature update py-fortranformat
  Add more recent versions of py-fortranformat. The currently included release (0.2.5) is from 2014. I've added the latest point release of each of the major versions from the last 4 years.
* update homepage
2024-08-14 23:14:02 -06:00
AcriusWinter
4606c8ed68 magma: old to new test API (#45140)
* magma: old to new test API
* magma: simplify stand-alone test method/part docstrings/purposes 

---------

Co-authored-by: Tamara Dahlgren <35777542+tldahlgren@users.noreply.github.com>
2024-08-14 19:37:12 -06:00
AcriusWinter
dd53eeb322 libpressio: old to new test API (#45151)
* libpressio: old to new test API
* libpressio: minor stand-alone test simplifications

---------

Co-authored-by: Tamara Dahlgren <35777542+tldahlgren@users.noreply.github.com>
2024-08-14 15:59:08 -07:00
Greg Becker
f42486b684 spack info: use spec fullname (#45753) 2024-08-14 22:00:00 +00:00
Alex Richert
44ecea3813 g2tmpl: add 1.13.0 (#45751) 2024-08-14 15:25:57 -06:00
eugeneswalker
f1114858f5 e4s ci: add chapel (#45659)
* e4s ci: add chapel
* e4s ci: fix gpu target typo

Co-authored-by: Tamara Dahlgren <35777542+tldahlgren@users.noreply.github.com>

---------

Co-authored-by: Tamara Dahlgren <35777542+tldahlgren@users.noreply.github.com>
2024-08-14 09:54:07 -07:00
Greg Becker
2b6bdc7013 OneapiPackage: do not use getpass.getuser (#45727)
* OneapiPackage: do not use getpass.getuser
2024-08-14 09:48:44 -07:00
Massimiliano Culpo
586a35be43 SpecHashDescriptor: better repr in debugger (#45739) 2024-08-14 18:02:09 +02:00
Fernando Ayats
7a8dc36760 freefem: add v4.14 (#45687) 2024-08-14 08:49:04 -07:00
afzpatel
e01151a200 enable asan in remaining rocm packages (#45192)
* initial commit to enable asan in remaining rocm packages
* remove os import
* add rocm-opencl rocm-dbgapi rocm-debug-agent
* add libclang path to LD_LIBRARY_PATH
* enable asan for rocfft
* add f-string and add +asan dependencies for hip and rocm-opencl
* add conflicts for centos7/8 and rhel 9
2024-08-14 08:46:04 -07:00
Harmen Stoppels
29b50527a6 spack buildcache push: parallel in general (#45682)
Make spack buildcache push for the non-oci case also parallel, and --update-index more efficieny
2024-08-14 17:19:45 +02:00
Massimiliano Culpo
94961ffe0a Optimize marshaling of Repo and RepoPath (#45742)
When sending Repo and RepoPath over to a child process,
we go through a marshaling procedure with pickle. The
default behavior for these classes is highly inefficient,
as it serializes a lot of specs that can just be
reconstructed on the other end of the pipe.

Here we write optimized procedures to __reduce__ both
classes.
2024-08-14 14:34:35 +02:00
Massimiliano Culpo
03a7da1e44 Micro-optimize finding executables (#45740) 2024-08-14 13:52:28 +02:00
Massimiliano Culpo
97ffe2e575 Add schema for compiler options in packages.yaml (#45738) 2024-08-14 11:47:36 +02:00
Harmen Stoppels
7b10aae356 Show underlying errors on fetch failure (#45714)
- unwrap/flatten nested exceptions
- improve tests
- unify curl lookup
2024-08-14 08:15:15 +00:00
AcriusWinter
b61cd74707 raja: new test API (#45184)
* raja: new test API
* raja: tweak test method names and docstrings
* raja: restore running tests under proper directory
* raja: cleanup skiptest message and example call
* raja: Tweak expected outputs to match current
* raja: test_views -> test_stencil_offset_layout

---------

Co-authored-by: Tamara Dahlgren <35777542+tldahlgren@users.noreply.github.com>
2024-08-13 21:36:14 -06:00
Adam J. Stewart
374d94edf7 py-matplotlib: add v3.9.2 (#45710) 2024-08-13 22:15:00 -05:00
dependabot[bot]
827522d825 build(deps): bump docker/build-push-action from 6.6.1 to 6.7.0 (#45730)
Bumps [docker/build-push-action](https://github.com/docker/build-push-action) from 6.6.1 to 6.7.0.
- [Release notes](https://github.com/docker/build-push-action/releases)
- [Commits](16ebe778df...5cd11c3a4c)

---
updated-dependencies:
- dependency-name: docker/build-push-action
  dependency-type: direct:production
  update-type: version-update:semver-minor
...

Signed-off-by: dependabot[bot] <support@github.com>
Co-authored-by: dependabot[bot] <49699333+dependabot[bot]@users.noreply.github.com>
2024-08-13 18:03:26 -06:00
Tamara Dahlgren
8ba6e7eed2 Bugfix: allow test_* build-time and stand-alone tests (#45699) 2024-08-13 16:58:00 -07:00
AcriusWinter
e40c10509d mptensor: Changed skiptest, test name, and added docstring (#44909)
* mptensor: Changed skiptest, test name, and added docstring
* mptensor: make stand-alone test method name and docstring more specific

---------

Co-authored-by: Tamara Dahlgren <35777542+tldahlgren@users.noreply.github.com>
2024-08-13 17:48:25 -06:00
Sakib Rahman
21a2c3a591 py-htgettoken: add v2.0-2 (#45688)
* Add version 2.0.-2

* Newer version at the top

* [@spackbot] updating style on behalf of rahmans1

* py-htgettoken: reorder comments

* Use sha256sum instead of commit id for version 2.0-2 and above

---------

Co-authored-by: rahmans1 <rahmans1@users.noreply.github.com>
Co-authored-by: Wouter Deconinck <wdconinc@gmail.com>
2024-08-13 14:39:51 -06:00
Chris Marsh
70eb7506df Add py-dask and py-distributed 2024.7.1 (#45546)
* Add dask 2024.3 and distributed 2024.7

* [@spackbot] updating style on behalf of Chrismarsh

---------

Co-authored-by: Chrismarsh <Chrismarsh@users.noreply.github.com>
2024-08-13 14:27:47 -05:00
Massimiliano Culpo
2b95eecb83 Improve external detection tests for compilers (#45709)
Extracted from #44419

This adds / modifies some external detection tests for compilers,
to reproduce cases that are currently tested in unit tests.

The unit tests will later be removed.
2024-08-13 18:37:54 +02:00
Fernando Ayats
df8507f470 bigdft : add v1.9.5 (#45270) 2024-08-13 09:25:34 -07:00
Ganesh Vijayakumar
645c8eeaeb Update OpenFAST package.py (#45706)
Mandating build of C++ driver program whenever "cxx" option is used. Necessitated by recent change to OpenFAST https://github.com/OpenFAST/openfast/blob/dev/glue-codes/openfast-cpp/CMakeLists.txt#L60
2024-08-13 08:04:04 -06:00
Harmen Stoppels
b693987f95 cuda: drop preference (#45130) 2024-08-13 14:17:54 +02:00
BOUDAOUD34
7999686856 siesta: add v4.1.5, v5.0.0 and v5.0.1, add variants and build v5 using cmake (#45518)
Co-authored-by: Bernhard Kaindl <bernhardkaindl7@gmail.com>
2024-08-13 12:10:22 +02:00
Massimiliano Culpo
7001a2a65a Fix a bug with automatic tag detection (#45696)
Extracted from #45638

When adding the "detectable" tag to a package class that has the
"tag" attribute inherited from a base class, we need to copy it to
avoid modifying the base class.
2024-08-13 10:19:26 +02:00
Kaan
7c985d6432 Intel OneAPI Codeplay Plugin for NVIDIA GPU Offload (#45655)
* kickoff attempt

* resource similar to fortran

* delete unused install_component_codeplay

* Adding conflict for versions <= 2022.2.1, moving install to package.py, adding sha256 for version 2024.2.1

* [@spackbot] updating style on behalf of kaanolgu

---------

Co-authored-by: Kaan Olgu <kaan.olgu@bristol.ac.uk>
2024-08-13 08:40:35 +01:00
Harmen Stoppels
a66586d749 spack buildcache push: best effort (#45631)
"spack buildcache push" for partially installed environments pushes all it 
can by default, and only dumps errors towards the end.

If --fail-fast is provided, error out before pushing anything if any
of the packages is uninstalled

oci build caches using parallel push now use futures to ensure pushing
goes in best-effort style.
2024-08-13 08:12:48 +02:00
AcriusWinter
6b73f00310 migraphx: Old to new test API (#44988)
* migraphx: Old to new test API
* migraphx: tweak name and docstring to be more descriptive

---------

Co-authored-by: Tamara Dahlgren <35777542+tldahlgren@users.noreply.github.com>
2024-08-12 19:29:25 -06:00
Harmen Stoppels
063b987ceb remove config:concretizer:clingo (#45684) 2024-08-12 18:23:14 -07:00
AcriusWinter
fe19394bf9 py-amrex: old to new test API (#45183)
* py-amrex: test name change
2024-08-12 16:56:51 -07:00
Matt Thompson
e09955d83b mepo: Add 2.0.0 (#45691) 2024-08-12 16:54:48 -06:00
Brian Spilner
d367f14d5e add cdo-2.4.1 and cdo-2.4.2 (#45686) 2024-08-12 16:24:06 -06:00
Henri Menke
6f61e382da etsf-io: use pic flag when compiling (#45646) 2024-08-12 16:23:36 -06:00
AcriusWinter
63e680e4f9 c: new test API (#45469)
* c: new test API
* gcc:  provides('c')
* c: bugfix and simplification of the new stand-alone test method

---------

Co-authored-by: Tamara Dahlgren <dahlgren1@llnl.gov>
2024-08-12 15:58:09 -06:00
Nicole C.
27557a133b debug: Update cmd and test for Windows (#45309)
* debug: Update cmd and test for Windows

* Add comment tar options not supported by Win tar
2024-08-12 15:50:51 -04:00
dslarm
78810e95ed acfl, armpl-gcc: use ubuntu-22.04 as target for Debian 12 (#45524) 2024-08-12 13:21:40 -06:00
Wouter Deconinck
553b44473f aspell: add v0.60.8.1 (#45685) 2024-08-12 11:38:00 -07:00
Harmen Stoppels
966a775a45 re2: fix cmake cxx std (#45694) 2024-08-12 18:58:02 +02:00
Mikael Simberg
327c75386a mold: add 2.33.0 (#45680) 2024-08-12 07:08:33 -06:00
Cédric Chevalier
a2cb7ee803 Kokkos: only requires a C++ compiler (#45467)
Signed-off-by: Cédric Chevalier <cedric.chevalier@cea.fr>
2024-08-12 06:38:13 -06:00
Wouter Deconinck
2a5d4b2291 cli11: add v2.4.2 (#45673) 2024-08-12 05:07:59 -06:00
Harmen Stoppels
3b59817ea7 deal with TimeoutError from ssl.py (#45683) 2024-08-12 13:06:13 +02:00
Wouter Deconinck
06eacdf9d8 xterm: add v393 (#45678) 2024-08-12 04:27:49 -06:00
Till Ehrengruber
bfdcdb4851 cutensor: add v2.0.1.2 on aarch64 (#45138) 2024-08-12 12:07:53 +02:00
Filippo Spiga
83873d06a1 jube: add v2.6.2, v2.7.0, v2.7.1 (#45599) 2024-08-12 11:59:59 +02:00
G-Ragghianti
91333919c6 SLATE package: make MPI and OpenMP a requirement (#44979)
Co-authored-by: gragghia <gragghia@BlackM3.local>
2024-08-12 11:54:41 +02:00
Melven Roehrig-Zoellner
cd6237cac4 py-pyside2: add version 5.15.14 (#44634)
Co-authored-by: Massimiliano Culpo <massimiliano.culpo@gmail.com>
2024-08-12 11:44:28 +02:00
Derek Ryan Strong
91412fb595 openmpi: restrict versions for launcher variants (#45624) 2024-08-12 11:40:02 +02:00
Adam J. Stewart
678c995415 PyTorch: update ecosystem (#45431) 2024-08-12 11:33:27 +02:00
Wouter Deconinck
63af548271 runc: add v1.1.13 (#45679) 2024-08-12 03:33:11 -06:00
Adam J. Stewart
200dfb0346 giflib: fix build on macOS (#45643) 2024-08-12 11:30:45 +02:00
Adam J. Stewart
e2f605f6e9 GDAL: clarify compiler version support (#45651) 2024-08-12 11:27:48 +02:00
Wouter Deconinck
3cf1914b7e py-avro: add v1.11.3, v1.12.0 (#45677) 2024-08-12 03:17:50 -06:00
Wouter Deconinck
cd7a49114c embree: add v4.3.3 (#45674) 2024-08-12 03:13:03 -06:00
Wouter Deconinck
1144487ee7 autodiff: add v1.0.2 -> v1.1.2 (#43527) 2024-08-12 11:03:31 +02:00
Wouter Deconinck
742b78d2b5 wayland-protocols: add v1.35, v1.36; support tests (#45670) 2024-08-12 10:54:10 +02:00
Wouter Deconinck
633d1d2ccb abseil-cpp: add v20240722; support tests (#45671) 2024-08-12 10:50:20 +02:00
Wouter Deconinck
9adefd587e ccache: add v4.10.2 (#45672) 2024-08-12 10:46:55 +02:00
Wouter Deconinck
102a30a5a2 {url,homepage} = http->https://*.sourceforge.net (#45676) 2024-08-12 02:24:32 -06:00
Harmen Stoppels
7ddc886d6d buildcache: fix hard-coded, outdated layout version (#45645) 2024-08-12 09:25:31 +02:00
Wouter Deconinck
9e7183fb14 catch2: add v3.5.4, v3.6.0 (#45662)
* catch2: add v3.5.4, v3.6.0

* [@spackbot] updating style on behalf of wdconinc

---------

Co-authored-by: wdconinc <wdconinc@users.noreply.github.com>
2024-08-11 21:00:42 -07:00
Wouter Deconinck
18ab3c20ce opencascade: add v7.8.1 (#45665)
* opencascade: add v7.8.1

* opencascade: with default_args
2024-08-11 16:27:34 -06:00
Jim Phillips
b91b42dc7b namd: do not require single_node_gpu with rocm (#45650)
Removes conflict inadvertently left in #45553
2024-08-11 16:04:56 -06:00
Adam J. Stewart
7900d0b3db py-ruff: add v0.5.7 (#45660) 2024-08-11 14:31:23 -07:00
Wouter Deconinck
847d7bc87d libdrm: add v2.4.121, v2.4.122 (switch to multiple build systems) (#45663)
* libdrm: add  v2.4.121, v2.4.122 (switch to multiple build systems)

* [@spackbot] updating style on behalf of wdconinc

---------

Co-authored-by: wdconinc <wdconinc@users.noreply.github.com>
2024-08-11 14:26:37 -07:00
Wouter Deconinck
078984dcf4 libx11: add v1.8.10 (#45664) 2024-08-11 14:20:24 -07:00
Wouter Deconinck
010324714f py-gssapi: add v1.8.3 (#45666) 2024-08-11 14:09:45 -07:00
AcriusWinter
7ce5ac1e6e fortran: new test API (#45470)
* fortran: new test API
* fortran: add provides to gcc package
* fortran: simplify stand-alone test processing

---------

Co-authored-by: Tamara Dahlgren <dahlgren1@llnl.gov>
2024-08-11 14:32:39 -06:00
Steven Hahn
565165f02d benchmark: add 1.8.5 (#45657)
Signed-off-by: Steven Hahn <hahnse@ornl.gov>
2024-08-11 13:48:05 -06:00
AcriusWinter
e4869cd558 hypre-cmake: old to new test API (#45144)
* hypre-cmake: old to new test API
* hypre-cmake: update Makefile to use installed files
* hypre-cmake: make stand-alone test method name more specific

---------

Co-authored-by: Tamara Dahlgren <dahlgren1@llnl.gov>
2024-08-11 03:03:24 -06:00
AcriusWinter
990e0dc526 hypre: old to new test API (#45066)
* hypre: old to new test API
* hypre: restore test_parts; add Makefile cleanup

---------

Co-authored-by: Tamara Dahlgren <dahlgren1@llnl.gov>
2024-08-11 02:28:25 -06:00
Piotr Luszczek
f9d8b6b5aa plasma: add version 24.8.7 (#45656) 2024-08-11 02:14:21 -06:00
Massimiliano Culpo
2079b888c8 Remove the old concretizer (#45215)
The old concretizer is still used to bootstrap clingo from source. If we switch to a DAG model
where compilers are treated as nodes, we need to either:

1. fix the old concretizer to support this (which is a lot of work and possibly research), or
2. bootstrap `clingo` without the old concretizer.

This PR takes the second approach and gets rid of the old concretizer code. To bootstrap
`clingo`, we store some concrete spec prototypes as JSON, select one according to the
coarse-grained system architecture, and tweak them according to the current host.

The old concretizer and related dead code are removed.  In particular, this removes
`Spec.normalize()` and related methods, which were used in many unit-tests to set
up the test context. The tests have been updated not to use `normalize()`.

- [x] Bootstrap clingo concretization based on a JSON file
- [x] Bootstrap clingo *before* patchelf
- [x] Remove any use of the old concretizer, including:
      * Remove only_clingo and only_original fixtures
      * Remove _old_concretize and _new_concretize
      * Remove _concretize_together_old
      * Remove _concretize_together_new
      * Remove any use of `SPACK_TEST_SOLVER`
      * Simplify CI jobs
- [x] ensure bootstrapping `clingo` works on on Darwin and Windows
- [x] Raise an intelligible error when a compiler is missing
- [x] Ensure bootstrapping works on FreeBSD
- [x] remove normalize and related methods

Signed-off-by: Todd Gamblin <tgamblin@llnl.gov>
2024-08-10 16:12:27 -07:00
Teague Sterling
2dbc5213b0 pulseaudio: add pkgconfig build dep (#45653)
Signed-off-by: Teague Sterling <teaguesterling@gmail.com>
2024-08-10 12:01:16 -05:00
Greg Becker
7a83cdbcc7 Concretizer should respect namespace of reused specs (#45538)
* concretize.lp: improve coverage of internal_error facts
* concretizer: track namespaces for reused packages
* regression test
2024-08-09 13:51:34 -07:00
Dominic Hofer
da33c12ad4 Remove execution permission from setup-env.sh (#45641)
`setup-env.sh` is meant to be sourced, not executed directly.
By revoking execution permissions, users who accidentally execute
the script will receive an error instead of seeing no effect.

* Remove execution permission from `setup-env.sh` and friends
* Don't make output file executable in `spack commands --update-completion`

---------

Co-authored-by: Todd Gamblin <tgamblin@llnl.gov>
Signed-off-by: Todd Gamblin <tgamblin@llnl.gov>
2024-08-09 13:27:07 -07:00
Alec Scott
c30979ed66 fzf: add v0.52.1, v0.53.0, v0.54.3 (#45634)
* fzf: add v0.52.1, v0.53.0, v0.54.3

* fzf: accept suggestions for url_for_version

Co-authored-by: Tamara Dahlgren <35777542+tldahlgren@users.noreply.github.com>

---------

Co-authored-by: Tamara Dahlgren <35777542+tldahlgren@users.noreply.github.com>
2024-08-09 11:11:01 -07:00
Alec Scott
5d7d18d028 go: add v1.22.6, deprecate insecure versions (#45635) 2024-08-09 10:45:11 -07:00
John W. Parent
92e42bbed9 Windows: Port Libuv (#45413)
* On Windows it is built with CMake, however CMake is built against
  libuv, so libuv must depend on cmake+ownlibs to short circuit the
  circular dependency
* libuv currently fetches the -dist source distribution of libuv for
  certain versions because those versions contain a pre-generated
  ./configure script. However those distributions have all CMake
  files removed, so they cannot be used to build on Windows.
  Because the source distributions are different, this means the
  checksums are different, and necessitates an additional version
  declaration for each version we want to support with CMake.
2024-08-09 10:13:57 -06:00
AcriusWinter
899ac78887 cxx: new test API (#45462)
* cxx: new test API
* gcc: provide cxx
* default providers:  cxx provided by gcc
* cxx: cleanup stand-alone test
  - test_c -> test_cxx
  - simplify compilation and execution
  - corrected output checks

---------

Co-authored-by: Tamara Dahlgren <dahlgren1@llnl.gov>
2024-08-08 23:23:05 -06:00
AcriusWinter
7bec524dd5 Install test root update: old to new API (#45491)
* convert install_test_root from old to new API
2024-08-08 13:01:06 -07:00
Dom Heinzeller
546e0925b0 odc: add v1.5.2 (#45622)
* Add odc@1.5.2

* Add climbfuji as maintainer in var/spack/repos/builtin/packages/odc/package.py
2024-08-08 13:28:19 -06:00
Vanessasaurus
95b533ddcd flux-sched: add version 0.36.1 (#45619)
Signed-off-by: vsoch <vsoch@users.noreply.github.com>
Co-authored-by: vsoch <vsoch@users.noreply.github.com>
2024-08-08 13:18:35 -06:00
Eric Lingerfelt
28fe85ae66 Adding ecmwf-atlas version 0.38 (#45505) 2024-08-08 12:58:21 -06:00
Chris Marsh
6b936884f5 py-rioxarray: add v0.17.0 (#45529)
* Update available versions

* fix style

* Reduce added versions to just a single new version as per review

* fix style

* Set dependency versions in line with pyproject and setup.py

* add new interp variant

* add wheel as required

* Add variant description

* change +interp default, actually add packaging this time
2024-08-08 19:00:39 +02:00
Vicente Bolea
7b879d092d vtk-m: update vtk-m to 2.2.0 (#45544) 2024-08-08 09:35:48 -07:00
Massimiliano Culpo
007c1148c0 Remove Compiler.PrgEnv* attributes (#45615) 2024-08-08 18:15:42 +02:00
Wouter Deconinck
8b2fec61f2 hepmc3: add v3.3.0 (#45617) 2024-08-08 17:19:26 +02:00
Andrey Perestoronin
1cebb7e1c3 intel-oneapi-2024.2.1 (#45618) 2024-08-08 10:44:26 -04:00
Chris Marsh
6f8d8ba47e openblas : fix install_name on macos (#45606) 2024-08-08 07:50:30 -06:00
Teague Sterling
9464898449 py-glean-sdk: add 60.5.0 and fix 60.0.1 checksum (#45630)
Signed-off-by: Teague Sterling <teaguesterling@gmail.com>
Co-authored-by: Bernhard Kaindl <bernhardkaindl7@gmail.com>
2024-08-08 07:35:16 -06:00
Dom Heinzeller
0902910784 Compiler wrapper: add env var to pass vcheck flags (#44588)
Fixes #43494

Add a set of environment variables SPACK_ALWAYS_CFLAGS (etc.) that
are always applied by the compiler wrapper.

Unlike SPACK_CFLAGS, for example, these will also be applied to
version checks (both SPACK_CFLAGS and SPACK_ALWAYS_CFLAGS will be
applied to the other invocation modes like ccld etc.).

Using this new functionality, the classic Intel and oneAPI compilers
are updated to pass compiler flags that disable warning messages
when newer versions are invoked via their older binary names
(these warnings were also generated for version checks, hence the
need for a new wrapper variable).

---------

Co-authored-by: Peter Josef Scheibel <scheibel1@llnl.gov>
2024-08-08 06:40:36 +00:00
dependabot[bot]
7050ace968 build(deps): bump docker/build-push-action from 6.5.0 to 6.6.1 (#45623)
Bumps [docker/build-push-action](https://github.com/docker/build-push-action) from 6.5.0 to 6.6.1.
- [Release notes](https://github.com/docker/build-push-action/releases)
- [Commits](5176d81f87...16ebe778df)

---
updated-dependencies:
- dependency-name: docker/build-push-action
  dependency-type: direct:production
  update-type: version-update:semver-minor
...

Signed-off-by: dependabot[bot] <support@github.com>
Co-authored-by: dependabot[bot] <49699333+dependabot[bot]@users.noreply.github.com>
2024-08-08 07:26:50 +02:00
Federico Ficarelli
7efbad0d81 hipsycl: remove myself from maintainers (#45616) 2024-08-07 21:50:59 +02:00
teddy
2298abd7f4 Add py-gmsh package (#45409)
Co-authored-by: chantrait <teddy.chantrait@cea.fr>
2024-08-07 20:47:00 +02:00
BOUDAOUD34
46efa7e151 namd: add compile options for ROCm (#45553)
* namd:add compile options for ROCm
* Combine --rocm-prefix and its value in a single opts.extend call to ensure they remain ordered correctly and improve code robustness.
* Standardize the code and add ROCm conflicts
* add single_node_gpu conflict

---------

Co-authored-by: U-PALLAS\boudaoud <boudaoud@pc44.pallas.cines.fr>
2024-08-07 10:54:33 -07:00
Adam J. Stewart
60c589db28 PyTorch: add support for the UCC distributed backend (#45598) 2024-08-07 10:49:29 -07:00
Sreenivasa Murthy Kolam
ca9a7b2033 MIOpen-hip , RocFFT packages: fix miopendriver failure and build failure with centos-8 os (#45429)
* MIOpen-hip package: fix miopendriver failure with centos-8 os
* fix the centos-8 build error with lstdc++
2024-08-07 10:45:20 -07:00
kjrstory
470a26bbcd openfoam-org: Add new version 11 (#39771) 2024-08-07 09:55:33 -07:00
Teague Sterling
b52e4fc650 libxcvt: new package (#44640)
* Adding libxcvt package

Signed-off-by: Teague Sterling <teaguesterling@gmail.com>

* [@spackbot] updating style on behalf of teaguesterling

* Update package.py

* Update package.py

* updating checksum after swithc to x.org mirror

Signed-off-by: Teague Sterling <teaguesterling@gmail.com>

---------

Signed-off-by: Teague Sterling <teaguesterling@gmail.com>
2024-08-07 10:00:45 -05:00
Mathieu Cloirec
a653579e56 hipsycl: add compile options for ROCm (#45497)
Co-authored-by: cloirec <cloirec@pc54.cines.fr>
2024-08-07 16:23:53 +02:00
Chris Marsh
7f89391b14 parallelio: fix install_name for on macos (#45567) 2024-08-07 15:55:10 +02:00
Wouter Deconinck
34c98101ad xorg-server and xorg pkgs: Fix the build and mark protocols as build deps (#45536) 2024-08-07 14:51:52 +02:00
Jeremy Guillette
f1ea979e2b py-gevent: @:23.9.0 conflicts with py-cython@3.0.10 (#45257) (#45295)
Co-authored-by: Wouter Deconinck <wdconinc@gmail.com>
2024-08-07 14:35:30 +02:00
Christopher Christofi
55cbdd435c py-chex: add v0.1.86 (#45476) 2024-08-07 14:16:01 +02:00
Adam J. Stewart
1cce947be6 py-torchgeo: incompatible with lightning 2.3 (#45612) 2024-08-07 13:38:33 +02:00
Adam J. Stewart
0a735c6ea6 py-lightning: add v2.4.0 (#45611) 2024-08-07 13:36:33 +02:00
Adam J. Stewart
5400b1e222 py-lightly: add v1.5.11 (#45610) 2024-08-07 13:34:58 +02:00
Bernhard Kaindl
ef461befcc linux-perf: Add capstone variant to build with capstone disassembler 2024-08-07 13:34:07 +02:00
Bernhard Kaindl
831b4a3e4a linux-perf: If clang is in PATH, pass "CLANG=" + shutil.which("clang")
When clang is installed I get `clang: Permission denied`.
Setting CLANG to the full path of clang fixes this.

Signed-off-by: Bernhard Kaindl <bernhardkaindl7@gmail.com>
2024-08-07 13:34:07 +02:00
Jordan Galby
6007a77a33 Add linux-perf 2024-08-07 13:34:07 +02:00
Jordan Galby
a2794f04bc audit-userspace: Backport patch to fix build error
Fix build error:

```
     1711    ../../../py-compile: line 125: test: found: integer expression expected
     1712    ../../../py-compile: line 137: python: command not found
  >> 1713    make[4]: *** [Makefile:521: install-pyexecPYTHON] Error 127
```
2024-08-07 13:34:07 +02:00
Jordan GALBY
3ae3bfd997 audit-userspace: Add 3.1.2
Fixes build errors on almalinux 8 gcc 8.5.0:

```txt
     1352    audit_wrap.c: In function '_wrap_audit_rule_data_buf_set':
  >> 1353    audit_wrap.c:5010:17: error: cast specifies array type
     1354         arg1->buf = (char [])(char *)memcpy(malloc((size)*sizeof(char)), (const char *)(arg2), sizeof(char)*(size));
     1355                     ^
  >> 1356    audit_wrap.c:5010:15: error: invalid use of flexible array member
     1357         arg1->buf = (char [])(char *)memcpy(malloc((size)*sizeof(char)), (const char *)(arg2), sizeof(char)*(size));
     1358                   ^
  >> 1359    audit_wrap.c:5012:15: error: invalid use of flexible array member
     1360         arg1->buf = 0;
     1361                   ^
```
2024-08-07 13:34:07 +02:00
Jordan GALBY
5f3f968a1f xmlto: Fix missing flex build dep
Fixes error:

```txt
3 errors found in build log:
     61    ==> xmlto: Executing phase: 'build'
     62    ==> [2023-10-26-09:48:35.425903] 'make' '-j16' 'V=1'
     63    make  all-am
     64    make[1]: Entering directory '/tmp/root/spack-stage/spack-stage-xmlto-0.0.28-huuygrp4qasytrezg774yavnnaxzgp2e/spack-src'
     65    /bin/sh ./ylwrap xmlif/xmlif.l .c xmlif/xmlif.c -- /bin/sh /tmp/root/spack-stage/spack-stage-xmlto-0.0.28-huuygrp4qasytrezg774yavnnaxzgp2e/spack-src/missing flex
     66    /tmp/root/spack-stage/spack-stage-xmlto-0.0.28-huuygrp4qasytrezg774yavnnaxzgp2e/spack-src/missing: line 81: flex: command not found
  >> 67    WARNING: 'flex' is missing on your system.
     68             You should only need it if you modified a '.l' file.
     69             You may want to install the Fast Lexical Analyzer package:
     70             <http://flex.sourceforge.net/>
  >> 71    make[1]: *** [Makefile:757: xmlif/xmlif.c] Error 127
     72    make[1]: Leaving directory '/tmp/root/spack-stage/spack-stage-xmlto-0.0.28-huuygrp4qasytrezg774yavnnaxzgp2e/spack-src'
  >> 73    make: *** [Makefile:584: all] Error 2
```
2024-08-07 13:34:07 +02:00
Jordan GALBY
652de07d8c babeltrace: Fix build minimal OS: missing pkgconfig 2024-08-07 13:34:07 +02:00
Jordan GALBY
c16191d9ea babeltrace: Add 1.5.11 for linux-perf 2024-08-07 13:34:07 +02:00
Konstantinos Parasyris
1b1663acea flux-pmix: correct FLUX_PMI_CLIENT_SEARCHPATH (#45277) 2024-08-07 13:09:47 +02:00
Jordan Galby
d2f269ed7b Fix SIP build system installing files into python-venv (#45360)
For example: spack install py-pyqt5 or py-pyqt6 would install pylupdate5 pyrcc5 and
pyuic5 into in python-venv's install prefix.

Fix https://github.com/spack/spack/issues/45359
2024-08-07 12:12:56 +02:00
Tamara Dahlgren
4584d85ca6 biobambam2: fix test scripts to use installed binaries (#45609) 2024-08-07 11:43:23 +02:00
Wouter Deconinck
2106a2be26 qt-base: let QtPackage base class handle module files (#45603) 2024-08-07 10:53:32 +02:00
Wouter Deconinck
228c82502d qt-5compat: new package for QtCore5Compat module (#45601) 2024-08-07 10:47:31 +02:00
tygoetsch
431f5627d9 Add charliecloud@0.38 (#45566) 2024-08-07 01:33:36 -06:00
Teague Sterling
fb315c37ba py-hail: new package (#44521) 2024-08-07 06:55:07 +02:00
dependabot[bot]
f9fa160a24 build(deps): bump actions/upload-artifact from 4.3.5 to 4.3.6 (#45608)
Bumps [actions/upload-artifact](https://github.com/actions/upload-artifact) from 4.3.5 to 4.3.6.
- [Release notes](https://github.com/actions/upload-artifact/releases)
- [Commits](89ef406dd8...834a144ee9)

---
updated-dependencies:
- dependency-name: actions/upload-artifact
  dependency-type: direct:production
  update-type: version-update:semver-patch
...

Signed-off-by: dependabot[bot] <support@github.com>
Co-authored-by: dependabot[bot] <49699333+dependabot[bot]@users.noreply.github.com>
2024-08-07 06:50:18 +02:00
Massimiliano Culpo
1ee29929a7 cmake: add v3.30.2 (#45593) 2024-08-06 19:53:45 -06:00
Massimiliano Culpo
97e691cdbf binutils: add v2.43 (#45594) 2024-08-06 15:09:55 -06:00
Matthieu Dorier
51ba25fec3 py-gcovr: add version 7.2 (#45597)
* py-gcovr: add version 7.2
* py-gcovr: fix dependency on py-tomli

---------

Co-authored-by: Tamara Dahlgren <35777542+tldahlgren@users.noreply.github.com>
2024-08-06 13:41:03 -06:00
Matthieu Dorier
81281646e9 py-colorlog: added new version (#45596)
* py-colorlog: added new version
* py-colorlog: corrected dependency on py-setuptools
2024-08-06 13:23:46 -06:00
Wouter Deconinck
85ec4cca92 libxshmfence: add v1.3.1, v1.3.2 (#44393)
* libxshmfence: add v1.3.1, v1.3.2
* libxshmfence: fix url_for_version
* libxshmfence: url_for_version without spec.satisfies
* libxshmfence: mv url_for_version after directives

---------

Co-authored-by: Tamara Dahlgren <35777542+tldahlgren@users.noreply.github.com>
2024-08-06 10:56:35 -07:00
Pranav Sivaraman
f3c21b0177 libdwarf: remove old versions with 0.10.1 (#45306) 2024-08-06 18:50:29 +02:00
Alex Leute
51ac4686b4 py-anvio and py-rich-argparse: new packages (#45367) 2024-08-06 17:52:18 +02:00
Michael Kuhn
82752ad0b7 rocksdb: add missing build dependencies (#45252) 2024-08-06 09:23:13 -06:00
Hariharan Devarajan
b231e6e9e9 Changes to DLIOProfiler and DFTracer Package (#45180)
Co-authored-by: Massimiliano Culpo <massimiliano.culpo@gmail.com>
2024-08-06 13:49:01 +02:00
Dave Keeshan
90f8c20133 verible: Add versions 0.0.3671 and 0.0.3667 (#44660) 2024-08-06 11:28:36 +02:00
Dave Keeshan
9835b072e2 yosys: add v0.42 2024-08-06 11:27:36 +02:00
Massimiliano Culpo
f438a33978 changa: add v3.5 (#45591) 2024-08-06 11:12:45 +02:00
Axel Huebl
8ded2ddf5e C-Blosc2: add v2.15.1 (#45582) 2024-08-06 02:54:24 -06:00
Gavin John
e3904d4cbf Fix spack url stats (#45584) 2024-08-06 02:54:01 -06:00
Bill Williams
e1bcbcf9f3 Score-P: Add remapping for rocmcc (#45316)
* Score-P: Add remapping for rocmcc

rocmcc -> amdclang for ScoreP

* [@spackbot] updating style on behalf of wrwilliams

---------

Co-authored-by: William Williams <william.williams@tu-dresden.de>
Co-authored-by: wrwilliams <wrwilliams@users.noreply.github.com>
2024-08-06 09:51:50 +02:00
Cameron Rutherford
fa671a639a hiop: update package.py with correct cusolver_lu CMake variable (#45332) 2024-08-06 09:40:56 +02:00
snehring
28171f1b9d diamond: add blast support and eigen (#45254)
Signed-off-by: Shane Nehring <snehring@iastate.edu>
2024-08-06 09:30:22 +02:00
Christopher Christofi
8de03e2bf5 py-numba4jax: add new package (#45481) 2024-08-06 09:17:41 +02:00
Massimiliano Culpo
2fa314b6b6 Avoid duplicate dependabot bumps (#45590)
* Avoid duplicate dependabot bumps

Example of a duplicate bump:
- https://github.com/spack/spack/pull/45124
- https://github.com/spack/spack/pull/45125

* Deduplicate "pip" ecosystem
2024-08-06 07:14:55 +00:00
alvaro-sch
7780059c64 orca: add v6.0.0 (#45489) 2024-08-06 09:13:42 +02:00
Satish Balay
7e69671570 petsc, py-petsc4py: add v3.21.4 (#45506) 2024-08-06 08:43:27 +02:00
Rocco Meli
5650d4d419 dbcsr: add v2.7.0 and +g2g variant (#45501)
Co-authored-by: RMeli <RMeli@users.noreply.github.com>
2024-08-06 08:40:09 +02:00
Andrew W Elble
fa38dd9386 gdrcopy: specify CUDA envvar during build (#45415)
otherwise /usr/local/cuda is used
2024-08-06 08:32:31 +02:00
Weiqun Zhang
16a2a5047c amrex: add v24.08 (#45543) 2024-08-06 08:10:53 +02:00
dependabot[bot]
899e458ee5 build(deps): bump flake8 in /.github/workflows/requirements/style (#45587)
Bumps [flake8](https://github.com/pycqa/flake8) from 7.1.0 to 7.1.1.
- [Commits](https://github.com/pycqa/flake8/compare/7.1.0...7.1.1)

---
updated-dependencies:
- dependency-name: flake8
  dependency-type: direct:production
  update-type: version-update:semver-patch
...

Signed-off-by: dependabot[bot] <support@github.com>
Co-authored-by: dependabot[bot] <49699333+dependabot[bot]@users.noreply.github.com>
2024-08-06 07:09:18 +02:00
dependabot[bot]
4a8d09dcc1 build(deps): bump flake8 from 7.1.0 to 7.1.1 in /lib/spack/docs (#45588)
Bumps [flake8](https://github.com/pycqa/flake8) from 7.1.0 to 7.1.1.
- [Commits](https://github.com/pycqa/flake8/compare/7.1.0...7.1.1)

---
updated-dependencies:
- dependency-name: flake8
  dependency-type: direct:production
  update-type: version-update:semver-patch
...

Signed-off-by: dependabot[bot] <support@github.com>
Co-authored-by: dependabot[bot] <49699333+dependabot[bot]@users.noreply.github.com>
2024-08-06 07:08:57 +02:00
Matthieu Dorier
98e206193b py-configspace: add main, 1.0.0, 1.0.1, 1.1.1, 1.1.2, 1.1.3, 1.1.4, fix url and fix cython dependency (#45193)
* [py-configspace] fix dependency on cython

* py-cython not needed starting from 1.0.0

* added py-configspace 1.0.0 and 1.0.1

* py-configspace: fix style

* added py-configspace version 1.1.0

* added py-configspace version 1.1.1

* py-configspace: two more versions and new maintainer

* py-configspace: fixed typo

* py-configspace: added version 1.1.4
2024-08-05 23:26:27 -05:00
Christopher Christofi
6a6c295938 r: add version 4.4.1 (#45564) 2024-08-05 18:45:27 -06:00
Tamara Dahlgren
9a1002c098 tix: skip implicit patch (#45244) 2024-08-05 17:34:26 -07:00
Zach Jibben
6c903543e1 Update Truchas package for 24.06 and 24.07 (#45583) 2024-08-05 16:40:56 -07:00
Jonathon Anderson
994d995b64 intel-xed: Rewrite recipe to match upstream install layout (v2) (#45155)
* intel-xed: Rewrite to use mbuild install procedure
  Fixes https://github.com/spack/spack/issues/41268
* hpctoolkit: depend on intel-xed +deprecated-includes
* intel-xed: add missing versions from 2024
* intel-xed: Verify dependencies on C/C++ compilers

---------

Signed-off-by: Jonathon Anderson <anderson.jonathonm@gmail.com>
2024-08-05 14:53:15 -07:00
Matt Thompson
54d17ae044 Update GFE packages (#45194)
* Update GFE packages
* Approve compiler depends_on
2024-08-05 14:00:23 -07:00
jmuddnv
9ea103f94e nvhpc: add v24.7 (#45511) 2024-08-05 21:49:59 +02:00
Richard Berger
83efafa09f Add language depends_on on several packages (#45298) 2024-08-05 21:48:58 +02:00
Jaroslav Hron
5f29bb9b22 petsc: fix zlib-api handling (#45545) 2024-08-05 21:24:50 +02:00
Luc Grosheintz
441b64c3d9 highfive: add v2.10.0 (#45486) 2024-08-05 21:16:54 +02:00
Sergey Kosukhin
cee6c59684 nag: add version 7.2.7203 (#45556) 2024-08-05 20:40:59 +02:00
Wouter Deconinck
b1adfcf665 seacas: limit to fmt@10 (#45565) 2024-08-05 13:11:45 -05:00
Michael Kuhn
433abfcc80 gcc: add 14.2.0 (#45577) 2024-08-05 11:01:09 -06:00
Wouter Deconinck
02063302c5 fastor: add git attribute, verify language dependency (#45549) 2024-08-05 18:56:36 +02:00
Massimiliano Culpo
b9125ae3e7 Do not halt concretization on unknown variants in externals (#45326)
* Do not halt concretization on unkwnown variants in externals
2024-08-05 09:24:57 -07:00
Pranav Sivaraman
0a2b63b032 highway: add v1.2.0 (#45335)
Co-authored-by: pranav-sivaraman <pranav-sivaraman@users.noreply.github.com>
2024-08-05 18:23:43 +02:00
SXS Bot
35d84a6456 spectre: add v2024.08.03 (#45575)
Co-authored-by: sxs-bot <sxs-bot@users.noreply.github.com>
2024-08-05 18:18:25 +02:00
jgraciahlrs
0257b2db4b libxcb: Set well-known locale for build (#45502)
* libxcb: Set well-known locale for build

Builds might fail if no valid locale is set. See https://www.linuxfromscratch.org/blfs/view/git/x/libxcb.html

* libxcb: fix style

* libxcb: change locale from en_US.UTF-8 to C.UTF-8

* libxcb: fix style

* Update var/spack/repos/builtin/packages/libxcb/package.py

Co-authored-by: Wouter Deconinck <wdconinc@gmail.com>

* [@spackbot] updating style on behalf of jgraciahlrs

---------

Co-authored-by: Wouter Deconinck <wdconinc@gmail.com>
Co-authored-by: jgraciahlrs <jgraciahlrs@users.noreply.github.com>
2024-08-05 08:47:38 -05:00
Wouter Deconinck
d3bf1e04fc py-vector: add through v1.4.1 (switch to hatchling) (#45527) 2024-08-05 10:45:57 +02:00
Auriane R.
530639e15f Use satisfies instead of if ... in spec in b* and c* directories (#45555) 2024-08-04 11:59:13 -06:00
Wouter Deconinck
c8695f2ba6 py-mypy: add v1.9.0, v1.10.1, v1.11.1 (#45542) 2024-08-04 13:08:04 +02:00
dependabot[bot]
f3bd820374 build(deps): bump pytest from 8.3.1 to 8.3.2 in /lib/spack/docs (#45461)
Bumps [pytest](https://github.com/pytest-dev/pytest) from 8.3.1 to 8.3.2.
- [Release notes](https://github.com/pytest-dev/pytest/releases)
- [Changelog](https://github.com/pytest-dev/pytest/blob/main/CHANGELOG.rst)
- [Commits](https://github.com/pytest-dev/pytest/compare/8.3.1...8.3.2)

---
updated-dependencies:
- dependency-name: pytest
  dependency-type: direct:production
  update-type: version-update:semver-patch
...

Signed-off-by: dependabot[bot] <support@github.com>
Co-authored-by: dependabot[bot] <49699333+dependabot[bot]@users.noreply.github.com>
2024-08-04 05:44:52 +00:00
dependabot[bot]
29b9fe1f0b build(deps): bump black in /.github/workflows/requirements/style (#45561)
Bumps [black](https://github.com/psf/black) from 24.4.2 to 24.8.0.
- [Release notes](https://github.com/psf/black/releases)
- [Changelog](https://github.com/psf/black/blob/main/CHANGES.md)
- [Commits](https://github.com/psf/black/compare/24.4.2...24.8.0)

---
updated-dependencies:
- dependency-name: black
  dependency-type: direct:production
  update-type: version-update:semver-minor
...

Signed-off-by: dependabot[bot] <support@github.com>
Co-authored-by: dependabot[bot] <49699333+dependabot[bot]@users.noreply.github.com>
2024-08-03 21:49:33 -05:00
dependabot[bot]
1090895e72 build(deps): bump black from 24.4.2 to 24.8.0 in /lib/spack/docs (#45563)
Bumps [black](https://github.com/psf/black) from 24.4.2 to 24.8.0.
- [Release notes](https://github.com/psf/black/releases)
- [Changelog](https://github.com/psf/black/blob/main/CHANGES.md)
- [Commits](https://github.com/psf/black/compare/24.4.2...24.8.0)

---
updated-dependencies:
- dependency-name: black
  dependency-type: direct:production
  update-type: version-update:semver-minor
...

Signed-off-by: dependabot[bot] <support@github.com>
Co-authored-by: dependabot[bot] <49699333+dependabot[bot]@users.noreply.github.com>
2024-08-03 21:48:50 -05:00
dependabot[bot]
e983f4a858 build(deps): bump sphinx-design from 0.6.0 to 0.6.1 in /lib/spack/docs (#45562)
Bumps [sphinx-design](https://github.com/executablebooks/sphinx-design) from 0.6.0 to 0.6.1.
- [Release notes](https://github.com/executablebooks/sphinx-design/releases)
- [Changelog](https://github.com/executablebooks/sphinx-design/blob/main/CHANGELOG.md)
- [Commits](https://github.com/executablebooks/sphinx-design/compare/v0.6.0...v0.6.1)

---
updated-dependencies:
- dependency-name: sphinx-design
  dependency-type: direct:production
  update-type: version-update:semver-patch
...

Signed-off-by: dependabot[bot] <support@github.com>
Co-authored-by: dependabot[bot] <49699333+dependabot[bot]@users.noreply.github.com>
2024-08-03 21:46:19 -05:00
Wouter Deconinck
72e3f10d5b ffmpeg: update patch hashes for addition of the X-Git-Tag (#45574) 2024-08-03 22:43:54 +02:00
Teague Sterling
c5ae5ba4db xfce4: new packages (#44646) 2024-08-03 13:29:48 +02:00
Alex Richert
a1090029f3 g2: add variants for recent releases (#45441) 2024-08-03 13:01:18 +02:00
Alex Richert
0135c808a0 landsfcutil: add testing with pfunit (#45449) 2024-08-03 13:00:15 +02:00
Alex Richert
678084fed8 bufr: add 12.1.0 (#45459) 2024-08-03 12:56:58 +02:00
Adam J. Stewart
705d58005d py-jax / JAX: add v0.4.31 (#45519) 2024-08-03 11:16:42 +02:00
Alex Richert
cee266046b sp: remove 'generated' tag (#45455) 2024-08-03 11:13:31 +02:00
dependabot[bot]
5aa3d9c39c build(deps): bump actions/upload-artifact from 4.3.4 to 4.3.5 (#45559)
Bumps [actions/upload-artifact](https://github.com/actions/upload-artifact) from 4.3.4 to 4.3.5.
- [Release notes](https://github.com/actions/upload-artifact/releases)
- [Commits](0b2256b8c0...89ef406dd8)

---
updated-dependencies:
- dependency-name: actions/upload-artifact
  dependency-type: direct:production
  update-type: version-update:semver-patch
...

Signed-off-by: dependabot[bot] <support@github.com>
Co-authored-by: dependabot[bot] <49699333+dependabot[bot]@users.noreply.github.com>
2024-08-03 00:09:47 -06:00
dependabot[bot]
3ee6507dd6 build(deps): bump mypy from 1.11.0 to 1.11.1 in /lib/spack/docs (#45530)
Bumps [mypy](https://github.com/python/mypy) from 1.11.0 to 1.11.1.
- [Changelog](https://github.com/python/mypy/blob/master/CHANGELOG.md)
- [Commits](https://github.com/python/mypy/compare/v1.11...v1.11.1)

---
updated-dependencies:
- dependency-name: mypy
  dependency-type: direct:production
  update-type: version-update:semver-patch
...

Signed-off-by: dependabot[bot] <support@github.com>
Co-authored-by: dependabot[bot] <49699333+dependabot[bot]@users.noreply.github.com>
2024-08-02 17:01:25 -06:00
Todd Gamblin
425bba2f1a Allow spec queries by namespace (#45416)
* Allow spec queries by `namespace`

Spack specs have "namespaces" that indicate what package repository they come from, but
there has not been a way to use the spec syntax to match one.

You can say things like this:

```console
spack find builtin.zlib
spack find myrepo.zlib
```

But, because namespaces are written as a dot-separated prefix on the name, you can't say
"find me all specs in namespace myrepo". The syntax doesn't allow it.

This PR allows you to specify anonymous specs with namespaces on the CLI. Specifically
you can do queries like this:

```console
spack find namespace=builtin
spack find namespace=myrepo
```

You can use this anywhere else you use spec syntax, e.g. in a config file to separate
installations based on what repo they came from:

```yaml
spack:
    config:
        install_tree:
            root: $spack/opt/spack
            projections:
                namespace=myrepo: "myrepo_special_path/{name}-{hash}"
                namespace=builtin: "builtin/{name}-{hash}"
```

This PR adds a special `namespace_if_anonymous` attribute to specs, which returns the
`namespace` if the spec has no name, otherwise it returns `None`. This allows us to
print the namespace for anonymous specs but to continue hiding it for most views, as
we've done so far.

This is implemented as a special case, but it's one that already exists, along with
`platform`, `os`, `target`, etc. This also reserves existing special case names for
variants so that users cannot define them in their package files. This change is
potentially breaking, but I do not think it will be common. There are no builtin
packages with a variant called `namespace`, and defining `os`, `target`, or `platform`
as a variant would've likely caused other problems if they were already being used.

Signed-off-by: Todd Gamblin <tgamblin@llnl.gov>
2024-08-02 13:38:14 -05:00
Wouter Deconinck
a2cbc46dbc openblas: fix AttributeError when threads=openmp (#45338) 2024-08-02 12:19:06 -06:00
Wouter Deconinck
8538b0c01d xmlto: hotfix upstream patch removed by fedora (#45551) 2024-08-02 08:33:17 -06:00
Teague Sterling
ff30da7385 py-glean-sdk: new package (#45389)
Signed-off-by: Teague Sterling <teaguesterling@gmail.com>
Co-authored-by: Bernhard Kaindl <bernhardkaindl7@gmail.com>
2024-08-02 07:29:36 -06:00
Alex Richert
7c5771ed11 ncio: add check function to run unit tests (#45448) 2024-08-02 11:36:01 +02:00
Alex Richert
81fb1a9b8f bacio: remove an old maintainer and 'generated' tags (#45440) 2024-08-02 11:33:37 +02:00
Alex Richert
835bd2557e g2c: remove the 'generated' tag (which is correct) (#45442) 2024-08-02 11:25:31 +02:00
Alex Richert
e5a8d7be49 gfsio: add testing with pfunit (#45444) 2024-08-02 11:24:54 +02:00
Alex Richert
9f795de60b nemsio: add check to run the unit tests (#45450) 2024-08-02 11:22:20 +02:00
Alex Richert
7791a30bc2 nemsiogfs: add running the unit tests (#45451) 2024-08-02 11:21:35 +02:00
Alex Richert
2e85c83301 sfcio: add unit testing with pfunit (#45453) 2024-08-02 11:20:44 +02:00
Alex Richert
251190a0c4 sigio: add unit testing with pfunit (#45454) 2024-08-02 11:19:41 +02:00
Alex Richert
90b85239d5 wrf-io: remove 'generated' tags (which are correct) (#45458) 2024-08-02 11:16:45 +02:00
Alex Richert
f276a8da75 w3emc: add @2.12.0, conflict on +shared~pic (#45456) 2024-08-02 11:16:05 +02:00
Alex Richert
93799ec641 w3nco: remove 'generated' tags (which are correct) (#45457) 2024-08-02 11:13:33 +02:00
Alex Richert
dddc056a29 prod-util: remove 'generated' tags (which are correct) (#45452) 2024-08-02 11:13:03 +02:00
Alex Richert
3e6d9cdc06 g2tmpl: remove 'generated' tags (which are correct) (#45443) 2024-08-02 11:12:29 +02:00
Alex Richert
091786411b grib-util: remove 'generated' tags (which are correct) (#45445) 2024-08-02 11:11:26 +02:00
Alex Richert
4af09dd506 ip2: remove 'generated' tags (which are correct) (#45447) 2024-08-02 11:10:53 +02:00
Adam J. Stewart
2626bff96d py-numpy: "@1.23:" add conflict for "%gcc@:6.4" (#45468) 2024-08-02 10:33:37 +02:00
jgraciahlrs
9ef1d609e2 py-markupsafe: add depends_on("python@3.7:", when="@2.0:") (#45503)
As per PyPI, recent versions of py-markupsafe (>=2) require Python >=3.7.
2024-08-02 10:28:25 +02:00
Wouter Deconinck
4c60deb992 xrootd: add github as secondary url to avoid SSL issues (#45512) 2024-08-02 10:24:00 +02:00
Adam J. Stewart
53bc782278 pthreadpool: use same flags as PyTorch (#45521) 2024-08-02 10:11:24 +02:00
Wouter Deconinck
4e087349a4 py-particle: add v0.23.1, v0.24.0 (#45528)
* py-particle: add v0.23.1, v0.24.0

* [@spackbot] updating style on behalf of wdconinc

---------

Co-authored-by: wdconinc <wdconinc@users.noreply.github.com>
2024-08-02 10:04:56 +02:00
Juan Miguel Carceller
53815b725a groff: Add missing depends_on("m4") (#45552) 2024-08-02 09:45:44 +02:00
eugeneswalker
e8c8e7b8a8 e4s oneapi ci: try enabling some disabled specs (#45355) 2024-08-01 21:25:30 -07:00
Seth R. Johnson
b781ce5b0f libspng: add maintainer, fix dependencies, args (#45410)
* libspng: add maintainer, fix dependencies, args

* Update var/spack/repos/builtin/packages/libspng/package.py

Co-authored-by: Alec Scott <hi@alecbcs.com>

* Fix syntax error

* Update var/spack/repos/builtin/packages/libspng/package.py

---------

Co-authored-by: Alec Scott <hi@alecbcs.com>
2024-08-01 21:03:27 -06:00
Juan Miguel Carceller
a3c3f4c3d1 root: Add patch to fix TUri (#45428)
Co-authored-by: jmcarcell <jmcarcell@users.noreply.github.com>
2024-08-01 19:40:15 -07:00
Diego Alvarez S.
445b6dfcf8 Add blast+ v2.15.0, v2.16.0 (#45425) 2024-08-01 19:39:03 -07:00
Wouter Deconinck
b2ef64369f perl: add v5.40.0 (#45287)
Co-authored-by: Bernhard Kaindl <bernhardkaindl7@gmail.com>
2024-08-01 20:33:41 -06:00
Juan Miguel Carceller
a8d2ea68f5 gaudi: add versions 38.2 and 38.3 and limit the version of fmt (#45466)
Co-authored-by: jmcarcell <jmcarcell@users.noreply.github.com>
2024-08-01 19:20:22 -07:00
afzpatel
c7a437573b py-tensorflow: change url for 2.16.1-rocm-enhanced (#45539)
* change url for 2.16.1-rocm-enhanced

* fix typo
2024-08-01 19:51:33 -06:00
Chris Marsh
5736d1e206 py-xarray: Update and ensure dask compatibility (#45537)
* Add 2024.7 and new +viz variant as per pyproject.toml

* Ensure dask/xarray versions are compatible
2024-08-01 18:21:28 -07:00
Teague Sterling
e110e3c3af py-zstandard: new package (#45388)
Signed-off-by: Teague Sterling <teaguesterling@gmail.com>
Co-authored-by: Bernhard Kaindl <bernhardkaindl7@gmail.com>
2024-08-01 18:43:10 -06:00
Teague Sterling
e2d8b581db py-glean-parser: new package (#45390)
Signed-off-by: Teague Sterling <teaguesterling@gmail.com>
Co-authored-by: Bernhard Kaindl <bernhardkaindl7@gmail.com>
2024-08-01 18:37:35 -06:00
Thomas Madlener
10a4de8e04 edm4hep: Add v0.99 release and deprecate older versions (#45516)
* edm4hep: Add v0.99 and deprecated older versions

* edm4hep: Fix nlohmann-json dependency version

* Keep 0.10.5 undeprecated
2024-08-01 18:26:42 -06:00
Todd Gamblin
96ddbd5e17 format: allow spaces in format specifiers (#45487)
* format: allow spaces in format specifiers

Key-value pair format specifiers can now contain spaces in the key. This allows us to
add spaces to format strings that are *only* present when the attribute formatted is not
``None``. Instead of writing:

```
    {arch=architecture}
```

and special casing `arch=` like a sigil in `Spec.format()`, we can now write:

```
    { arch=architecture}
```

And the space is *only* printed when `architecture` is not `None`. This allows us to
remove the special case in `Spec.format()` for `arch=`.

Previously the only `key=` prefix allowed in format specifiers was `arch=`, but this PR
removes that requirement, and the `key=` part of a key-value specifier can be any name.
It does *not* have to correspond to the formatted attribute.

- [x] modify `SPEC_FORMAT_RE` to allow arbitrary keys in key-value pairs.
- [x] remove special case for `arch=` from `Spec.format()`.
- [x] modify format strings using `{arch=architecture}` to use `{ arch=architecture}`
- [x] add more tests for formatting

This PR saves other more complex attributes like compiler flags and their spacing for later.

Signed-off-by: Todd Gamblin <tgamblin@llnl.gov>
2024-08-01 18:20:43 -06:00
Stephen Nicholas Swatman
65b530e7ec detray: add versions 0.70.0 through 0.72.1 (#45541)
* detray: add versions 0.69.1 through 0.72.1

This commit adds four new versions of the detray package.

* Remove v0.69.0
2024-08-01 17:55:58 -06:00
Auriane R.
de98e3d6e5 Update if ... in spec with satisfies in a* dirs (#44822) 2024-08-01 18:21:37 -05:00
John W. Parent
ffcb4ee487 Windows msvsc: Report accurate platform toolset version for VS2022 (#45525)
VC toolset versions 144 and 143 are both associated with the platform
toolset 143; this deviates from prior version choices made by the
MSVC devs; add a special case to report platform toolset version
as 143 when VC toolset version is >= 143 (this will need revisiting
for later releases).
2024-08-01 11:27:17 -07:00
Teague Sterling
bfba3c9d5c py-attrs: add v17.4.0 (#45385)
Signed-off-by: Teague Sterling <teaguesterling@gmail.com>
2024-08-01 11:04:37 -07:00
Teague Sterling
37e56ea24d py-pyrsistent: add v0.14.0 (#45387)
* py-pyrsistent: add v0.1.4.0 & conflict

Signed-off-by: Teague Sterling <teaguesterling@gmail.com>

* Update package.py

---------

Signed-off-by: Teague Sterling <teaguesterling@gmail.com>
2024-08-01 10:52:20 -07:00
Alex Richert
453e8c71ac ip: add v5.1.0 (#45331)
* ip: add v5.1.0

* [@spackbot] updating style on behalf of AlexanderRichert-NOAA

* Update package.py

* Update package.py
2024-08-01 10:33:13 -07:00
James Taliaferro
e669fcafd0 kakoune: add v2024.05.18 (#45460)
* update Kakoune, explicitly make install dirs first

* blacken
2024-08-01 09:40:28 -07:00
Stephen Hudson
2dbbcf3ca5 py-libensemble: add v1.4.0, v1.4.1 (#45463)
* libEnsemble: add v1.4.0

* libEnsemble: add v1.4.1
2024-08-01 09:39:10 -07:00
Christopher Christofi
bce710eec1 py-flax: add v0.8.5 (#45480) 2024-08-01 09:09:00 -07:00
Thomas Madlener
64a69796e2 lcio: add v2.22.1 (#45517)
* lcio: add latest version 2.22.1

* lcio: update sio dependency to match actual requirements
2024-08-01 08:56:04 -07:00
rfbgo
dd460a0eb0 py-torch-nvidia-apex: add v22.03 -> v24.04.01 (#45176) 2024-08-01 11:47:45 +02:00
Manuela Kuhn
475fe9977a py-rsatoolbox: add v0.1.5 (#45484) 2024-08-01 10:53:41 +02:00
Adam J. Stewart
b86e42a5aa py-sphinx: add v8.0 (#45520) 2024-08-01 08:40:29 +02:00
Claudia Comito
9f04c45dea py-heat: add v1.4.2 (#45317) 2024-08-01 05:38:30 +02:00
Szabolcs Horvát
20e6b60fce py-igraph: add 0.11.6 (#45132) 2024-08-01 05:34:20 +02:00
Teague Sterling
5f86ee5d93 scala: add v2.12.13 -> v2.12.19, v2.13.10, 2.13.14 (#45477)
Signed-off-by: Teague Sterling <teaguesterling@gmail.com>
2024-08-01 05:18:46 +02:00
Wouter Deconinck
84ad509621 py-onnxruntime: add v1.17.3 (#44500) 2024-08-01 04:17:56 +02:00
Rémi Lacroix
ea0da49acb OpenFOAM-org: Add missing dependency on readline for @:9 (#44482)
The setSet tool (removed in version 10) has an optional dependency on readline.
The build script will use the system readline if not provided by Spack.
2024-08-01 03:59:00 +02:00
Christopher Christofi
e77fbfe8f8 py-jaxtyping: new package (#45482) 2024-08-01 03:50:48 +02:00
Teague Sterling
d485650369 py-build: new package (#45478)
Signed-off-by: Teague Sterling <teaguesterling@gmail.com>
2024-08-01 03:47:33 +02:00
Melven Roehrig-Zoellner
c1f22ca5cb tixi: add python variant (sets PYTHONPATH and LD_LIBRARY_PATH) (#44592) 2024-08-01 03:44:11 +02:00
Melven Roehrig-Zoellner
c5d1c9ae61 t8code: fix build with gcc14 2024-08-01 03:26:56 +02:00
Melven Roehrig-Zoellner
d8184b37a3 py-pylint-gitlab: new package 2024-08-01 03:20:40 +02:00
Melven Roehrig-Zoellner
bd952a552f py-anybadge: new package 2024-08-01 03:20:40 +02:00
Cameron Smith
aa171a6cc9 omegah: Update c/c++ language deps (#45303)
Signed-off-by: Cameron Smith <smithc11@rpi.edu>
2024-08-01 03:06:00 +02:00
Alex Richert
e4ee59741e grib-util: Add 1.5.0 (#45310) 2024-08-01 02:23:31 +02:00
Manuela Kuhn
b3b9f4d4b7 py-pybv: new package (#45370) 2024-08-01 02:07:11 +02:00
Manuela Kuhn
c1f2b36854 py-edfio: add v0.4.3 and py-poetry-dynamic-versioning: add v1.4.0, fix url (#45369) 2024-08-01 02:06:05 +02:00
Vincent Michaud-Rioux
87494d2941 py-pennylane: Add 0.36 and 0.37 with deps (#45134) 2024-07-31 22:55:02 +02:00
Ian Lumsden
ad26dcfbfc flux-core,flux-sched: fix environments with external flux (#44775) 2024-07-31 21:36:51 +02:00
Vlad Savelyev
5541a184d5 py-multiqc: add v1.23 (#45325) 2024-07-31 21:16:21 +02:00
Manuela Kuhn
f1140055d0 py-pymatreader: Add v0.0.32 (#45366) 2024-07-31 21:06:15 +02:00
Manuela Kuhn
88782fb05a py-eeglabio: new package (#45372) 2024-07-31 21:04:44 +02:00
Manuela Kuhn
69d216a88e py-edflib-python: new package (#45371) 2024-07-31 21:03:26 +02:00
Wouter Deconinck
04f0af0a28 acts,dd4hep: restrict to podio@0 to prevent failures with podio@1 (#44825)
* dd4hep: restrict to podio@0 to prevent failures with podio@1

* acts: restrict to podio@0 to prevent failures with podio@1

* dd4hep: close when range for podio

* acts: close when range for podio

* acts: fix when range for podio

* acts: close when range for podio

* acts,dd4hep: ensure main/master still depends on podio
2024-07-31 20:51:38 +02:00
Wouter Deconinck
c71c7735fd py-globus-sdk: add through v3.42; pypi now uses underscores (#45349) 2024-07-31 20:48:06 +02:00
Teague Sterling
89bc483c87 py-cffi: add v1.16.0 (#45386)
Signed-off-by: Teague Sterling <teaguesterling@gmail.com>
2024-07-31 20:16:49 +02:00
Felix Thaler
62d2e8d1f4 libvterm: Fix download: Use download from launchpad.net (#45094) 2024-07-31 19:14:18 +02:00
ron minnich
12abc233d0 mpigraph: new package (LLNL mpigraph) (#45121)
Signed-off-by: Ron Minnich <rminnich@google.com>
2024-07-31 19:08:48 +02:00
Andrew W Elble
c30c5df340 libxcb: xcb-proto is a build dependency (#45523) 2024-07-31 10:48:21 -04:00
Mikael Simberg
4a088f717e pika: add v0.26.1 (#45515) 2024-07-31 02:52:55 -06:00
Christopher Christofi
9a10538f6d openslide: add new version 4.0.0 (#42158)
* openslide: add new version 4.0.0

* openslide: update dependency organization
2024-07-31 09:27:34 +01:00
arezaii
c753446353 Chapel package: updates post release (#45304)
* Fix +rocm variant, to ensure correct dependencies on ROCm packages
  and use of AMD LLVM
* Add a +pshm variant for comm=gasnet to enable fast shared-memory
  comms between co-locales
* Add logic to ensure we get the native CXI libfabric network provider
  on Cray EX
* Expand dependency type for package modules to encompass runtime
  dependencies
* Factor logic for setting (LD_)LIBRARY_PATH and PKG_CONFIG_PATH of
  runtime dependencies
* Workaround issue #44746 that causes a transitive dependency on lua
  to break SLURM
* Disable nonfunctional checkChplDoc test
* Annotate some variants as conditional, to improve spack info output
  and reduce confusion

---------

Co-authored-by: Dan Bonachea <dobonachea@lbl.gov>
2024-07-30 18:24:56 -07:00
Chris Marsh
65a15c6145 Mac OS UUID virtual: platform-specific virtuals not correctly prioritized (#43002)
`apple-libuuid` includes types that aren't available in other `uuid`
providers; this cause issues in consuming packages (e.g., py-matplotlib)
that use SDKs like CarbonCore.framework when they attempt to use
`util-linux-uuid` as a `uuid` provider on Mac OS.

Tweak `util-linux-uuid` to indicate that it does not provide `uuid`
on Mac OS.
2024-07-30 11:38:07 -06:00
dependabot[bot]
e563f84ae2 build(deps): bump docker/setup-buildx-action from 3.5.0 to 3.6.1 (#45495)
Bumps [docker/setup-buildx-action](https://github.com/docker/setup-buildx-action) from 3.5.0 to 3.6.1.
- [Release notes](https://github.com/docker/setup-buildx-action/releases)
- [Commits](aa33708b10...988b5a0280)

---
updated-dependencies:
- dependency-name: docker/setup-buildx-action
  dependency-type: direct:production
  update-type: version-update:semver-minor
...

Signed-off-by: dependabot[bot] <support@github.com>
Co-authored-by: dependabot[bot] <49699333+dependabot[bot]@users.noreply.github.com>
2024-07-30 07:57:15 -07:00
Teague Sterling
622ad1ddd7 perl-bio-ensembl-funcgen: new package (#44508)
* Adding the perl-bio-ensembl-funcgen package

* Update package.py

* Update package.py
2024-07-30 11:17:29 +01:00
jmlapre
1bd17876ed trilinos: add v16.0.0 (#45402) 2024-07-29 23:23:11 -06:00
Richard Berger
a789689709 py-furo: add new versions (#45439) 2024-07-29 19:58:43 -06:00
Teo
171a2e0e31 add new maintainer (#45436) 2024-07-29 19:58:14 -06:00
Seth R. Johnson
66d3fddedf Remove maintainership from packages I have no stake in (#45435) 2024-07-29 16:23:00 -06:00
RichardBuntLinaro
14a3b13900 linaro-forge: added 24.0.3 version (#45430) 2024-07-29 09:31:14 -06:00
Teague Sterling
40d41455db perl-bio-ensembl: new package (#44506)
* Adding perl-bio-ensembl package

* Fixing checksums

* Update package.py
2024-07-29 13:33:09 +01:00
Todd Gamblin
d63ead25ac add spack audit configs to ci
Signed-off-by: Todd Gamblin <tgamblin@llnl.gov>
2024-07-29 01:30:14 -07:00
Todd Gamblin
4a35dec206 wasi-sdk: add default provider
This was missed in #45394 because we don't run unit tests for package PRs, and
`test_all_virtual_packages_have_default_providers`, which would've caught it, is a unit
test, not an audit.

- [x] add a default provider for `wasi-sdk` in `etc/spack/defaults/packages.yaml` (which
      we require for all virtuals)
- [x] rework `test_all_virtual_packages_have_default_providers` as an audit called
      `_ensure_all_virtual_packages_have_default_providers`

Signed-off-by: Todd Gamblin <tgamblin@llnl.gov>
2024-07-29 01:30:14 -07:00
Matt Jolly
c294b9d3b9 meson: add v1.4.2, v1.5.1 (#45384)
Also deprecate old and superseded versions
2024-07-29 09:02:48 +02:00
AcriusWinter
057b415074 pinentry: old to new test API (#45011)
* pinentry: New API
* move code around
* added back version check
* Complete check_version refactor
* Honor original handling of guis (i.e., don't try if not there)

---------

Co-authored-by: Tamara Dahlgren <dahlgren1@llnl.gov>
2024-07-26 14:07:06 -06:00
Manuela Kuhn
3180b28d76 py-mne: add v1.7.1 (#45400)
* py-mne: add v1.7.1
* fix style
2024-07-26 12:04:58 -07:00
Walter de Jong
b47c31509d apptainer: add v1.3.2, v1.3.3 (#45398)
* upgrade apptainer: security fix
  apptainer 1.3.1 has a high severity security issue: CVE-2024-3727
  Upgrade to 1.3.2 or preferably 1.3.3
* added comment for 1.3.1

---------

Co-authored-by: Walter de Jong <walter.dejong@surf.nl>
2024-07-26 08:51:30 -07:00
Sreenivasa Murthy Kolam
f99a5ef2e7 Fix build failure when kokkos +rocm is enabled. (#44459)
* fix kokkos +rocm build failure

* address review comments

* address review comments . revert the previous changes

* address review comments. Add rocthrust for 4.3 version onwards
2024-07-26 06:44:06 -07:00
Wouter Deconinck
690bcf5d47 intel-oneapi-compilers: update description with current compilers (#45348)
* intel-oneapi-compilers: update description with current compilers

* Update var/spack/repos/builtin/packages/intel-oneapi-compilers/package.py

Co-authored-by: Robert Cohn <robert.s.cohn@intel.com>

* intel-oneapi-compilers: break docstring line

---------

Co-authored-by: Robert Cohn <robert.s.cohn@intel.com>
2024-07-26 07:20:21 -06:00
AcriusWinter
1e6bef079d kokkos: new test API (#45010)
* kokkos: new test API
* kokkos: added import llnl.util.lang as lang because earlier versions couldn't be installed without it

---------

Co-authored-by: Tamara Dahlgren <35777542+tldahlgren@users.noreply.github.com>
2024-07-25 18:39:24 -07:00
AcriusWinter
564155fd1a povray: new test API (#45174)
* povray: new test API
* capture output and test name change
* povray: add v3.7.0.10, deprecate 3.7.0.8

---------

Co-authored-by: Tamara Dahlgren <dahlgren1@llnl.gov>
2024-07-25 17:51:34 -07:00
AcriusWinter
f371b6f06c umpire: old to new test API and refactor (#44957)
* umpire: old to new test format
* umpire: old to new test method and refactor
* indentation
* black reformat
* last minute syntax
* docstring and checks
* black format
* change test name
* method call correction
* Resolve problem with stand-alone tests (or examples) not loading library (Fixes #44960)

---------

Co-authored-by: Tamara Dahlgren <dahlgren1@llnl.gov>
2024-07-25 17:47:44 -07:00
Howard Pritchard
0f9434fca4 openmpi: add v5.0.4 and v5.0.5 (#45305)
* Open MPI: add release 5.0.4
* OpenMPI: add release 5.0.5
   needed quick turnaround owing to
   https://github.com/open-mpi/ompi/issues/12693

---------

Signed-off-by: Howard Pritchard <howardp@lanl.gov>
2024-07-25 15:14:37 -07:00
Martin Diehl
235831a035 damask 3.0.0 and 3.0.0-beta2 (#45405) 2024-07-25 14:03:09 -07:00
Teague Sterling
4240748cea wasi-sdk-prebuilt: new package (#45394)
* wasi-sdk-prebuilt: new package
* move url_for_version to be first method

---------

Signed-off-by: Teague Sterling <teaguesterling@gmail.com>
2024-07-25 12:56:35 -07:00
John W. Parent
934e34fbd6 CMake package: add versions 3.30.0 and 3.30.1 (#45418) 2024-07-25 10:39:56 -06:00
Adam J. Stewart
ea42d18506 libgcrypt: add patch for avx512 support (#45432) 2024-07-25 15:57:18 +02:00
Andrew W Elble
2b763ff2db py-tensorflow: alter gcc conflict, fix build (#45330) 2024-07-25 08:22:48 +02:00
AcriusWinter
c6cc97953b sz: new test API (#45363)
* sz: new test API
* fix typo; check installed executable; conform to subpart naming convention
* skip tests early if not installed; remove unnecessary "_sz" from test part names

---------

Co-authored-by: Tamara Dahlgren <dahlgren1@llnl.gov>
2024-07-24 19:09:57 -06:00
Tamara Dahlgren
ff144df549 strumpack: make standalone test for +mpi more robust (#44943)
* strumpack: make standalone test for +mpi more robust
* Comment about which MPI launcher being attempted
2024-07-24 17:57:12 -07:00
Teo
f3acf201c4 halide: add v18.0.0 (#45401)
* Added Halide 18
* Fix style+other stuff
* Accept compiler deps
* 17.0.2 too
* reorder versions
2024-07-24 16:22:51 -07:00
John W. Parent
e5364ea832 Netlib-lapack package: search for correct library names on Windows (#45417)
Library names on Windows are not typically prefixed with lib; the default
`.libs` implementation accounts for this, but `netlib-lapack` has a
custom implementation of `.libs` that did not account for this.
2024-07-24 13:28:30 -07:00
dependabot[bot]
53b8f91c02 build(deps): bump docker/login-action from 3.2.0 to 3.3.0 (#45378)
Bumps [docker/login-action](https://github.com/docker/login-action) from 3.2.0 to 3.3.0.
- [Release notes](https://github.com/docker/login-action/releases)
- [Commits](0d4c9c5ea7...9780b0c442)

---
updated-dependencies:
- dependency-name: docker/login-action
  dependency-type: direct:production
  update-type: version-update:semver-minor
...

Signed-off-by: dependabot[bot] <support@github.com>
Co-authored-by: dependabot[bot] <49699333+dependabot[bot]@users.noreply.github.com>
2024-07-24 13:40:12 -04:00
Todd Gamblin
a841ddd00c spack pkg grep: don't warn when grepping for quoted strings (#45412)
The `Executable` class emits a warning when you pass quoted arguments to it:

```
> spack pkg grep '"namespace"'
==> Warning: Quotes in command arguments can confuse scripts like configure.
  The following arguments may cause problems when executed:
      "namespace"
  Quotes aren't needed because spack doesn't use a shell. Consider removing them.
  If multiple levels of quotation are required, use `ignore_quotes=True`.
```

This is to warn new package authors who aren't used to calling build commands in python.
It's not useful for `spack pkg grep`, where we really are passing args on the command
line, and if we pass a quoted string, we probably meant to.

- [x] make `ignore_quotes` an instance variable, not just an argument to ``__call__`
- [x] set `ignore_quotes` to `True` in `spack pkg grep`

Signed-off-by: Todd Gamblin <tgamblin@llnl.gov>
2024-07-24 08:11:32 -07:00
snehring
39455768b2 hybpiper: change package type, add version 2.1.8 (#45262)
Signed-off-by: Shane Nehring <snehring@iastate.edu>
2024-07-24 09:16:54 -05:00
afzpatel
e529a454eb CI: add ML ROCm stack (#45302)
* add ML ROCm stack

* add suggested changes

* remove py-torch and py-tensorflow-estimator

* add TF_ROCM_AMDGPU_TARGETS env variable and remove packages from pipeline

* remove py-jax and py-xgboost
2024-07-24 16:16:15 +02:00
AcriusWinter
1b5dc396e3 uftrace: change to executable declaration (#45403) 2024-07-23 18:32:06 -06:00
Wouter Deconinck
15a3ac0512 py-arrow: add v1.3.0 (switch to flit-core) (#45123) 2024-07-23 17:50:21 -06:00
Thomas Applencourt
52f149266f ruby: add v3.3.4 (#45334)
* Ruby Add 3.3.4

* Update package.py

* Update package.py
2024-07-23 17:38:52 -06:00
Teague Sterling
8d33c2e7c0 generate-ninja: new package (#45391)
Signed-off-by: Teague Sterling <teaguesterling@gmail.com>
2024-07-23 14:47:04 -07:00
Karol Krizka
b3d82dc3a8 ROOT should add_include_path virtual glu for consistency. (#45057) 2024-07-23 14:12:54 -05:00
eugeneswalker
0fb44529bb e4s rocm external ci stack: upgrade to v6.1.2 (#45356)
* e4s rocm external ci stack: upgrade to v6.1.2

* magma: add rocm-core 6.1.2
2024-07-23 09:52:52 -07:00
dependabot[bot]
6ea944bf17 build(deps): bump pytest from 8.2.2 to 8.3.1 in /lib/spack/docs (#45377)
Bumps [pytest](https://github.com/pytest-dev/pytest) from 8.2.2 to 8.3.1.
- [Release notes](https://github.com/pytest-dev/pytest/releases)
- [Changelog](https://github.com/pytest-dev/pytest/blob/main/CHANGELOG.rst)
- [Commits](https://github.com/pytest-dev/pytest/compare/8.2.2...8.3.1)

---
updated-dependencies:
- dependency-name: pytest
  dependency-type: direct:production
  update-type: version-update:semver-minor
...

Signed-off-by: dependabot[bot] <support@github.com>
Co-authored-by: dependabot[bot] <49699333+dependabot[bot]@users.noreply.github.com>
2024-07-23 11:53:55 -04:00
dependabot[bot]
8c6177c47f build(deps): bump sphinx from 7.4.6 to 7.4.7 in /lib/spack/docs (#45376)
Bumps [sphinx](https://github.com/sphinx-doc/sphinx) from 7.4.6 to 7.4.7.
- [Release notes](https://github.com/sphinx-doc/sphinx/releases)
- [Changelog](https://github.com/sphinx-doc/sphinx/blob/master/CHANGES.rst)
- [Commits](https://github.com/sphinx-doc/sphinx/compare/v7.4.6...v7.4.7)

---
updated-dependencies:
- dependency-name: sphinx
  dependency-type: direct:production
  update-type: version-update:semver-patch
...

Signed-off-by: dependabot[bot] <support@github.com>
Co-authored-by: dependabot[bot] <49699333+dependabot[bot]@users.noreply.github.com>
2024-07-23 11:53:43 -04:00
dependabot[bot]
b65d9f1524 build(deps): bump docker/setup-buildx-action from 3.4.0 to 3.5.0 (#45379)
Bumps [docker/setup-buildx-action](https://github.com/docker/setup-buildx-action) from 3.4.0 to 3.5.0.
- [Release notes](https://github.com/docker/setup-buildx-action/releases)
- [Commits](4fd812986e...aa33708b10)

---
updated-dependencies:
- dependency-name: docker/setup-buildx-action
  dependency-type: direct:production
  update-type: version-update:semver-minor
...

Signed-off-by: dependabot[bot] <support@github.com>
Co-authored-by: dependabot[bot] <49699333+dependabot[bot]@users.noreply.github.com>
2024-07-23 11:53:18 -04:00
dependabot[bot]
03e5dddf24 build(deps): bump docker/build-push-action from 6.4.1 to 6.5.0 (#45380)
Bumps [docker/build-push-action](https://github.com/docker/build-push-action) from 6.4.1 to 6.5.0.
- [Release notes](https://github.com/docker/build-push-action/releases)
- [Commits](1ca370b3a9...5176d81f87)

---
updated-dependencies:
- dependency-name: docker/build-push-action
  dependency-type: direct:production
  update-type: version-update:semver-minor
...

Signed-off-by: dependabot[bot] <support@github.com>
Co-authored-by: dependabot[bot] <49699333+dependabot[bot]@users.noreply.github.com>
2024-07-23 11:53:04 -04:00
dependabot[bot]
7bb892f7b3 build(deps): bump docker/setup-qemu-action from 3.1.0 to 3.2.0 (#45381)
Bumps [docker/setup-qemu-action](https://github.com/docker/setup-qemu-action) from 3.1.0 to 3.2.0.
- [Release notes](https://github.com/docker/setup-qemu-action/releases)
- [Commits](5927c834f5...49b3bc8e6b)

---
updated-dependencies:
- dependency-name: docker/setup-qemu-action
  dependency-type: direct:production
  update-type: version-update:semver-minor
...

Signed-off-by: dependabot[bot] <support@github.com>
Co-authored-by: dependabot[bot] <49699333+dependabot[bot]@users.noreply.github.com>
2024-07-23 11:52:42 -04:00
Wouter Deconinck
66ed8ebbd9 gh: convert to GoPackage (#45351)
* gh: convert to GoPackage

* gh: fix style
2024-07-23 11:49:05 -04:00
Wouter Deconinck
0d326f83b6 GoPackage: default -modcacherw to ensure stage cleanup (#45350) 2024-07-23 11:48:52 -04:00
Dom Heinzeller
fc0955b125 Update and clean up hdf-eos2 package.py to fix build errors with Intel oneAPI (#45399) 2024-07-23 07:54:12 -07:00
Mikael Simberg
13ba1b96c3 fmt: add 11.0.2 (#45396) 2024-07-23 07:46:45 -07:00
Mikael Simberg
d66d169027 Remove # generated comments from many packages, add some missing depends_on("cxx") (#45395) 2024-07-23 10:31:22 +02:00
Manuela Kuhn
6decd6aaa1 py-mne-bids: add new package (#45374) 2024-07-22 17:11:18 -06:00
AcriusWinter
3c0ffa8652 uftrace: new test API, add 0.16 with libtraceevent, fix build (#45364)
Co-authored-by: Bernhard Kaindl <bernhardkaindl7@gmail.com>
2024-07-22 16:31:38 -06:00
Christoph Junghans
4917e3f664 votca: add v2024.1 (#45341) 2024-07-22 14:22:46 -06:00
Adam J. Stewart
b2a14b456e py-numpy: add v2.0.1 (#45354) 2024-07-22 14:04:09 -06:00
Teague Sterling
ab1580a37f linux-pam: add v1.5.1, v1.5.3, v1.6.0, v1.6.1 and additional variants (#45344)
* package/linux-pam: dependencies
* Adding variants to linux-pam
* Updating linux-pam variants
* Fixing variants for linux-pam after testing
* clean up flag handling
* clean up terrible tabs
* cant use default_args for compiler dependencies
* Change selinux to off by default

---------

Signed-off-by: Teague Sterling <teaguesterling@gmail.com>
2024-07-22 12:57:39 -07:00
Teague Sterling
c1f979cd54 libwnck: new package (#44641) 2024-07-22 21:27:45 +02:00
Teague Sterling
d124338ecb libgudev: new package (#44639) 2024-07-22 21:24:42 +02:00
Brad Geltz
d001f14514 geopm: Add v3.1 and update the needed dependencies (#44793) 2024-07-22 21:23:11 +02:00
Jordan Galby
c43205d6de asciidoc: Fix asciidoc@10 install (#44926) 2024-07-22 21:16:08 +02:00
snehring
54f1af5a29 libint: Fix build for 2.6.0, add libs property (#45034)
Signed-off-by: Shane Nehring <snehring@iastate.edu>
2024-07-22 20:55:34 +02:00
Alex Seaton
350661f027 heyoka: add current 4.0.x and 5.0.0 releases (#45314) 2024-07-22 20:16:39 +02:00
Philipp Edelmann
3699df2651 rayleigh: add v1.2.0 (#45333) 2024-07-22 20:05:44 +02:00
Andrew W Elble
63197fea3e dedisp: fix preinstall: it only takes self (#45328)
too many arguments here, only takes "self".
2024-07-22 20:00:14 +02:00
Martin Lang
f044194b06 libvdwxc: Fix configure with gcc-14 (#45093) 2024-07-22 19:54:49 +02:00
William Moses
29302c13e9 Update Enzyme to 0.0.135 (#45346) 2024-07-22 09:35:40 -07:00
Diego Alvarez S.
c4808de2ff Add nextflow 24.04.3 (#45357) 2024-07-22 09:29:46 -07:00
Alex Leute
c390a4530e py-colored: Added new version (#45361) 2024-07-22 09:17:13 -07:00
Teague Sterling
be771d5d6f node-js: add v17.9.1, v20.15.0, v21.7.3, v22.3.0, v22.4.0 (#45007)
* Adding new versions and compilation conflict for nodejs
* Update failed version for gcc14
* Updating conflicts notes for correctness/clarity/format
* Applying spack-ized versions of fix in https://github.com/nodejs/node/issues/52223 to adddress CI failures
* Update fix-old-glibc-random-headers.patch
* Update package.py
* Update fix-old-glibc-random-headers.patch
* Update fix-old-glibc-random-headers.patch
* Adding conflict for older glibc
* Fixing patch for older systems, need to undef
* Removing overly strict conflicts

---------

Signed-off-by: Teague Sterling <teaguesterling@gmail.com>
2024-07-22 08:32:34 -07:00
Wouter Deconinck
8b45fa089e geant4: support Qt5 and Qt6 (#45352)
* geant4: support qt5 and qt6
* geant4: update conflict msg
2024-07-22 13:38:46 +01:00
dependabot[bot]
0d04223ccd build(deps): bump mypy from 1.10.1 to 1.11.0 in /lib/spack/docs (#45337)
Bumps [mypy](https://github.com/python/mypy) from 1.10.1 to 1.11.0.
- [Changelog](https://github.com/python/mypy/blob/master/CHANGELOG.md)
- [Commits](https://github.com/python/mypy/compare/v1.10.1...v1.11)

---
updated-dependencies:
- dependency-name: mypy
  dependency-type: direct:production
  update-type: version-update:semver-minor
...

Signed-off-by: dependabot[bot] <support@github.com>
Co-authored-by: dependabot[bot] <49699333+dependabot[bot]@users.noreply.github.com>
2024-07-20 11:25:31 -05:00
Peter Scheibel
5ef222d62f Testing: omit test on windows (#45340)
Re-disable a test that was enabled in #45031
2024-07-20 00:32:37 -07:00
Nicole C.
6810e9ed2e Windows Tests: enable more cmd tests on Windows (#45031)
* Several tests can be enabled on Windows with no changes to logic
  (either the test logic or logic being tested)
* Test for `spack location` requires modification of the test logic,
  but with a minor change can be enabled on Windows
2024-07-19 18:08:28 -07:00
Andrew W Elble
a6c638d0fa sqlite: fix AttributeError when +functions (#45327)
using self.compiler.cc_pic_flag here results in these errors:

==> sqlite: Executing phase: 'install'
==> Error: AttributeError: 'AutotoolsBuilder' object has no attribute 'compiler'

change it to self.pkg.compiler.cc_pic_flag instead.
2024-07-19 16:24:22 -06:00
Rémi Lacroix
fa8a512945 NCCL: add version 2.22.3-1. (#45322) 2024-07-19 12:18:16 -06:00
Wouter Deconinck
24b73da9e6 docs: util/environment.py: use re.Pattern[str] instead of re (#45329)
* docs: util/environment.py: use `re.Pattern[str]` instead of `re`

* docs: sphinx==7.4.6
2024-07-19 20:03:07 +02:00
afzpatel
4447d3339c change 2.16-rocm-enhanced to 2.16.1-rocm-enhanced (#45320) 2024-07-19 09:45:31 -06:00
Alex Leute
d82c9e7f2a usearch: new version (#45308)
* usearch: new versison
   Manual download no longer reqired for @12:
2024-07-19 01:42:58 -06:00
AcriusWinter
6828a7402a improved-rdock: new test API (#45239)
* imoroved-rdock: new test API
* Make test subpart names and or descriptions more accurate

---------

Co-authored-by: Tamara Dahlgren <35777542+tldahlgren@users.noreply.github.com>
2024-07-18 16:06:45 -06:00
dmagdavector
a0d62a40dd sqlite: add some newer releases (#45297)
Included: 3.46.0 (most current), 3.45.3, 3.45.1 (for possible compat with Ubuntu 24.04 LTS), 3.44.2.
2024-07-18 15:06:24 -06:00
eugeneswalker
712dcf6b8d e4s ci: enable some disabled specs (#44934)
* e4s ci: enable some disabled specs

* comment out cp2k +cuda due to unsupported cuda_arch

* comment out dealii+cuda due to concretize error

* work through concretize errors

* e4s: comment out failing builds

* e4s stack: disabled non-building specs

* comment out failing specs

* comment out failing specs

* cleanup comments
2024-07-18 20:58:10 +00:00
Wouter Deconinck
ad1fc34199 rust: rework external find to require both rustc and cargo (#45286)
* rust: rework external find to require both rustc and cargo

* rust: handle unable to parse version

* [@spackbot] updating style on behalf of wdconinc

* rust: not x or not y -> not (x and y)

Co-authored-by: Alec Scott <hi@alecbcs.com>

* rust: pick first rustc found

Co-authored-by: Alec Scott <hi@alecbcs.com>

* rust: list comprehensions

Co-authored-by: Alec Scott <hi@alecbcs.com>

---------

Co-authored-by: wdconinc <wdconinc@users.noreply.github.com>
Co-authored-by: Alec Scott <hi@alecbcs.com>
2024-07-18 14:19:50 -06:00
Adam J. Stewart
ab723b25d0 py-tensorflow: add v2.17.0 (#45201) 2024-07-18 12:54:52 -07:00
Wouter Deconinck
016673f419 py-cryptography: add v41.0.7, v42.0.8; py-setuptools-rust: add v1.7.0, v1.8.1, v1.9.0 (#45282) 2024-07-18 12:18:27 -07:00
Adam J. Stewart
7bc6d62e9b py-sphinx: add v7.4 (#45255) 2024-07-18 12:48:18 -06:00
Bill Williams
fca9cc3e0e Allow remapping of compiler names (#45299)
CCE in spack is Cray on the Score-P configure line. Others can be added.

Co-authored-by: William Williams <william.williams@tu-dresden.de>
2024-07-18 11:48:51 -06:00
snehring
2a178bfbb0 mafft: add version 7.525 (#45258)
Signed-off-by: Shane Nehring <snehring@iastate.edu>
2024-07-18 10:25:53 -07:00
snehring
3381879358 spades: add version 4.0.0 and new variants (#45278)
Signed-off-by: Shane Nehring <snehring@iastate.edu>
2024-07-18 10:24:05 -07:00
Matt Thompson
ed9058618a mapl: add v2.47.1 (#45280)
* mapl: add 2.47.1
* Approve compiler depends_on
2024-07-18 10:21:15 -07:00
Harmen Stoppels
a4c99bad6a git packages: add language dep (#45294) 2024-07-18 19:17:54 +02:00
Pranav Sivaraman
f31f58ff26 magic-enum: add version 0.9.6 (#45284)
* magic-enum: add version 0.9.6
* magic-enum: add maintainer

---------

Co-authored-by: pranav-sivaraman <pranav-sivaraman@users.noreply.github.com>
2024-07-18 10:15:35 -07:00
Wouter Deconinck
f84918da4b harfbuzz: add v9.0.0 (#45290)
* harfbuzz: add v9.0.0
* harfbuzz: do not patch non-existing Makefile beyond v8
2024-07-18 10:10:18 -07:00
Richard Berger
80a237e250 netlib-lapack: add pic variant (#45291) 2024-07-18 10:06:25 -07:00
Cameron Smith
f52d3b26c3 pumi: language dependencies (#45301)
Signed-off-by: Cameron Smith <smithc11@rpi.edu>
2024-07-18 11:04:57 -06:00
AcriusWinter
2029d714a0 rocm-opencl: old to new test API (#45065)
* rocm-opencl: old to new test API
* Run tests from test stage directory

---------

Co-authored-by: Tamara Dahlgren <dahlgren1@llnl.gov>
2024-07-18 09:35:10 -07:00
Alec Scott
31ef1df74f go: remove invalid deps (#45279)
* go: remove invalid deps

* go: add dependencies sed and grep
2024-07-18 09:18:05 -07:00
Richard Berger
00ae96a7cb libmesh: add v1.7.1, and fixes (#45292)
* libmesh: add missing v1.7.1 release

* libmesh: avoid pulling in petsc if only +mpi or +metis is given

* libmesh: add shared variant

Co-authored-by: rbberger <rbberger@users.noreply.github.com>
2024-07-18 13:46:39 +02:00
Seth R. Johnson
8d2a6d6744 sethrj: update maintained package language dependencies (#45289) 2024-07-18 10:55:20 +02:00
Massimiliano Culpo
9443e31b1e Do not initialize previous store state in "use_store" (#45268)
The "use_store" context manager is used to swap the value
of a global variable (spack.store.STORE), while keeping
another global variable consistent (spack.config.CONFIG).

When doing that it tries to evaluate the previous value
of the store, if that was not done already. This is wrong,
since the configuration might be in an "intermediate" state
that was never meant to trigger side effects.

Remove that operation, and add a unit test to
prevent regressions.
2024-07-18 07:18:14 +02:00
Wouter Deconinck
2d8ca8af69 qt-*: add v6.7.1, v6.7.2 (#45288) 2024-07-17 22:03:13 -06:00
dependabot[bot]
de4d4695c4 build(deps): bump docker/build-push-action from 6.4.0 to 6.4.1 (#45283)
Bumps [docker/build-push-action](https://github.com/docker/build-push-action) from 6.4.0 to 6.4.1.
- [Release notes](https://github.com/docker/build-push-action/releases)
- [Commits](a254f8ca60...1ca370b3a9)

---
updated-dependencies:
- dependency-name: docker/build-push-action
  dependency-type: direct:production
  update-type: version-update:semver-patch
...

Signed-off-by: dependabot[bot] <support@github.com>
Co-authored-by: dependabot[bot] <49699333+dependabot[bot]@users.noreply.github.com>
2024-07-17 21:43:12 -06:00
MichaelLaufer
c8cf85223f py-pyfr: add v2.0.3 (#45274)
* py-pyfr: add v2.0.3
2024-07-17 18:36:40 -06:00
Wouter Deconinck
b869538544 environment: handle view root at existing directory better (#45263)
- remove empty dir if exists at view root
- error better if non-empty dir

Co-authored-by: Harmen Stoppels <me@harmenstoppels.nl>
2024-07-17 23:17:30 +02:00
Adam J. Stewart
4710cbb281 py-lightning: setuptools required at run-time (#45260) 2024-07-17 11:11:42 -07:00
Massimiliano Culpo
9ae1014e55 Run minimization of weights only on known targets (#45269)
This prevents excessive output from clingo of the kind:

.../spack/lib/spack/spack/solver/concretize.lp:1640:5-11: info: tuple ignored:
  #sup@2
2024-07-17 11:10:00 -07:00
afzpatel
813c0dd031 hipsparselt, composable-kernel: add netlib-lapack test dependency and enable ck test (#45273)
* add netlib-lapack dependency to hipsparselt and enable ck test
* fix cmake args
2024-07-17 10:49:28 -07:00
Lucas Frérot
91071933d0 tamaas: added version 2.8.0 and petsc variant (#45267)
* tamaas: added version 2.8.0
* tamaas: added +petsc variant for extra solvers
2024-07-17 10:30:40 -07:00
snehring
df5bac3e6c giflib: remove convert call in doc generation (#45276)
Signed-off-by: Shane Nehring <snehring@iastate.edu>
2024-07-17 09:42:20 -07:00
Harmen Stoppels
7b9f8abce5 Add depends_on([c,cxx,fortran]) (#45217)
Add language dependencies `c`, `cxx`, and `fortran`.

These `depends_on` statements are auto-generated based on file extensions found
in source tarballs/zipfiles.

The `# generated` comment can be removed by package maintainers after
validating correctness.
2024-07-17 16:07:43 +02:00
Harmen Stoppels
a2f9d4b6a1 pixman: unconditional --with-pic (#45272) 2024-07-17 16:02:50 +02:00
Harmen Stoppels
77e16d55c1 warpx: fix openpmd backward compat bound (#45271) 2024-07-17 15:31:43 +02:00
Stephen Nicholas Swatman
ecb2442566 detray: new package (#45024)
* detray: new package

This commit adds the detray package, a detector description library for
HEP experiments that is designed to be GPU-friendly.

* Update var/spack/repos/builtin/packages/detray/package.py

Co-authored-by: Wouter Deconinck <wdconinc@gmail.com>

* Update var/spack/repos/builtin/packages/detray/package.py

Co-authored-by: Wouter Deconinck <wdconinc@gmail.com>

---------

Co-authored-by: Wouter Deconinck <wdconinc@gmail.com>
2024-07-17 07:42:19 -05:00
Alec Scott
89c0b4accf libgcrypt: conflict with darwin when @1.11.0 (#45264)
Co-authored-by: Massimiliano Culpo <massimiliano.culpo@gmail.com>
2024-07-16 23:45:13 -06:00
downloadico
8e5b51395a abinit: add version 10.0.7 (#45250)
* abinit: add version 10.0.7
* abinit: simplified version constraint for applying rm_march_settings_v9.patch
2024-07-16 15:08:29 -07:00
AcriusWinter
c2ada0f15a parflow: Old test method to new test method (#44933)
* parflow: Old test method to new test method
* add output checker
* made req. changes
2024-07-16 12:43:31 -07:00
afzpatel
6d3541c5fd fix hipblas test (#44666)
* fix hipblas test
* add rocm-openmp-extras dependencies
2024-07-16 12:39:08 -07:00
snehring
31e4149067 vasp: add new version 6.4.3 and rework package (#44937)
* vasp: add new version 6.4.3 and rework package
* vasp: remove redundant cuda dep
* vasp: bump fftlib variant version restriction
* vasp: honor the still existing scalapack variant

---------

Signed-off-by: Shane Nehring <snehring@iastate.edu>
2024-07-16 12:37:44 -07:00
otsukay
c9fba9ec79 fujitsu.patch is no longer needed for versions>=4.5 (#45154) 2024-07-16 12:18:39 -07:00
Wouter Deconinck
282627714e gaudi: depends_on python +dbm (#45238) 2024-07-16 12:13:17 -07:00
fpruvost
714dd783f9 pastix: new version v6.4.0 (#45246) 2024-07-16 12:06:30 -07:00
Harmen Stoppels
40b390903d gmake: generic CXX, fix build.sh, deprecate 4.0, add 4.1 (#45137)
Co-authored-by: Wouter Deconinck <wdconinc@gmail.com>
2024-07-16 18:58:57 +02:00
Massimiliano Culpo
ce1b569b69 Fix order of deserialization in subprocess context (#45229)
Since the the MetaPathFinder now owns a lazily constructed RepoPath object, we need to deserialize environments before the package that needs to be restored. Before we were relying on globals to be inconsistent in a way that let the entire process go.
2024-07-16 10:15:29 -06:00
Harmen Stoppels
b539eb5aab concretizer: show input specs on error (#45245) 2024-07-16 14:04:56 +02:00
Seth R. Johnson
e992e1efbd Celeritas: new version 0.4.4 (#45234) 2024-07-16 04:23:02 -06:00
Alec Scott
33a52dd836 pass: switch to git based versions to fix changing checksum in tarball (#45237) 2024-07-16 04:18:09 -06:00
Wouter Deconinck
b5f06fb3bc py-mpmath: ad v1.3.0; depends_on py-setuptools for old versions (#45232) 2024-07-16 04:07:40 -06:00
afzpatel
494817b616 correct test binary name (#45240) 2024-07-16 04:03:02 -06:00
Wouter Deconinck
02470a5aae geant4: add v11.3.0.beta (#45087)
* geant4: add v11.3.0.beta

* geant4: vecgeom@1.2.8: when 11.3:

* geant4-data: add v11.3.0

* g4particlexs: add v4.1

* g4emlow: add v8.6

* g4nudexlib, g4urrpt: add v1.0

* [@spackbot] updating style on behalf of wdconinc

* geant4: immediately deprecate geant4-11.3.0.beta

---------

Co-authored-by: wdconinc <wdconinc@users.noreply.github.com>
2024-07-16 10:03:49 +01:00
Massimiliano Culpo
42232a8ab6 Fix error message for test log in child process (#45233)
If we don't have a log, we'll mask the real error with
another caused by using None as an argument to os.path.join
2024-07-16 06:58:36 +02:00
Matthieu Dorier
cb64df45c8 toml11: adds new versions (#45056) 2024-07-16 06:40:45 +02:00
Wouter Deconinck
a11da7bdb9 cmd/dependents.py: remove unused loop over all packages (#45166) 2024-07-16 06:38:01 +02:00
Matthew Lesko
9a22ae11c6 openmpi: fix pmix version check in v5 (#44928)
* OpenMPI 5 w/ PRRTE 3 series PMIX version check fix

OpenMPI fails to compile otherwise when targeting external PMIX 4.2.6 and likely others.

```
  >> 3369    base/ess_base_bootstrap.c:72:14: error: static declaration of 'pmix_getline' follows non-static declaration
     3370       72 | static char *pmix_getline(FILE *fp)
     3371          |              ^
     3372    /opt/pmix/include/pmix/src/util/pmix_string_copy.h:83:19: note: previous declaration is here
     3373       83 | PMIX_EXPORT char *pmix_getline(FILE *fp);
     3374          |                   ^
     3375    1 error generated.
  >> 3376    make[4]: *** [Makefile:820: base/ess_base_bootstrap.lo] Error 1
```

Upstream PRRTE fix (not released yet): https://github.com/openpmix/prrte/pull/1957
Upstream OpenMPI issue: https://github.com/open-mpi/ompi/issues/12537 ("fixed in next release")

Co-authored-by: Shahzeb Siddiqui <shahzebmsiddiqui@gmail.com>
2024-07-16 06:33:12 +02:00
Stephen Sachs
318a7e0e30 wrf: explicit conflict oneapi + older versions (#44787)
The patch which enables icx/ifx compilers is only added for `wrf@4.4:`. This PR prints a useful message at concretization time instead of failing the installation later on.

Co-authored-by: stephenmsachs <stephenmsachs@users.noreply.github.com>
2024-07-16 06:28:54 +02:00
Wouter Deconinck
e976f351f8 py-ipython: depends_on python +sqlite3 when @8: (#45231) 2024-07-16 06:26:41 +02:00
Wouter Deconinck
437341d40e py-nodeenv: depends_on python +ssl (#45225) 2024-07-16 06:23:21 +02:00
dependabot[bot]
9d7ea1a28b build(deps): bump docker/build-push-action from 6.3.0 to 6.4.0 (#45243)
Bumps [docker/build-push-action](https://github.com/docker/build-push-action) from 6.3.0 to 6.4.0.
- [Release notes](https://github.com/docker/build-push-action/releases)
- [Commits](1a162644f9...a254f8ca60)

---
updated-dependencies:
- dependency-name: docker/build-push-action
  dependency-type: direct:production
  update-type: version-update:semver-minor
...

Signed-off-by: dependabot[bot] <support@github.com>
Co-authored-by: dependabot[bot] <49699333+dependabot[bot]@users.noreply.github.com>
2024-07-16 06:14:27 +02:00
AcriusWinter
d85668f096 slate: changed stand-alone test from old to new API (#44953)
* slate: changed from old to new format
* make code tighter
* replace assert method
* SkipTest plus other cleanup

---------

Co-authored-by: Tamara Dahlgren <dahlgren1@llnl.gov>
2024-07-15 21:10:50 -06:00
Alex Richert
5c3a23a481 pixman: add shared, pic variants (#44889)
* Add shared/pic variants to pixman
* add +shared~pic conflict
2024-07-15 17:36:45 -07:00
AcriusWinter
8be1f26ac6 tix: old to new test API (#45223) 2024-07-15 17:31:02 -07:00
Adam J. Stewart
35bd21fc64 py-tensorflow-estimator: correct dependencies (#44185) 2024-07-15 22:12:16 +02:00
Adam J. Stewart
652170fb54 DCMTK: fix build with libtiff (#45213) 2024-07-15 22:02:19 +02:00
Harmen Stoppels
d4e6c29f25 unparser.py: remove print statements (#45235) 2024-07-15 21:55:11 +02:00
Stephen Nicholas Swatman
c12772e73f vecmem: add infrastructure for working with SYCL (#45058)
* vecmem: add infrastructure for working with SYCL

The vecmem package uses an unorthodox build system where, instead of
expecting a SYCL-capable compiler in the `CXX` environment variable, it
expects one in `SYCLCXX`. It also needs the correct SYCL flags to be
set. This commit adds a custom build environment for the vecmem package
which allows it to be built in this way. I've also added an extra CMake
flag to ensure that the build system doesn't download any unwanted
dependencies.

* Update var/spack/repos/builtin/packages/vecmem/package.py

Co-authored-by: Wouter Deconinck <wdconinc@gmail.com>

---------

Co-authored-by: Wouter Deconinck <wdconinc@gmail.com>
2024-07-15 14:42:19 -05:00
pauleonix
a26ac1dbcc cuda: add v12.5.1 (#44342)
- Add explicit conflict on ppc64le for 12.5 and newer.
- Update/fix intel compiler conflict to reflect that intel@2021 is compatible
  only since 11.4.1 and not since 11.1.1.
- Add intel compiler conflicts to reflect strict support matrix since
  12.2.0.
2024-07-15 20:04:47 +02:00
Teague Sterling
2afaeba292 zip: add patch for gcc@14: (#45006) 2024-07-15 19:42:41 +02:00
Martin Lang
a14e76b98d FFTW: missing function declaration in pfft patch (#45095) 2024-07-15 18:50:35 +02:00
renjithravindrankannath
9a3a759ed3 Updating rocm-opencl to 6.1.2 (#45219) 2024-07-15 09:27:53 -07:00
Michael Kuhn
72f17d6961 rocksdb: add 9.4.0 (#45230) 2024-07-15 09:26:50 -07:00
Harmen Stoppels
1b967a9d98 iconv: remove requirement (#45206)
no longer necessary after 5c53973220
2024-07-15 17:45:32 +02:00
Harmen Stoppels
bb954390ec sqlite: fix url_for_version (#45228) 2024-07-15 17:45:15 +02:00
Wouter Deconinck
bf9b6940c9 abseil-cpp: patch to avoid googletest build dependency (#45103) 2024-07-15 17:09:21 +02:00
simonLeary42
22980b9e65 rust: update cmake dependency ranges (#45145) 2024-07-15 17:03:23 +02:00
Vanessasaurus
483426f771 flux-sched: add v0.36.0 (#45161) 2024-07-15 17:01:07 +02:00
rfbgo
1e5b976eb7 py-pytorch-lightning: add v2.0.7 (#45175) 2024-07-15 16:59:03 +02:00
Patrick Diehl
2aa6939b96 hpx: add instrumentation=thread_debug (#45199)
Co-authored-by: Hartmut Kaiser <hartmut.kaiser@gmail.com>
2024-07-15 14:47:13 +02:00
Simo Tuomisto
f7e601d352 google-cloud-cli: fix unquoted value in env variable (#45207) 2024-07-15 14:41:44 +02:00
Manuela Kuhn
c4082931e3 r-colourpicker: add 1.3.0 (#45209) 2024-07-15 14:39:28 +02:00
Julien Cortial
cee3e5436b perl-json: add optional dependency on perl-json-xs (#45050) 2024-07-15 14:23:25 +02:00
Adam J. Stewart
613fa56bfc py-shapely: add v2.0.5 (#45224) 2024-07-15 11:38:10 +02:00
Michael Kuhn
0752d94bbf libelf: fix build with GCC 14 (#45226) 2024-07-15 10:18:36 +02:00
afzpatel
3bf1a03760 py-tensorflow: change py-tensorflow@2.16-rocm-enhanced to use tarball instead of branch (#45218)
* change py-tensorflow@2.16-rocm-enhanced to use tarball instead of branch

* remove revert_fd6b0a4.patch and use github commit patch url
2024-07-13 12:19:19 +02:00
4342 changed files with 30453 additions and 14823 deletions

View File

@@ -5,14 +5,10 @@ updates:
directory: "/"
schedule:
interval: "daily"
# Requirements to build documentation
- package-ecosystem: "pip"
directory: "/lib/spack/docs"
schedule:
interval: "daily"
# Requirements to run style checks
# Requirements to run style checks and build documentation
- package-ecosystem: "pip"
directories:
- "/.github/workflows/requirements/*"
- "/.github/workflows/requirements/style/*"
- "/lib/spack/docs"
schedule:
interval: "daily"

View File

@@ -29,7 +29,7 @@ jobs:
shell: ${{ matrix.system.shell }}
steps:
- uses: actions/checkout@692973e3d937129bcbf40652eb9f2f61becf3332
- uses: actions/setup-python@39cd14951b08e74b54015e9e001cdefcf80e669f
- uses: actions/setup-python@f677139bbe7f9c59b41e40162b753c062f5d49a3
with:
python-version: ${{inputs.python_version}}
- name: Install Python packages
@@ -44,6 +44,7 @@ jobs:
run: |
. share/spack/setup-env.sh
coverage run $(which spack) audit packages
coverage run $(which spack) audit configs
coverage run $(which spack) -d audit externals
coverage combine
coverage xml
@@ -52,6 +53,7 @@ jobs:
run: |
. share/spack/setup-env.sh
spack -d audit packages
spack -d audit configs
spack -d audit externals
- name: Package audits (without coverage)
if: ${{ runner.os == 'Windows' }}
@@ -59,6 +61,8 @@ jobs:
. share/spack/setup-env.sh
spack -d audit packages
./share/spack/qa/validate_last_exit.ps1
spack -d audit configs
./share/spack/qa/validate_last_exit.ps1
spack -d audit externals
./share/spack/qa/validate_last_exit.ps1
- uses: codecov/codecov-action@e28ff129e5465c2c0dcc6f003fc735cb6ae0c673

View File

@@ -63,7 +63,7 @@ jobs:
uses: actions/checkout@692973e3d937129bcbf40652eb9f2f61becf3332
with:
fetch-depth: 0
- uses: actions/setup-python@39cd14951b08e74b54015e9e001cdefcf80e669f
- uses: actions/setup-python@f677139bbe7f9c59b41e40162b753c062f5d49a3
with:
python-version: "3.12"
- name: Bootstrap clingo
@@ -112,10 +112,10 @@ jobs:
runs-on: ${{ matrix.runner }}
strategy:
matrix:
runner: ['macos-13', 'macos-14', "ubuntu-latest"]
runner: ['macos-13', 'macos-14', "ubuntu-latest", "windows-latest"]
steps:
- name: Setup macOS
if: ${{ matrix.runner != 'ubuntu-latest' }}
if: ${{ matrix.runner != 'ubuntu-latest' && matrix.runner != 'windows-latest'}}
run: |
brew install tree
# Remove GnuPG since we want to bootstrap it
@@ -124,11 +124,16 @@ jobs:
if: ${{ matrix.runner == 'ubuntu-latest' }}
run: |
sudo rm -rf $(which gpg) $(which gpg2) $(which patchelf)
- name: Setup Windows
if: ${{ matrix.runner == 'windows-latest' }}
run: |
Remove-Item -Path (Get-Command gpg).Path
Remove-Item -Path (Get-Command file).Path
- name: Checkout
uses: actions/checkout@692973e3d937129bcbf40652eb9f2f61becf3332
with:
fetch-depth: 0
- uses: actions/setup-python@39cd14951b08e74b54015e9e001cdefcf80e669f
- uses: actions/setup-python@f677139bbe7f9c59b41e40162b753c062f5d49a3
with:
python-version: |
3.8
@@ -137,11 +142,20 @@ jobs:
3.11
3.12
- name: Set bootstrap sources
env:
SETUP_SCRIPT_EXT: ${{ matrix.runner == 'windows-latest' && 'ps1' || 'sh' }}
SETUP_SCRIPT_SOURCE: ${{ matrix.runner == 'windows-latest' && './' || 'source ' }}
run: |
${{ env.SETUP_SCRIPT_SOURCE }}share/spack/setup-env.${{ env.SETUP_SCRIPT_EXT }}
spack bootstrap disable github-actions-v0.4
- name: Disable from source bootstrap
if: ${{ matrix.runner != 'windows-latest' }}
run: |
source share/spack/setup-env.sh
spack bootstrap disable github-actions-v0.4
spack bootstrap disable spack-install
- name: Bootstrap clingo
# No binary clingo on Windows yet
if: ${{ matrix.runner != 'windows-latest' }}
run: |
set -e
for ver in '3.8' '3.9' '3.10' '3.11' '3.12' ; do
@@ -164,7 +178,24 @@ jobs:
fi
done
- name: Bootstrap GnuPG
env:
SETUP_SCRIPT_EXT: ${{ matrix.runner == 'windows-latest' && 'ps1' || 'sh' }}
SETUP_SCRIPT_SOURCE: ${{ matrix.runner == 'windows-latest' && './' || 'source ' }}
USER_SCOPE_PARENT_DIR: ${{ matrix.runner == 'windows-latest' && '$env:userprofile' || '$HOME' }}
VALIDATE_LAST_EXIT: ${{ matrix.runner == 'windows-latest' && './share/spack/qa/validate_last_exit.ps1' || '' }}
run: |
source share/spack/setup-env.sh
${{ env.SETUP_SCRIPT_SOURCE }}share/spack/setup-env.${{ env.SETUP_SCRIPT_EXT }}
spack -d gpg list
tree ~/.spack/bootstrap/store/
${{ env.VALIDATE_LAST_EXIT }}
tree ${{ env.USER_SCOPE_PARENT_DIR }}/.spack/bootstrap/store/
- name: Bootstrap File
env:
SETUP_SCRIPT_EXT: ${{ matrix.runner == 'windows-latest' && 'ps1' || 'sh' }}
SETUP_SCRIPT_SOURCE: ${{ matrix.runner == 'windows-latest' && './' || 'source ' }}
USER_SCOPE_PARENT_DIR: ${{ matrix.runner == 'windows-latest' && '$env:userprofile' || '$HOME' }}
VALIDATE_LAST_EXIT: ${{ matrix.runner == 'windows-latest' && './share/spack/qa/validate_last_exit.ps1' || '' }}
run: |
${{ env.SETUP_SCRIPT_SOURCE }}share/spack/setup-env.${{ env.SETUP_SCRIPT_EXT }}
spack -d python share/spack/qa/bootstrap-file.py
${{ env.VALIDATE_LAST_EXIT }}
tree ${{ env.USER_SCOPE_PARENT_DIR }}/.spack/bootstrap/store/

View File

@@ -87,19 +87,19 @@ jobs:
fi
- name: Upload Dockerfile
uses: actions/upload-artifact@0b2256b8c012f0828dc542b3febcab082c67f72b
uses: actions/upload-artifact@50769540e7f4bd5e21e526ee35c689e35e0d6874
with:
name: dockerfiles_${{ matrix.dockerfile[0] }}
path: dockerfiles
- name: Set up QEMU
uses: docker/setup-qemu-action@5927c834f5b4fdf503fca6f4c7eccda82949e1ee
uses: docker/setup-qemu-action@49b3bc8e6bdd4a60e6116a5414239cba5943d3cf
- name: Set up Docker Buildx
uses: docker/setup-buildx-action@4fd812986e6c8c2a69e18311145f9371337f27d4
uses: docker/setup-buildx-action@988b5a0280414f521da01fcc63a27aeeb4b104db
- name: Log in to GitHub Container Registry
uses: docker/login-action@0d4c9c5ea7693da7b068278f7b52bda2a190a446
uses: docker/login-action@9780b0c442fbb1117ed29e0efdff1e18412f7567
with:
registry: ghcr.io
username: ${{ github.actor }}
@@ -107,13 +107,13 @@ jobs:
- name: Log in to DockerHub
if: github.event_name != 'pull_request'
uses: docker/login-action@0d4c9c5ea7693da7b068278f7b52bda2a190a446
uses: docker/login-action@9780b0c442fbb1117ed29e0efdff1e18412f7567
with:
username: ${{ secrets.DOCKERHUB_USERNAME }}
password: ${{ secrets.DOCKERHUB_TOKEN }}
- name: Build & Deploy ${{ matrix.dockerfile[0] }}
uses: docker/build-push-action@1a162644f9a7e87d8f4b053101d1d9a712edc18c
uses: docker/build-push-action@5cd11c3a4ced054e52742c5fd54dca954e0edd85
with:
context: dockerfiles/${{ matrix.dockerfile[0] }}
platforms: ${{ matrix.dockerfile[1] }}
@@ -126,7 +126,7 @@ jobs:
needs: deploy-images
steps:
- name: Merge Artifacts
uses: actions/upload-artifact/merge@0b2256b8c012f0828dc542b3febcab082c67f72b
uses: actions/upload-artifact/merge@50769540e7f4bd5e21e526ee35c689e35e0d6874
with:
name: dockerfiles
pattern: dockerfiles_*

View File

@@ -17,7 +17,7 @@ jobs:
- uses: actions/checkout@692973e3d937129bcbf40652eb9f2f61becf3332
with:
fetch-depth: 0
- uses: actions/setup-python@39cd14951b08e74b54015e9e001cdefcf80e669f
- uses: actions/setup-python@f677139bbe7f9c59b41e40162b753c062f5d49a3
with:
python-version: 3.9
- name: Install Python packages

View File

@@ -1,6 +1,6 @@
black==24.4.2
black==24.8.0
clingo==5.7.1
flake8==7.1.0
flake8==7.1.1
isort==5.13.2
mypy==1.8.0
types-six==1.16.21.20240513

View File

@@ -16,45 +16,34 @@ jobs:
matrix:
os: [ubuntu-latest]
python-version: ['3.7', '3.8', '3.9', '3.10', '3.11', '3.12']
concretizer: ['clingo']
on_develop:
- ${{ github.ref == 'refs/heads/develop' }}
include:
- python-version: '3.11'
os: ubuntu-latest
concretizer: original
on_develop: ${{ github.ref == 'refs/heads/develop' }}
- python-version: '3.6'
os: ubuntu-20.04
concretizer: clingo
on_develop: ${{ github.ref == 'refs/heads/develop' }}
exclude:
- python-version: '3.7'
os: ubuntu-latest
concretizer: 'clingo'
on_develop: false
- python-version: '3.8'
os: ubuntu-latest
concretizer: 'clingo'
on_develop: false
- python-version: '3.9'
os: ubuntu-latest
concretizer: 'clingo'
on_develop: false
- python-version: '3.10'
os: ubuntu-latest
concretizer: 'clingo'
on_develop: false
- python-version: '3.11'
os: ubuntu-latest
concretizer: 'clingo'
on_develop: false
steps:
- uses: actions/checkout@692973e3d937129bcbf40652eb9f2f61becf3332
with:
fetch-depth: 0
- uses: actions/setup-python@39cd14951b08e74b54015e9e001cdefcf80e669f
- uses: actions/setup-python@f677139bbe7f9c59b41e40162b753c062f5d49a3
with:
python-version: ${{ matrix.python-version }}
- name: Install System packages
@@ -85,7 +74,6 @@ jobs:
- name: Run unit tests
env:
SPACK_PYTHON: python
SPACK_TEST_SOLVER: ${{ matrix.concretizer }}
SPACK_TEST_PARALLEL: 2
COVERAGE: true
UNIT_TEST_COVERAGE: ${{ matrix.python-version == '3.11' }}
@@ -103,7 +91,7 @@ jobs:
- uses: actions/checkout@692973e3d937129bcbf40652eb9f2f61becf3332
with:
fetch-depth: 0
- uses: actions/setup-python@39cd14951b08e74b54015e9e001cdefcf80e669f
- uses: actions/setup-python@f677139bbe7f9c59b41e40162b753c062f5d49a3
with:
python-version: '3.11'
- name: Install System packages
@@ -163,7 +151,7 @@ jobs:
- uses: actions/checkout@692973e3d937129bcbf40652eb9f2f61becf3332
with:
fetch-depth: 0
- uses: actions/setup-python@39cd14951b08e74b54015e9e001cdefcf80e669f
- uses: actions/setup-python@f677139bbe7f9c59b41e40162b753c062f5d49a3
with:
python-version: '3.11'
- name: Install System packages
@@ -182,7 +170,6 @@ jobs:
- name: Run unit tests (full suite with coverage)
env:
COVERAGE: true
SPACK_TEST_SOLVER: clingo
run: |
share/spack/qa/run-unit-tests
- uses: codecov/codecov-action@e28ff129e5465c2c0dcc6f003fc735cb6ae0c673
@@ -201,7 +188,7 @@ jobs:
- uses: actions/checkout@692973e3d937129bcbf40652eb9f2f61becf3332
with:
fetch-depth: 0
- uses: actions/setup-python@39cd14951b08e74b54015e9e001cdefcf80e669f
- uses: actions/setup-python@f677139bbe7f9c59b41e40162b753c062f5d49a3
with:
python-version: ${{ matrix.python-version }}
- name: Install Python packages
@@ -213,7 +200,6 @@ jobs:
brew install dash fish gcc gnupg2 kcov
- name: Run unit tests
env:
SPACK_TEST_SOLVER: clingo
SPACK_TEST_PARALLEL: 4
run: |
git --version
@@ -239,7 +225,7 @@ jobs:
- uses: actions/checkout@692973e3d937129bcbf40652eb9f2f61becf3332
with:
fetch-depth: 0
- uses: actions/setup-python@39cd14951b08e74b54015e9e001cdefcf80e669f
- uses: actions/setup-python@f677139bbe7f9c59b41e40162b753c062f5d49a3
with:
python-version: 3.9
- name: Install Python packages

View File

@@ -19,7 +19,7 @@ jobs:
runs-on: ubuntu-latest
steps:
- uses: actions/checkout@692973e3d937129bcbf40652eb9f2f61becf3332
- uses: actions/setup-python@39cd14951b08e74b54015e9e001cdefcf80e669f
- uses: actions/setup-python@f677139bbe7f9c59b41e40162b753c062f5d49a3
with:
python-version: '3.11'
cache: 'pip'
@@ -38,7 +38,7 @@ jobs:
- uses: actions/checkout@692973e3d937129bcbf40652eb9f2f61becf3332
with:
fetch-depth: 0
- uses: actions/setup-python@39cd14951b08e74b54015e9e001cdefcf80e669f
- uses: actions/setup-python@f677139bbe7f9c59b41e40162b753c062f5d49a3
with:
python-version: '3.11'
cache: 'pip'

View File

@@ -170,23 +170,6 @@ config:
# If set to true, Spack will use ccache to cache C compiles.
ccache: false
# The concretization algorithm to use in Spack. Options are:
#
# 'clingo': Uses a logic solver under the hood to solve DAGs with full
# backtracking and optimization for user preferences. Spack will
# try to bootstrap the logic solver, if not already available.
#
# 'original': Spack's original greedy, fixed-point concretizer. This
# algorithm can make decisions too early and will not backtrack
# sufficiently for many specs. This will soon be deprecated in
# favor of clingo.
#
# See `concretizer.yaml` for more settings you can fine-tune when
# using clingo.
concretizer: clingo
# How long to wait to lock the Spack installation database. This lock is used
# when Spack needs to manage its own package metadata and all operations are
# expected to complete within the default time limit. The timeout should

View File

@@ -1,3 +0,0 @@
packages:
iconv:
require: [libiconv]

View File

@@ -20,11 +20,14 @@ packages:
awk: [gawk]
armci: [armcimpi]
blas: [openblas, amdblis]
c: [gcc]
cxx: [gcc]
D: [ldc]
daal: [intel-oneapi-daal]
elf: [elfutils]
fftw-api: [fftw, amdfftw]
flame: [libflame, amdlibflame]
fortran: [gcc]
fortran-rt: [gcc-runtime, intel-oneapi-runtime]
fuse: [libfuse]
gl: [glx, osmesa]
@@ -61,6 +64,7 @@ packages:
tbb: [intel-tbb]
unwind: [libunwind]
uuid: [util-linux-uuid, libuuid]
wasi-sdk: [wasi-sdk-prebuilt]
xxd: [xxd-standalone, vim]
yacc: [bison, byacc]
ziglang: [zig]
@@ -68,3 +72,13 @@ packages:
permissions:
read: world
write: user
cray-mpich:
buildable: false
cray-mvapich2:
buildable: false
fujitsu-mpi:
buildable: false
hpcx-mpi:
buildable: false
spectrum-mpi:
buildable: false

View File

@@ -1,6 +1,5 @@
config:
locks: false
concretizer: clingo
build_stage::
- '$spack/.staging'
stage_name: '{name}-{version}-{hash:7}'

View File

@@ -206,6 +206,7 @@ def setup(sphinx):
("py:class", "six.moves.urllib.parse.ParseResult"),
("py:class", "TextIO"),
("py:class", "hashlib._Hash"),
("py:class", "concurrent.futures._base.Executor"),
# Spack classes that are private and we don't want to expose
("py:class", "spack.provider_index._IndexBase"),
("py:class", "spack.repo._PrependFileLoader"),

View File

@@ -863,7 +863,7 @@ named list ``compilers`` is ``['%gcc', '%clang', '%intel']`` on
spack:
definitions:
- compilers: ['%gcc', '%clang']
- when: arch.satisfies('x86_64:')
- when: arch.satisfies('target=x86_64:')
compilers: ['%intel']
.. note::
@@ -893,8 +893,9 @@ The valid variables for a ``when`` clause are:
#. ``env``. The user environment (usually ``os.environ`` in Python).
#. ``hostname``. The hostname of the system (if ``hostname`` is an
executable in the user's PATH).
#. ``hostname``. The hostname of the system.
#. ``full_hostname``. The fully qualified hostname of the system.
^^^^^^^^^^^^^^^^^^^^^^^^
SpecLists as Constraints

View File

@@ -1263,6 +1263,11 @@ Git fetching supports the following parameters to ``version``:
option ``--depth 1`` will be used if the version of git and the specified
transport protocol support it, and ``--single-branch`` will be used if the
version of git supports it.
* ``git_sparse_paths``: Use ``sparse-checkout`` to only clone these relative paths.
This feature requires ``git`` to be version ``2.25.0`` or later but is useful for
large repositories that have separate portions that can be built independently.
If paths provided are directories then all the subdirectories and associated files
will also be cloned.
Only one of ``tag``, ``branch``, or ``commit`` can be used at a time.
@@ -1361,6 +1366,41 @@ Submodules
For more information about git submodules see the manpage of git: ``man
git-submodule``.
Sparse-Checkout
You can supply ``git_sparse_paths`` at the package or version level to utilize git's
sparse-checkout feature. This will only clone the paths that are specified in the
``git_sparse_paths`` attribute for the package along with the files in the top level directory.
This feature allows you to only clone what you need from a large repository.
Note that this is a newer feature in git and requries git ``2.25.0`` or greater.
If ``git_sparse_paths`` is supplied and the git version is too old
then a warning will be issued and that package will use the standard cloning operations instead.
``git_sparse_paths`` should be supplied as a list of paths, a callable function for versions,
or a more complex package attribute using the ``@property`` decorator. The return value should be
a list for a callable implementation of ``git_sparse_paths``.
.. code-block:: python
def sparse_path_function(package)
"""a callable function that can be used in side a version"""
# paths can be directories or functions, all subdirectories and files are included
paths = ["doe", "rae", "me/file.cpp"]
if package.spec.version > Version("1.2.0"):
paths.extend(["fae"])
return paths
class MyPackage(package):
# can also be a package attribute that will be used if not specified in versions
git_sparse_paths = ["doe", "rae"]
# use the package attribute
version("1.0.0")
version("1.1.0")
# use the function
version("1.1.5", git_sparse_paths=sparse_path_func)
version("1.2.0", git_sparse_paths=sparse_path_func)
version("1.2.5", git_sparse_paths=sparse_path_func)
version("1.1.5", git_sparse_paths=sparse_path_func)
.. _github-fetch:
^^^^^^

View File

@@ -1,13 +1,13 @@
sphinx==7.2.6
sphinx==7.4.7
sphinxcontrib-programoutput==0.17
sphinx_design==0.6.0
sphinx_design==0.6.1
sphinx-rtd-theme==2.0.0
python-levenshtein==0.25.1
docutils==0.20.1
pygments==2.18.0
urllib3==2.2.2
pytest==8.2.2
pytest==8.3.2
isort==5.13.2
black==24.4.2
flake8==7.1.0
mypy==1.10.1
black==24.8.0
flake8==7.1.1
mypy==1.11.1

96
lib/spack/env/cc vendored
View File

@@ -174,6 +174,46 @@ preextend() {
unset IFS
}
execute() {
# dump the full command if the caller supplies SPACK_TEST_COMMAND=dump-args
if [ -n "${SPACK_TEST_COMMAND=}" ]; then
case "$SPACK_TEST_COMMAND" in
dump-args)
IFS="$lsep"
for arg in $full_command_list; do
echo "$arg"
done
unset IFS
exit
;;
dump-env-*)
var=${SPACK_TEST_COMMAND#dump-env-}
eval "printf '%s\n' \"\$0: \$var: \$$var\""
;;
*)
die "Unknown test command: '$SPACK_TEST_COMMAND'"
;;
esac
fi
#
# Write the input and output commands to debug logs if it's asked for.
#
if [ "$SPACK_DEBUG" = TRUE ]; then
input_log="$SPACK_DEBUG_LOG_DIR/spack-cc-$SPACK_DEBUG_LOG_ID.in.log"
output_log="$SPACK_DEBUG_LOG_DIR/spack-cc-$SPACK_DEBUG_LOG_ID.out.log"
echo "[$mode] $command $input_command" >> "$input_log"
IFS="$lsep"
echo "[$mode] "$full_command_list >> "$output_log"
unset IFS
fi
# Execute the full command, preserving spaces with IFS set
# to the alarm bell separator.
IFS="$lsep"; exec $full_command_list
exit
}
# Fail with a clear message if the input contains any bell characters.
if eval "[ \"\${*#*${lsep}}\" != \"\$*\" ]"; then
die "Compiler command line contains our separator ('${lsep}'). Cannot parse."
@@ -231,12 +271,17 @@ fi
# ld link
# ccld compile & link
# Note. SPACK_ALWAYS_XFLAGS are applied for all compiler invocations,
# including version checks (SPACK_XFLAGS variants are not applied
# for version checks).
command="${0##*/}"
comp="CC"
vcheck_flags=""
case "$command" in
cpp)
mode=cpp
debug_flags="-g"
vcheck_flags="${SPACK_ALWAYS_CPPFLAGS}"
;;
cc|c89|c99|gcc|clang|armclang|icc|icx|pgcc|nvc|xlc|xlc_r|fcc|amdclang|cl.exe|craycc)
command="$SPACK_CC"
@@ -244,6 +289,7 @@ case "$command" in
comp="CC"
lang_flags=C
debug_flags="-g"
vcheck_flags="${SPACK_ALWAYS_CFLAGS}"
;;
c++|CC|g++|clang++|armclang++|icpc|icpx|pgc++|nvc++|xlc++|xlc++_r|FCC|amdclang++|crayCC)
command="$SPACK_CXX"
@@ -251,6 +297,7 @@ case "$command" in
comp="CXX"
lang_flags=CXX
debug_flags="-g"
vcheck_flags="${SPACK_ALWAYS_CXXFLAGS}"
;;
ftn|f90|fc|f95|gfortran|flang|armflang|ifort|ifx|pgfortran|nvfortran|xlf90|xlf90_r|nagfor|frt|amdflang|crayftn)
command="$SPACK_FC"
@@ -258,6 +305,7 @@ case "$command" in
comp="FC"
lang_flags=F
debug_flags="-g"
vcheck_flags="${SPACK_ALWAYS_FFLAGS}"
;;
f77|xlf|xlf_r|pgf77)
command="$SPACK_F77"
@@ -265,6 +313,7 @@ case "$command" in
comp="F77"
lang_flags=F
debug_flags="-g"
vcheck_flags="${SPACK_ALWAYS_FFLAGS}"
;;
ld|ld.gold|ld.lld)
mode=ld
@@ -365,7 +414,11 @@ unset IFS
export PATH="$new_dirs"
if [ "$mode" = vcheck ]; then
exec "${command}" "$@"
full_command_list="$command"
args="$@"
extend full_command_list vcheck_flags
extend full_command_list args
execute
fi
# Darwin's linker has a -r argument that merges object files together.
@@ -722,6 +775,7 @@ case "$mode" in
cc|ccld)
case $lang_flags in
F)
extend spack_flags_list SPACK_ALWAYS_FFLAGS
extend spack_flags_list SPACK_FFLAGS
;;
esac
@@ -731,6 +785,7 @@ esac
# C preprocessor flags come before any C/CXX flags
case "$mode" in
cpp|as|cc|ccld)
extend spack_flags_list SPACK_ALWAYS_CPPFLAGS
extend spack_flags_list SPACK_CPPFLAGS
;;
esac
@@ -741,9 +796,11 @@ case "$mode" in
cc|ccld)
case $lang_flags in
C)
extend spack_flags_list SPACK_ALWAYS_CFLAGS
extend spack_flags_list SPACK_CFLAGS
;;
CXX)
extend spack_flags_list SPACK_ALWAYS_CXXFLAGS
extend spack_flags_list SPACK_CXXFLAGS
;;
esac
@@ -933,39 +990,4 @@ if [ -n "$SPACK_CCACHE_BINARY" ]; then
esac
fi
# dump the full command if the caller supplies SPACK_TEST_COMMAND=dump-args
if [ -n "${SPACK_TEST_COMMAND=}" ]; then
case "$SPACK_TEST_COMMAND" in
dump-args)
IFS="$lsep"
for arg in $full_command_list; do
echo "$arg"
done
unset IFS
exit
;;
dump-env-*)
var=${SPACK_TEST_COMMAND#dump-env-}
eval "printf '%s\n' \"\$0: \$var: \$$var\""
;;
*)
die "Unknown test command: '$SPACK_TEST_COMMAND'"
;;
esac
fi
#
# Write the input and output commands to debug logs if it's asked for.
#
if [ "$SPACK_DEBUG" = TRUE ]; then
input_log="$SPACK_DEBUG_LOG_DIR/spack-cc-$SPACK_DEBUG_LOG_ID.in.log"
output_log="$SPACK_DEBUG_LOG_DIR/spack-cc-$SPACK_DEBUG_LOG_ID.out.log"
echo "[$mode] $command $input_command" >> "$input_log"
IFS="$lsep"
echo "[$mode] "$full_command_list >> "$output_log"
unset IFS
fi
# Execute the full command, preserving spaces with IFS set
# to the alarm bell separator.
IFS="$lsep"; exec $full_command_list
execute

View File

@@ -18,7 +18,7 @@
* Homepage: https://pypi.python.org/pypi/archspec
* Usage: Labeling, comparison and detection of microarchitectures
* Version: 0.2.4 (commit 48b92512b9ce203ded0ebd1ac41b42593e931f7c)
* Version: 0.2.5-dev (commit 7e6740012b897ae4a950f0bba7e9726b767e921f)
astunparse
----------------

View File

@@ -1265,27 +1265,29 @@ def _distro_release_info(self) -> Dict[str, str]:
match = _DISTRO_RELEASE_BASENAME_PATTERN.match(basename)
else:
try:
basenames = [
basename
for basename in os.listdir(self.etc_dir)
if basename not in _DISTRO_RELEASE_IGNORE_BASENAMES
and os.path.isfile(os.path.join(self.etc_dir, basename))
]
with os.scandir(self.etc_dir) as it:
etc_files = [
p.path for p in it
if p.is_file() and p.name not in _DISTRO_RELEASE_IGNORE_BASENAMES
]
# We sort for repeatability in cases where there are multiple
# distro specific files; e.g. CentOS, Oracle, Enterprise all
# containing `redhat-release` on top of their own.
basenames.sort()
etc_files.sort()
except OSError:
# This may occur when /etc is not readable but we can't be
# sure about the *-release files. Check common entries of
# /etc for information. If they turn out to not be there the
# error is handled in `_parse_distro_release_file()`.
basenames = _DISTRO_RELEASE_BASENAMES
for basename in basenames:
match = _DISTRO_RELEASE_BASENAME_PATTERN.match(basename)
etc_files = [
os.path.join(self.etc_dir, basename)
for basename in _DISTRO_RELEASE_BASENAMES
]
for filepath in etc_files:
match = _DISTRO_RELEASE_BASENAME_PATTERN.match(os.path.basename(filepath))
if match is None:
continue
filepath = os.path.join(self.etc_dir, basename)
distro_info = self._parse_distro_release_file(filepath)
# The name is always present if the pattern matches.
if "name" not in distro_info:

View File

@@ -231,96 +231,6 @@ def is_host_name(instance):
return True
try:
# The built-in `idna` codec only implements RFC 3890, so we go elsewhere.
import idna
except ImportError:
pass
else:
@_checks_drafts(draft7="idn-hostname", raises=idna.IDNAError)
def is_idn_host_name(instance):
if not isinstance(instance, str_types):
return True
idna.encode(instance)
return True
try:
import rfc3987
except ImportError:
try:
from rfc3986_validator import validate_rfc3986
except ImportError:
pass
else:
@_checks_drafts(name="uri")
def is_uri(instance):
if not isinstance(instance, str_types):
return True
return validate_rfc3986(instance, rule="URI")
@_checks_drafts(
draft6="uri-reference",
draft7="uri-reference",
raises=ValueError,
)
def is_uri_reference(instance):
if not isinstance(instance, str_types):
return True
return validate_rfc3986(instance, rule="URI_reference")
else:
@_checks_drafts(draft7="iri", raises=ValueError)
def is_iri(instance):
if not isinstance(instance, str_types):
return True
return rfc3987.parse(instance, rule="IRI")
@_checks_drafts(draft7="iri-reference", raises=ValueError)
def is_iri_reference(instance):
if not isinstance(instance, str_types):
return True
return rfc3987.parse(instance, rule="IRI_reference")
@_checks_drafts(name="uri", raises=ValueError)
def is_uri(instance):
if not isinstance(instance, str_types):
return True
return rfc3987.parse(instance, rule="URI")
@_checks_drafts(
draft6="uri-reference",
draft7="uri-reference",
raises=ValueError,
)
def is_uri_reference(instance):
if not isinstance(instance, str_types):
return True
return rfc3987.parse(instance, rule="URI_reference")
try:
from strict_rfc3339 import validate_rfc3339
except ImportError:
try:
from rfc3339_validator import validate_rfc3339
except ImportError:
validate_rfc3339 = None
if validate_rfc3339:
@_checks_drafts(name="date-time")
def is_datetime(instance):
if not isinstance(instance, str_types):
return True
return validate_rfc3339(instance)
@_checks_drafts(draft7="time")
def is_time(instance):
if not isinstance(instance, str_types):
return True
return is_datetime("1970-01-01T" + instance)
@_checks_drafts(name="regex", raises=re.error)
def is_regex(instance):
if not isinstance(instance, str_types):
@@ -340,86 +250,3 @@ def is_draft3_time(instance):
if not isinstance(instance, str_types):
return True
return datetime.datetime.strptime(instance, "%H:%M:%S")
try:
import webcolors
except ImportError:
pass
else:
def is_css_color_code(instance):
return webcolors.normalize_hex(instance)
@_checks_drafts(draft3="color", raises=(ValueError, TypeError))
def is_css21_color(instance):
if (
not isinstance(instance, str_types) or
instance.lower() in webcolors.css21_names_to_hex
):
return True
return is_css_color_code(instance)
def is_css3_color(instance):
if instance.lower() in webcolors.css3_names_to_hex:
return True
return is_css_color_code(instance)
try:
import jsonpointer
except ImportError:
pass
else:
@_checks_drafts(
draft6="json-pointer",
draft7="json-pointer",
raises=jsonpointer.JsonPointerException,
)
def is_json_pointer(instance):
if not isinstance(instance, str_types):
return True
return jsonpointer.JsonPointer(instance)
# TODO: I don't want to maintain this, so it
# needs to go either into jsonpointer (pending
# https://github.com/stefankoegl/python-json-pointer/issues/34) or
# into a new external library.
@_checks_drafts(
draft7="relative-json-pointer",
raises=jsonpointer.JsonPointerException,
)
def is_relative_json_pointer(instance):
# Definition taken from:
# https://tools.ietf.org/html/draft-handrews-relative-json-pointer-01#section-3
if not isinstance(instance, str_types):
return True
non_negative_integer, rest = [], ""
for i, character in enumerate(instance):
if character.isdigit():
non_negative_integer.append(character)
continue
if not non_negative_integer:
return False
rest = instance[i:]
break
return (rest == "#") or jsonpointer.JsonPointer(rest)
try:
import uritemplate.exceptions
except ImportError:
pass
else:
@_checks_drafts(
draft6="uri-template",
draft7="uri-template",
raises=uritemplate.exceptions.InvalidTemplate,
)
def is_uri_template(
instance,
template_validator=uritemplate.Validator().force_balanced_braces(),
):
template = uritemplate.URITemplate(instance)
return template_validator.validate(template)

View File

@@ -47,7 +47,11 @@ def decorator(factory):
def partial_uarch(
name: str = "", vendor: str = "", features: Optional[Set[str]] = None, generation: int = 0
name: str = "",
vendor: str = "",
features: Optional[Set[str]] = None,
generation: int = 0,
cpu_part: str = "",
) -> Microarchitecture:
"""Construct a partial microarchitecture, from information gathered during system scan."""
return Microarchitecture(
@@ -57,6 +61,7 @@ def partial_uarch(
features=features or set(),
compilers={},
generation=generation,
cpu_part=cpu_part,
)
@@ -90,6 +95,7 @@ def proc_cpuinfo() -> Microarchitecture:
return partial_uarch(
vendor=_canonicalize_aarch64_vendor(data),
features=_feature_set(data, key="Features"),
cpu_part=data.get("CPU part", ""),
)
if architecture in (PPC64LE, PPC64):
@@ -345,6 +351,10 @@ def sorting_fn(item):
generic_candidates = [c for c in candidates if c.vendor == "generic"]
best_generic = max(generic_candidates, key=sorting_fn)
# Relevant for AArch64. Filter on "cpu_part" if we have any match
if info.cpu_part != "" and any(c for c in candidates if info.cpu_part == c.cpu_part):
candidates = [c for c in candidates if info.cpu_part == c.cpu_part]
# Filter the candidates to be descendant of the best generic candidate.
# This is to avoid that the lack of a niche feature that can be disabled
# from e.g. BIOS prevents detection of a reasonably performant architecture

View File

@@ -2,9 +2,7 @@
# Archspec Project Developers. See the top-level COPYRIGHT file for details.
#
# SPDX-License-Identifier: (Apache-2.0 OR MIT)
"""Types and functions to manage information
on CPU microarchitectures.
"""
"""Types and functions to manage information on CPU microarchitectures."""
import functools
import platform
import re
@@ -65,21 +63,24 @@ class Microarchitecture:
passed in as argument above.
* versions: versions that support this micro-architecture.
generation (int): generation of the micro-architecture, if
relevant.
generation (int): generation of the micro-architecture, if relevant.
cpu_part (str): cpu part of the architecture, if relevant.
"""
# pylint: disable=too-many-arguments
# pylint: disable=too-many-arguments,too-many-instance-attributes
#: Aliases for micro-architecture's features
feature_aliases = FEATURE_ALIASES
def __init__(self, name, parents, vendor, features, compilers, generation=0):
def __init__(self, name, parents, vendor, features, compilers, generation=0, cpu_part=""):
self.name = name
self.parents = parents
self.vendor = vendor
self.features = features
self.compilers = compilers
# Only relevant for PowerPC
self.generation = generation
# Only relevant for AArch64
self.cpu_part = cpu_part
# Cache the ancestor computation
self._ancestors = None
@@ -111,6 +112,7 @@ def __eq__(self, other):
and self.parents == other.parents # avoid ancestors here
and self.compilers == other.compilers
and self.generation == other.generation
and self.cpu_part == other.cpu_part
)
@coerce_target_names
@@ -143,7 +145,8 @@ def __repr__(self):
cls_name = self.__class__.__name__
fmt = (
cls_name + "({0.name!r}, {0.parents!r}, {0.vendor!r}, "
"{0.features!r}, {0.compilers!r}, {0.generation!r})"
"{0.features!r}, {0.compilers!r}, generation={0.generation!r}, "
"cpu_part={0.cpu_part!r})"
)
return fmt.format(self)
@@ -190,6 +193,7 @@ def to_dict(self):
"generation": self.generation,
"parents": [str(x) for x in self.parents],
"compilers": self.compilers,
"cpupart": self.cpu_part,
}
@staticmethod
@@ -202,6 +206,7 @@ def from_dict(data) -> "Microarchitecture":
features=set(data["features"]),
compilers=data.get("compilers", {}),
generation=data.get("generation", 0),
cpu_part=data.get("cpupart", ""),
)
def optimization_flags(self, compiler, version):
@@ -360,8 +365,11 @@ def fill_target_from_dict(name, data, targets):
features = set(values["features"])
compilers = values.get("compilers", {})
generation = values.get("generation", 0)
cpu_part = values.get("cpupart", "")
targets[name] = Microarchitecture(name, parents, vendor, features, compilers, generation)
targets[name] = Microarchitecture(
name, parents, vendor, features, compilers, generation=generation, cpu_part=cpu_part
)
known_targets = {}
data = archspec.cpu.schema.TARGETS_JSON["microarchitectures"]

View File

@@ -2225,10 +2225,14 @@
],
"nvhpc": [
{
"versions": "21.11:",
"versions": "21.11:23.8",
"name": "zen3",
"flags": "-tp {name}",
"warnings": "zen4 is not fully supported by nvhpc yet, falling back to zen3"
"warnings": "zen4 is not fully supported by nvhpc versions < 23.9, falling back to zen3"
},
{
"versions": "23.9:",
"flags": "-tp {name}"
}
]
}
@@ -2711,7 +2715,8 @@
"flags": "-mcpu=thunderx2t99"
}
]
}
},
"cpupart": "0x0af"
},
"a64fx": {
"from": ["armv8.2a"],
@@ -2779,7 +2784,8 @@
"flags": "-march=armv8.2-a+crc+crypto+fp16+sve"
}
]
}
},
"cpupart": "0x001"
},
"cortex_a72": {
"from": ["aarch64"],
@@ -2816,7 +2822,8 @@
"flags" : "-mcpu=cortex-a72"
}
]
}
},
"cpupart": "0xd08"
},
"neoverse_n1": {
"from": ["cortex_a72", "armv8.2a"],
@@ -2902,7 +2909,8 @@
"flags": "-tp {name}"
}
]
}
},
"cpupart": "0xd0c"
},
"neoverse_v1": {
"from": ["neoverse_n1", "armv8.4a"],
@@ -2926,8 +2934,6 @@
"lrcpc",
"dcpop",
"sha3",
"sm3",
"sm4",
"asimddp",
"sha512",
"sve",
@@ -3028,7 +3034,8 @@
"flags": "-tp {name}"
}
]
}
},
"cpupart": "0xd40"
},
"neoverse_v2": {
"from": ["neoverse_n1", "armv9.0a"],
@@ -3052,13 +3059,10 @@
"lrcpc",
"dcpop",
"sha3",
"sm3",
"sm4",
"asimddp",
"sha512",
"sve",
"asimdfhm",
"dit",
"uscat",
"ilrcpc",
"flagm",
@@ -3066,18 +3070,12 @@
"sb",
"dcpodp",
"sve2",
"sveaes",
"svepmull",
"svebitperm",
"svesha3",
"svesm4",
"flagm2",
"frint",
"svei8mm",
"svebf16",
"i8mm",
"bf16",
"dgh"
"bf16"
],
"compilers" : {
"gcc": [
@@ -3102,15 +3100,19 @@
"flags" : "-march=armv8.5-a+sve -mtune=cortex-a76"
},
{
"versions": "10.0:11.99",
"versions": "10.0:11.3.99",
"flags" : "-march=armv8.5-a+sve+sve2+i8mm+bf16 -mtune=cortex-a77"
},
{
"versions": "11.4:11.99",
"flags" : "-mcpu=neoverse-v2"
},
{
"versions": "12.0:12.99",
"versions": "12.0:12.2.99",
"flags" : "-march=armv9-a+i8mm+bf16 -mtune=cortex-a710"
},
{
"versions": "13.0:",
"versions": "12.3:",
"flags" : "-mcpu=neoverse-v2"
}
],
@@ -3145,7 +3147,113 @@
"flags": "-tp {name}"
}
]
}
},
"cpupart": "0xd4f"
},
"neoverse_n2": {
"from": ["neoverse_n1", "armv9.0a"],
"vendor": "ARM",
"features": [
"fp",
"asimd",
"evtstrm",
"aes",
"pmull",
"sha1",
"sha2",
"crc32",
"atomics",
"fphp",
"asimdhp",
"cpuid",
"asimdrdm",
"jscvt",
"fcma",
"lrcpc",
"dcpop",
"sha3",
"asimddp",
"sha512",
"sve",
"asimdfhm",
"uscat",
"ilrcpc",
"flagm",
"ssbs",
"sb",
"dcpodp",
"sve2",
"flagm2",
"frint",
"svei8mm",
"svebf16",
"i8mm",
"bf16"
],
"compilers" : {
"gcc": [
{
"versions": "4.8:5.99",
"flags": "-march=armv8-a"
},
{
"versions": "6:6.99",
"flags" : "-march=armv8.1-a"
},
{
"versions": "7.0:7.99",
"flags" : "-march=armv8.2-a -mtune=cortex-a72"
},
{
"versions": "8.0:8.99",
"flags" : "-march=armv8.4-a+sve -mtune=cortex-a72"
},
{
"versions": "9.0:9.99",
"flags" : "-march=armv8.5-a+sve -mtune=cortex-a76"
},
{
"versions": "10.0:10.99",
"flags" : "-march=armv8.5-a+sve+sve2+i8mm+bf16 -mtune=cortex-a77"
},
{
"versions": "11.0:",
"flags" : "-mcpu=neoverse-n2"
}
],
"clang" : [
{
"versions": "9.0:10.99",
"flags" : "-march=armv8.5-a+sve"
},
{
"versions": "11.0:13.99",
"flags" : "-march=armv8.5-a+sve+sve2+i8mm+bf16"
},
{
"versions": "14.0:15.99",
"flags" : "-march=armv9-a+i8mm+bf16"
},
{
"versions": "16.0:",
"flags" : "-mcpu=neoverse-n2"
}
],
"arm" : [
{
"versions": "23.04.0:",
"flags" : "-mcpu=neoverse-n2"
}
],
"nvhpc" : [
{
"versions": "23.3:",
"name": "neoverse-n1",
"flags": "-tp {name}"
}
]
},
"cpupart": "0xd49"
},
"m1": {
"from": ["armv8.4a"],
@@ -3211,7 +3319,8 @@
"flags" : "-mcpu=apple-m1"
}
]
}
},
"cpupart": "0x022"
},
"m2": {
"from": ["m1", "armv8.5a"],
@@ -3289,7 +3398,8 @@
"flags" : "-mcpu=apple-m2"
}
]
}
},
"cpupart": "0x032"
},
"arm": {
"from": [],

View File

@@ -52,6 +52,9 @@
}
}
}
},
"cpupart": {
"type": "string"
}
},
"required": [
@@ -107,4 +110,4 @@
"additionalProperties": false
}
}
}
}

45
lib/spack/external/patches/distro.patch vendored Normal file
View File

@@ -0,0 +1,45 @@
diff --git a/lib/spack/external/_vendoring/distro/distro.py b/lib/spack/external/_vendoring/distro/distro.py
index 89e1868047..50c3b18d4d 100644
--- a/lib/spack/external/_vendoring/distro/distro.py
+++ b/lib/spack/external/_vendoring/distro/distro.py
@@ -1265,27 +1265,29 @@ def _distro_release_info(self) -> Dict[str, str]:
match = _DISTRO_RELEASE_BASENAME_PATTERN.match(basename)
else:
try:
- basenames = [
- basename
- for basename in os.listdir(self.etc_dir)
- if basename not in _DISTRO_RELEASE_IGNORE_BASENAMES
- and os.path.isfile(os.path.join(self.etc_dir, basename))
- ]
+ with os.scandir(self.etc_dir) as it:
+ etc_files = [
+ p.path for p in it
+ if p.is_file() and p.name not in _DISTRO_RELEASE_IGNORE_BASENAMES
+ ]
# We sort for repeatability in cases where there are multiple
# distro specific files; e.g. CentOS, Oracle, Enterprise all
# containing `redhat-release` on top of their own.
- basenames.sort()
+ etc_files.sort()
except OSError:
# This may occur when /etc is not readable but we can't be
# sure about the *-release files. Check common entries of
# /etc for information. If they turn out to not be there the
# error is handled in `_parse_distro_release_file()`.
- basenames = _DISTRO_RELEASE_BASENAMES
- for basename in basenames:
- match = _DISTRO_RELEASE_BASENAME_PATTERN.match(basename)
+ etc_files = [
+ os.path.join(self.etc_dir, basename)
+ for basename in _DISTRO_RELEASE_BASENAMES
+ ]
+
+ for filepath in etc_files:
+ match = _DISTRO_RELEASE_BASENAME_PATTERN.match(os.path.basename(filepath))
if match is None:
continue
- filepath = os.path.join(self.etc_dir, basename)
distro_info = self._parse_distro_release_file(filepath)
# The name is always present if the pattern matches.
if "name" not in distro_info:

View File

@@ -13,3 +13,191 @@ index 6b630cdfbb..1791fe7fbf 100644
-__version__ = metadata.version("jsonschema")
+
+__version__ = "3.2.0"
diff --git a/lib/spack/external/_vendoring/jsonschema/_format.py b/lib/spack/external/_vendoring/jsonschema/_format.py
index 281a7cfcff..29061e3661 100644
--- a/lib/spack/external/_vendoring/jsonschema/_format.py
+++ b/lib/spack/external/_vendoring/jsonschema/_format.py
@@ -231,96 +231,6 @@ def is_host_name(instance):
return True
-try:
- # The built-in `idna` codec only implements RFC 3890, so we go elsewhere.
- import idna
-except ImportError:
- pass
-else:
- @_checks_drafts(draft7="idn-hostname", raises=idna.IDNAError)
- def is_idn_host_name(instance):
- if not isinstance(instance, str_types):
- return True
- idna.encode(instance)
- return True
-
-
-try:
- import rfc3987
-except ImportError:
- try:
- from rfc3986_validator import validate_rfc3986
- except ImportError:
- pass
- else:
- @_checks_drafts(name="uri")
- def is_uri(instance):
- if not isinstance(instance, str_types):
- return True
- return validate_rfc3986(instance, rule="URI")
-
- @_checks_drafts(
- draft6="uri-reference",
- draft7="uri-reference",
- raises=ValueError,
- )
- def is_uri_reference(instance):
- if not isinstance(instance, str_types):
- return True
- return validate_rfc3986(instance, rule="URI_reference")
-
-else:
- @_checks_drafts(draft7="iri", raises=ValueError)
- def is_iri(instance):
- if not isinstance(instance, str_types):
- return True
- return rfc3987.parse(instance, rule="IRI")
-
- @_checks_drafts(draft7="iri-reference", raises=ValueError)
- def is_iri_reference(instance):
- if not isinstance(instance, str_types):
- return True
- return rfc3987.parse(instance, rule="IRI_reference")
-
- @_checks_drafts(name="uri", raises=ValueError)
- def is_uri(instance):
- if not isinstance(instance, str_types):
- return True
- return rfc3987.parse(instance, rule="URI")
-
- @_checks_drafts(
- draft6="uri-reference",
- draft7="uri-reference",
- raises=ValueError,
- )
- def is_uri_reference(instance):
- if not isinstance(instance, str_types):
- return True
- return rfc3987.parse(instance, rule="URI_reference")
-
-
-try:
- from strict_rfc3339 import validate_rfc3339
-except ImportError:
- try:
- from rfc3339_validator import validate_rfc3339
- except ImportError:
- validate_rfc3339 = None
-
-if validate_rfc3339:
- @_checks_drafts(name="date-time")
- def is_datetime(instance):
- if not isinstance(instance, str_types):
- return True
- return validate_rfc3339(instance)
-
- @_checks_drafts(draft7="time")
- def is_time(instance):
- if not isinstance(instance, str_types):
- return True
- return is_datetime("1970-01-01T" + instance)
-
-
@_checks_drafts(name="regex", raises=re.error)
def is_regex(instance):
if not isinstance(instance, str_types):
@@ -340,86 +250,3 @@ def is_draft3_time(instance):
if not isinstance(instance, str_types):
return True
return datetime.datetime.strptime(instance, "%H:%M:%S")
-
-
-try:
- import webcolors
-except ImportError:
- pass
-else:
- def is_css_color_code(instance):
- return webcolors.normalize_hex(instance)
-
- @_checks_drafts(draft3="color", raises=(ValueError, TypeError))
- def is_css21_color(instance):
- if (
- not isinstance(instance, str_types) or
- instance.lower() in webcolors.css21_names_to_hex
- ):
- return True
- return is_css_color_code(instance)
-
- def is_css3_color(instance):
- if instance.lower() in webcolors.css3_names_to_hex:
- return True
- return is_css_color_code(instance)
-
-
-try:
- import jsonpointer
-except ImportError:
- pass
-else:
- @_checks_drafts(
- draft6="json-pointer",
- draft7="json-pointer",
- raises=jsonpointer.JsonPointerException,
- )
- def is_json_pointer(instance):
- if not isinstance(instance, str_types):
- return True
- return jsonpointer.JsonPointer(instance)
-
- # TODO: I don't want to maintain this, so it
- # needs to go either into jsonpointer (pending
- # https://github.com/stefankoegl/python-json-pointer/issues/34) or
- # into a new external library.
- @_checks_drafts(
- draft7="relative-json-pointer",
- raises=jsonpointer.JsonPointerException,
- )
- def is_relative_json_pointer(instance):
- # Definition taken from:
- # https://tools.ietf.org/html/draft-handrews-relative-json-pointer-01#section-3
- if not isinstance(instance, str_types):
- return True
- non_negative_integer, rest = [], ""
- for i, character in enumerate(instance):
- if character.isdigit():
- non_negative_integer.append(character)
- continue
-
- if not non_negative_integer:
- return False
-
- rest = instance[i:]
- break
- return (rest == "#") or jsonpointer.JsonPointer(rest)
-
-
-try:
- import uritemplate.exceptions
-except ImportError:
- pass
-else:
- @_checks_drafts(
- draft6="uri-template",
- draft7="uri-template",
- raises=uritemplate.exceptions.InvalidTemplate,
- )
- def is_uri_template(
- instance,
- template_validator=uritemplate.Validator().force_balanced_braces(),
- ):
- template = uritemplate.URITemplate(instance)
- return template_validator.validate(template)

View File

@@ -27,8 +27,6 @@
from llnl.util.lang import dedupe, memoized
from llnl.util.symlink import islink, readlink, resolve_link_target_relative_to_the_link, symlink
from spack.util.executable import Executable, which
from ..path import path_to_os_path, system_path_filter
if sys.platform != "win32":
@@ -53,7 +51,6 @@
"find_all_headers",
"find_libraries",
"find_system_libraries",
"fix_darwin_install_name",
"force_remove",
"force_symlink",
"getuid",
@@ -248,42 +245,6 @@ def path_contains_subdirectory(path, root):
return norm_path.startswith(norm_root)
@memoized
def file_command(*args):
"""Creates entry point to `file` system command with provided arguments"""
file_cmd = which("file", required=True)
for arg in args:
file_cmd.add_default_arg(arg)
return file_cmd
@memoized
def _get_mime_type():
"""Generate method to call `file` system command to aquire mime type
for a specified path
"""
if sys.platform == "win32":
# -h option (no-dereference) does not exist in Windows
return file_command("-b", "--mime-type")
else:
return file_command("-b", "-h", "--mime-type")
def mime_type(filename):
"""Returns the mime type and subtype of a file.
Args:
filename: file to be analyzed
Returns:
Tuple containing the MIME type and subtype
"""
output = _get_mime_type()(filename, output=str, error=str).strip()
tty.debug("==> " + output)
type, _, subtype = output.partition("/")
return type, subtype
#: This generates the library filenames that may appear on any OS.
library_extensions = ["a", "la", "so", "tbd", "dylib"]
@@ -1624,6 +1585,12 @@ def remove_linked_tree(path):
shutil.rmtree(os.path.realpath(path), **kwargs)
os.unlink(path)
else:
if sys.platform == "win32":
# Adding this prefix allows shutil to remove long paths on windows
# https://learn.microsoft.com/en-us/windows/win32/fileio/maximum-file-path-limitation?tabs=registry
long_path_pfx = "\\\\?\\"
if not path.startswith(long_path_pfx):
path = long_path_pfx + path
shutil.rmtree(path, **kwargs)
@@ -1673,41 +1640,6 @@ def safe_remove(*files_or_dirs):
raise
@system_path_filter
def fix_darwin_install_name(path):
"""Fix install name of dynamic libraries on Darwin to have full path.
There are two parts of this task:
1. Use ``install_name('-id', ...)`` to change install name of a single lib
2. Use ``install_name('-change', ...)`` to change the cross linking between
libs. The function assumes that all libraries are in one folder and
currently won't follow subfolders.
Parameters:
path (str): directory in which .dylib files are located
"""
libs = glob.glob(join_path(path, "*.dylib"))
for lib in libs:
# fix install name first:
install_name_tool = Executable("install_name_tool")
install_name_tool("-id", lib, lib)
otool = Executable("otool")
long_deps = otool("-L", lib, output=str).split("\n")
deps = [dep.partition(" ")[0][1::] for dep in long_deps[2:-1]]
# fix all dependencies:
for dep in deps:
for loc in libs:
# We really want to check for either
# dep == os.path.basename(loc) or
# dep == join_path(builddir, os.path.basename(loc)),
# but we don't know builddir (nor how symbolic links look
# in builddir). We thus only compare the basenames.
if os.path.basename(dep) == os.path.basename(loc):
install_name_tool("-change", dep, loc, lib)
break
def find_first(root: str, files: Union[Iterable[str], str], bfs_depth: int = 2) -> Optional[str]:
"""Find the first file matching a pattern.

View File

@@ -6,7 +6,6 @@
import collections.abc
import contextlib
import functools
import inspect
import itertools
import os
import re
@@ -16,7 +15,7 @@
from typing import Any, Callable, Iterable, List, Tuple
# Ignore emacs backups when listing modules
ignore_modules = [r"^\.#", "~$"]
ignore_modules = r"^\.#|~$"
def index_by(objects, *funcs):
@@ -84,20 +83,6 @@ def index_by(objects, *funcs):
return result
def caller_locals():
"""This will return the locals of the *parent* of the caller.
This allows a function to insert variables into its caller's
scope. Yes, this is some black magic, and yes it's useful
for implementing things like depends_on and provides.
"""
# Passing zero here skips line context for speed.
stack = inspect.stack(0)
try:
return stack[2][0].f_locals
finally:
del stack
def attr_setdefault(obj, name, value):
"""Like dict.setdefault, but for objects."""
if not hasattr(obj, name):
@@ -105,15 +90,6 @@ def attr_setdefault(obj, name, value):
return getattr(obj, name)
def has_method(cls, name):
for base in inspect.getmro(cls):
if base is object:
continue
if name in base.__dict__:
return True
return False
def union_dicts(*dicts):
"""Use update() to combine all dicts into one.
@@ -178,19 +154,22 @@ def list_modules(directory, **kwargs):
order."""
list_directories = kwargs.setdefault("directories", True)
for name in os.listdir(directory):
if name == "__init__.py":
continue
ignore = re.compile(ignore_modules)
path = os.path.join(directory, name)
if list_directories and os.path.isdir(path):
init_py = os.path.join(path, "__init__.py")
if os.path.isfile(init_py):
yield name
with os.scandir(directory) as it:
for entry in it:
if entry.name == "__init__.py" or entry.name == "__pycache__":
continue
elif name.endswith(".py"):
if not any(re.search(pattern, name) for pattern in ignore_modules):
yield re.sub(".py$", "", name)
if (
list_directories
and entry.is_dir()
and os.path.isfile(os.path.join(entry.path, "__init__.py"))
):
yield entry.name
elif entry.name.endswith(".py") and entry.is_file() and not ignore.search(entry.name):
yield entry.name[:-3] # strip .py
def decorator_with_or_without_args(decorator):
@@ -237,8 +216,8 @@ def setter(name, value):
value.__name__ = name
setattr(cls, name, value)
if not has_method(cls, "_cmp_key"):
raise TypeError("'%s' doesn't define _cmp_key()." % cls.__name__)
if not hasattr(cls, "_cmp_key"):
raise TypeError(f"'{cls.__name__}' doesn't define _cmp_key().")
setter("__eq__", lambda s, o: (s is o) or (o is not None and s._cmp_key() == o._cmp_key()))
setter("__lt__", lambda s, o: o is not None and s._cmp_key() < o._cmp_key())
@@ -388,8 +367,8 @@ def cd_fun():
TypeError: If the class does not have a ``_cmp_iter`` method
"""
if not has_method(cls, "_cmp_iter"):
raise TypeError("'%s' doesn't define _cmp_iter()." % cls.__name__)
if not hasattr(cls, "_cmp_iter"):
raise TypeError(f"'{cls.__name__}' doesn't define _cmp_iter().")
# comparison operators are implemented in terms of lazy_eq and lazy_lt
def eq(self, other):
@@ -864,20 +843,19 @@ def uniq(sequence):
return uniq_list
def elide_list(line_list, max_num=10):
def elide_list(line_list: List[str], max_num: int = 10) -> List[str]:
"""Takes a long list and limits it to a smaller number of elements,
replacing intervening elements with '...'. For example::
elide_list([1,2,3,4,5,6], 4)
elide_list(["1", "2", "3", "4", "5", "6"], 4)
gives::
[1, 2, 3, '...', 6]
["1", "2", "3", "...", "6"]
"""
if len(line_list) > max_num:
return line_list[: max_num - 1] + ["..."] + line_list[-1:]
else:
return line_list
return [*line_list[: max_num - 1], "...", line_list[-1]]
return line_list
@contextlib.contextmanager

View File

@@ -10,6 +10,7 @@
import errno
import io
import multiprocessing
import multiprocessing.connection
import os
import re
import select

View File

@@ -1,131 +0,0 @@
# Copyright 2013-2024 Lawrence Livermore National Security, LLC and other
# Spack Project Developers. See the top-level COPYRIGHT file for details.
#
# SPDX-License-Identifier: (Apache-2.0 OR MIT)
import os
from llnl.util.lang import memoized
import spack.spec
import spack.version
from spack.compilers.clang import Clang
from spack.util.executable import Executable, ProcessError
class ABI:
"""This class provides methods to test ABI compatibility between specs.
The current implementation is rather rough and could be improved."""
def architecture_compatible(
self, target: spack.spec.Spec, constraint: spack.spec.Spec
) -> bool:
"""Return true if architecture of target spec is ABI compatible
to the architecture of constraint spec. If either the target
or constraint specs have no architecture, target is also defined
as architecture ABI compatible to constraint."""
return (
not target.architecture
or not constraint.architecture
or target.architecture.intersects(constraint.architecture)
)
@memoized
def _gcc_get_libstdcxx_version(self, version):
"""Returns gcc ABI compatibility info by getting the library version of
a compiler's libstdc++ or libgcc_s"""
from spack.build_environment import dso_suffix
spec = spack.spec.CompilerSpec("gcc", version)
compilers = spack.compilers.compilers_for_spec(spec)
if not compilers:
return None
compiler = compilers[0]
rungcc = None
libname = None
output = None
if compiler.cxx:
rungcc = Executable(compiler.cxx)
libname = "libstdc++." + dso_suffix
elif compiler.cc:
rungcc = Executable(compiler.cc)
libname = "libgcc_s." + dso_suffix
else:
return None
try:
# Some gcc's are actually clang and don't respond properly to
# --print-file-name (they just print the filename, not the
# full path). Ignore these and expect them to be handled as clang.
if Clang.default_version(rungcc.exe[0]) != "unknown":
return None
output = rungcc("--print-file-name=%s" % libname, output=str)
except ProcessError:
return None
if not output:
return None
libpath = os.path.realpath(output.strip())
if not libpath:
return None
return os.path.basename(libpath)
@memoized
def _gcc_compiler_compare(self, pversion, cversion):
"""Returns true iff the gcc version pversion and cversion
are ABI compatible."""
plib = self._gcc_get_libstdcxx_version(pversion)
clib = self._gcc_get_libstdcxx_version(cversion)
if not plib or not clib:
return False
return plib == clib
def _intel_compiler_compare(
self, pversion: spack.version.ClosedOpenRange, cversion: spack.version.ClosedOpenRange
) -> bool:
"""Returns true iff the intel version pversion and cversion
are ABI compatible"""
# Test major and minor versions. Ignore build version.
pv = pversion.lo
cv = cversion.lo
return pv.up_to(2) == cv.up_to(2)
def compiler_compatible(
self, parent: spack.spec.Spec, child: spack.spec.Spec, loose: bool = False
) -> bool:
"""Return true if compilers for parent and child are ABI compatible."""
if not parent.compiler or not child.compiler:
return True
if parent.compiler.name != child.compiler.name:
# Different compiler families are assumed ABI incompatible
return False
if loose:
return True
# TODO: Can we move the specialized ABI matching stuff
# TODO: into compiler classes?
for pversion in parent.compiler.versions:
for cversion in child.compiler.versions:
# For a few compilers use specialized comparisons.
# Otherwise match on version match.
if pversion.intersects(cversion):
return True
elif parent.compiler.name == "gcc" and self._gcc_compiler_compare(
pversion, cversion
):
return True
elif parent.compiler.name == "intel" and self._intel_compiler_compare(
pversion, cversion
):
return True
return False
def compatible(
self, target: spack.spec.Spec, constraint: spack.spec.Spec, loose: bool = False
) -> bool:
"""Returns true if target spec is ABI compatible to constraint spec"""
return self.architecture_compatible(target, constraint) and self.compiler_compatible(
target, constraint, loose=loose
)

View File

@@ -39,9 +39,9 @@ def _search_duplicate_compilers(error_cls):
import collections
import collections.abc
import glob
import inspect
import io
import itertools
import os
import pathlib
import pickle
import re
@@ -210,6 +210,11 @@ def _search_duplicate_compilers(error_cls):
group="configs", tag="CFG-PACKAGES", description="Sanity checks on packages.yaml", kwargs=()
)
#: Sanity checks on packages.yaml
config_repos = AuditClass(
group="configs", tag="CFG-REPOS", description="Sanity checks on repositories", kwargs=()
)
@config_packages
def _search_duplicate_specs_in_externals(error_cls):
@@ -252,40 +257,6 @@ def _search_duplicate_specs_in_externals(error_cls):
return errors
@config_packages
def _deprecated_preferences(error_cls):
"""Search package preferences deprecated in v0.21 (and slated for removal in v0.23)"""
# TODO (v0.23): remove this audit as the attributes will not be allowed in config
errors = []
packages_yaml = spack.config.CONFIG.get_config("packages")
def make_error(attribute_name, config_data, summary):
s = io.StringIO()
s.write("Occurring in the following file:\n")
dict_view = syaml.syaml_dict((k, v) for k, v in config_data.items() if k == attribute_name)
syaml.dump_config(dict_view, stream=s, blame=True)
return error_cls(summary=summary, details=[s.getvalue()])
if "all" in packages_yaml and "version" in packages_yaml["all"]:
summary = "Using the deprecated 'version' attribute under 'packages:all'"
errors.append(make_error("version", packages_yaml["all"], summary))
for package_name in packages_yaml:
if package_name == "all":
continue
package_conf = packages_yaml[package_name]
for attribute in ("compiler", "providers", "target"):
if attribute not in package_conf:
continue
summary = (
f"Using the deprecated '{attribute}' attribute " f"under 'packages:{package_name}'"
)
errors.append(make_error(attribute, package_conf, summary))
return errors
@config_packages
def _avoid_mismatched_variants(error_cls):
"""Warns if variant preferences have mismatched types or names."""
@@ -351,6 +322,43 @@ def _wrongly_named_spec(error_cls):
return errors
@config_packages
def _ensure_all_virtual_packages_have_default_providers(error_cls):
"""All virtual packages must have a default provider explicitly set."""
configuration = spack.config.create()
defaults = configuration.get("packages", scope="defaults")
default_providers = defaults["all"]["providers"]
virtuals = spack.repo.PATH.provider_index.providers
default_providers_filename = configuration.scopes["defaults"].get_section_filename("packages")
return [
error_cls(f"'{virtual}' must have a default provider in {default_providers_filename}", [])
for virtual in virtuals
if virtual not in default_providers
]
@config_repos
def _ensure_no_folders_without_package_py(error_cls):
"""Check that we don't leave any folder without a package.py in repos"""
errors = []
for repository in spack.repo.PATH.repos:
missing = []
for entry in os.scandir(repository.packages_path):
if not entry.is_dir():
continue
package_py = pathlib.Path(entry.path) / spack.repo.package_file_name
if not package_py.exists():
missing.append(entry.path)
if missing:
summary = (
f"The '{repository.namespace}' repository misses a package.py file"
f" in the following folders"
)
errors.append(error_cls(summary=summary, details=[f"{x}" for x in missing]))
return errors
def _make_config_error(config_data, summary, error_cls):
s = io.StringIO()
s.write("Occurring in the following file:\n")
@@ -482,7 +490,7 @@ def _search_for_reserved_attributes_names_in_packages(pkgs, error_cls):
name_definitions = collections.defaultdict(list)
pkg_cls = spack.repo.PATH.get_pkg_class(pkg_name)
for cls_item in inspect.getmro(pkg_cls):
for cls_item in pkg_cls.__mro__:
for name in RESERVED_NAMES:
current_value = cls_item.__dict__.get(name)
if current_value is None:
@@ -511,7 +519,7 @@ def _ensure_all_package_names_are_lowercase(pkgs, error_cls):
badname_regex, errors = re.compile(r"[_A-Z]"), []
for pkg_name in pkgs:
if badname_regex.search(pkg_name):
error_msg = "Package name '{}' is either lowercase or conatine '_'".format(pkg_name)
error_msg = f"Package name '{pkg_name}' should be lowercase and must not contain '_'"
errors.append(error_cls(error_msg, []))
return errors

File diff suppressed because it is too large Load Diff

View File

@@ -9,6 +9,7 @@
all_core_root_specs,
ensure_clingo_importable_or_raise,
ensure_core_dependencies,
ensure_file_in_path_or_raise,
ensure_gpg_in_path_or_raise,
ensure_patchelf_in_path_or_raise,
)
@@ -19,6 +20,7 @@
"is_bootstrapping",
"ensure_bootstrap_configuration",
"ensure_core_dependencies",
"ensure_file_in_path_or_raise",
"ensure_gpg_in_path_or_raise",
"ensure_clingo_importable_or_raise",
"ensure_patchelf_in_path_or_raise",

View File

@@ -4,6 +4,7 @@
# SPDX-License-Identifier: (Apache-2.0 OR MIT)
"""Common basic functions used through the spack.bootstrap package"""
import fnmatch
import importlib
import os.path
import re
import sys
@@ -28,7 +29,7 @@
def _python_import(module: str) -> bool:
try:
__import__(module)
importlib.import_module(module)
except ImportError:
return False
return True

View File

@@ -0,0 +1,154 @@
# Copyright 2013-2024 Lawrence Livermore National Security, LLC and other
# Spack Project Developers. See the top-level COPYRIGHT file for details.
#
# SPDX-License-Identifier: (Apache-2.0 OR MIT)
"""Bootstrap concrete specs for clingo
Spack uses clingo to concretize specs. When clingo itself needs to be bootstrapped from sources,
we need to rely on another mechanism to get a concrete spec that fits the current host.
This module contains the logic to get a concrete spec for clingo, starting from a prototype
JSON file for a similar platform.
"""
import pathlib
import sys
from typing import Dict, Optional, Tuple
import archspec.cpu
import spack.compiler
import spack.compilers
import spack.platforms
import spack.spec
import spack.traverse
from .config import spec_for_current_python
class ClingoBootstrapConcretizer:
def __init__(self, configuration):
self.host_platform = spack.platforms.host()
self.host_os = self.host_platform.operating_system("frontend")
self.host_target = archspec.cpu.host().family
self.host_architecture = spack.spec.ArchSpec.frontend_arch()
self.host_architecture.target = str(self.host_target)
self.host_compiler = self._valid_compiler_or_raise()
self.host_python = self.python_external_spec()
if str(self.host_platform) == "linux":
self.host_libc = self.libc_external_spec()
self.external_cmake, self.external_bison = self._externals_from_yaml(configuration)
def _valid_compiler_or_raise(self) -> "spack.compiler.Compiler":
if str(self.host_platform) == "linux":
compiler_name = "gcc"
elif str(self.host_platform) == "darwin":
compiler_name = "apple-clang"
elif str(self.host_platform) == "windows":
compiler_name = "msvc"
elif str(self.host_platform) == "freebsd":
compiler_name = "clang"
else:
raise RuntimeError(f"Cannot bootstrap clingo from sources on {self.host_platform}")
candidates = spack.compilers.compilers_for_spec(
compiler_name, arch_spec=self.host_architecture
)
if not candidates:
raise RuntimeError(
f"Cannot find any version of {compiler_name} to bootstrap clingo from sources"
)
candidates.sort(key=lambda x: x.spec.version, reverse=True)
return candidates[0]
def _externals_from_yaml(
self, configuration: "spack.config.Configuration"
) -> Tuple[Optional["spack.spec.Spec"], Optional["spack.spec.Spec"]]:
packages_yaml = configuration.get("packages")
requirements = {"cmake": "@3.20:", "bison": "@2.5:"}
selected: Dict[str, Optional["spack.spec.Spec"]] = {"cmake": None, "bison": None}
for pkg_name in ["cmake", "bison"]:
if pkg_name not in packages_yaml:
continue
candidates = packages_yaml[pkg_name].get("externals", [])
for candidate in candidates:
s = spack.spec.Spec(candidate["spec"], external_path=candidate["prefix"])
if not s.satisfies(requirements[pkg_name]):
continue
if not s.intersects(f"%{self.host_compiler.spec}"):
continue
if not s.intersects(f"arch={self.host_architecture}"):
continue
selected[pkg_name] = self._external_spec(s)
break
return selected["cmake"], selected["bison"]
def prototype_path(self) -> pathlib.Path:
"""Path to a prototype concrete specfile for clingo"""
parent_dir = pathlib.Path(__file__).parent
result = parent_dir / "prototypes" / f"clingo-{self.host_platform}-{self.host_target}.json"
if str(self.host_platform) == "linux":
# Using aarch64 as a fallback, since it has gnuconfig (x86_64 doesn't have it)
if not result.exists():
result = parent_dir / "prototypes" / f"clingo-{self.host_platform}-aarch64.json"
elif str(self.host_platform) == "freebsd":
result = parent_dir / "prototypes" / f"clingo-{self.host_platform}-amd64.json"
elif not result.exists():
raise RuntimeError(f"Cannot bootstrap clingo from sources on {self.host_platform}")
return result
def concretize(self) -> "spack.spec.Spec":
# Read the prototype and mark it NOT concrete
s = spack.spec.Spec.from_specfile(str(self.prototype_path()))
s._mark_concrete(False)
# Tweak it to conform to the host architecture
for node in s.traverse():
node.architecture.os = str(self.host_os)
node.compiler = self.host_compiler.spec
node.architecture = self.host_architecture
if node.name == "gcc-runtime":
node.versions = self.host_compiler.spec.versions
for edge in spack.traverse.traverse_edges([s], cover="edges"):
if edge.spec.name == "python":
edge.spec = self.host_python
if edge.spec.name == "bison" and self.external_bison:
edge.spec = self.external_bison
if edge.spec.name == "cmake" and self.external_cmake:
edge.spec = self.external_cmake
if "libc" in edge.virtuals:
edge.spec = self.host_libc
s._finalize_concretization()
# Work around the fact that the installer calls Spec.dependents() and
# we modified edges inconsistently
return s.copy()
def python_external_spec(self) -> "spack.spec.Spec":
"""Python external spec corresponding to the current running interpreter"""
result = spack.spec.Spec(spec_for_current_python(), external_path=sys.exec_prefix)
return self._external_spec(result)
def libc_external_spec(self) -> "spack.spec.Spec":
result = self.host_compiler.default_libc
return self._external_spec(result)
def _external_spec(self, initial_spec) -> "spack.spec.Spec":
initial_spec.namespace = "builtin"
initial_spec.compiler = self.host_compiler.spec
initial_spec.architecture = self.host_architecture
for flag_type in spack.spec.FlagMap.valid_compiler_flags():
initial_spec.compiler_flags[flag_type] = []
return spack.spec.parse_with_version_concrete(initial_spec)

View File

@@ -143,11 +143,7 @@ def _bootstrap_config_scopes() -> Sequence["spack.config.ConfigScope"]:
def _add_compilers_if_missing() -> None:
arch = spack.spec.ArchSpec.frontend_arch()
if not spack.compilers.compilers_for_arch(arch):
new_compilers = spack.compilers.find_new_compilers(
mixed_toolchain=sys.platform == "darwin"
)
if new_compilers:
spack.compilers.add_compilers_to_config(new_compilers)
spack.compilers.find_compilers()
@contextlib.contextmanager
@@ -156,7 +152,7 @@ def _ensure_bootstrap_configuration() -> Generator:
bootstrap_store_path = store_path()
user_configuration = _read_and_sanitize_configuration()
with spack.environment.no_active_environment():
with spack.platforms.prevent_cray_detection(), spack.platforms.use_platform(
with spack.platforms.use_platform(
spack.platforms.real_host()
), spack.repo.use_repositories(spack.paths.packages_path):
# Default configuration scopes excluding command line

View File

@@ -54,6 +54,7 @@
import spack.version
from ._common import _executables_in_store, _python_import, _root_spec, _try_import_from_store
from .clingo import ClingoBootstrapConcretizer
from .config import spack_python_interpreter, spec_for_current_python
#: Name of the file containing metadata about the bootstrapping source
@@ -268,15 +269,13 @@ def try_import(self, module: str, abstract_spec_str: str) -> bool:
# Try to build and install from sources
with spack_python_interpreter():
# Add hint to use frontend operating system on Cray
concrete_spec = spack.spec.Spec(abstract_spec_str + " ^" + spec_for_current_python())
if module == "clingo":
# TODO: remove when the old concretizer is deprecated # pylint: disable=fixme
concrete_spec._old_concretize( # pylint: disable=protected-access
deprecation_warning=False
)
bootstrapper = ClingoBootstrapConcretizer(configuration=spack.config.CONFIG)
concrete_spec = bootstrapper.concretize()
else:
concrete_spec = spack.spec.Spec(
abstract_spec_str + " ^" + spec_for_current_python()
)
concrete_spec.concretize()
msg = "[BOOTSTRAP MODULE {0}] Try installing '{1}' from sources"
@@ -303,14 +302,7 @@ def try_search_path(self, executables: Tuple[str], abstract_spec_str: str) -> bo
# might reduce compilation time by a fair amount
_add_externals_if_missing()
concrete_spec = spack.spec.Spec(abstract_spec_str)
if concrete_spec.name == "patchelf":
concrete_spec._old_concretize( # pylint: disable=protected-access
deprecation_warning=False
)
else:
concrete_spec.concretize()
concrete_spec = spack.spec.Spec(abstract_spec_str).concretized()
msg = "[BOOTSTRAP] Try installing '{0}' from sources"
tty.debug(msg.format(abstract_spec_str))
with spack.config.override(self.mirror_scope):
@@ -480,7 +472,8 @@ def ensure_clingo_importable_or_raise() -> None:
def gnupg_root_spec() -> str:
"""Return the root spec used to bootstrap GnuPG"""
return _root_spec("gnupg@2.3:")
root_spec_name = "win-gpg" if IS_WINDOWS else "gnupg"
return _root_spec(f"{root_spec_name}@2.3:")
def ensure_gpg_in_path_or_raise() -> None:
@@ -490,6 +483,19 @@ def ensure_gpg_in_path_or_raise() -> None:
)
def file_root_spec() -> str:
"""Return the root spec used to bootstrap file"""
root_spec_name = "win-file" if IS_WINDOWS else "file"
return _root_spec(root_spec_name)
def ensure_file_in_path_or_raise() -> None:
"""Ensure file is in the PATH or raise"""
return ensure_executables_in_path_or_raise(
executables=["file"], abstract_spec=file_root_spec()
)
def patchelf_root_spec() -> str:
"""Return the root spec used to bootstrap patchelf"""
# 0.13.1 is the last version not to require C++17.
@@ -573,14 +579,15 @@ def ensure_core_dependencies() -> None:
"""Ensure the presence of all the core dependencies."""
if sys.platform.lower() == "linux":
ensure_patchelf_in_path_or_raise()
if not IS_WINDOWS:
ensure_gpg_in_path_or_raise()
elif sys.platform == "win32":
ensure_file_in_path_or_raise()
ensure_gpg_in_path_or_raise()
ensure_clingo_importable_or_raise()
def all_core_root_specs() -> List[str]:
"""Return a list of all the core root specs that may be used to bootstrap Spack"""
return [clingo_root_spec(), gnupg_root_spec(), patchelf_root_spec()]
return [clingo_root_spec(), gnupg_root_spec(), patchelf_root_spec(), file_root_spec()]
def bootstrapping_sources(scope: Optional[str] = None):

File diff suppressed because one or more lines are too long

File diff suppressed because one or more lines are too long

File diff suppressed because one or more lines are too long

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View File

@@ -88,7 +88,7 @@ def _core_requirements() -> List[RequiredResponseType]:
def _buildcache_requirements() -> List[RequiredResponseType]:
_buildcache_exes = {
"file": _missing("file", "required to analyze files for buildcaches"),
"file": _missing("file", "required to analyze files for buildcaches", system_only=False),
("gpg2", "gpg"): _missing("gpg2", "required to sign/verify buildcaches", False),
}
if platform.system().lower() == "darwin":
@@ -124,7 +124,7 @@ def _development_requirements() -> List[RequiredResponseType]:
# Ensure we trigger environment modifications if we have an environment
if BootstrapEnvironment.spack_yaml().exists():
with BootstrapEnvironment() as env:
env.update_syspath_and_environ()
env.load()
return [
_required_executable(

View File

@@ -457,9 +457,12 @@ def set_wrapper_variables(pkg, env):
env.set(SPACK_DEBUG_LOG_ID, pkg.spec.format("{name}-{hash:7}"))
env.set(SPACK_DEBUG_LOG_DIR, spack.main.spack_working_dir)
# Find ccache binary and hand it to build environment
if spack.config.get("config:ccache"):
# Enable ccache in the compiler wrapper
env.set(SPACK_CCACHE_BINARY, spack.util.executable.which_string("ccache", required=True))
else:
# Avoid cache pollution if a build system forces `ccache <compiler wrapper invocation>`.
env.set("CCACHE_DISABLE", "1")
# Gather information about various types of dependencies
link_deps = set(pkg.spec.traverse(root=False, deptype=("link")))
@@ -1000,7 +1003,6 @@ def set_all_package_py_globals(self):
"""Set the globals in modules of package.py files."""
for dspec, flag in chain(self.external, self.nonexternal):
pkg = dspec.package
if self.should_set_package_py_globals & flag:
if self.context == Context.BUILD and self.needs_build_context & flag:
set_package_py_globals(pkg, context=Context.BUILD)
@@ -1008,6 +1010,12 @@ def set_all_package_py_globals(self):
# This includes runtime dependencies, also runtime deps of direct build deps.
set_package_py_globals(pkg, context=Context.RUN)
# Looping over the set of packages a second time
# ensures all globals are loaded into the module space prior to
# any package setup. This guarantees package setup methods have
# access to expected module level definitions such as "spack_cc"
for dspec, flag in chain(self.external, self.nonexternal):
pkg = dspec.package
for spec in dspec.dependents():
# Note: some specs have dependents that are unreachable from the root, so avoid
# setting globals for those.
@@ -1473,7 +1481,7 @@ def long_message(self):
out.write(" {0}\n".format(self.log_name))
# Also output the test log path IF it exists
if self.context != "test":
if self.context != "test" and have_log:
test_log = join_path(os.path.dirname(self.log_name), spack_install_test_log)
if os.path.isfile(test_log):
out.write("\nSee test log for details:\n")
@@ -1550,21 +1558,21 @@ class ModuleChangePropagator:
_PROTECTED_NAMES = ("package", "current_module", "modules_in_mro", "_set_attributes")
def __init__(self, package):
def __init__(self, package: spack.package_base.PackageBase) -> None:
self._set_self_attributes("package", package)
self._set_self_attributes("current_module", package.module)
#: Modules for the classes in the MRO up to PackageBase
modules_in_mro = []
for cls in inspect.getmro(type(package)):
module = cls.module
for cls in package.__class__.__mro__:
module = getattr(cls, "module", None)
if module == self.current_module:
continue
if module == spack.package_base:
if module is None or module is spack.package_base:
break
if module is self.current_module:
continue
modules_in_mro.append(module)
self._set_self_attributes("modules_in_mro", modules_in_mro)
self._set_self_attributes("_set_attributes", {})

View File

@@ -2,7 +2,6 @@
# Spack Project Developers. See the top-level COPYRIGHT file for details.
#
# SPDX-License-Identifier: (Apache-2.0 OR MIT)
import inspect
import os
import os.path
import stat
@@ -549,13 +548,12 @@ def autoreconf(self, pkg, spec, prefix):
tty.warn("* a custom AUTORECONF phase in the package *")
tty.warn("*********************************************************")
with fs.working_dir(self.configure_directory):
m = inspect.getmodule(self.pkg)
# This line is what is needed most of the time
# --install, --verbose, --force
autoreconf_args = ["-ivf"]
autoreconf_args += self.autoreconf_search_path_args
autoreconf_args += self.autoreconf_extra_args
m.autoreconf(*autoreconf_args)
self.pkg.module.autoreconf(*autoreconf_args)
@property
def autoreconf_search_path_args(self):
@@ -579,7 +577,9 @@ def set_configure_or_die(self):
raise RuntimeError(msg.format(self.configure_directory))
# Monkey-patch the configure script in the corresponding module
inspect.getmodule(self.pkg).configure = Executable(self.configure_abs_path)
globals_for_pkg = spack.build_environment.ModuleChangePropagator(self.pkg)
globals_for_pkg.configure = Executable(self.configure_abs_path)
globals_for_pkg.propagate_changes_to_mro()
def configure_args(self):
"""Return the list of all the arguments that must be passed to configure,
@@ -596,7 +596,7 @@ def configure(self, pkg, spec, prefix):
options += self.configure_args()
with fs.working_dir(self.build_directory, create=True):
inspect.getmodule(self.pkg).configure(*options)
pkg.module.configure(*options)
def build(self, pkg, spec, prefix):
"""Run "make" on the build targets specified by the builder."""
@@ -604,12 +604,12 @@ def build(self, pkg, spec, prefix):
params = ["V=1"]
params += self.build_targets
with fs.working_dir(self.build_directory):
inspect.getmodule(self.pkg).make(*params)
pkg.module.make(*params)
def install(self, pkg, spec, prefix):
"""Run "make" on the install targets specified by the builder."""
with fs.working_dir(self.build_directory):
inspect.getmodule(self.pkg).make(*self.install_targets)
pkg.module.make(*self.install_targets)
spack.builder.run_after("build")(execute_build_time_tests)

View File

@@ -3,8 +3,6 @@
#
# SPDX-License-Identifier: (Apache-2.0 OR MIT)
import inspect
import llnl.util.filesystem as fs
import spack.builder
@@ -72,9 +70,7 @@ def check_args(self):
def build(self, pkg, spec, prefix):
"""Runs ``cargo install`` in the source directory"""
with fs.working_dir(self.build_directory):
inspect.getmodule(pkg).cargo(
"install", "--root", "out", "--path", ".", *self.build_args
)
pkg.module.cargo("install", "--root", "out", "--path", ".", *self.build_args)
def install(self, pkg, spec, prefix):
"""Copy build files into package prefix."""
@@ -86,4 +82,4 @@ def install(self, pkg, spec, prefix):
def check(self):
"""Run "cargo test"."""
with fs.working_dir(self.build_directory):
inspect.getmodule(self.pkg).cargo("test", *self.check_args)
self.pkg.module.cargo("test", *self.check_args)

View File

@@ -3,7 +3,6 @@
#
# SPDX-License-Identifier: (Apache-2.0 OR MIT)
import collections.abc
import inspect
import os
import pathlib
import platform
@@ -108,6 +107,11 @@ def _conditional_cmake_defaults(pkg: spack.package_base.PackageBase, args: List[
if _supports_compilation_databases(pkg):
args.append(CMakeBuilder.define("CMAKE_EXPORT_COMPILE_COMMANDS", True))
# Enable MACOSX_RPATH by default when cmake_minimum_required < 3
# https://cmake.org/cmake/help/latest/policy/CMP0042.html
if pkg.spec.satisfies("platform=darwin") and cmake.satisfies("@3:"):
args.append(CMakeBuilder.define("CMAKE_POLICY_DEFAULT_CMP0042", "NEW"))
def generator(*names: str, default: Optional[str] = None):
"""The build system generator to use.
@@ -539,24 +543,24 @@ def cmake(self, pkg, spec, prefix):
options += self.cmake_args()
options.append(os.path.abspath(self.root_cmakelists_dir))
with fs.working_dir(self.build_directory, create=True):
inspect.getmodule(self.pkg).cmake(*options)
pkg.module.cmake(*options)
def build(self, pkg, spec, prefix):
"""Make the build targets"""
with fs.working_dir(self.build_directory):
if self.generator == "Unix Makefiles":
inspect.getmodule(self.pkg).make(*self.build_targets)
pkg.module.make(*self.build_targets)
elif self.generator == "Ninja":
self.build_targets.append("-v")
inspect.getmodule(self.pkg).ninja(*self.build_targets)
pkg.module.ninja(*self.build_targets)
def install(self, pkg, spec, prefix):
"""Make the install targets"""
with fs.working_dir(self.build_directory):
if self.generator == "Unix Makefiles":
inspect.getmodule(self.pkg).make(*self.install_targets)
pkg.module.make(*self.install_targets)
elif self.generator == "Ninja":
inspect.getmodule(self.pkg).ninja(*self.install_targets)
pkg.module.ninja(*self.install_targets)
spack.builder.run_after("build")(execute_build_time_tests)

View File

@@ -124,6 +124,8 @@ def cuda_flags(arch_list):
# minimum supported versions
conflicts("%gcc@:4", when="+cuda ^cuda@11.0:")
conflicts("%gcc@:5", when="+cuda ^cuda@11.4:")
conflicts("%gcc@:7.2", when="+cuda ^cuda@12.4:")
conflicts("%clang@:6", when="+cuda ^cuda@12.2:")
# maximum supported version
# NOTE:
@@ -136,7 +138,7 @@ def cuda_flags(arch_list):
conflicts("%gcc@11.2:", when="+cuda ^cuda@:11.5")
conflicts("%gcc@12:", when="+cuda ^cuda@:11.8")
conflicts("%gcc@13:", when="+cuda ^cuda@:12.3")
conflicts("%gcc@14:", when="+cuda ^cuda@:12.5")
conflicts("%gcc@14:", when="+cuda ^cuda@:12.6")
conflicts("%clang@12:", when="+cuda ^cuda@:11.4.0")
conflicts("%clang@13:", when="+cuda ^cuda@:11.5")
conflicts("%clang@14:", when="+cuda ^cuda@:11.7")
@@ -144,6 +146,7 @@ def cuda_flags(arch_list):
conflicts("%clang@16:", when="+cuda ^cuda@:12.1")
conflicts("%clang@17:", when="+cuda ^cuda@:12.3")
conflicts("%clang@18:", when="+cuda ^cuda@:12.5")
conflicts("%clang@19:", when="+cuda ^cuda@:12.6")
# https://gist.github.com/ax3l/9489132#gistcomment-3860114
conflicts("%gcc@10", when="+cuda ^cuda@:11.4.0")
@@ -211,12 +214,16 @@ def cuda_flags(arch_list):
conflicts("%intel@19.0:", when="+cuda ^cuda@:10.0")
conflicts("%intel@19.1:", when="+cuda ^cuda@:10.1")
conflicts("%intel@19.2:", when="+cuda ^cuda@:11.1.0")
conflicts("%intel@2021:", when="+cuda ^cuda@:11.4.0")
# XL is mostly relevant for ppc64le Linux
conflicts("%xl@:12,14:", when="+cuda ^cuda@:9.1")
conflicts("%xl@:12,14:15,17:", when="+cuda ^cuda@9.2")
conflicts("%xl@:12,17:", when="+cuda ^cuda@:11.1.0")
# PowerPC.
conflicts("target=ppc64le", when="+cuda ^cuda@12.5:")
# Darwin.
# TODO: add missing conflicts for %apple-clang cuda@:10
conflicts("platform=darwin", when="+cuda ^cuda@11.0.2: ")
conflicts("platform=darwin", when="+cuda ^cuda@11.0.2:")

View File

@@ -3,8 +3,6 @@
#
# SPDX-License-Identifier: (Apache-2.0 OR MIT)
import inspect
import llnl.util.filesystem as fs
import spack.builder
@@ -72,7 +70,7 @@ def build_directory(self):
def build_args(self):
"""Arguments for ``go build``."""
# Pass ldflags -s = --strip-all and -w = --no-warnings by default
return ["-ldflags", "-s -w", "-o", f"{self.pkg.name}"]
return ["-modcacherw", "-ldflags", "-s -w", "-o", f"{self.pkg.name}"]
@property
def check_args(self):
@@ -82,7 +80,7 @@ def check_args(self):
def build(self, pkg, spec, prefix):
"""Runs ``go build`` in the source directory"""
with fs.working_dir(self.build_directory):
inspect.getmodule(pkg).go("build", *self.build_args)
pkg.module.go("build", *self.build_args)
def install(self, pkg, spec, prefix):
"""Install built binaries into prefix bin."""
@@ -95,4 +93,4 @@ def install(self, pkg, spec, prefix):
def check(self):
"""Run ``go test .`` in the source directory"""
with fs.working_dir(self.build_directory):
inspect.getmodule(self.pkg).go("test", *self.check_args)
self.pkg.module.go("test", *self.check_args)

View File

@@ -2,7 +2,6 @@
# Spack Project Developers. See the top-level COPYRIGHT file for details.
#
# SPDX-License-Identifier: (Apache-2.0 OR MIT)
import inspect
from typing import List
import llnl.util.filesystem as fs
@@ -103,12 +102,12 @@ def edit(self, pkg, spec, prefix):
def build(self, pkg, spec, prefix):
"""Run "make" on the build targets specified by the builder."""
with fs.working_dir(self.build_directory):
inspect.getmodule(self.pkg).make(*self.build_targets)
pkg.module.make(*self.build_targets)
def install(self, pkg, spec, prefix):
"""Run "make" on the install targets specified by the builder."""
with fs.working_dir(self.build_directory):
inspect.getmodule(self.pkg).make(*self.install_targets)
pkg.module.make(*self.install_targets)
spack.builder.run_after("build")(execute_build_time_tests)

View File

@@ -2,7 +2,6 @@
# Spack Project Developers. See the top-level COPYRIGHT file for details.
#
# SPDX-License-Identifier: (Apache-2.0 OR MIT)
import inspect
import os
from typing import List
@@ -195,19 +194,19 @@ def meson(self, pkg, spec, prefix):
options += self.std_meson_args
options += self.meson_args()
with fs.working_dir(self.build_directory, create=True):
inspect.getmodule(self.pkg).meson(*options)
pkg.module.meson(*options)
def build(self, pkg, spec, prefix):
"""Make the build targets"""
options = ["-v"]
options += self.build_targets
with fs.working_dir(self.build_directory):
inspect.getmodule(self.pkg).ninja(*options)
pkg.module.ninja(*options)
def install(self, pkg, spec, prefix):
"""Make the install targets"""
with fs.working_dir(self.build_directory):
inspect.getmodule(self.pkg).ninja(*self.install_targets)
pkg.module.ninja(*self.install_targets)
spack.builder.run_after("build")(execute_build_time_tests)

View File

@@ -2,7 +2,6 @@
# Spack Project Developers. See the top-level COPYRIGHT file for details.
#
# SPDX-License-Identifier: (Apache-2.0 OR MIT)
import inspect
from typing import List # novm
import llnl.util.filesystem as fs
@@ -104,7 +103,7 @@ def msbuild_install_args(self):
def build(self, pkg, spec, prefix):
"""Run "msbuild" on the build targets specified by the builder."""
with fs.working_dir(self.build_directory):
inspect.getmodule(self.pkg).msbuild(
pkg.module.msbuild(
*self.std_msbuild_args,
*self.msbuild_args(),
self.define_targets(*self.build_targets),
@@ -114,6 +113,6 @@ def install(self, pkg, spec, prefix):
"""Run "msbuild" on the install targets specified by the builder.
This is INSTALL by default"""
with fs.working_dir(self.build_directory):
inspect.getmodule(self.pkg).msbuild(
pkg.module.msbuild(
*self.msbuild_install_args(), self.define_targets(*self.install_targets)
)

View File

@@ -2,7 +2,6 @@
# Spack Project Developers. See the top-level COPYRIGHT file for details.
#
# SPDX-License-Identifier: (Apache-2.0 OR MIT)
import inspect
from typing import List # novm
import llnl.util.filesystem as fs
@@ -132,9 +131,7 @@ def build(self, pkg, spec, prefix):
if self.makefile_name:
opts.append("/F{}".format(self.makefile_name))
with fs.working_dir(self.build_directory):
inspect.getmodule(self.pkg).nmake(
*opts, *self.build_targets, ignore_quotes=self.ignore_quotes
)
pkg.module.nmake(*opts, *self.build_targets, ignore_quotes=self.ignore_quotes)
def install(self, pkg, spec, prefix):
"""Run "nmake" on the install targets specified by the builder.
@@ -146,6 +143,4 @@ def install(self, pkg, spec, prefix):
opts.append("/F{}".format(self.makefile_name))
opts.append(self.define("PREFIX", fs.windows_sfn(prefix)))
with fs.working_dir(self.build_directory):
inspect.getmodule(self.pkg).nmake(
*opts, *self.install_targets, ignore_quotes=self.ignore_quotes
)
pkg.module.nmake(*opts, *self.install_targets, ignore_quotes=self.ignore_quotes)

View File

@@ -2,8 +2,6 @@
# Spack Project Developers. See the top-level COPYRIGHT file for details.
#
# SPDX-License-Identifier: (Apache-2.0 OR MIT)
import inspect
import spack.builder
import spack.package_base
from spack.directives import build_system, extends
@@ -47,7 +45,7 @@ class OctaveBuilder(BaseBuilder):
def install(self, pkg, spec, prefix):
"""Install the package from the archive file"""
inspect.getmodule(self.pkg).octave(
pkg.module.octave(
"--quiet",
"--norc",
"--built-in-docstrings-file=/dev/null",

View File

@@ -3,7 +3,6 @@
#
# SPDX-License-Identifier: (Apache-2.0 OR MIT)
"""Common utilities for managing intel oneapi packages."""
import getpass
import os
import platform
import shutil
@@ -13,6 +12,7 @@
from llnl.util.filesystem import HeaderList, LibraryList, find_libraries, join_path, mkdirp
from llnl.util.link_tree import LinkTree
import spack.util.path
from spack.build_environment import dso_suffix
from spack.directives import conflicts, license, redistribute, variant
from spack.package_base import InstallError
@@ -99,7 +99,7 @@ def install_component(self, installer_path):
# with other install depends on the userid. For root, we
# delete the installercache before and after install. For
# non root we redefine the HOME environment variable.
if getpass.getuser() == "root":
if spack.util.path.get_user() == "root":
shutil.rmtree("/var/intel/installercache", ignore_errors=True)
bash = Executable("bash")
@@ -122,7 +122,7 @@ def install_component(self, installer_path):
self.prefix,
)
if getpass.getuser() == "root":
if spack.util.path.get_user() == "root":
shutil.rmtree("/var/intel/installercache", ignore_errors=True)
# Some installers have a bug and do not return an error code when failing

View File

@@ -2,7 +2,6 @@
# Spack Project Developers. See the top-level COPYRIGHT file for details.
#
# SPDX-License-Identifier: (Apache-2.0 OR MIT)
import inspect
import os
from typing import Iterable
@@ -134,7 +133,7 @@ def build_method(self):
def build_executable(self):
"""Returns the executable method to build the perl package"""
if self.build_method == "Makefile.PL":
build_executable = inspect.getmodule(self.pkg).make
build_executable = self.pkg.module.make
elif self.build_method == "Build.PL":
build_executable = Executable(os.path.join(self.pkg.stage.source_path, "Build"))
return build_executable
@@ -158,7 +157,7 @@ def configure(self, pkg, spec, prefix):
options = ["Build.PL", "--install_base", prefix]
options += self.configure_args()
inspect.getmodule(self.pkg).perl(*options)
pkg.module.perl(*options)
# It is possible that the shebang in the Build script that is created from
# Build.PL may be too long causing the build to fail. Patching the shebang

View File

@@ -4,7 +4,6 @@
# SPDX-License-Identifier: (Apache-2.0 OR MIT)
import functools
import inspect
import operator
import os
import re
@@ -17,7 +16,7 @@
import llnl.util.filesystem as fs
import llnl.util.lang as lang
import llnl.util.tty as tty
from llnl.util.filesystem import HeaderList, LibraryList
from llnl.util.filesystem import HeaderList, LibraryList, join_path
import spack.builder
import spack.config
@@ -120,6 +119,12 @@ def skip_modules(self) -> Iterable[str]:
"""
return []
@property
def bindir(self) -> str:
"""Path to Python package's bindir, bin on unix like OS's Scripts on Windows"""
windows = self.spec.satisfies("platform=windows")
return join_path(self.spec.prefix, "Scripts" if windows else "bin")
def view_file_conflicts(self, view, merge_map):
"""Report all file conflicts, excepting special cases for python.
Specifically, this does not report errors for duplicate
@@ -222,7 +227,7 @@ def test_imports(self) -> None:
# Make sure we are importing the installed modules,
# not the ones in the source directory
python = inspect.getmodule(self).python # type: ignore[union-attr]
python = self.module.python
for module in self.import_modules:
with test_part(
self,
@@ -309,9 +314,9 @@ def get_external_python_for_prefix(self):
)
python_externals_detected = [
d.spec
for d in python_externals_detection.get("python", [])
if d.prefix == self.spec.external_path
spec
for spec in python_externals_detection.get("python", [])
if spec.external_path == self.spec.external_path
]
if python_externals_detected:
return python_externals_detected[0]

View File

@@ -2,8 +2,6 @@
# Spack Project Developers. See the top-level COPYRIGHT file for details.
#
# SPDX-License-Identifier: (Apache-2.0 OR MIT)
import inspect
from llnl.util.filesystem import working_dir
import spack.builder
@@ -66,17 +64,17 @@ def qmake_args(self):
def qmake(self, pkg, spec, prefix):
"""Run ``qmake`` to configure the project and generate a Makefile."""
with working_dir(self.build_directory):
inspect.getmodule(self.pkg).qmake(*self.qmake_args())
pkg.module.qmake(*self.qmake_args())
def build(self, pkg, spec, prefix):
"""Make the build targets"""
with working_dir(self.build_directory):
inspect.getmodule(self.pkg).make()
pkg.module.make()
def install(self, pkg, spec, prefix):
"""Make the install targets"""
with working_dir(self.build_directory):
inspect.getmodule(self.pkg).make("install")
pkg.module.make("install")
def check(self):
"""Search the Makefile for a ``check:`` target and runs it if found."""

View File

@@ -2,7 +2,6 @@
# Spack Project Developers. See the top-level COPYRIGHT file for details.
#
# SPDX-License-Identifier: (Apache-2.0 OR MIT)
import inspect
from typing import Optional, Tuple
import llnl.util.lang as lang
@@ -51,7 +50,7 @@ def install(self, pkg, spec, prefix):
args.extend(["--library={0}".format(self.pkg.module.r_lib_dir), self.stage.source_path])
inspect.getmodule(self.pkg).R(*args)
pkg.module.R(*args)
class RPackage(Package):

View File

@@ -3,7 +3,6 @@
#
# SPDX-License-Identifier: (Apache-2.0 OR MIT)
import glob
import inspect
import spack.builder
import spack.package_base
@@ -52,10 +51,10 @@ def build(self, pkg, spec, prefix):
gemspecs = glob.glob("*.gemspec")
rakefiles = glob.glob("Rakefile")
if gemspecs:
inspect.getmodule(self.pkg).gem("build", "--norc", gemspecs[0])
pkg.module.gem("build", "--norc", gemspecs[0])
elif rakefiles:
jobs = inspect.getmodule(self.pkg).make_jobs
inspect.getmodule(self.pkg).rake("package", "-j{0}".format(jobs))
jobs = pkg.module.make_jobs
pkg.module.rake("package", "-j{0}".format(jobs))
else:
# Some Ruby packages only ship `*.gem` files, so nothing to build
pass
@@ -70,6 +69,6 @@ def install(self, pkg, spec, prefix):
# if --install-dir is not used, GEM_PATH is deleted from the
# environement, and Gems required to build native extensions will
# not be found. Those extensions are built during `gem install`.
inspect.getmodule(self.pkg).gem(
pkg.module.gem(
"install", "--norc", "--ignore-dependencies", "--install-dir", prefix, gems[0]
)

View File

@@ -2,8 +2,6 @@
# Spack Project Developers. See the top-level COPYRIGHT file for details.
#
# SPDX-License-Identifier: (Apache-2.0 OR MIT)
import inspect
import spack.builder
import spack.package_base
from spack.directives import build_system, depends_on
@@ -63,8 +61,7 @@ def build_args(self, spec, prefix):
def build(self, pkg, spec, prefix):
"""Build the package."""
args = self.build_args(spec, prefix)
inspect.getmodule(self.pkg).scons(*args)
pkg.module.scons(*self.build_args(spec, prefix))
def install_args(self, spec, prefix):
"""Arguments to pass to install."""
@@ -72,9 +69,7 @@ def install_args(self, spec, prefix):
def install(self, pkg, spec, prefix):
"""Install the package."""
args = self.install_args(spec, prefix)
inspect.getmodule(self.pkg).scons("install", *args)
pkg.module.scons("install", *self.install_args(spec, prefix))
def build_test(self):
"""Run unit tests after build.

View File

@@ -2,7 +2,6 @@
# Spack Project Developers. See the top-level COPYRIGHT file for details.
#
# SPDX-License-Identifier: (Apache-2.0 OR MIT)
import inspect
import os
import re
@@ -86,14 +85,13 @@ def import_modules(self):
def python(self, *args, **kwargs):
"""The python ``Executable``."""
inspect.getmodule(self).python(*args, **kwargs)
self.pkg.module.python(*args, **kwargs)
def test_imports(self):
"""Attempts to import modules of the installed package."""
# Make sure we are importing the installed modules,
# not the ones in the source directory
python = inspect.getmodule(self).python
for module in self.import_modules:
with spack.install_test.test_part(
self,
@@ -101,7 +99,7 @@ def test_imports(self):
purpose="checking import of {0}".format(module),
work_dir="spack-test",
):
python("-c", "import {0}".format(module))
self.python("-c", "import {0}".format(module))
@spack.builder.builder("sip")
@@ -136,9 +134,13 @@ def configure(self, pkg, spec, prefix):
"""Configure the package."""
# https://www.riverbankcomputing.com/static/Docs/sip/command_line_tools.html
args = ["--verbose", "--target-dir", inspect.getmodule(self.pkg).python_platlib]
args = ["--verbose", "--target-dir", pkg.module.python_platlib]
args.extend(self.configure_args())
# https://github.com/Python-SIP/sip/commit/cb0be6cb6e9b756b8b0db3136efb014f6fb9b766
if spec["py-sip"].satisfies("@6.1.0:"):
args.extend(["--scripts-dir", pkg.prefix.bin])
sip_build = Executable(spec["py-sip"].prefix.bin.join("sip-build"))
sip_build(*args)
@@ -151,7 +153,7 @@ def build(self, pkg, spec, prefix):
args = self.build_args()
with working_dir(self.build_directory):
inspect.getmodule(self.pkg).make(*args)
pkg.module.make(*args)
def build_args(self):
"""Arguments to pass to build."""
@@ -162,7 +164,7 @@ def install(self, pkg, spec, prefix):
args = self.install_args()
with working_dir(self.build_directory):
inspect.getmodule(self.pkg).make("install", *args)
pkg.module.make("install", *args)
def install_args(self):
"""Arguments to pass to install."""

View File

@@ -2,8 +2,6 @@
# Spack Project Developers. See the top-level COPYRIGHT file for details.
#
# SPDX-License-Identifier: (Apache-2.0 OR MIT)
import inspect
from llnl.util.filesystem import working_dir
import spack.builder
@@ -90,11 +88,11 @@ def build_directory(self):
def python(self, *args, **kwargs):
"""The python ``Executable``."""
inspect.getmodule(self.pkg).python(*args, **kwargs)
self.pkg.module.python(*args, **kwargs)
def waf(self, *args, **kwargs):
"""Runs the waf ``Executable``."""
jobs = inspect.getmodule(self.pkg).make_jobs
jobs = self.pkg.module.make_jobs
with working_dir(self.build_directory):
self.python("waf", "-j{0}".format(jobs), *args, **kwargs)

View File

@@ -6,12 +6,12 @@
import collections.abc
import copy
import functools
import inspect
from typing import List, Optional, Tuple
from llnl.util import lang
import spack.build_environment
import spack.multimethod
#: Builder classes, as registered by the "builder" decorator
BUILDER_CLS = {}
@@ -96,11 +96,10 @@ class hierarchy (look at AspellDictPackage for an example of that)
Args:
pkg (spack.package_base.PackageBase): package object for which we need a builder
"""
package_module = inspect.getmodule(pkg)
package_buildsystem = buildsystem_name(pkg)
default_builder_cls = BUILDER_CLS[package_buildsystem]
builder_cls_name = default_builder_cls.__name__
builder_cls = getattr(package_module, builder_cls_name, None)
builder_cls = getattr(pkg.module, builder_cls_name, None)
if builder_cls:
return builder_cls(pkg)
@@ -295,7 +294,11 @@ def _decorator(fn):
return _decorator
class BuilderMeta(PhaseCallbacksMeta, type(collections.abc.Sequence)): # type: ignore
class BuilderMeta(
PhaseCallbacksMeta,
spack.multimethod.MultiMethodMeta,
type(collections.abc.Sequence), # type: ignore
):
pass

View File

@@ -9,11 +9,11 @@
import llnl.util.lang
from llnl.util.filesystem import mkdirp
from llnl.util.symlink import symlink
import spack.config
import spack.error
import spack.fetch_strategy
import spack.mirror
import spack.paths
import spack.util.file_cache
import spack.util.path
@@ -74,23 +74,6 @@ def store(self, fetcher, relative_dest):
mkdirp(os.path.dirname(dst))
fetcher.archive(dst)
def symlink(self, mirror_ref):
"""Symlink a human readible path in our mirror to the actual
storage location."""
cosmetic_path = os.path.join(self.root, mirror_ref.cosmetic_path)
storage_path = os.path.join(self.root, mirror_ref.storage_path)
relative_dst = os.path.relpath(storage_path, start=os.path.dirname(cosmetic_path))
if not os.path.exists(cosmetic_path):
if os.path.lexists(cosmetic_path):
# In this case the link itself exists but it is broken: remove
# it and recreate it (in order to fix any symlinks broken prior
# to https://github.com/spack/spack/pull/13908)
os.unlink(cosmetic_path)
mkdirp(os.path.dirname(cosmetic_path))
symlink(relative_dst, cosmetic_path)
#: Spack's local cache for downloaded source archives
FETCH_CACHE: Union[spack.fetch_strategy.FsCache, llnl.util.lang.Singleton] = (

View File

@@ -38,6 +38,7 @@
import spack.paths
import spack.repo
import spack.spec
import spack.stage
import spack.util.git
import spack.util.gpg as gpg_util
import spack.util.spack_yaml as syaml
@@ -71,7 +72,7 @@
# TODO: Remove this in Spack 0.23
SHARED_PR_MIRROR_URL = "s3://spack-binaries-prs/shared_pr_mirror"
JOB_NAME_FORMAT = (
"{name}{@version} {/hash:7} {%compiler.name}{@compiler.version}{arch=architecture}"
"{name}{@version} {/hash:7} {%compiler.name}{@compiler.version}{ arch=architecture}"
)
IS_WINDOWS = sys.platform == "win32"
spack_gpg = spack.main.SpackCommand("gpg")
@@ -1107,9 +1108,10 @@ def main_script_replacements(cmd):
if cdash_handler and cdash_handler.auth_token:
try:
cdash_handler.populate_buildgroup(all_job_names)
except (SpackError, HTTPError, URLError) as err:
except (SpackError, HTTPError, URLError, TimeoutError) as err:
tty.warn(f"Problem populating buildgroup: {err}")
else:
elif cdash_config:
# warn only if there was actually a CDash configuration.
tty.warn("Unable to populate buildgroup without CDash credentials")
service_job_retries = {
@@ -1370,15 +1372,6 @@ def can_verify_binaries():
return len(gpg_util.public_keys()) >= 1
def _push_to_build_cache(spec: spack.spec.Spec, sign_binaries: bool, mirror_url: str) -> None:
"""Unchecked version of the public API, for easier mocking"""
bindist.push_or_raise(
spec,
spack.mirror.Mirror.from_url(mirror_url).push_url,
bindist.PushOptions(force=True, unsigned=not sign_binaries),
)
def push_to_build_cache(spec: spack.spec.Spec, mirror_url: str, sign_binaries: bool) -> bool:
"""Push one or more binary packages to the mirror.
@@ -1389,20 +1382,15 @@ def push_to_build_cache(spec: spack.spec.Spec, mirror_url: str, sign_binaries: b
sign_binaries: If True, spack will attempt to sign binary package before pushing.
"""
tty.debug(f"Pushing to build cache ({'signed' if sign_binaries else 'unsigned'})")
signing_key = bindist.select_signing_key() if sign_binaries else None
mirror = spack.mirror.Mirror.from_url(mirror_url)
try:
_push_to_build_cache(spec, sign_binaries, mirror_url)
with bindist.make_uploader(mirror, signing_key=signing_key) as uploader:
uploader.push_or_raise([spec])
return True
except bindist.PushToBuildCacheError as e:
tty.error(str(e))
tty.error(f"Problem writing to {mirror_url}: {e}")
return False
except Exception as e:
# TODO (zackgalbreath): write an adapter for boto3 exceptions so we can catch a specific
# exception instead of parsing str(e)...
msg = str(e)
if any(x in msg for x in ["Access Denied", "InvalidAccessKeyId"]):
tty.error(f"Permission problem writing to {mirror_url}: {msg}")
return False
raise
def remove_other_mirrors(mirrors_to_keep, scope=None):
@@ -1448,10 +1436,6 @@ def copy_stage_logs_to_artifacts(job_spec: spack.spec.Spec, job_log_dir: str) ->
job_log_dir: path into which build log should be copied
"""
tty.debug(f"job spec: {job_spec}")
if not job_spec:
msg = f"Cannot copy stage logs: job spec ({job_spec}) is required"
tty.error(msg)
return
try:
pkg_cls = spack.repo.PATH.get_pkg_class(job_spec.name)
@@ -2083,7 +2067,7 @@ def read_broken_spec(broken_spec_url):
"""
try:
_, _, fs = web_util.read_from_url(broken_spec_url)
except (URLError, web_util.SpackWebError, HTTPError):
except web_util.SpackWebError:
tty.warn(f"Unable to read broken spec from {broken_spec_url}")
return None

View File

@@ -4,6 +4,7 @@
# SPDX-License-Identifier: (Apache-2.0 OR MIT)
import argparse
import importlib
import os
import re
import sys
@@ -114,8 +115,8 @@ def get_module(cmd_name):
try:
# Try to import the command from the built-in directory
module_name = "%s.%s" % (__name__, pname)
module = __import__(module_name, fromlist=[pname, SETUP_PARSER, DESCRIPTION], level=0)
module_name = f"{__name__}.{pname}"
module = importlib.import_module(module_name)
tty.debug("Imported {0} from built-in commands".format(pname))
except ImportError:
module = spack.extensions.get_module(cmd_name)
@@ -237,7 +238,7 @@ def ensure_single_spec_or_die(spec, matching_specs):
if len(matching_specs) <= 1:
return
format_string = "{name}{@version}{%compiler.name}{@compiler.version}{arch=architecture}"
format_string = "{name}{@version}{%compiler.name}{@compiler.version}{ arch=architecture}"
args = ["%s matches multiple packages." % spec, "Matching packages:"]
args += [
colorize(" @K{%s} " % s.dag_hash(7)) + s.cformat(format_string) for s in matching_specs

View File

@@ -3,28 +3,24 @@
#
# SPDX-License-Identifier: (Apache-2.0 OR MIT)
import argparse
import copy
import glob
import hashlib
import json
import multiprocessing
import multiprocessing.pool
import os
import shutil
import sys
import tempfile
from typing import Dict, List, Optional, Tuple, Union
from typing import List, Tuple
import llnl.util.tty as tty
from llnl.string import plural
from llnl.util.lang import elide_list
from llnl.util.lang import elide_list, stable_partition
import spack.binary_distribution as bindist
import spack.cmd
import spack.config
import spack.deptypes as dt
import spack.environment as ev
import spack.error
import spack.hash_types as ht
import spack.mirror
import spack.oci.oci
import spack.oci.opener
@@ -35,28 +31,12 @@
import spack.store
import spack.user_environment
import spack.util.crypto
import spack.util.parallel
import spack.util.url as url_util
import spack.util.web as web_util
from spack import traverse
from spack.build_environment import determine_number_of_jobs
from spack.cmd import display_specs
from spack.cmd.common import arguments
from spack.oci.image import (
Digest,
ImageReference,
default_config,
default_index_tag,
default_manifest,
default_tag,
tag_is_spec,
)
from spack.oci.oci import (
copy_missing_layers_with_retry,
get_manifest_and_config_with_retry,
list_tags,
upload_blob_with_retry,
upload_manifest_with_retry,
)
from spack.spec import Spec, save_dependency_specfiles
description = "create, download and install binary packages"
@@ -112,6 +92,17 @@ def setup_parser(subparser: argparse.ArgumentParser):
"Alternatively, one can decide to build a cache for only the package or only the "
"dependencies",
)
with_or_without_build_deps = push.add_mutually_exclusive_group()
with_or_without_build_deps.add_argument(
"--with-build-dependencies",
action="store_true",
help="include build dependencies in the buildcache",
)
with_or_without_build_deps.add_argument(
"--without-build-dependencies",
action="store_true",
help="exclude build dependencies from the buildcache",
)
push.add_argument(
"--fail-fast",
action="store_true",
@@ -329,39 +320,6 @@ def _format_spec(spec: Spec) -> str:
return spec.cformat("{name}{@version}{/hash:7}")
def _progress(i: int, total: int):
if total > 1:
digits = len(str(total))
return f"[{i+1:{digits}}/{total}] "
return ""
class NoPool:
def map(self, func, args):
return [func(a) for a in args]
def starmap(self, func, args):
return [func(*a) for a in args]
def __enter__(self):
return self
def __exit__(self, *args):
pass
MaybePool = Union[multiprocessing.pool.Pool, NoPool]
def _make_pool() -> MaybePool:
"""Can't use threading because it's unsafe, and can't use spawned processes because of globals.
That leaves only forking"""
if multiprocessing.get_start_method() == "fork":
return multiprocessing.pool.Pool(determine_number_of_jobs(parallel=True))
else:
return NoPool()
def _skip_no_redistribute_for_public(specs):
remaining_specs = list()
removed_specs = list()
@@ -381,6 +339,45 @@ def _skip_no_redistribute_for_public(specs):
return remaining_specs
class PackagesAreNotInstalledError(spack.error.SpackError):
"""Raised when a list of specs is not installed but picked to be packaged."""
def __init__(self, specs: List[Spec]):
super().__init__(
"Cannot push non-installed packages",
", ".join(elide_list([_format_spec(s) for s in specs], 5)),
)
class PackageNotInstalledError(spack.error.SpackError):
"""Raised when a spec is not installed but picked to be packaged."""
def _specs_to_be_packaged(
requested: List[Spec], things_to_install: str, build_deps: bool
) -> List[Spec]:
"""Collect all non-external with or without roots and dependencies"""
if "dependencies" not in things_to_install:
deptype = dt.NONE
elif build_deps:
deptype = dt.ALL
else:
deptype = dt.RUN | dt.LINK | dt.TEST
specs = [
s
for s in traverse.traverse_nodes(
requested,
root="package" in things_to_install,
deptype=deptype,
order="breadth",
key=traverse.by_dag_hash,
)
if not s.external
]
specs.reverse()
return specs
def push_fn(args):
"""create a binary package and push it to a mirror"""
if args.spec_file:
@@ -394,13 +391,8 @@ def push_fn(args):
else:
roots = spack.cmd.require_active_env(cmd_name="buildcache push").concrete_roots()
mirror: spack.mirror.Mirror = args.mirror
# Check if this is an OCI image.
try:
target_image = spack.oci.oci.image_from_mirror(mirror)
except ValueError:
target_image = None
mirror = args.mirror
assert isinstance(mirror, spack.mirror.Mirror)
push_url = mirror.push_url
@@ -411,92 +403,52 @@ def push_fn(args):
unsigned = not (args.key or args.signed)
# For OCI images, we require dependencies to be pushed for now.
if target_image:
if "dependencies" not in args.things_to_install:
tty.die("Dependencies must be pushed for OCI images.")
if not unsigned:
tty.warn(
"Code signing is currently not supported for OCI images. "
"Use --unsigned to silence this warning."
)
if mirror.push_url.startswith("oci://") and not unsigned:
tty.warn(
"Code signing is currently not supported for OCI images. "
"Use --unsigned to silence this warning."
)
unsigned = True
# This is a list of installed, non-external specs.
specs = bindist.specs_to_be_packaged(
# Select a signing key, or None if unsigned.
signing_key = None if unsigned else (args.key or bindist.select_signing_key())
specs = _specs_to_be_packaged(
roots,
root="package" in args.things_to_install,
dependencies="dependencies" in args.things_to_install,
things_to_install=args.things_to_install,
build_deps=args.with_build_dependencies or not args.without_build_dependencies,
)
if not args.private:
specs = _skip_no_redistribute_for_public(specs)
# When pushing multiple specs, print the url once ahead of time, as well as how
# many specs are being pushed.
if len(specs) > 1:
tty.info(f"Selected {len(specs)} specs to push to {push_url}")
failed = []
# TODO: unify this logic in the future.
if target_image:
base_image = ImageReference.from_string(args.base_image) if args.base_image else None
with tempfile.TemporaryDirectory(
dir=spack.stage.get_stage_root()
) as tmpdir, _make_pool() as pool:
skipped, base_images, checksums = _push_oci(
target_image=target_image,
base_image=base_image,
installed_specs_with_deps=specs,
force=args.force,
tmpdir=tmpdir,
pool=pool,
)
# Apart from creating manifests for each individual spec, we allow users to create a
# separate image tag for all root specs and their runtime dependencies.
if args.tag:
tagged_image = target_image.with_tag(args.tag)
# _push_oci may not populate base_images if binaries were already in the registry
for spec in roots:
_update_base_images(
base_image=base_image,
target_image=target_image,
spec=spec,
base_image_cache=base_images,
)
_put_manifest(base_images, checksums, tagged_image, tmpdir, None, None, *roots)
tty.info(f"Tagged {tagged_image}")
else:
skipped = []
for i, spec in enumerate(specs):
try:
bindist.push_or_raise(
spec,
push_url,
bindist.PushOptions(
force=args.force,
unsigned=unsigned,
key=args.key,
regenerate_index=args.update_index,
),
# Pushing not installed specs is an error. Either fail fast or populate the error list and
# push installed package in best effort mode.
failed: List[Tuple[Spec, BaseException]] = []
with spack.store.STORE.db.read_transaction():
if any(not s.installed for s in specs):
specs, not_installed = stable_partition(specs, lambda s: s.installed)
if args.fail_fast:
raise PackagesAreNotInstalledError(not_installed)
else:
failed.extend(
(s, PackageNotInstalledError("package not installed")) for s in not_installed
)
msg = f"{_progress(i, len(specs))}Pushed {_format_spec(spec)}"
if len(specs) == 1:
msg += f" to {push_url}"
tty.info(msg)
except bindist.NoOverwriteException:
skipped.append(_format_spec(spec))
# Catch any other exception unless the fail fast option is set
except Exception as e:
if args.fail_fast or isinstance(
e, (bindist.PickKeyException, bindist.NoKeyException)
):
raise
failed.append((_format_spec(spec), e))
with bindist.make_uploader(
mirror=mirror,
force=args.force,
update_index=args.update_index,
signing_key=signing_key,
base_image=args.base_image,
) as uploader:
skipped, upload_errors = uploader.push(specs=specs)
failed.extend(upload_errors)
if not upload_errors and args.tag:
uploader.tag(args.tag, roots)
if skipped:
if len(specs) == 1:
@@ -508,7 +460,7 @@ def push_fn(args):
"The following {} specs were skipped as they already exist in the buildcache:\n"
" {}\n"
" Use --force to overwrite them.".format(
len(skipped), ", ".join(elide_list(skipped, 5))
len(skipped), ", ".join(elide_list([_format_spec(s) for s in skipped], 5))
)
)
@@ -519,389 +471,15 @@ def push_fn(args):
raise spack.error.SpackError(
f"The following {len(failed)} errors occurred while pushing specs to the buildcache",
"\n".join(
elide_list([f" {spec}: {e.__class__.__name__}: {e}" for spec, e in failed], 5)
),
)
# Update the index if requested
# TODO: remove update index logic out of bindist; should be once after all specs are pushed
# not once per spec.
if target_image and len(skipped) < len(specs) and args.update_index:
with tempfile.TemporaryDirectory(
dir=spack.stage.get_stage_root()
) as tmpdir, _make_pool() as pool:
_update_index_oci(target_image, tmpdir, pool)
def _get_spack_binary_blob(image_ref: ImageReference) -> Optional[spack.oci.oci.Blob]:
"""Get the spack tarball layer digests and size if it exists"""
try:
manifest, config = get_manifest_and_config_with_retry(image_ref)
return spack.oci.oci.Blob(
compressed_digest=Digest.from_string(manifest["layers"][-1]["digest"]),
uncompressed_digest=Digest.from_string(config["rootfs"]["diff_ids"][-1]),
size=manifest["layers"][-1]["size"],
)
except Exception:
return None
def _push_single_spack_binary_blob(image_ref: ImageReference, spec: spack.spec.Spec, tmpdir: str):
filename = os.path.join(tmpdir, f"{spec.dag_hash()}.tar.gz")
# Create an oci.image.layer aka tarball of the package
compressed_tarfile_checksum, tarfile_checksum = spack.oci.oci.create_tarball(spec, filename)
blob = spack.oci.oci.Blob(
Digest.from_sha256(compressed_tarfile_checksum),
Digest.from_sha256(tarfile_checksum),
os.path.getsize(filename),
)
# Upload the blob
upload_blob_with_retry(image_ref, file=filename, digest=blob.compressed_digest)
# delete the file
os.unlink(filename)
return blob
def _retrieve_env_dict_from_config(config: dict) -> dict:
"""Retrieve the environment variables from the image config file.
Sets a default value for PATH if it is not present.
Args:
config (dict): The image config file.
Returns:
dict: The environment variables.
"""
env = {"PATH": "/bin:/usr/bin"}
if "Env" in config.get("config", {}):
for entry in config["config"]["Env"]:
key, value = entry.split("=", 1)
env[key] = value
return env
def _archspec_to_gooarch(spec: spack.spec.Spec) -> str:
name = spec.target.family.name
name_map = {"aarch64": "arm64", "x86_64": "amd64"}
return name_map.get(name, name)
def _put_manifest(
base_images: Dict[str, Tuple[dict, dict]],
checksums: Dict[str, spack.oci.oci.Blob],
image_ref: ImageReference,
tmpdir: str,
extra_config: Optional[dict],
annotations: Optional[dict],
*specs: spack.spec.Spec,
):
architecture = _archspec_to_gooarch(specs[0])
dependencies = list(
reversed(
list(
s
for s in traverse.traverse_nodes(
specs, order="topo", deptype=("link", "run"), root=True
elide_list(
[
f" {_format_spec(spec)}: {e.__class__.__name__}: {e}"
for spec, e in failed
],
5,
)
if not s.external
)
)
)
base_manifest, base_config = base_images[architecture]
env = _retrieve_env_dict_from_config(base_config)
# If the base image uses `vnd.docker.distribution.manifest.v2+json`, then we use that too.
# This is because Singularity / Apptainer is very strict about not mixing them.
base_manifest_mediaType = base_manifest.get(
"mediaType", "application/vnd.oci.image.manifest.v1+json"
)
use_docker_format = (
base_manifest_mediaType == "application/vnd.docker.distribution.manifest.v2+json"
)
spack.user_environment.environment_modifications_for_specs(*specs).apply_modifications(env)
# Create an oci.image.config file
config = copy.deepcopy(base_config)
# Add the diff ids of the dependencies
for s in dependencies:
config["rootfs"]["diff_ids"].append(str(checksums[s.dag_hash()].uncompressed_digest))
# Set the environment variables
config["config"]["Env"] = [f"{k}={v}" for k, v in env.items()]
if extra_config:
# From the OCI v1.0 spec:
# > Any extra fields in the Image JSON struct are considered implementation
# > specific and MUST be ignored by any implementations which are unable to
# > interpret them.
config.update(extra_config)
config_file = os.path.join(tmpdir, f"{specs[0].dag_hash()}.config.json")
with open(config_file, "w") as f:
json.dump(config, f, separators=(",", ":"))
config_file_checksum = Digest.from_sha256(
spack.util.crypto.checksum(hashlib.sha256, config_file)
)
# Upload the config file
upload_blob_with_retry(image_ref, file=config_file, digest=config_file_checksum)
manifest = {
"mediaType": base_manifest_mediaType,
"schemaVersion": 2,
"config": {
"mediaType": base_manifest["config"]["mediaType"],
"digest": str(config_file_checksum),
"size": os.path.getsize(config_file),
},
"layers": [
*(layer for layer in base_manifest["layers"]),
*(
{
"mediaType": (
"application/vnd.docker.image.rootfs.diff.tar.gzip"
if use_docker_format
else "application/vnd.oci.image.layer.v1.tar+gzip"
),
"digest": str(checksums[s.dag_hash()].compressed_digest),
"size": checksums[s.dag_hash()].size,
}
for s in dependencies
),
],
}
if not use_docker_format and annotations:
manifest["annotations"] = annotations
# Finally upload the manifest
upload_manifest_with_retry(image_ref, manifest=manifest)
# delete the config file
os.unlink(config_file)
def _update_base_images(
*,
base_image: Optional[ImageReference],
target_image: ImageReference,
spec: spack.spec.Spec,
base_image_cache: Dict[str, Tuple[dict, dict]],
):
"""For a given spec and base image, copy the missing layers of the base image with matching
arch to the registry of the target image. If no base image is specified, create a dummy
manifest and config file."""
architecture = _archspec_to_gooarch(spec)
if architecture in base_image_cache:
return
if base_image is None:
base_image_cache[architecture] = (
default_manifest(),
default_config(architecture, "linux"),
)
else:
base_image_cache[architecture] = copy_missing_layers_with_retry(
base_image, target_image, architecture
)
def _push_oci(
*,
target_image: ImageReference,
base_image: Optional[ImageReference],
installed_specs_with_deps: List[Spec],
tmpdir: str,
pool: MaybePool,
force: bool = False,
) -> Tuple[List[str], Dict[str, Tuple[dict, dict]], Dict[str, spack.oci.oci.Blob]]:
"""Push specs to an OCI registry
Args:
image_ref: The target OCI image
base_image: Optional base image, which will be copied to the target registry.
installed_specs_with_deps: The installed specs to push, excluding externals,
including deps, ordered from roots to leaves.
force: Whether to overwrite existing layers and manifests in the buildcache.
Returns:
A tuple consisting of the list of skipped specs already in the build cache,
a dictionary mapping architectures to base image manifests and configs,
and a dictionary mapping each spec's dag hash to a blob.
"""
# Reverse the order
installed_specs_with_deps = list(reversed(installed_specs_with_deps))
# Spec dag hash -> blob
checksums: Dict[str, spack.oci.oci.Blob] = {}
# arch -> (manifest, config)
base_images: Dict[str, Tuple[dict, dict]] = {}
# Specs not uploaded because they already exist
skipped = []
if not force:
tty.info("Checking for existing specs in the buildcache")
to_be_uploaded = []
tags_to_check = (target_image.with_tag(default_tag(s)) for s in installed_specs_with_deps)
available_blobs = pool.map(_get_spack_binary_blob, tags_to_check)
for spec, maybe_blob in zip(installed_specs_with_deps, available_blobs):
if maybe_blob is not None:
checksums[spec.dag_hash()] = maybe_blob
skipped.append(_format_spec(spec))
else:
to_be_uploaded.append(spec)
else:
to_be_uploaded = installed_specs_with_deps
if not to_be_uploaded:
return skipped, base_images, checksums
tty.info(
f"{len(to_be_uploaded)} specs need to be pushed to "
f"{target_image.domain}/{target_image.name}"
)
# Upload blobs
new_blobs = pool.starmap(
_push_single_spack_binary_blob, ((target_image, spec, tmpdir) for spec in to_be_uploaded)
)
# And update the spec to blob mapping
for spec, blob in zip(to_be_uploaded, new_blobs):
checksums[spec.dag_hash()] = blob
# Copy base images if necessary
for spec in to_be_uploaded:
_update_base_images(
base_image=base_image,
target_image=target_image,
spec=spec,
base_image_cache=base_images,
)
def extra_config(spec: Spec):
spec_dict = spec.to_dict(hash=ht.dag_hash)
spec_dict["buildcache_layout_version"] = 1
spec_dict["binary_cache_checksum"] = {
"hash_algorithm": "sha256",
"hash": checksums[spec.dag_hash()].compressed_digest.digest,
}
return spec_dict
# Upload manifests
tty.info("Uploading manifests")
pool.starmap(
_put_manifest,
(
(
base_images,
checksums,
target_image.with_tag(default_tag(spec)),
tmpdir,
extra_config(spec),
{"org.opencontainers.image.description": spec.format()},
spec,
)
for spec in to_be_uploaded
),
)
# Print the image names of the top-level specs
for spec in to_be_uploaded:
tty.info(f"Pushed {_format_spec(spec)} to {target_image.with_tag(default_tag(spec))}")
return skipped, base_images, checksums
def _config_from_tag(image_ref: ImageReference, tag: str) -> Optional[dict]:
# Don't allow recursion here, since Spack itself always uploads
# vnd.oci.image.manifest.v1+json, not vnd.oci.image.index.v1+json
_, config = get_manifest_and_config_with_retry(image_ref.with_tag(tag), tag, recurse=0)
# Do very basic validation: if "spec" is a key in the config, it
# must be a Spec object too.
return config if "spec" in config else None
def _update_index_oci(image_ref: ImageReference, tmpdir: str, pool: MaybePool) -> None:
tags = list_tags(image_ref)
# Fetch all image config files in parallel
spec_dicts = pool.starmap(
_config_from_tag, ((image_ref, tag) for tag in tags if tag_is_spec(tag))
)
# Populate the database
db_root_dir = os.path.join(tmpdir, "db_root")
db = bindist.BuildCacheDatabase(db_root_dir)
for spec_dict in spec_dicts:
spec = Spec.from_dict(spec_dict)
db.add(spec, directory_layout=None)
db.mark(spec, "in_buildcache", True)
# Create the index.json file
index_json_path = os.path.join(tmpdir, "index.json")
with open(index_json_path, "w") as f:
db._write_to_file(f)
# Create an empty config.json file
empty_config_json_path = os.path.join(tmpdir, "config.json")
with open(empty_config_json_path, "wb") as f:
f.write(b"{}")
# Upload the index.json file
index_shasum = Digest.from_sha256(spack.util.crypto.checksum(hashlib.sha256, index_json_path))
upload_blob_with_retry(image_ref, file=index_json_path, digest=index_shasum)
# Upload the config.json file
empty_config_digest = Digest.from_sha256(
spack.util.crypto.checksum(hashlib.sha256, empty_config_json_path)
)
upload_blob_with_retry(image_ref, file=empty_config_json_path, digest=empty_config_digest)
# Push a manifest file that references the index.json file as a layer
# Notice that we push this as if it is an image, which it of course is not.
# When the ORAS spec becomes official, we can use that instead of a fake image.
# For now we just use the OCI image spec, so that we don't run into issues with
# automatic garbage collection of blobs that are not referenced by any image manifest.
oci_manifest = {
"mediaType": "application/vnd.oci.image.manifest.v1+json",
"schemaVersion": 2,
# Config is just an empty {} file for now, and irrelevant
"config": {
"mediaType": "application/vnd.oci.image.config.v1+json",
"digest": str(empty_config_digest),
"size": os.path.getsize(empty_config_json_path),
},
# The buildcache index is the only layer, and is not a tarball, we lie here.
"layers": [
{
"mediaType": "application/vnd.oci.image.layer.v1.tar+gzip",
"digest": str(index_shasum),
"size": os.path.getsize(index_json_path),
}
],
}
upload_manifest_with_retry(image_ref.with_tag(default_index_tag), oci_manifest)
def install_fn(args):
@@ -1182,14 +760,15 @@ def update_index(mirror: spack.mirror.Mirror, update_keys=False):
if image_ref:
with tempfile.TemporaryDirectory(
dir=spack.stage.get_stage_root()
) as tmpdir, _make_pool() as pool:
_update_index_oci(image_ref, tmpdir, pool)
) as tmpdir, spack.util.parallel.make_concurrent_executor() as executor:
bindist._oci_update_index(image_ref, tmpdir, executor)
return
# Otherwise, assume a normal mirror.
url = mirror.push_url
bindist.generate_package_index(url_util.join(url, bindist.build_cache_relative_path()))
with tempfile.TemporaryDirectory(dir=spack.stage.get_stage_root()) as tmpdir:
bindist._url_generate_package_index(url, tmpdir)
if update_keys:
keys_url = url_util.join(
@@ -1197,7 +776,8 @@ def update_index(mirror: spack.mirror.Mirror, update_keys=False):
)
try:
bindist.generate_key_index(keys_url)
with tempfile.TemporaryDirectory(dir=spack.stage.get_stage_root()) as tmpdir:
bindist.generate_key_index(keys_url, tmpdir)
except bindist.CannotListKeys as e:
# Do not error out if listing keys went wrong. This usually means that the _gpg path
# does not exist. TODO: distinguish between this and other errors.

View File

@@ -7,11 +7,11 @@
import copy
import os
import re
import shlex
import sys
from argparse import ArgumentParser, Namespace
from typing import IO, Any, Callable, Dict, Iterable, List, Optional, Sequence, Set, Tuple, Union
import llnl.util.filesystem as fs
import llnl.util.tty as tty
from llnl.util.argparsewriter import ArgparseRstWriter, ArgparseWriter, Command
from llnl.util.tty.colify import colify
@@ -19,6 +19,7 @@
import spack.cmd
import spack.main
import spack.paths
import spack.platforms
from spack.main import section_descriptions
description = "list available spack commands"
@@ -140,7 +141,7 @@ def usage(self, usage: str) -> str:
cmd = self.parser.prog.replace(" ", "-")
if cmd in self.documented:
string += "\n:ref:`More documentation <cmd-{0}>`\n".format(cmd)
string = f"{string}\n:ref:`More documentation <cmd-{cmd}>`\n"
return string
@@ -250,33 +251,27 @@ def body(
Function body.
"""
if positionals:
return """
return f"""
if $list_options
then
{0}
{self.optionals(optionals)}
else
{1}
{self.positionals(positionals)}
fi
""".format(
self.optionals(optionals), self.positionals(positionals)
)
"""
elif subcommands:
return """
return f"""
if $list_options
then
{0}
{self.optionals(optionals)}
else
{1}
{self.subcommands(subcommands)}
fi
""".format(
self.optionals(optionals), self.subcommands(subcommands)
)
"""
else:
return """
{0}
""".format(
self.optionals(optionals)
)
return f"""
{self.optionals(optionals)}
"""
def positionals(self, positionals: Sequence[str]) -> str:
"""Return the syntax for reporting positional arguments.
@@ -305,7 +300,7 @@ def optionals(self, optionals: Sequence[str]) -> str:
Returns:
Syntax for optional flags.
"""
return 'SPACK_COMPREPLY="{0}"'.format(" ".join(optionals))
return f'SPACK_COMPREPLY="{" ".join(optionals)}"'
def subcommands(self, subcommands: Sequence[str]) -> str:
"""Return the syntax for reporting subcommands.
@@ -316,7 +311,7 @@ def subcommands(self, subcommands: Sequence[str]) -> str:
Returns:
Syntax for subcommand parsers
"""
return 'SPACK_COMPREPLY="{0}"'.format(" ".join(subcommands))
return f'SPACK_COMPREPLY="{" ".join(subcommands)}"'
# Map argument destination names to their complete commands
@@ -396,7 +391,7 @@ def _fish_dest_get_complete(prog: str, dest: str) -> Optional[str]:
subcmd = s[1] if len(s) == 2 else ""
for (prog_key, pos_key), value in _dest_to_fish_complete.items():
if subcmd.startswith(prog_key) and re.match("^" + pos_key + "$", dest):
if subcmd.startswith(prog_key) and re.match(f"^{pos_key}$", dest):
return value
return None
@@ -428,24 +423,6 @@ def format(self, cmd: Command) -> str:
+ self.complete(cmd.prog, positionals, optionals, subcommands)
)
def _quote(self, string: str) -> str:
"""Quote string and escape special characters if necessary.
Args:
string: Input string.
Returns:
Quoted string.
"""
# Goal here is to match fish_indent behavior
# Strings without spaces (or other special characters) do not need to be escaped
if not any([sub in string for sub in [" ", "'", '"']]):
return string
string = string.replace("'", r"\'")
return f"'{string}'"
def optspecs(
self,
prog: str,
@@ -464,7 +441,7 @@ def optspecs(
optspec_var = "__fish_spack_optspecs_" + prog.replace(" ", "_").replace("-", "_")
if optionals is None:
return "set -g %s\n" % optspec_var
return f"set -g {optspec_var}\n"
# Build optspec by iterating over options
args = []
@@ -491,11 +468,11 @@ def optspecs(
long = [f[2:] for f in flags if f.startswith("--")]
while len(short) > 0 and len(long) > 0:
arg = "%s/%s%s" % (short.pop(), long.pop(), required)
arg = f"{short.pop()}/{long.pop()}{required}"
while len(short) > 0:
arg = "%s/%s" % (short.pop(), required)
arg = f"{short.pop()}/{required}"
while len(long) > 0:
arg = "%s%s" % (long.pop(), required)
arg = f"{long.pop()}{required}"
args.append(arg)
@@ -504,7 +481,7 @@ def optspecs(
# indicate that such subcommand exists.
args = " ".join(args)
return "set -g %s %s\n" % (optspec_var, args)
return f"set -g {optspec_var} {args}\n"
@staticmethod
def complete_head(
@@ -525,12 +502,14 @@ def complete_head(
subcmd = s[1] if len(s) == 2 else ""
if index is None:
return "complete -c %s -n '__fish_spack_using_command %s'" % (s[0], subcmd)
return f"complete -c {s[0]} -n '__fish_spack_using_command {subcmd}'"
elif nargs in [argparse.ZERO_OR_MORE, argparse.ONE_OR_MORE, argparse.REMAINDER]:
head = "complete -c %s -n '__fish_spack_using_command_pos_remainder %d %s'"
return (
f"complete -c {s[0]} -n '__fish_spack_using_command_pos_remainder "
f"{index} {subcmd}'"
)
else:
head = "complete -c %s -n '__fish_spack_using_command_pos %d %s'"
return head % (s[0], index, subcmd)
return f"complete -c {s[0]} -n '__fish_spack_using_command_pos {index} {subcmd}'"
def complete(
self,
@@ -598,25 +577,18 @@ def positionals(
if choices is not None:
# If there are choices, we provide a completion for all possible values.
commands.append(head + " -f -a %s" % self._quote(" ".join(choices)))
commands.append(f"{head} -f -a {shlex.quote(' '.join(choices))}")
else:
# Otherwise, we try to find a predefined completion for it
value = _fish_dest_get_complete(prog, args)
if value is not None:
commands.append(head + " " + value)
commands.append(f"{head} {value}")
return "\n".join(commands) + "\n"
def prog_comment(self, prog: str) -> str:
"""Return a comment line for the command.
Args:
prog: Program name.
Returns:
Comment line.
"""
return "\n# %s\n" % prog
"""Return a comment line for the command."""
return f"\n# {prog}\n"
def optionals(
self,
@@ -659,28 +631,28 @@ def optionals(
for f in flags:
if f.startswith("--"):
long = f[2:]
prefix += " -l %s" % long
prefix = f"{prefix} -l {long}"
elif f.startswith("-"):
short = f[1:]
assert len(short) == 1
prefix += " -s %s" % short
prefix = f"{prefix} -s {short}"
# Check if option require argument.
# Currently multi-argument options are not supported, so we treat it like one argument.
if nargs != 0:
prefix += " -r"
prefix = f"{prefix} -r"
if dest is not None:
# If there are choices, we provide a completion for all possible values.
commands.append(prefix + " -f -a %s" % self._quote(" ".join(dest)))
commands.append(f"{prefix} -f -a {shlex.quote(' '.join(dest))}")
else:
# Otherwise, we try to find a predefined completion for it
value = _fish_dest_get_complete(prog, dest)
if value is not None:
commands.append(prefix + " " + value)
commands.append(f"{prefix} {value}")
if help:
commands.append(prefix + " -d %s" % self._quote(help))
commands.append(f"{prefix} -d {shlex.quote(help)}")
return "\n".join(commands) + "\n"
@@ -698,11 +670,11 @@ def subcommands(self, prog: str, subcommands: List[Tuple[ArgumentParser, str, st
head = self.complete_head(prog, 0)
for _, subcommand, help in subcommands:
command = head + " -f -a %s" % self._quote(subcommand)
command = f"{head} -f -a {shlex.quote(subcommand)}"
if help is not None and len(help) > 0:
help = help.split("\n")[0]
command += " -d %s" % self._quote(help)
command = f"{command} -d {shlex.quote(help)}"
commands.append(command)
@@ -748,7 +720,7 @@ def rst_index(out: IO) -> None:
for i, cmd in enumerate(sorted(commands)):
description = description.capitalize() if i == 0 else ""
ref = ":ref:`%s <spack-%s>`" % (cmd, cmd)
ref = f":ref:`{cmd} <spack-{cmd}>`"
comma = "," if i != len(commands) - 1 else ""
bar = "| " if i % 8 == 0 else " "
out.write(line % (description, bar + ref + comma))
@@ -859,17 +831,14 @@ def _commands(parser: ArgumentParser, args: Namespace) -> None:
# check header first so we don't open out files unnecessarily
if args.header and not os.path.exists(args.header):
tty.die("No such file: '%s'" % args.header)
tty.die(f"No such file: '{args.header}'")
if args.update:
tty.msg("Updating file: %s" % args.update)
tty.msg(f"Updating file: {args.update}")
with open(args.update, "w") as f:
prepend_header(args, f)
formatter(args, f)
if args.update_completion:
fs.set_executable(args.update)
else:
prepend_header(args, sys.stdout)
formatter(args, sys.stdout)

View File

@@ -50,6 +50,7 @@ def setup_parser(subparser):
default=lambda: spack.config.default_modify_scope("compilers"),
help="configuration scope to modify",
)
arguments.add_common_arguments(find_parser, ["jobs"])
# Remove
remove_parser = sp.add_parser("remove", aliases=["rm"], help="remove compiler by spec")
@@ -78,25 +79,21 @@ def setup_parser(subparser):
def compiler_find(args):
"""Search either $PATH or a list of paths OR MODULES for compilers and
add them to Spack's configuration.
"""
# None signals spack.compiler.find_compilers to use its default logic
paths = args.add_paths or None
# Below scope=None because we want new compilers that don't appear
# in any other configuration.
new_compilers = spack.compilers.find_new_compilers(
paths, scope=None, mixed_toolchain=args.mixed_toolchain
new_compilers = spack.compilers.find_compilers(
path_hints=paths,
scope=args.scope,
mixed_toolchain=args.mixed_toolchain,
max_workers=args.jobs,
)
if new_compilers:
spack.compilers.add_compilers_to_config(new_compilers, scope=args.scope)
n = len(new_compilers)
s = "s" if n > 1 else ""
config = spack.config.CONFIG
filename = config.get_config_filename(args.scope, "compilers")
tty.msg("Added %d new compiler%s to %s" % (n, s, filename))
colify(reversed(sorted(c.spec.display_str for c in new_compilers)), indent=4)
filename = spack.config.CONFIG.get_config_filename(args.scope, "compilers")
tty.msg(f"Added {n:d} new compiler{s} to {filename}")
compiler_strs = sorted(f"{c.spec.name}@{c.spec.version}" for c in new_compilers)
colify(reversed(compiler_strs), indent=4)
else:
tty.msg("Found no new compilers")
tty.msg("Compilers are defined in the following files:")

View File

@@ -6,6 +6,7 @@
import re
import sys
import urllib.parse
from typing import List
import llnl.util.tty as tty
from llnl.util.filesystem import mkdirp
@@ -14,9 +15,15 @@
import spack.stage
import spack.util.web
from spack.spec import Spec
from spack.url import UndetectableNameError, UndetectableVersionError, parse_name, parse_version
from spack.url import (
UndetectableNameError,
UndetectableVersionError,
find_versions_of_archive,
parse_name,
parse_version,
)
from spack.util.editor import editor
from spack.util.executable import ProcessError, which
from spack.util.executable import which
from spack.util.format import get_version_lines
from spack.util.naming import mod_to_class, simplify_name, valid_fully_qualified_module_name
@@ -89,14 +96,20 @@ class BundlePackageTemplate:
url_def = " # There is no URL since there is no code to download."
body_def = " # There is no need for install() since there is no code."
def __init__(self, name, versions):
def __init__(self, name: str, versions, languages: List[str]):
self.name = name
self.class_name = mod_to_class(name)
self.versions = versions
self.languages = languages
def write(self, pkg_path):
"""Writes the new package file."""
all_deps = [f' depends_on("{lang}", type="build")' for lang in self.languages]
if all_deps and self.dependencies:
all_deps.append("")
all_deps.append(self.dependencies)
# Write out a template for the file
with open(pkg_path, "w") as pkg_file:
pkg_file.write(
@@ -106,7 +119,7 @@ def write(self, pkg_path):
base_class_name=self.base_class_name,
url_def=self.url_def,
versions=self.versions,
dependencies=self.dependencies,
dependencies="\n".join(all_deps),
body_def=self.body_def,
)
)
@@ -125,8 +138,8 @@ def install(self, spec, prefix):
url_line = ' url = "{url}"'
def __init__(self, name, url, versions):
super().__init__(name, versions)
def __init__(self, name, url, versions, languages: List[str]):
super().__init__(name, versions, languages)
self.url_def = self.url_line.format(url=url)
@@ -214,13 +227,13 @@ def luarocks_args(self):
args = []
return args"""
def __init__(self, name, url, *args, **kwargs):
def __init__(self, name, url, versions, languages: List[str]):
# If the user provided `--name lua-lpeg`, don't rename it lua-lua-lpeg
if not name.startswith("lua-"):
# Make it more obvious that we are renaming the package
tty.msg("Changing package name from {0} to lua-{0}".format(name))
name = "lua-{0}".format(name)
super().__init__(name, url, *args, **kwargs)
super().__init__(name, url, versions, languages)
class MesonPackageTemplate(PackageTemplate):
@@ -321,14 +334,14 @@ class RacketPackageTemplate(PackageTemplate):
# subdirectory = None
"""
def __init__(self, name, url, *args, **kwargs):
def __init__(self, name, url, versions, languages: List[str]):
# If the user provided `--name rkt-scribble`, don't rename it rkt-rkt-scribble
if not name.startswith("rkt-"):
# Make it more obvious that we are renaming the package
tty.msg("Changing package name from {0} to rkt-{0}".format(name))
name = "rkt-{0}".format(name)
self.body_def = self.body_def.format(name[4:])
super().__init__(name, url, *args, **kwargs)
super().__init__(name, url, versions, languages)
class PythonPackageTemplate(PackageTemplate):
@@ -361,7 +374,7 @@ def config_settings(self, spec, prefix):
settings = {}
return settings"""
def __init__(self, name, url, *args, **kwargs):
def __init__(self, name, url, versions, languages: List[str]):
# If the user provided `--name py-numpy`, don't rename it py-py-numpy
if not name.startswith("py-"):
# Make it more obvious that we are renaming the package
@@ -415,7 +428,7 @@ def __init__(self, name, url, *args, **kwargs):
+ self.url_line
)
super().__init__(name, url, *args, **kwargs)
super().__init__(name, url, versions, languages)
class RPackageTemplate(PackageTemplate):
@@ -434,7 +447,7 @@ def configure_args(self):
args = []
return args"""
def __init__(self, name, url, *args, **kwargs):
def __init__(self, name, url, versions, languages: List[str]):
# If the user provided `--name r-rcpp`, don't rename it r-r-rcpp
if not name.startswith("r-"):
# Make it more obvious that we are renaming the package
@@ -454,7 +467,7 @@ def __init__(self, name, url, *args, **kwargs):
if bioc:
self.url_line = ' url = "{0}"\n' ' bioc = "{1}"'.format(url, r_name)
super().__init__(name, url, *args, **kwargs)
super().__init__(name, url, versions, languages)
class PerlmakePackageTemplate(PackageTemplate):
@@ -474,14 +487,14 @@ def configure_args(self):
args = []
return args"""
def __init__(self, name, *args, **kwargs):
def __init__(self, name, url, versions, languages: List[str]):
# If the user provided `--name perl-cpp`, don't rename it perl-perl-cpp
if not name.startswith("perl-"):
# Make it more obvious that we are renaming the package
tty.msg("Changing package name from {0} to perl-{0}".format(name))
name = "perl-{0}".format(name)
super().__init__(name, *args, **kwargs)
super().__init__(name, url, versions, languages)
class PerlbuildPackageTemplate(PerlmakePackageTemplate):
@@ -506,7 +519,7 @@ class OctavePackageTemplate(PackageTemplate):
# FIXME: Add additional dependencies if required.
# depends_on("octave-foo", type=("build", "run"))"""
def __init__(self, name, *args, **kwargs):
def __init__(self, name, url, versions, languages: List[str]):
# If the user provided `--name octave-splines`, don't rename it
# octave-octave-splines
if not name.startswith("octave-"):
@@ -514,7 +527,7 @@ def __init__(self, name, *args, **kwargs):
tty.msg("Changing package name from {0} to octave-{0}".format(name))
name = "octave-{0}".format(name)
super().__init__(name, *args, **kwargs)
super().__init__(name, url, versions, languages)
class RubyPackageTemplate(PackageTemplate):
@@ -534,7 +547,7 @@ def build(self, spec, prefix):
# FIXME: If not needed delete this function
pass"""
def __init__(self, name, *args, **kwargs):
def __init__(self, name, url, versions, languages: List[str]):
# If the user provided `--name ruby-numpy`, don't rename it
# ruby-ruby-numpy
if not name.startswith("ruby-"):
@@ -542,7 +555,7 @@ def __init__(self, name, *args, **kwargs):
tty.msg("Changing package name from {0} to ruby-{0}".format(name))
name = "ruby-{0}".format(name)
super().__init__(name, *args, **kwargs)
super().__init__(name, url, versions, languages)
class MakefilePackageTemplate(PackageTemplate):
@@ -580,14 +593,14 @@ def configure_args(self, spec, prefix):
args = []
return args"""
def __init__(self, name, *args, **kwargs):
def __init__(self, name, url, versions, languages: List[str]):
# If the user provided `--name py-pyqt4`, don't rename it py-py-pyqt4
if not name.startswith("py-"):
# Make it more obvious that we are renaming the package
tty.msg("Changing package name from {0} to py-{0}".format(name))
name = "py-{0}".format(name)
super().__init__(name, *args, **kwargs)
super().__init__(name, url, versions, languages)
templates = {
@@ -658,8 +671,48 @@ def setup_parser(subparser):
)
class BuildSystemGuesser:
"""An instance of BuildSystemGuesser provides a callable object to be used
#: C file extensions
C_EXT = {".c"}
#: C++ file extensions
CXX_EXT = {
".C",
".c++",
".cc",
".ccm",
".cpp",
".CPP",
".cxx",
".h++",
".hh",
".hpp",
".hxx",
".inl",
".ipp",
".ixx",
".tcc",
".tpp",
}
#: Fortran file extensions
FORTRAN_EXT = {
".f77",
".F77",
".f90",
".F90",
".f95",
".F95",
".f",
".F",
".for",
".FOR",
".ftn",
".FTN",
}
class BuildSystemAndLanguageGuesser:
"""An instance of BuildSystemAndLanguageGuesser provides a callable object to be used
during ``spack create``. By passing this object to ``spack checksum``, we
can take a peek at the fetched tarball and discern the build system it uses
"""
@@ -667,81 +720,119 @@ class BuildSystemGuesser:
def __init__(self):
"""Sets the default build system."""
self.build_system = "generic"
self._c = False
self._cxx = False
self._fortran = False
def __call__(self, stage, url):
# List of files in the archive ordered by their depth in the directory tree.
self._file_entries: List[str] = []
def __call__(self, archive: str, url: str) -> None:
"""Try to guess the type of build system used by a project based on
the contents of its archive or the URL it was downloaded from."""
if url is not None:
# Most octave extensions are hosted on Octave-Forge:
# https://octave.sourceforge.net/index.html
# They all have the same base URL.
if "downloads.sourceforge.net/octave/" in url:
self.build_system = "octave"
return
if url.endswith(".gem"):
self.build_system = "ruby"
return
if url.endswith(".whl") or ".whl#" in url:
self.build_system = "python"
return
if url.endswith(".rock"):
self.build_system = "lua"
return
# A list of clues that give us an idea of the build system a package
# uses. If the regular expression matches a file contained in the
# archive, the corresponding build system is assumed.
# NOTE: Order is important here. If a package supports multiple
# build systems, we choose the first match in this list.
clues = [
(r"/CMakeLists\.txt$", "cmake"),
(r"/NAMESPACE$", "r"),
(r"/Cargo\.toml$", "cargo"),
(r"/go\.mod$", "go"),
(r"/configure$", "autotools"),
(r"/configure\.(in|ac)$", "autoreconf"),
(r"/Makefile\.am$", "autoreconf"),
(r"/pom\.xml$", "maven"),
(r"/SConstruct$", "scons"),
(r"/waf$", "waf"),
(r"/pyproject.toml", "python"),
(r"/setup\.(py|cfg)$", "python"),
(r"/WORKSPACE$", "bazel"),
(r"/Build\.PL$", "perlbuild"),
(r"/Makefile\.PL$", "perlmake"),
(r"/.*\.gemspec$", "ruby"),
(r"/Rakefile$", "ruby"),
(r"/setup\.rb$", "ruby"),
(r"/.*\.pro$", "qmake"),
(r"/.*\.rockspec$", "lua"),
(r"/(GNU)?[Mm]akefile$", "makefile"),
(r"/DESCRIPTION$", "octave"),
(r"/meson\.build$", "meson"),
(r"/configure\.py$", "sip"),
]
# Peek inside the compressed file.
if stage.archive_file.endswith(".zip") or ".zip#" in stage.archive_file:
if archive.endswith(".zip") or ".zip#" in archive:
try:
unzip = which("unzip")
output = unzip("-lq", stage.archive_file, output=str)
except ProcessError:
assert unzip is not None
output = unzip("-lq", archive, output=str)
except Exception:
output = ""
else:
try:
tar = which("tar")
output = tar("--exclude=*/*/*", "-tf", stage.archive_file, output=str)
except ProcessError:
assert tar is not None
output = tar("tf", archive, output=str)
except Exception:
output = ""
lines = output.splitlines()
self._file_entries[:] = output.splitlines()
# Determine the build system based on the files contained
# in the archive.
for pattern, bs in clues:
if any(re.search(pattern, line) for line in lines):
self.build_system = bs
break
# Files closest to the root should be considered first when determining build system.
self._file_entries.sort(key=lambda p: p.count("/"))
self._determine_build_system(url)
self._determine_language()
def _determine_build_system(self, url: str) -> None:
# Most octave extensions are hosted on Octave-Forge:
# https://octave.sourceforge.net/index.html
# They all have the same base URL.
if "downloads.sourceforge.net/octave/" in url:
self.build_system = "octave"
elif url.endswith(".gem"):
self.build_system = "ruby"
elif url.endswith(".whl") or ".whl#" in url:
self.build_system = "python"
elif url.endswith(".rock"):
self.build_system = "lua"
elif self._file_entries:
# A list of clues that give us an idea of the build system a package
# uses. If the regular expression matches a file contained in the
# archive, the corresponding build system is assumed.
# NOTE: Order is important here. If a package supports multiple
# build systems, we choose the first match in this list.
clues = [
(re.compile(pattern), build_system)
for pattern, build_system in (
(r"/CMakeLists\.txt$", "cmake"),
(r"/NAMESPACE$", "r"),
(r"/Cargo\.toml$", "cargo"),
(r"/go\.mod$", "go"),
(r"/configure$", "autotools"),
(r"/configure\.(in|ac)$", "autoreconf"),
(r"/Makefile\.am$", "autoreconf"),
(r"/pom\.xml$", "maven"),
(r"/SConstruct$", "scons"),
(r"/waf$", "waf"),
(r"/pyproject.toml", "python"),
(r"/setup\.(py|cfg)$", "python"),
(r"/WORKSPACE$", "bazel"),
(r"/Build\.PL$", "perlbuild"),
(r"/Makefile\.PL$", "perlmake"),
(r"/.*\.gemspec$", "ruby"),
(r"/Rakefile$", "ruby"),
(r"/setup\.rb$", "ruby"),
(r"/.*\.pro$", "qmake"),
(r"/.*\.rockspec$", "lua"),
(r"/(GNU)?[Mm]akefile$", "makefile"),
(r"/DESCRIPTION$", "octave"),
(r"/meson\.build$", "meson"),
(r"/configure\.py$", "sip"),
)
]
# Determine the build system based on the files contained in the archive.
for file in self._file_entries:
for pattern, build_system in clues:
if pattern.search(file):
self.build_system = build_system
return
def _determine_language(self):
for entry in self._file_entries:
_, ext = os.path.splitext(entry)
if not self._c and ext in C_EXT:
self._c = True
elif not self._cxx and ext in CXX_EXT:
self._cxx = True
elif not self._fortran and ext in FORTRAN_EXT:
self._fortran = True
if self._c and self._cxx and self._fortran:
return
@property
def languages(self) -> List[str]:
langs: List[str] = []
if self._c:
langs.append("c")
if self._cxx:
langs.append("cxx")
if self._fortran:
langs.append("fortran")
return langs
def get_name(name, url):
@@ -811,7 +902,7 @@ def get_url(url):
def get_versions(args, name):
"""Returns a list of versions and hashes for a package.
Also returns a BuildSystemGuesser object.
Also returns a BuildSystemAndLanguageGuesser object.
Returns default values if no URL is provided.
@@ -820,7 +911,7 @@ def get_versions(args, name):
name (str): The name of the package
Returns:
tuple: versions and hashes, and a BuildSystemGuesser object
tuple: versions and hashes, and a BuildSystemAndLanguageGuesser object
"""
# Default version with hash
@@ -834,7 +925,7 @@ def get_versions(args, name):
# version("1.2.4")"""
# Default guesser
guesser = BuildSystemGuesser()
guesser = BuildSystemAndLanguageGuesser()
valid_url = True
try:
@@ -847,7 +938,7 @@ def get_versions(args, name):
if args.url is not None and args.template != "bundle" and valid_url:
# Find available versions
try:
url_dict = spack.url.find_versions_of_archive(args.url)
url_dict = find_versions_of_archive(args.url)
if len(url_dict) > 1 and not args.batch and sys.stdin.isatty():
url_dict_filtered = spack.stage.interactive_version_filter(url_dict)
if url_dict_filtered is None:
@@ -874,7 +965,7 @@ def get_versions(args, name):
return versions, guesser
def get_build_system(template, url, guesser):
def get_build_system(template: str, url: str, guesser: BuildSystemAndLanguageGuesser) -> str:
"""Determine the build system template.
If a template is specified, always use that. Otherwise, if a URL
@@ -882,11 +973,10 @@ def get_build_system(template, url, guesser):
build system it uses. Otherwise, use a generic template by default.
Args:
template (str): ``--template`` argument given to ``spack create``
url (str): ``url`` argument given to ``spack create``
args (argparse.Namespace): The arguments given to ``spack create``
guesser (BuildSystemGuesser): The first_stage_function given to
``spack checksum`` which records the build system it detects
template: ``--template`` argument given to ``spack create``
url: ``url`` argument given to ``spack create``
guesser: The first_stage_function given to ``spack checksum`` which records the build
system it detects
Returns:
str: The name of the build system template to use
@@ -960,7 +1050,7 @@ def create(parser, args):
build_system = get_build_system(args.template, url, guesser)
# Create the package template object
constr_args = {"name": name, "versions": versions}
constr_args = {"name": name, "versions": versions, "languages": guesser.languages}
package_class = templates[build_system]
if package_class != BundlePackageTemplate:
constr_args["url"] = url

View File

@@ -6,6 +6,7 @@
import os
import platform
import re
import sys
from datetime import datetime
from glob import glob
@@ -62,9 +63,10 @@ def create_db_tarball(args):
base = os.path.basename(str(spack.store.STORE.root))
transform_args = []
# Currently --transform and -s are not supported by Windows native tar
if "GNU" in tar("--version", output=str):
transform_args = ["--transform", "s/^%s/%s/" % (base, tarball_name)]
else:
elif sys.platform != "win32":
transform_args = ["-s", "/^%s/%s/" % (base, tarball_name)]
wd = os.path.dirname(str(spack.store.STORE.root))
@@ -90,7 +92,6 @@ def report(args):
print("* **Spack:**", get_version())
print("* **Python:**", platform.python_version())
print("* **Platform:**", architecture)
print("* **Concretizer:**", spack.config.get("config:concretizer"))
def debug(parser, args):

View File

@@ -47,16 +47,6 @@ def inverted_dependencies():
dependents of, e.g., `mpi`, but virtuals are not included as
actual dependents.
"""
dag = {}
for pkg_cls in spack.repo.PATH.all_package_classes():
dag.setdefault(pkg_cls.name, set())
for dep in pkg_cls.dependencies_by_name():
deps = [dep]
# expand virtuals if necessary
if spack.repo.PATH.is_virtual(dep):
deps += [s.name for s in spack.repo.PATH.providers_for(dep)]
dag = collections.defaultdict(set)
for pkg_cls in spack.repo.PATH.all_package_classes():
for _, deps_by_name in pkg_cls.dependencies.items():

View File

@@ -14,7 +14,6 @@
installation and its deprecator.
"""
import argparse
import os
import llnl.util.tty as tty
from llnl.util.symlink import symlink
@@ -76,12 +75,7 @@ def setup_parser(sp):
)
sp.add_argument(
"-l",
"--link-type",
type=str,
default="soft",
choices=["soft", "hard"],
help="type of filesystem link to use for deprecation (default soft)",
"-l", "--link-type", type=str, default=None, choices=["soft", "hard"], help="(deprecated)"
)
sp.add_argument(
@@ -91,6 +85,9 @@ def setup_parser(sp):
def deprecate(parser, args):
"""Deprecate one spec in favor of another"""
if args.link_type is not None:
tty.warn("The --link-type option is deprecated and will be removed in a future release.")
env = ev.active_environment()
specs = spack.cmd.parse_specs(args.specs)
@@ -144,7 +141,5 @@ def deprecate(parser, args):
if not answer:
tty.die("Will not deprecate any packages.")
link_fn = os.link if args.link_type == "hard" else symlink
for dcate, dcator in zip(all_deprecate, all_deprecators):
dcate.package.do_deprecate(dcator, link_fn)
dcate.package.do_deprecate(dcator, symlink)

View File

@@ -10,8 +10,10 @@
import spack.cmd
import spack.config
import spack.fetch_strategy
import spack.package_base
import spack.repo
import spack.spec
import spack.stage
import spack.util.path
import spack.version
from spack.cmd.common import arguments
@@ -62,7 +64,7 @@ def change_fn(section):
spack.config.change_or_add("develop", find_fn, change_fn)
def _retrieve_develop_source(spec, abspath):
def _retrieve_develop_source(spec: spack.spec.Spec, abspath: str) -> None:
# "steal" the source code via staging API. We ask for a stage
# to be created, then copy it afterwards somewhere else. It would be
# better if we can create the `source_path` directly into its final
@@ -71,13 +73,13 @@ def _retrieve_develop_source(spec, abspath):
# We construct a package class ourselves, rather than asking for
# Spec.package, since Spec only allows this when it is concrete
package = pkg_cls(spec)
source_stage = package.stage[0]
source_stage: spack.stage.Stage = package.stage[0]
if isinstance(source_stage.fetcher, spack.fetch_strategy.GitFetchStrategy):
source_stage.fetcher.get_full_repo = True
# If we retrieved this version before and cached it, we may have
# done so without cloning the full git repo; likewise, any
# mirror might store an instance with truncated history.
source_stage.disable_mirrors()
source_stage.default_fetcher_only = True
source_stage.fetcher.set_package(package)
package.stage.steal_source(abspath)

View File

@@ -468,32 +468,30 @@ def env_remove(args):
This removes an environment managed by Spack. Directory environments
and manifests embedded in repositories should be removed manually.
"""
read_envs = []
remove_envs = []
valid_envs = []
bad_envs = []
invalid_envs = []
for env_name in ev.all_environment_names():
try:
env = ev.read(env_name)
valid_envs.append(env_name)
valid_envs.append(env)
if env_name in args.rm_env:
read_envs.append(env)
remove_envs.append(env)
except (spack.config.ConfigFormatError, ev.SpackEnvironmentConfigError):
invalid_envs.append(env_name)
if env_name in args.rm_env:
bad_envs.append(env_name)
# Check if env is linked to another before trying to remove
for name in valid_envs:
# Check if remove_env is included from another env before trying to remove
for env in valid_envs:
for remove_env in remove_envs:
# don't check if environment is included to itself
if name == env_name:
if env.name == remove_env.name:
continue
environ = ev.Environment(ev.root(name))
if ev.root(env_name) in environ.included_concrete_envs:
msg = f'Environment "{env_name}" is being used by environment "{name}"'
if remove_env.path in env.included_concrete_envs:
msg = f'Environment "{remove_env.name}" is being used by environment "{env.name}"'
if args.force:
tty.warn(msg)
else:
@@ -506,7 +504,7 @@ def env_remove(args):
if not answer:
tty.die("Will not remove any environments")
for env in read_envs:
for env in remove_envs:
name = env.name
if env.active:
tty.die(f"Environment {name} can't be removed while activated.")

View File

@@ -5,10 +5,12 @@
import argparse
import os
import tempfile
import spack.binary_distribution
import spack.mirror
import spack.paths
import spack.stage
import spack.util.gpg
import spack.util.url
from spack.cmd.common import arguments
@@ -115,6 +117,7 @@ def setup_parser(subparser):
help="URL of the mirror where keys will be published",
)
publish.add_argument(
"--update-index",
"--rebuild-index",
action="store_true",
default=False,
@@ -220,9 +223,10 @@ def gpg_publish(args):
elif args.mirror_url:
mirror = spack.mirror.Mirror(args.mirror_url, args.mirror_url)
spack.binary_distribution.push_keys(
mirror, keys=args.keys, regenerate_index=args.rebuild_index
)
with tempfile.TemporaryDirectory(dir=spack.stage.get_stage_root()) as tmpdir:
spack.binary_distribution._url_push_keys(
mirror, keys=args.keys, tmpdir=tmpdir, update_index=args.update_index
)
def gpg(parser, args):

View File

@@ -502,7 +502,7 @@ def print_licenses(pkg, args):
def info(parser, args):
spec = spack.spec.Spec(args.package)
pkg_cls = spack.repo.PATH.get_pkg_class(spec.name)
pkg_cls = spack.repo.PATH.get_pkg_class(spec.fullname)
pkg = pkg_cls(spec)
# Output core package information

View File

@@ -169,7 +169,9 @@ def pkg_hash(args):
def get_grep(required=False):
"""Get a grep command to use with ``spack pkg grep``."""
return exe.which(os.environ.get("SPACK_GREP") or "grep", required=required)
grep = exe.which(os.environ.get("SPACK_GREP") or "grep", required=required)
grep.ignore_quotes = True # allow `spack pkg grep '"quoted string"'` without warning
return grep
def pkg_grep(args, unknown_args):

View File

@@ -339,7 +339,7 @@ def add(self, pkg_name, fetcher):
for pkg_cls in spack.repo.PATH.all_package_classes():
npkgs += 1
for v in pkg_cls.versions:
for v in list(pkg_cls.versions):
try:
pkg = pkg_cls(spack.spec.Spec(pkg_cls.name))
fetcher = fs.for_package_version(pkg, v)

View File

@@ -23,11 +23,6 @@ def setup_parser(subparser):
output.add_argument(
"-s", "--safe", action="store_true", help="only list safe versions of the package"
)
output.add_argument(
"--safe-only",
action="store_true",
help="[deprecated] only list safe versions of the package",
)
output.add_argument(
"-r", "--remote", action="store_true", help="only list remote versions of the package"
)
@@ -47,17 +42,13 @@ def versions(parser, args):
safe_versions = pkg.versions
if args.safe_only:
tty.warn('"--safe-only" is deprecated. Use "--safe" instead.')
args.safe = args.safe_only
if not (args.remote or args.new):
if sys.stdout.isatty():
tty.msg("Safe versions (already checksummed):")
if not safe_versions:
if sys.stdout.isatty():
tty.warn("Found no versions for {0}".format(pkg.name))
tty.warn(f"Found no versions for {pkg.name}")
tty.debug("Manually add versions to the package.")
else:
colify(sorted(safe_versions, reverse=True), indent=2)
@@ -83,12 +74,12 @@ def versions(parser, args):
if not remote_versions:
if sys.stdout.isatty():
if not fetched_versions:
tty.warn("Found no versions for {0}".format(pkg.name))
tty.warn(f"Found no versions for {pkg.name}")
tty.debug(
"Check the list_url and list_depth attributes of "
"the package to help Spack find versions."
)
else:
tty.warn("Found no unchecksummed versions for {0}".format(pkg.name))
tty.warn(f"Found no unchecksummed versions for {pkg.name}")
else:
colify(sorted(remote_versions, reverse=True), indent=2)

View File

@@ -29,6 +29,9 @@
__all__ = ["Compiler"]
PATH_INSTANCE_VARS = ["cc", "cxx", "f77", "fc"]
FLAG_INSTANCE_VARS = ["cflags", "cppflags", "cxxflags", "fflags"]
@llnl.util.lang.memoized
def _get_compiler_version_output(compiler_path, version_arg, ignore_errors=()):
@@ -278,11 +281,6 @@ def debug_flags(self):
def opt_flags(self):
return ["-O", "-O0", "-O1", "-O2", "-O3"]
# Cray PrgEnv name that can be used to load this compiler
PrgEnv: Optional[str] = None
# Name of module used to switch versions of this compiler
PrgEnv_compiler: Optional[str] = None
def __init__(
self,
cspec,
@@ -705,6 +703,30 @@ def compiler_environment(self):
os.environ.clear()
os.environ.update(backup_env)
def to_dict(self):
flags_dict = {fname: " ".join(fvals) for fname, fvals in self.flags.items()}
flags_dict.update(
{attr: getattr(self, attr, None) for attr in FLAG_INSTANCE_VARS if hasattr(self, attr)}
)
result = {
"spec": str(self.spec),
"paths": {attr: getattr(self, attr, None) for attr in PATH_INSTANCE_VARS},
"flags": flags_dict,
"operating_system": str(self.operating_system),
"target": str(self.target),
"modules": self.modules or [],
"environment": self.environment or {},
"extra_rpaths": self.extra_rpaths or [],
}
if self.enable_implicit_rpaths is not None:
result["implicit_rpaths"] = self.enable_implicit_rpaths
if self.alias:
result["alias"] = self.alias
return result
class CompilerAccessError(spack.error.SpackError):
def __init__(self, compiler, paths):

View File

@@ -6,12 +6,11 @@
"""This module contains functions related to finding compilers on the
system and configuring Spack to use multiple compilers.
"""
import collections
import itertools
import multiprocessing.pool
import importlib
import os
import sys
import warnings
from typing import Dict, List, Optional, Tuple
from typing import Dict, List, Optional
import archspec.cpu
@@ -22,16 +21,15 @@
import spack.compiler
import spack.config
import spack.error
import spack.operating_systems
import spack.paths
import spack.platforms
import spack.repo
import spack.spec
import spack.version
from spack.operating_systems import windows_os
from spack.util.environment import get_path
from spack.util.naming import mod_to_class
_path_instance_vars = ["cc", "cxx", "f77", "fc"]
_flags_instance_vars = ["cflags", "cppflags", "cxxflags", "fflags"]
_other_instance_vars = [
"modules",
"operating_system",
@@ -63,6 +61,10 @@
}
#: Tag used to identify packages providing a compiler
COMPILER_TAG = "compiler"
def pkg_spec_for_compiler(cspec):
"""Return the spec of the package that provides the compiler."""
for spec, package in _compiler_to_pkg.items():
@@ -85,29 +87,7 @@ def converter(cspec_like, *args, **kwargs):
def _to_dict(compiler):
"""Return a dict version of compiler suitable to insert in YAML."""
d = {}
d["spec"] = str(compiler.spec)
d["paths"] = dict((attr, getattr(compiler, attr, None)) for attr in _path_instance_vars)
d["flags"] = dict((fname, " ".join(fvals)) for fname, fvals in compiler.flags.items())
d["flags"].update(
dict(
(attr, getattr(compiler, attr, None))
for attr in _flags_instance_vars
if hasattr(compiler, attr)
)
)
d["operating_system"] = str(compiler.operating_system)
d["target"] = str(compiler.target)
d["modules"] = compiler.modules or []
d["environment"] = compiler.environment or {}
d["extra_rpaths"] = compiler.extra_rpaths or []
if compiler.enable_implicit_rpaths is not None:
d["implicit_rpaths"] = compiler.enable_implicit_rpaths
if compiler.alias:
d["alias"] = compiler.alias
return {"compiler": d}
return {"compiler": compiler.to_dict()}
def get_compiler_config(
@@ -127,7 +107,7 @@ def get_compiler_config(
# Do not init config because there is a non-empty scope
return config
_init_compiler_config(configuration, scope=scope)
find_compilers(scope=scope)
config = configuration.get("compilers", scope=scope)
return config
@@ -136,125 +116,8 @@ def get_compiler_config_from_packages(
configuration: "spack.config.Configuration", *, scope: Optional[str] = None
) -> List[Dict]:
"""Return the compiler configuration from packages.yaml"""
config = configuration.get("packages", scope=scope)
if not config:
return []
packages = []
compiler_package_names = supported_compilers() + list(package_name_to_compiler_name.keys())
for name, entry in config.items():
if name not in compiler_package_names:
continue
externals_config = entry.get("externals", None)
if not externals_config:
continue
packages.extend(_compiler_config_from_package_config(externals_config))
return packages
def _compiler_config_from_package_config(config):
compilers = []
for entry in config:
compiler = _compiler_config_from_external(entry)
if compiler:
compilers.append(compiler)
return compilers
def _compiler_config_from_external(config):
extra_attributes_key = "extra_attributes"
compilers_key = "compilers"
c_key, cxx_key, fortran_key = "c", "cxx", "fortran"
# Allow `@x.y.z` instead of `@=x.y.z`
spec = spack.spec.parse_with_version_concrete(config["spec"])
compiler_spec = spack.spec.CompilerSpec(
package_name_to_compiler_name.get(spec.name, spec.name), spec.version
)
err_header = f"The external spec '{spec}' cannot be used as a compiler"
# If extra_attributes is not there I might not want to use this entry as a compiler,
# therefore just leave a debug message, but don't be loud with a warning.
if extra_attributes_key not in config:
tty.debug(f"[{__file__}] {err_header}: missing the '{extra_attributes_key}' key")
return None
extra_attributes = config[extra_attributes_key]
# If I have 'extra_attributes' warn if 'compilers' is missing, or we don't have a C compiler
if compilers_key not in extra_attributes:
warnings.warn(
f"{err_header}: missing the '{compilers_key}' key under '{extra_attributes_key}'"
)
return None
attribute_compilers = extra_attributes[compilers_key]
if c_key not in attribute_compilers:
warnings.warn(
f"{err_header}: missing the C compiler path under "
f"'{extra_attributes_key}:{compilers_key}'"
)
return None
c_compiler = attribute_compilers[c_key]
# C++ and Fortran compilers are not mandatory, so let's just leave a debug trace
if cxx_key not in attribute_compilers:
tty.debug(f"[{__file__}] The external spec {spec} does not have a C++ compiler")
if fortran_key not in attribute_compilers:
tty.debug(f"[{__file__}] The external spec {spec} does not have a Fortran compiler")
# compilers format has cc/fc/f77, externals format has "c/fortran"
paths = {
"cc": c_compiler,
"cxx": attribute_compilers.get(cxx_key, None),
"fc": attribute_compilers.get(fortran_key, None),
"f77": attribute_compilers.get(fortran_key, None),
}
if not spec.architecture:
host_platform = spack.platforms.host()
operating_system = host_platform.operating_system("default_os")
target = host_platform.target("default_target").microarchitecture
else:
target = spec.architecture.target
if not target:
target = spack.platforms.host().target("default_target")
target = target.microarchitecture
operating_system = spec.os
if not operating_system:
host_platform = spack.platforms.host()
operating_system = host_platform.operating_system("default_os")
compiler_entry = {
"compiler": {
"spec": str(compiler_spec),
"paths": paths,
"flags": extra_attributes.get("flags", {}),
"operating_system": str(operating_system),
"target": str(target.family),
"modules": config.get("modules", []),
"environment": extra_attributes.get("environment", {}),
"extra_rpaths": extra_attributes.get("extra_rpaths", []),
"implicit_rpaths": extra_attributes.get("implicit_rpaths", None),
}
}
return compiler_entry
def _init_compiler_config(
configuration: "spack.config.Configuration", *, scope: Optional[str]
) -> None:
"""Compiler search used when Spack has no compilers."""
compilers = find_compilers()
compilers_dict = []
for compiler in compilers:
compilers_dict.append(_to_dict(compiler))
configuration.set("compilers", compilers_dict, scope=scope)
packages_yaml = configuration.get("packages", scope=scope)
return CompilerConfigFactory.from_packages_yaml(packages_yaml)
def compiler_config_files():
@@ -278,9 +141,7 @@ def add_compilers_to_config(compilers, scope=None):
compilers: a list of Compiler objects.
scope: configuration scope to modify.
"""
compiler_config = get_compiler_config(
configuration=spack.config.CONFIG, scope=scope, init_config=False
)
compiler_config = get_compiler_config(configuration=spack.config.CONFIG, scope=scope)
for compiler in compilers:
if not compiler.cc:
tty.debug(f"{compiler.spec} does not have a C compiler")
@@ -329,9 +190,7 @@ def _remove_compiler_from_scope(compiler_spec, scope):
True if one or more compiler entries were actually removed, False otherwise
"""
assert scope is not None, "a specific scope is needed when calling this function"
compiler_config = get_compiler_config(
configuration=spack.config.CONFIG, scope=scope, init_config=False
)
compiler_config = get_compiler_config(configuration=spack.config.CONFIG, scope=scope)
filtered_compiler_config = [
compiler_entry
for compiler_entry in compiler_config
@@ -380,79 +239,77 @@ def all_compiler_specs(scope=None, init_config=True):
def find_compilers(
path_hints: Optional[List[str]] = None, *, mixed_toolchain=False
path_hints: Optional[List[str]] = None,
*,
scope: Optional[str] = None,
mixed_toolchain: bool = False,
max_workers: Optional[int] = None,
) -> List["spack.compiler.Compiler"]:
"""Return the list of compilers found in the paths given as arguments.
"""Searches for compiler in the paths given as argument. If any new compiler is found, the
configuration is updated, and the list of new compiler objects is returned.
Args:
path_hints: list of path hints where to look for. A sensible default based on the ``PATH``
environment variable will be used if the value is None
scope: configuration scope to modify
mixed_toolchain: allow mixing compilers from different toolchains if otherwise missing for
a certain language
max_workers: number of processes used to search for compilers
"""
import spack.detection
known_compilers = set(all_compilers(init_config=False))
if path_hints is None:
path_hints = get_path("PATH")
default_paths = fs.search_paths_for_executables(*path_hints)
if sys.platform == "win32":
default_paths.extend(windows_os.WindowsOs().compiler_search_paths)
compiler_pkgs = spack.repo.PATH.packages_with_tags(COMPILER_TAG, full=True)
# To detect the version of the compilers, we dispatch a certain number
# of function calls to different workers. Here we construct the list
# of arguments for each call.
arguments = []
for o in all_os_classes():
search_paths = getattr(o, "compiler_search_paths", default_paths)
arguments.extend(arguments_to_detect_version_fn(o, search_paths))
# Here we map the function arguments to the corresponding calls
tp = multiprocessing.pool.ThreadPool()
try:
detected_versions = tp.map(detect_version, arguments)
finally:
tp.close()
def valid_version(item: Tuple[Optional[DetectVersionArgs], Optional[str]]) -> bool:
value, error = item
if error is None:
return True
try:
# This will fail on Python 2.6 if a non ascii
# character is in the error
tty.debug(error)
except UnicodeEncodeError:
pass
return False
def remove_errors(
item: Tuple[Optional[DetectVersionArgs], Optional[str]]
) -> DetectVersionArgs:
value, _ = item
assert value is not None
return value
return make_compiler_list(
[remove_errors(detected) for detected in detected_versions if valid_version(detected)],
mixed_toolchain=mixed_toolchain,
detected_packages = spack.detection.by_path(
compiler_pkgs, path_hints=default_paths, max_workers=max_workers
)
valid_compilers = {}
for name, detected in detected_packages.items():
compilers = [x for x in detected if CompilerConfigFactory.from_external_spec(x)]
if not compilers:
continue
valid_compilers[name] = compilers
def find_new_compilers(
path_hints: Optional[List[str]] = None,
scope: Optional[str] = None,
*,
mixed_toolchain: bool = False,
):
"""Same as ``find_compilers`` but return only the compilers that are not
already in compilers.yaml.
def _has_fortran_compilers(x):
if "compilers" not in x.extra_attributes:
return False
Args:
path_hints: list of path hints where to look for. A sensible default based on the ``PATH``
environment variable will be used if the value is None
scope: scope to look for a compiler. If None consider the merged configuration.
mixed_toolchain: allow mixing compilers from different toolchains if otherwise missing for
a certain language
"""
compilers = find_compilers(path_hints, mixed_toolchain=mixed_toolchain)
return "fortran" in x.extra_attributes["compilers"]
return select_new_compilers(compilers, scope)
if mixed_toolchain:
gccs = [x for x in valid_compilers.get("gcc", []) if _has_fortran_compilers(x)]
if gccs:
best_gcc = sorted(
gccs, key=lambda x: spack.spec.parse_with_version_concrete(x).version
)[-1]
gfortran = best_gcc.extra_attributes["compilers"]["fortran"]
for name in ("llvm", "apple-clang"):
if name not in valid_compilers:
continue
candidates = valid_compilers[name]
for candidate in candidates:
if _has_fortran_compilers(candidate):
continue
candidate.extra_attributes["compilers"]["fortran"] = gfortran
new_compilers = []
for name, detected in valid_compilers.items():
for config in CompilerConfigFactory.from_specs(detected):
c = _compiler_from_config_entry(config["compiler"])
if c in known_compilers:
continue
new_compilers.append(c)
add_compilers_to_config(new_compilers, scope=scope)
return new_compilers
def select_new_compilers(compilers, scope=None):
@@ -462,7 +319,9 @@ def select_new_compilers(compilers, scope=None):
compilers_not_in_config = []
for c in compilers:
arch_spec = spack.spec.ArchSpec((None, c.operating_system, c.target))
same_specs = compilers_for_spec(c.spec, arch_spec, scope=scope, init_config=False)
same_specs = compilers_for_spec(
c.spec, arch_spec=arch_spec, scope=scope, init_config=False
)
if not same_specs:
compilers_not_in_config.append(c)
@@ -510,8 +369,9 @@ def replace_apple_clang(name):
return [replace_apple_clang(name) for name in all_compiler_module_names()]
@llnl.util.lang.memoized
def all_compiler_module_names() -> List[str]:
return [name for name in llnl.util.lang.list_modules(spack.paths.compilers_path)]
return list(llnl.util.lang.list_modules(spack.paths.compilers_path))
@_auto_compiler_spec
@@ -531,7 +391,12 @@ def find(compiler_spec, scope=None, init_config=True):
def find_specs_by_arch(compiler_spec, arch_spec, scope=None, init_config=True):
"""Return specs of available compilers that match the supplied
compiler spec. Return an empty list if nothing found."""
return [c.spec for c in compilers_for_spec(compiler_spec, arch_spec, scope, True, init_config)]
return [
c.spec
for c in compilers_for_spec(
compiler_spec, arch_spec=arch_spec, scope=scope, init_config=init_config
)
]
def all_compilers(scope=None, init_config=True):
@@ -553,14 +418,11 @@ def all_compilers_from(configuration, scope=None, init_config=True):
@_auto_compiler_spec
def compilers_for_spec(
compiler_spec, arch_spec=None, scope=None, use_cache=True, init_config=True
):
def compilers_for_spec(compiler_spec, *, arch_spec=None, scope=None, init_config=True):
"""This gets all compilers that satisfy the supplied CompilerSpec.
Returns an empty list if none are found.
"""
config = all_compilers_config(spack.config.CONFIG, scope=scope, init_config=init_config)
matches = set(find(compiler_spec, scope, init_config))
compilers = []
for cspec in matches:
@@ -569,7 +431,7 @@ def compilers_for_spec(
def compilers_for_arch(arch_spec, scope=None):
config = all_compilers_config(spack.config.CONFIG, scope=scope)
config = all_compilers_config(spack.config.CONFIG, scope=scope, init_config=False)
return list(get_compilers(config, arch_spec=arch_spec))
@@ -601,13 +463,15 @@ def compiler_from_dict(items):
os = items.get("operating_system", None)
target = items.get("target", None)
if not ("paths" in items and all(n in items["paths"] for n in _path_instance_vars)):
if not (
"paths" in items and all(n in items["paths"] for n in spack.compiler.PATH_INSTANCE_VARS)
):
raise InvalidCompilerConfigurationError(cspec)
cls = class_for_compiler_name(cspec.name)
compiler_paths = []
for c in _path_instance_vars:
for c in spack.compiler.PATH_INSTANCE_VARS:
compiler_path = items["paths"][c]
if compiler_path != "None":
compiler_paths.append(compiler_path)
@@ -735,24 +599,6 @@ def compiler_for_spec(compiler_spec, arch_spec):
return compilers[0]
@_auto_compiler_spec
def get_compiler_duplicates(compiler_spec, arch_spec):
config = spack.config.CONFIG
scope_to_compilers = {}
for scope in config.scopes:
compilers = compilers_for_spec(compiler_spec, arch_spec=arch_spec, scope=scope)
if compilers:
scope_to_compilers[scope] = compilers
cfg_file_to_duplicates = {}
for scope, compilers in scope_to_compilers.items():
config_file = config.get_config_filename(scope, "compilers")
cfg_file_to_duplicates[config_file] = compilers
return cfg_file_to_duplicates
@llnl.util.lang.memoized
def class_for_compiler_name(compiler_name):
"""Given a compiler module name, get the corresponding Compiler class."""
@@ -766,7 +612,7 @@ def class_for_compiler_name(compiler_name):
submodule_name = compiler_name.replace("-", "_")
module_name = ".".join(["spack", "compilers", submodule_name])
module_obj = __import__(module_name, fromlist=[None])
module_obj = importlib.import_module(module_name)
cls = getattr(module_obj, mod_to_class(compiler_name))
# make a note of the name in the module so we can get to it easily.
@@ -775,272 +621,10 @@ def class_for_compiler_name(compiler_name):
return cls
def all_os_classes():
"""
Return the list of classes for all operating systems available on
this platform
"""
classes = []
platform = spack.platforms.host()
for os_class in platform.operating_sys.values():
classes.append(os_class)
return classes
def all_compiler_types():
return [class_for_compiler_name(c) for c in supported_compilers()]
#: Gathers the attribute values by which a detected compiler is considered
#: unique in Spack.
#:
#: - os: the operating system
#: - compiler_name: the name of the compiler (e.g. 'gcc', 'clang', etc.)
#: - version: the version of the compiler
#:
CompilerID = collections.namedtuple("CompilerID", ["os", "compiler_name", "version"])
#: Variations on a matched compiler name
NameVariation = collections.namedtuple("NameVariation", ["prefix", "suffix"])
#: Groups together the arguments needed by `detect_version`. The four entries
#: in the tuple are:
#:
#: - id: An instance of the CompilerID named tuple (version can be set to None
#: as it will be detected later)
#: - variation: a NameVariation for file being tested
#: - language: compiler language being tested (one of 'cc', 'cxx', 'fc', 'f77')
#: - path: full path to the executable being tested
#:
DetectVersionArgs = collections.namedtuple(
"DetectVersionArgs", ["id", "variation", "language", "path"]
)
def arguments_to_detect_version_fn(
operating_system: spack.operating_systems.OperatingSystem, paths: List[str]
) -> List[DetectVersionArgs]:
"""Returns a list of DetectVersionArgs tuples to be used in a
corresponding function to detect compiler versions.
The ``operating_system`` instance can customize the behavior of this
function by providing a method called with the same name.
Args:
operating_system: the operating system on which we are looking for compilers
paths: paths to search for compilers
Returns:
List of DetectVersionArgs tuples. Each item in the list will be later
mapped to the corresponding function call to detect the version of the
compilers in this OS.
"""
def _default(search_paths: List[str]) -> List[DetectVersionArgs]:
command_arguments: List[DetectVersionArgs] = []
files_to_be_tested = fs.files_in(*search_paths)
for compiler_name in supported_compilers_for_host_platform():
compiler_cls = class_for_compiler_name(compiler_name)
for language in ("cc", "cxx", "f77", "fc"):
# Select only the files matching a regexp
for (file, full_path), regexp in itertools.product(
files_to_be_tested, compiler_cls.search_regexps(language)
):
match = regexp.match(file)
if match:
compiler_id = CompilerID(operating_system, compiler_name, None)
detect_version_args = DetectVersionArgs(
id=compiler_id,
variation=NameVariation(*match.groups()),
language=language,
path=full_path,
)
command_arguments.append(detect_version_args)
return command_arguments
fn = getattr(operating_system, "arguments_to_detect_version_fn", _default)
return fn(paths)
def detect_version(
detect_version_args: DetectVersionArgs,
) -> Tuple[Optional[DetectVersionArgs], Optional[str]]:
"""Computes the version of a compiler and adds it to the information
passed as input.
As this function is meant to be executed by worker processes it won't
raise any exception but instead will return a (value, error) tuple that
needs to be checked by the code dispatching the calls.
Args:
detect_version_args: information on the compiler for which we should detect the version.
Returns:
A ``(DetectVersionArgs, error)`` tuple. If ``error`` is ``None`` the
version of the compiler was computed correctly and the first argument
of the tuple will contain it. Otherwise ``error`` is a string
containing an explanation on why the version couldn't be computed.
"""
def _default(fn_args):
compiler_id = fn_args.id
language = fn_args.language
compiler_cls = class_for_compiler_name(compiler_id.compiler_name)
path = fn_args.path
# Get compiler names and the callback to detect their versions
callback = getattr(compiler_cls, f"{language}_version")
try:
version = callback(path)
if version and str(version).strip() and version != "unknown":
value = fn_args._replace(id=compiler_id._replace(version=version))
return value, None
error = f"Couldn't get version for compiler {path}".format(path)
except spack.util.executable.ProcessError as e:
error = f"Couldn't get version for compiler {path}\n" + str(e)
except spack.util.executable.ProcessTimeoutError as e:
error = f"Couldn't get version for compiler {path}\n" + str(e)
except Exception as e:
# Catching "Exception" here is fine because it just
# means something went wrong running a candidate executable.
error = "Error while executing candidate compiler {0}" "\n{1}: {2}".format(
path, e.__class__.__name__, str(e)
)
return None, error
operating_system = detect_version_args.id.os
fn = getattr(operating_system, "detect_version", _default)
return fn(detect_version_args)
def make_compiler_list(
detected_versions: List[DetectVersionArgs], mixed_toolchain: bool = False
) -> List["spack.compiler.Compiler"]:
"""Process a list of detected versions and turn them into a list of
compiler specs.
Args:
detected_versions: list of DetectVersionArgs containing a valid version
mixed_toolchain: allow mixing compilers from different toolchains if langauge is missing
Returns:
list: list of Compiler objects
"""
group_fn = lambda x: (x.id, x.variation, x.language)
sorted_compilers = sorted(detected_versions, key=group_fn)
# Gather items in a dictionary by the id, name variation and language
compilers_d: Dict[CompilerID, Dict[NameVariation, dict]] = {}
for sort_key, group in itertools.groupby(sorted_compilers, key=group_fn):
compiler_id, name_variation, language = sort_key
by_compiler_id = compilers_d.setdefault(compiler_id, {})
by_name_variation = by_compiler_id.setdefault(name_variation, {})
by_name_variation[language] = next(x.path for x in group)
def _default_make_compilers(cmp_id, paths):
operating_system, compiler_name, version = cmp_id
compiler_cls = class_for_compiler_name(compiler_name)
spec = spack.spec.CompilerSpec(compiler_cls.name, f"={version}")
paths = [paths.get(x, None) for x in ("cc", "cxx", "f77", "fc")]
# TODO: johnwparent - revist the following line as per discussion at:
# https://github.com/spack/spack/pull/33385/files#r1040036318
target = archspec.cpu.host()
compiler = compiler_cls(spec, operating_system, str(target.family), paths)
return [compiler]
# For compilers with the same compiler id:
#
# - Prefer with C compiler to without
# - Prefer with C++ compiler to without
# - Prefer no variations to variations (e.g., clang to clang-gpu)
#
sort_fn = lambda variation: (
"cc" not in by_compiler_id[variation], # None last
"cxx" not in by_compiler_id[variation], # None last
getattr(variation, "prefix", None),
getattr(variation, "suffix", None),
)
# Flatten to a list of compiler id, primary variation and compiler dictionary
flat_compilers: List[Tuple[CompilerID, NameVariation, dict]] = []
for compiler_id, by_compiler_id in compilers_d.items():
ordered = sorted(by_compiler_id, key=sort_fn)
selected_variation = ordered[0]
selected = by_compiler_id[selected_variation]
# Fill any missing parts from subsequent entries (without mixing toolchains)
for lang in ["cxx", "f77", "fc"]:
if lang not in selected:
next_lang = next(
(by_compiler_id[v][lang] for v in ordered if lang in by_compiler_id[v]), None
)
if next_lang:
selected[lang] = next_lang
flat_compilers.append((compiler_id, selected_variation, selected))
# Next, fill out the blanks of missing compilers by creating a mixed toolchain (if requested)
if mixed_toolchain:
make_mixed_toolchain(flat_compilers)
# Finally, create the compiler list
compilers: List["spack.compiler.Compiler"] = []
for compiler_id, _, compiler in flat_compilers:
make_compilers = getattr(compiler_id.os, "make_compilers", _default_make_compilers)
candidates = make_compilers(compiler_id, compiler)
compilers.extend(x for x in candidates if x.cc is not None)
return compilers
def make_mixed_toolchain(compilers: List[Tuple[CompilerID, NameVariation, dict]]) -> None:
"""Add missing compilers across toolchains when they are missing for a particular language.
This currently only adds the most sensible gfortran to (apple)-clang if it doesn't have a
fortran compiler (no flang)."""
# First collect the clangs that are missing a fortran compiler
clangs_without_flang = [
(id, variation, compiler)
for id, variation, compiler in compilers
if id.compiler_name in ("clang", "apple-clang")
and "f77" not in compiler
and "fc" not in compiler
]
if not clangs_without_flang:
return
# Filter on GCCs with fortran compiler
gccs_with_fortran = [
(id, variation, compiler)
for id, variation, compiler in compilers
if id.compiler_name == "gcc" and "f77" in compiler and "fc" in compiler
]
# Sort these GCCs by "best variation" (no prefix / suffix first)
gccs_with_fortran.sort(
key=lambda x: (getattr(x[1], "prefix", None), getattr(x[1], "suffix", None))
)
# Attach the optimal GCC fortran compiler to the clangs that don't have one
for clang_id, _, clang_compiler in clangs_without_flang:
gcc_compiler = next(
(gcc[2] for gcc in gccs_with_fortran if gcc[0].os == clang_id.os), None
)
if not gcc_compiler:
continue
# Update the fc / f77 entries
clang_compiler["f77"] = gcc_compiler["f77"]
clang_compiler["fc"] = gcc_compiler["fc"]
def is_mixed_toolchain(compiler):
"""Returns True if the current compiler is a mixed toolchain,
False otherwise.
@@ -1087,20 +671,164 @@ def name_matches(name, name_list):
return False
_EXTRA_ATTRIBUTES_KEY = "extra_attributes"
_COMPILERS_KEY = "compilers"
_C_KEY = "c"
_CXX_KEY, _FORTRAN_KEY = "cxx", "fortran"
class CompilerConfigFactory:
"""Class aggregating all ways of constructing a list of compiler config entries."""
@staticmethod
def from_specs(specs: List["spack.spec.Spec"]) -> List[dict]:
result = []
compiler_package_names = supported_compilers() + list(package_name_to_compiler_name.keys())
for s in specs:
if s.name not in compiler_package_names:
continue
candidate = CompilerConfigFactory.from_external_spec(s)
if candidate is None:
continue
result.append(candidate)
return result
@staticmethod
def from_packages_yaml(packages_yaml) -> List[dict]:
compiler_specs = []
compiler_package_names = supported_compilers() + list(package_name_to_compiler_name.keys())
for name, entry in packages_yaml.items():
if name not in compiler_package_names:
continue
externals_config = entry.get("externals", None)
if not externals_config:
continue
current_specs = []
for current_external in externals_config:
compiler = CompilerConfigFactory._spec_from_external_config(current_external)
if compiler:
current_specs.append(compiler)
compiler_specs.extend(current_specs)
return CompilerConfigFactory.from_specs(compiler_specs)
@staticmethod
def _spec_from_external_config(config):
# Allow `@x.y.z` instead of `@=x.y.z`
err_header = f"The external spec '{config['spec']}' cannot be used as a compiler"
# If extra_attributes is not there I might not want to use this entry as a compiler,
# therefore just leave a debug message, but don't be loud with a warning.
if _EXTRA_ATTRIBUTES_KEY not in config:
tty.debug(f"[{__file__}] {err_header}: missing the '{_EXTRA_ATTRIBUTES_KEY}' key")
return None
extra_attributes = config[_EXTRA_ATTRIBUTES_KEY]
result = spack.spec.Spec(
str(spack.spec.parse_with_version_concrete(config["spec"])),
external_modules=config.get("modules"),
)
result.extra_attributes = extra_attributes
return result
@staticmethod
def from_external_spec(spec: "spack.spec.Spec") -> Optional[dict]:
spec = spack.spec.parse_with_version_concrete(spec)
extra_attributes = getattr(spec, _EXTRA_ATTRIBUTES_KEY, None)
if extra_attributes is None:
return None
paths = CompilerConfigFactory._extract_compiler_paths(spec)
if paths is None:
return None
compiler_spec = spack.spec.CompilerSpec(
package_name_to_compiler_name.get(spec.name, spec.name), spec.version
)
operating_system, target = CompilerConfigFactory._extract_os_and_target(spec)
compiler_entry = {
"compiler": {
"spec": str(compiler_spec),
"paths": paths,
"flags": extra_attributes.get("flags", {}),
"operating_system": str(operating_system),
"target": str(target.family),
"modules": getattr(spec, "external_modules", []),
"environment": extra_attributes.get("environment", {}),
"extra_rpaths": extra_attributes.get("extra_rpaths", []),
"implicit_rpaths": extra_attributes.get("implicit_rpaths", None),
}
}
return compiler_entry
@staticmethod
def _extract_compiler_paths(spec: "spack.spec.Spec") -> Optional[Dict[str, str]]:
err_header = f"The external spec '{spec}' cannot be used as a compiler"
extra_attributes = spec.extra_attributes
# If I have 'extra_attributes' warn if 'compilers' is missing,
# or we don't have a C compiler
if _COMPILERS_KEY not in extra_attributes:
warnings.warn(
f"{err_header}: missing the '{_COMPILERS_KEY}' key under '{_EXTRA_ATTRIBUTES_KEY}'"
)
return None
attribute_compilers = extra_attributes[_COMPILERS_KEY]
if _C_KEY not in attribute_compilers:
warnings.warn(
f"{err_header}: missing the C compiler path under "
f"'{_EXTRA_ATTRIBUTES_KEY}:{_COMPILERS_KEY}'"
)
return None
c_compiler = attribute_compilers[_C_KEY]
# C++ and Fortran compilers are not mandatory, so let's just leave a debug trace
if _CXX_KEY not in attribute_compilers:
tty.debug(f"[{__file__}] The external spec {spec} does not have a C++ compiler")
if _FORTRAN_KEY not in attribute_compilers:
tty.debug(f"[{__file__}] The external spec {spec} does not have a Fortran compiler")
# compilers format has cc/fc/f77, externals format has "c/fortran"
return {
"cc": c_compiler,
"cxx": attribute_compilers.get(_CXX_KEY, None),
"fc": attribute_compilers.get(_FORTRAN_KEY, None),
"f77": attribute_compilers.get(_FORTRAN_KEY, None),
}
@staticmethod
def _extract_os_and_target(spec: "spack.spec.Spec"):
if not spec.architecture:
host_platform = spack.platforms.host()
operating_system = host_platform.operating_system("default_os")
target = host_platform.target("default_target").microarchitecture
else:
target = spec.architecture.target
if not target:
target = spack.platforms.host().target("default_target")
target = target.microarchitecture
operating_system = spec.os
if not operating_system:
host_platform = spack.platforms.host()
operating_system = host_platform.operating_system("default_os")
return operating_system, target
class InvalidCompilerConfigurationError(spack.error.SpackError):
def __init__(self, compiler_spec):
super().__init__(
'Invalid configuration for [compiler "%s"]: ' % compiler_spec,
"Compiler configuration must contain entries for all compilers: %s"
% _path_instance_vars,
f'Invalid configuration for [compiler "{compiler_spec}"]: ',
f"Compiler configuration must contain entries for "
f"all compilers: {spack.compiler.PATH_INSTANCE_VARS}",
)
class NoCompilersError(spack.error.SpackError):
def __init__(self):
super().__init__("Spack could not find any compilers!")
class UnknownCompilerError(spack.error.SpackError):
def __init__(self, compiler_name):
super().__init__("Spack doesn't support the requested compiler: {0}".format(compiler_name))
@@ -1111,25 +839,3 @@ def __init__(self, compiler_spec, target):
super().__init__(
"No compilers for operating system %s satisfy spec %s" % (target, compiler_spec)
)
class CompilerDuplicateError(spack.error.SpackError):
def __init__(self, compiler_spec, arch_spec):
config_file_to_duplicates = get_compiler_duplicates(compiler_spec, arch_spec)
duplicate_table = list((x, len(y)) for x, y in config_file_to_duplicates.items())
descriptor = lambda num: "time" if num == 1 else "times"
duplicate_msg = lambda cfgfile, count: "{0}: {1} {2}".format(
cfgfile, str(count), descriptor(count)
)
msg = (
"Compiler configuration contains entries with duplicate"
+ " specification ({0}, {1})".format(compiler_spec, arch_spec)
+ " in the following files:\n\t"
+ "\n\t".join(duplicate_msg(x, y) for x, y in duplicate_table)
)
super().__init__(msg)
class CompilerSpecInsufficientlySpecificError(spack.error.SpackError):
def __init__(self, compiler_spec):
super().__init__("Multiple compilers satisfy spec %s" % compiler_spec)

View File

@@ -25,9 +25,6 @@ class Aocc(Compiler):
# Subclasses use possible names of Fortran 90 compiler
fc_names = ["flang"]
PrgEnv = "PrgEnv-aocc"
PrgEnv_compiler = "aocc"
version_argument = "--version"
@property

View File

@@ -34,12 +34,9 @@ def __init__(self, *args, **kwargs):
# MacPorts builds gcc versions with prefixes and -mp-X.Y suffixes.
suffixes = [r"-mp-\d\.\d"]
PrgEnv = "PrgEnv-cray"
PrgEnv_compiler = "cce"
@property
def link_paths(self):
if any(self.PrgEnv in m for m in self.modules):
if any("PrgEnv-cray" in m for m in self.modules):
# Old module-based interface to cray compilers
return {
"cc": os.path.join("cce", "cc"),

View File

@@ -40,9 +40,6 @@ class Gcc(spack.compiler.Compiler):
"fc": os.path.join("gcc", "gfortran"),
}
PrgEnv = "PrgEnv-gnu"
PrgEnv_compiler = "gcc"
@property
def verbose_flag(self):
return "-v"

View File

@@ -31,9 +31,6 @@ class Intel(Compiler):
"fc": os.path.join("intel", "ifort"),
}
PrgEnv = "PrgEnv-intel"
PrgEnv_compiler = "intel"
if sys.platform == "win32":
version_argument = "/QV"
else:
@@ -126,3 +123,14 @@ def fc_pic_flag(self):
@property
def stdcxx_libs(self):
return ("-cxxlib",)
def setup_custom_environment(self, pkg, env):
# Edge cases for Intel's oneAPI compilers when using the legacy classic compilers:
# Always pass flags to disable deprecation warnings, since these warnings can
# confuse tools that parse the output of compiler commands (e.g. version checks).
if self.cc and self.cc.endswith("icc") and self.real_version >= Version("2021"):
env.append_flags("SPACK_ALWAYS_CFLAGS", "-diag-disable=10441")
if self.cxx and self.cxx.endswith("icpc") and self.real_version >= Version("2021"):
env.append_flags("SPACK_ALWAYS_CXXFLAGS", "-diag-disable=10441")
if self.fc and self.fc.endswith("ifort") and self.real_version >= Version("2021"):
env.append_flags("SPACK_ALWAYS_FFLAGS", "-diag-disable=10448")

View File

@@ -223,6 +223,30 @@ def get_oneapi_root(pth: str):
)
self.msvc_compiler_environment = CmdCall(*env_cmds)
@property
def cxx11_flag(self):
return "/std:c++11"
@property
def cxx14_flag(self):
return "/std:c++14"
@property
def cxx17_flag(self):
return "/std:c++17"
@property
def cxx20_flag(self):
return "/std:c++20"
@property
def c11_flag(self):
return "/std:c11"
@property
def c17_flag(self):
return "/std:c17"
@property
def msvc_version(self):
"""This is the VCToolset version *NOT* the actual version of the cl compiler
@@ -231,24 +255,55 @@ def msvc_version(self):
@property
def short_msvc_version(self):
"""This is the shorthand VCToolset version of form
MSVC<short-ver>
"""
This is the shorthand VCToolset version of form
MSVC<short-ver> *NOT* the full version, for that see
return "MSVC" + self.vc_toolset_ver
@property
def vc_toolset_ver(self):
"""
The toolset version is the version of the combined set of cl and link
This typically relates directly to VS version i.e. VS 2022 is v143
VS 19 is v142, etc.
This value is defined by the first three digits of the major + minor
version of the VS toolset (143 for 14.3x.bbbbb). Traditionally the
minor version has remained a static two digit number for a VS release
series, however, as of VS22, this is no longer true, both
14.4x.bbbbb and 14.3x.bbbbb are considered valid VS22 VC toolset
versions due to a change in toolset minor version sentiment.
This is *NOT* the full version, for that see
Msvc.msvc_version or MSVC.platform_toolset_ver for the
raw platform toolset version
"""
ver = self.platform_toolset_ver
return "MSVC" + ver
ver = self.msvc_version[:2].joined.string[:3]
return ver
@property
def platform_toolset_ver(self):
"""
This is the platform toolset version of current MSVC compiler
i.e. 142.
i.e. 142. The platform toolset is the targeted MSVC library/compiler
versions by compilation (this is different from the VC Toolset)
This is different from the VC toolset version as established
by `short_msvc_version`
by `short_msvc_version`, but typically are represented by the same
three digit value
"""
return self.msvc_version[:2].joined.string[:3]
# Typically VS toolset version and platform toolset versions match
# VS22 introduces the first divergence of VS toolset version
# (144 for "recent" releases) and platform toolset version (143)
# so it needs additional handling until MS releases v144
# (assuming v144 is also for VS22)
# or adds better support for detection
# TODO: (johnwparent) Update this logic for the next platform toolset
# or VC toolset version update
toolset_ver = self.vc_toolset_ver
vs22_toolset = Version(toolset_ver) > Version("142")
return toolset_ver if not vs22_toolset else "143"
def _compiler_version(self, compiler):
"""Returns version object for given compiler"""

View File

@@ -29,9 +29,6 @@ class Nvhpc(Compiler):
"fc": os.path.join("nvhpc", "nvfortran"),
}
PrgEnv = "PrgEnv-nvhpc"
PrgEnv_compiler = "nvhpc"
version_argument = "--version"
version_regex = r"nv[^ ]* (?:[^ ]+ Dev-r)?([0-9.]+)(?:-[0-9]+)?"

View File

@@ -9,6 +9,7 @@
from llnl.util import tty
from spack.compiler import Compiler
from spack.version import Version
class Oneapi(Compiler):
@@ -32,9 +33,6 @@ class Oneapi(Compiler):
"fc": os.path.join("oneapi", "ifx"),
}
PrgEnv = "PrgEnv-oneapi"
PrgEnv_compiler = "oneapi"
version_argument = "--version"
version_regex = r"(?:(?:oneAPI DPC\+\+(?:\/C\+\+)? Compiler)|(?:\(IFORT\))|(?:\(IFX\))) (\S+)"
@@ -142,6 +140,16 @@ def setup_custom_environment(self, pkg, env):
env.prepend_path("PATH", dirname(self.cxx))
env.prepend_path("LD_LIBRARY_PATH", join(dirname(dirname(self.cxx)), "lib"))
# Edge cases for Intel's oneAPI compilers when using the legacy classic compilers:
# Always pass flags to disable deprecation warnings, since these warnings can
# confuse tools that parse the output of compiler commands (e.g. version checks).
if self.cc and self.cc.endswith("icc") and self.real_version >= Version("2021"):
env.append_flags("SPACK_ALWAYS_CFLAGS", "-diag-disable=10441")
if self.cxx and self.cxx.endswith("icpc") and self.real_version >= Version("2021"):
env.append_flags("SPACK_ALWAYS_CXXFLAGS", "-diag-disable=10441")
if self.fc and self.fc.endswith("ifort") and self.real_version >= Version("2021"):
env.append_flags("SPACK_ALWAYS_FFLAGS", "-diag-disable=10448")
# 2024 release bumped the libsycl version because of an ABI
# change, 2024 compilers are required. You will see this
# error:

View File

@@ -30,9 +30,6 @@ class Pgi(Compiler):
"fc": os.path.join("pgi", "pgfortran"),
}
PrgEnv = "PrgEnv-pgi"
PrgEnv_compiler = "pgi"
version_argument = "-V"
ignore_version_errors = [2] # `pgcc -V` on PowerPC annoyingly returns 2
version_regex = r"pg[^ ]* ([0-9.]+)-[0-9]+ (LLVM )?[^ ]+ target on "

View File

@@ -23,9 +23,6 @@ class Rocmcc(spack.compilers.clang.Clang):
# Subclasses use possible names of Fortran 90 compiler
fc_names = ["amdflang"]
PrgEnv = "PrgEnv-amd"
PrgEnv_compiler = "amd"
@property
def link_paths(self):
link_paths = {

View File

@@ -2,31 +2,12 @@
# Spack Project Developers. See the top-level COPYRIGHT file for details.
#
# SPDX-License-Identifier: (Apache-2.0 OR MIT)
"""
Functions here are used to take abstract specs and make them concrete.
For example, if a spec asks for a version between 1.8 and 1.9, these
functions might take will take the most recent 1.9 version of the
package available. Or, if the user didn't specify a compiler for a
spec, then this will assign a compiler to the spec based on defaults
or user preferences.
TODO: make this customizable and allow users to configure
concretization policies.
(DEPRECATED) Used to contain the code for the original concretizer
"""
import functools
import platform
import tempfile
from contextlib import contextmanager
from itertools import chain
from typing import Union
import archspec.cpu
import llnl.util.lang
import llnl.util.tty as tty
import spack.abi
import spack.compilers
import spack.config
import spack.environment
@@ -37,639 +18,20 @@
import spack.target
import spack.tengine
import spack.util.path
import spack.variant as vt
from spack.package_prefs import PackagePrefs, is_spec_buildable, spec_externals
from spack.version import ClosedOpenRange, VersionList, ver
#: impements rudimentary logic for ABI compatibility
_abi: Union[spack.abi.ABI, llnl.util.lang.Singleton] = llnl.util.lang.Singleton(
lambda: spack.abi.ABI()
)
@functools.total_ordering
class reverse_order:
"""Helper for creating key functions.
This is a wrapper that inverts the sense of the natural
comparisons on the object.
"""
def __init__(self, value):
self.value = value
def __eq__(self, other):
return other.value == self.value
def __lt__(self, other):
return other.value < self.value
class Concretizer:
"""You can subclass this class to override some of the default
concretization strategies, or you can override all of them.
"""
"""(DEPRECATED) Only contains logic to enable/disable compiler existence checks."""
#: Controls whether we check that compiler versions actually exist
#: during concretization. Used for testing and for mirror creation
check_for_compiler_existence = None
#: Packages that the old concretizer cannot deal with correctly, and cannot build anyway.
#: Those will not be considered as providers for virtuals.
non_buildable_packages = {"glibc", "musl"}
def __init__(self, abstract_spec=None):
def __init__(self):
if Concretizer.check_for_compiler_existence is None:
Concretizer.check_for_compiler_existence = not spack.config.get(
"config:install_missing_compilers", False
)
self.abstract_spec = abstract_spec
self._adjust_target_answer_generator = None
def concretize_develop(self, spec):
"""
Add ``dev_path=*`` variant to packages built from local source.
"""
env = spack.environment.active_environment()
dev_info = env.dev_specs.get(spec.name, {}) if env else {}
if not dev_info:
return False
path = spack.util.path.canonicalize_path(dev_info["path"], default_wd=env.path)
if "dev_path" in spec.variants:
assert spec.variants["dev_path"].value == path
changed = False
else:
spec.variants.setdefault("dev_path", vt.SingleValuedVariant("dev_path", path))
changed = True
changed |= spec.constrain(dev_info["spec"])
return changed
def _valid_virtuals_and_externals(self, spec):
"""Returns a list of candidate virtual dep providers and external
packages that coiuld be used to concretize a spec.
Preferred specs come first in the list.
"""
# First construct a list of concrete candidates to replace spec with.
candidates = [spec]
pref_key = lambda spec: 0 # no-op pref key
if spec.virtual:
candidates = [
s
for s in spack.repo.PATH.providers_for(spec)
if s.name not in self.non_buildable_packages
]
if not candidates:
raise spack.error.UnsatisfiableProviderSpecError(candidates[0], spec)
# Find nearest spec in the DAG (up then down) that has prefs.
spec_w_prefs = find_spec(
spec, lambda p: PackagePrefs.has_preferred_providers(p.name, spec.name), spec
) # default to spec itself.
# Create a key to sort candidates by the prefs we found
pref_key = PackagePrefs(spec_w_prefs.name, "providers", spec.name)
# For each candidate package, if it has externals, add those
# to the usable list. if it's not buildable, then *only* add
# the externals.
usable = []
for cspec in candidates:
if is_spec_buildable(cspec):
usable.append(cspec)
externals = spec_externals(cspec)
for ext in externals:
if ext.intersects(spec):
usable.append(ext)
# If nothing is in the usable list now, it's because we aren't
# allowed to build anything.
if not usable:
raise NoBuildError(spec)
# Use a sort key to order the results
return sorted(
usable,
key=lambda spec: (
not spec.external, # prefer externals
pref_key(spec), # respect prefs
spec.name, # group by name
reverse_order(spec.versions), # latest version
spec, # natural order
),
)
def choose_virtual_or_external(self, spec: spack.spec.Spec):
"""Given a list of candidate virtual and external packages, try to
find one that is most ABI compatible.
"""
candidates = self._valid_virtuals_and_externals(spec)
if not candidates:
return candidates
# Find the nearest spec in the dag that has a compiler. We'll
# use that spec to calibrate compiler compatibility.
abi_exemplar = find_spec(spec, lambda x: x.compiler)
if abi_exemplar is None:
abi_exemplar = spec.root
# Sort candidates from most to least compatibility.
# We reverse because True > False.
# Sort is stable, so candidates keep their order.
return sorted(
candidates,
reverse=True,
key=lambda spec: (
_abi.compatible(spec, abi_exemplar, loose=True),
_abi.compatible(spec, abi_exemplar),
),
)
def concretize_version(self, spec):
"""If the spec is already concrete, return. Otherwise take
the preferred version from spackconfig, and default to the package's
version if there are no available versions.
TODO: In many cases we probably want to look for installed
versions of each package and use an installed version
if we can link to it. The policy implemented here will
tend to rebuild a lot of stuff becasue it will prefer
a compiler in the spec to any compiler already-
installed things were built with. There is likely
some better policy that finds some middle ground
between these two extremes.
"""
# return if already concrete.
if spec.versions.concrete:
return False
# List of versions we could consider, in sorted order
pkg_versions = spec.package_class.versions
usable = [v for v in pkg_versions if any(v.intersects(sv) for sv in spec.versions)]
yaml_prefs = PackagePrefs(spec.name, "version")
# The keys below show the order of precedence of factors used
# to select a version when concretizing. The item with
# the "largest" key will be selected.
#
# NOTE: When COMPARING VERSIONS, the '@develop' version is always
# larger than other versions. BUT when CONCRETIZING,
# the largest NON-develop version is selected by default.
keyfn = lambda v: (
# ------- Special direction from the user
# Respect order listed in packages.yaml
-yaml_prefs(v),
# The preferred=True flag (packages or packages.yaml or both?)
pkg_versions.get(v).get("preferred", False),
# ------- Regular case: use latest non-develop version by default.
# Avoid @develop version, which would otherwise be the "largest"
# in straight version comparisons
not v.isdevelop(),
# Compare the version itself
# This includes the logic:
# a) develop > everything (disabled by "not v.isdevelop() above)
# b) numeric > non-numeric
# c) Numeric or string comparison
v,
)
usable.sort(key=keyfn, reverse=True)
if usable:
spec.versions = ver([usable[0]])
else:
# We don't know of any SAFE versions that match the given
# spec. Grab the spec's versions and grab the highest
# *non-open* part of the range of versions it specifies.
# Someone else can raise an error if this happens,
# e.g. when we go to fetch it and don't know how. But it
# *might* work.
if not spec.versions or spec.versions == VersionList([":"]):
raise NoValidVersionError(spec)
else:
last = spec.versions[-1]
if isinstance(last, ClosedOpenRange):
range_as_version = VersionList([last]).concrete_range_as_version
if range_as_version:
spec.versions = ver([range_as_version])
else:
raise NoValidVersionError(spec)
else:
spec.versions = ver([last])
return True # Things changed
def concretize_architecture(self, spec):
"""If the spec is empty provide the defaults of the platform. If the
architecture is not a string type, then check if either the platform,
target or operating system are concretized. If any of the fields are
changed then return True. If everything is concretized (i.e the
architecture attribute is a namedtuple of classes) then return False.
If the target is a string type, then convert the string into a
concretized architecture. If it has no architecture and the root of the
DAG has an architecture, then use the root otherwise use the defaults
on the platform.
"""
# ensure type safety for the architecture
if spec.architecture is None:
spec.architecture = spack.spec.ArchSpec()
if spec.architecture.concrete:
return False
# Get platform of nearest spec with a platform, including spec
# If spec has a platform, easy
if spec.architecture.platform:
new_plat = spack.platforms.by_name(spec.architecture.platform)
else:
# Else if anyone else has a platform, take the closest one
# Search up, then down, along build/link deps first
# Then any nearest. Algorithm from compilerspec search
platform_spec = find_spec(spec, lambda x: x.architecture and x.architecture.platform)
if platform_spec:
new_plat = spack.platforms.by_name(platform_spec.architecture.platform)
else:
# If no platform anywhere in this spec, grab the default
new_plat = spack.platforms.host()
# Get nearest spec with relevant platform and an os
# Generally, same algorithm as finding platform, except we only
# consider specs that have a platform
if spec.architecture.os:
new_os = spec.architecture.os
else:
new_os_spec = find_spec(
spec,
lambda x: (
x.architecture
and x.architecture.platform == str(new_plat)
and x.architecture.os
),
)
if new_os_spec:
new_os = new_os_spec.architecture.os
else:
new_os = new_plat.operating_system("default_os")
# Get the nearest spec with relevant platform and a target
# Generally, same algorithm as finding os
curr_target = None
if spec.architecture.target:
curr_target = spec.architecture.target
if spec.architecture.target and spec.architecture.target_concrete:
new_target = spec.architecture.target
else:
new_target_spec = find_spec(
spec,
lambda x: (
x.architecture
and x.architecture.platform == str(new_plat)
and x.architecture.target
and x.architecture.target != curr_target
),
)
if new_target_spec:
if curr_target:
# constrain one target by the other
new_target_arch = spack.spec.ArchSpec(
(None, None, new_target_spec.architecture.target)
)
curr_target_arch = spack.spec.ArchSpec((None, None, curr_target))
curr_target_arch.constrain(new_target_arch)
new_target = curr_target_arch.target
else:
new_target = new_target_spec.architecture.target
else:
# To get default platform, consider package prefs
if PackagePrefs.has_preferred_targets(spec.name):
new_target = self.target_from_package_preferences(spec)
else:
new_target = new_plat.target("default_target")
if curr_target:
# convert to ArchSpec to compare satisfaction
new_target_arch = spack.spec.ArchSpec((None, None, str(new_target)))
curr_target_arch = spack.spec.ArchSpec((None, None, str(curr_target)))
if not new_target_arch.intersects(curr_target_arch):
# new_target is an incorrect guess based on preferences
# and/or default
valid_target_ranges = str(curr_target).split(",")
for target_range in valid_target_ranges:
t_min, t_sep, t_max = target_range.partition(":")
if not t_sep:
new_target = t_min
break
elif t_max:
new_target = t_max
break
elif t_min:
# TODO: something better than picking first
new_target = t_min
break
# Construct new architecture, compute whether spec changed
arch_spec = (str(new_plat), str(new_os), str(new_target))
new_arch = spack.spec.ArchSpec(arch_spec)
spec_changed = new_arch != spec.architecture
spec.architecture = new_arch
return spec_changed
def target_from_package_preferences(self, spec):
"""Returns the preferred target from the package preferences if
there's any.
Args:
spec: abstract spec to be concretized
"""
target_prefs = PackagePrefs(spec.name, "target")
target_specs = [spack.spec.Spec("target=%s" % tname) for tname in archspec.cpu.TARGETS]
def tspec_filter(s):
# Filter target specs by whether the architecture
# family is the current machine type. This ensures
# we only consider x86_64 targets when on an
# x86_64 machine, etc. This may need to change to
# enable setting cross compiling as a default
target = archspec.cpu.TARGETS[str(s.architecture.target)]
arch_family_name = target.family.name
return arch_family_name == platform.machine()
# Sort filtered targets by package prefs
target_specs = list(filter(tspec_filter, target_specs))
target_specs.sort(key=target_prefs)
new_target = target_specs[0].architecture.target
return new_target
def concretize_variants(self, spec):
"""If the spec already has variants filled in, return. Otherwise, add
the user preferences from packages.yaml or the default variants from
the package specification.
"""
changed = False
preferred_variants = PackagePrefs.preferred_variants(spec.name)
pkg_cls = spec.package_class
for name, entry in pkg_cls.variants.items():
variant, when = entry
var = spec.variants.get(name, None)
if var and "*" in var:
# remove variant wildcard before concretizing
# wildcard cannot be combined with other variables in a
# multivalue variant, a concrete variant cannot have the value
# wildcard, and a wildcard does not constrain a variant
spec.variants.pop(name)
if name not in spec.variants and any(spec.satisfies(w) for w in when):
changed = True
if name in preferred_variants:
spec.variants[name] = preferred_variants.get(name)
else:
spec.variants[name] = variant.make_default()
if name in spec.variants and not any(spec.satisfies(w) for w in when):
raise vt.InvalidVariantForSpecError(name, when, spec)
return changed
def concretize_compiler(self, spec):
"""If the spec already has a compiler, we're done. If not, then take
the compiler used for the nearest ancestor with a compiler
spec and use that. If the ancestor's compiler is not
concrete, then used the preferred compiler as specified in
spackconfig.
Intuition: Use the spackconfig default if no package that depends on
this one has a strict compiler requirement. Otherwise, try to
build with the compiler that will be used by libraries that
link to this one, to maximize compatibility.
"""
# Pass on concretizing the compiler if the target or operating system
# is not yet determined
if not spec.architecture.concrete:
# We haven't changed, but other changes need to happen before we
# continue. `return True` here to force concretization to keep
# running.
return True
# Only use a matching compiler if it is of the proper style
# Takes advantage of the proper logic already existing in
# compiler_for_spec Should think whether this can be more
# efficient
def _proper_compiler_style(cspec, aspec):
compilers = spack.compilers.compilers_for_spec(cspec, arch_spec=aspec)
# If the spec passed as argument is concrete we want to check
# the versions match exactly
if (
cspec.concrete
and compilers
and cspec.version not in [c.version for c in compilers]
):
return []
return compilers
if spec.compiler and spec.compiler.concrete:
if self.check_for_compiler_existence and not _proper_compiler_style(
spec.compiler, spec.architecture
):
_compiler_concretization_failure(spec.compiler, spec.architecture)
return False
# Find another spec that has a compiler, or the root if none do
other_spec = spec if spec.compiler else find_spec(spec, lambda x: x.compiler, spec.root)
other_compiler = other_spec.compiler
assert other_spec
# Check if the compiler is already fully specified
if other_compiler and other_compiler.concrete:
if self.check_for_compiler_existence and not _proper_compiler_style(
other_compiler, spec.architecture
):
_compiler_concretization_failure(other_compiler, spec.architecture)
spec.compiler = other_compiler
return True
if other_compiler: # Another node has abstract compiler information
compiler_list = spack.compilers.find_specs_by_arch(other_compiler, spec.architecture)
if not compiler_list:
# We don't have a matching compiler installed
if not self.check_for_compiler_existence:
# Concretize compiler spec versions as a package to build
cpkg_spec = spack.compilers.pkg_spec_for_compiler(other_compiler)
self.concretize_version(cpkg_spec)
spec.compiler = spack.spec.CompilerSpec(
other_compiler.name, cpkg_spec.versions
)
return True
else:
# No compiler with a satisfactory spec was found
raise UnavailableCompilerVersionError(other_compiler, spec.architecture)
else:
# We have no hints to go by, grab any compiler
compiler_list = spack.compilers.all_compiler_specs()
if not compiler_list:
# Spack has no compilers.
raise spack.compilers.NoCompilersError()
# By default, prefer later versions of compilers
compiler_list = sorted(compiler_list, key=lambda x: (x.name, x.version), reverse=True)
ppk = PackagePrefs(other_spec.name, "compiler")
matches = sorted(compiler_list, key=ppk)
# copy concrete version into other_compiler
try:
spec.compiler = next(
c for c in matches if _proper_compiler_style(c, spec.architecture)
).copy()
except StopIteration:
# No compiler with a satisfactory spec has a suitable arch
_compiler_concretization_failure(other_compiler, spec.architecture)
assert spec.compiler.concrete
return True # things changed.
def concretize_compiler_flags(self, spec):
"""
The compiler flags are updated to match those of the spec whose
compiler is used, defaulting to no compiler flags in the spec.
Default specs set at the compiler level will still be added later.
"""
# Pass on concretizing the compiler flags if the target or operating
# system is not set.
if not spec.architecture.concrete:
# We haven't changed, but other changes need to happen before we
# continue. `return True` here to force concretization to keep
# running.
return True
compiler_match = lambda other: (
spec.compiler == other.compiler and spec.architecture == other.architecture
)
ret = False
for flag in spack.spec.FlagMap.valid_compiler_flags():
if flag not in spec.compiler_flags:
spec.compiler_flags[flag] = list()
try:
nearest = next(
p
for p in spec.traverse(direction="parents")
if (compiler_match(p) and (p is not spec) and flag in p.compiler_flags)
)
nearest_flags = nearest.compiler_flags.get(flag, [])
flags = spec.compiler_flags.get(flag, [])
if set(nearest_flags) - set(flags):
spec.compiler_flags[flag] = list(llnl.util.lang.dedupe(nearest_flags + flags))
ret = True
except StopIteration:
pass
# Include the compiler flag defaults from the config files
# This ensures that spack will detect conflicts that stem from a change
# in default compiler flags.
try:
compiler = spack.compilers.compiler_for_spec(spec.compiler, spec.architecture)
except spack.compilers.NoCompilerForSpecError:
if self.check_for_compiler_existence:
raise
return ret
for flag in compiler.flags:
config_flags = compiler.flags.get(flag, [])
flags = spec.compiler_flags.get(flag, [])
spec.compiler_flags[flag] = list(llnl.util.lang.dedupe(config_flags + flags))
if set(config_flags) - set(flags):
ret = True
return ret
def adjust_target(self, spec):
"""Adjusts the target microarchitecture if the compiler is too old
to support the default one.
Args:
spec: spec to be concretized
Returns:
True if spec was modified, False otherwise
"""
# To minimize the impact on performance this function will attempt
# to adjust the target only at the very first call once necessary
# information is set. It will just return False on subsequent calls.
# The way this is achieved is by initializing a generator and making
# this function return the next answer.
if not (spec.architecture and spec.architecture.concrete):
# Not ready, but keep going because we have work to do later
return True
def _make_only_one_call(spec):
yield self._adjust_target(spec)
while True:
yield False
if self._adjust_target_answer_generator is None:
self._adjust_target_answer_generator = _make_only_one_call(spec)
return next(self._adjust_target_answer_generator)
def _adjust_target(self, spec):
"""Assumes that the architecture and the compiler have been
set already and checks if the current target microarchitecture
is the default and can be optimized by the compiler.
If not, downgrades the microarchitecture until a suitable one
is found. If none can be found raise an error.
Args:
spec: spec to be concretized
Returns:
True if any modification happened, False otherwise
"""
import archspec.cpu
# Try to adjust the target only if it is the default
# target for this platform
current_target = spec.architecture.target
current_platform = spack.platforms.by_name(spec.architecture.platform)
default_target = current_platform.target("default_target")
if PackagePrefs.has_preferred_targets(spec.name):
default_target = self.target_from_package_preferences(spec)
if current_target != default_target or (
self.abstract_spec
and self.abstract_spec.architecture
and self.abstract_spec.architecture.concrete
):
return False
try:
current_target.optimization_flags(spec.compiler)
except archspec.cpu.UnsupportedMicroarchitecture:
microarchitecture = current_target.microarchitecture
for ancestor in microarchitecture.ancestors:
candidate = None
try:
candidate = spack.target.Target(ancestor)
candidate.optimization_flags(spec.compiler)
except archspec.cpu.UnsupportedMicroarchitecture:
continue
if candidate is not None:
msg = (
"{0.name}@{0.version} cannot build optimized "
'binaries for "{1}". Using best target possible: '
'"{2}"'
)
msg = msg.format(spec.compiler, current_target, candidate)
tty.warn(msg)
spec.architecture.target = candidate
return True
else:
raise
return False
@contextmanager
@@ -719,19 +81,6 @@ def find_spec(spec, condition, default=None):
return default # Nothing matched the condition; return default.
def _compiler_concretization_failure(compiler_spec, arch):
# Distinguish between the case that there are compilers for
# the arch but not with the given compiler spec and the case that
# there are no compilers for the arch at all
if not spack.compilers.compilers_for_arch(arch):
available_os_targets = set(
(c.operating_system, c.target) for c in spack.compilers.all_compilers()
)
raise NoCompilersForArchError(arch, available_os_targets)
else:
raise UnavailableCompilerVersionError(compiler_spec, arch)
def concretize_specs_together(*abstract_specs, **kwargs):
"""Given a number of specs as input, tries to concretize them together.
@@ -744,12 +93,6 @@ def concretize_specs_together(*abstract_specs, **kwargs):
Returns:
List of concretized specs
"""
if spack.config.get("config:concretizer", "clingo") == "original":
return _concretize_specs_together_original(*abstract_specs, **kwargs)
return _concretize_specs_together_new(*abstract_specs, **kwargs)
def _concretize_specs_together_new(*abstract_specs, **kwargs):
import spack.solver.asp
allow_deprecated = spack.config.get("config:deprecated", False)
@@ -760,51 +103,6 @@ def _concretize_specs_together_new(*abstract_specs, **kwargs):
return [s.copy() for s in result.specs]
def _concretize_specs_together_original(*abstract_specs, **kwargs):
abstract_specs = [spack.spec.Spec(s) for s in abstract_specs]
tmpdir = tempfile.mkdtemp()
builder = spack.repo.MockRepositoryBuilder(tmpdir)
# Split recursive specs, as it seems the concretizer has issue
# respecting conditions on dependents expressed like
# depends_on('foo ^bar@1.0'), see issue #11160
split_specs = [
dep.copy(deps=False) for spec1 in abstract_specs for dep in spec1.traverse(root=True)
]
builder.add_package(
"concretizationroot", dependencies=[(str(x), None, None) for x in split_specs]
)
with spack.repo.use_repositories(builder.root, override=False):
# Spec from a helper package that depends on all the abstract_specs
concretization_root = spack.spec.Spec("concretizationroot")
concretization_root.concretize(tests=kwargs.get("tests", False))
# Retrieve the direct dependencies
concrete_specs = [concretization_root[spec.name].copy() for spec in abstract_specs]
return concrete_specs
class NoCompilersForArchError(spack.error.SpackError):
def __init__(self, arch, available_os_targets):
err_msg = (
"No compilers found"
" for operating system %s and target %s."
"\nIf previous installations have succeeded, the"
" operating system may have been updated." % (arch.os, arch.target)
)
available_os_target_strs = list()
for operating_system, t in available_os_targets:
os_target_str = "%s-%s" % (operating_system, t) if t else operating_system
available_os_target_strs.append(os_target_str)
err_msg += (
"\nCompilers are defined for the following"
" operating systems and targets:\n\t" + "\n\t".join(available_os_target_strs)
)
super().__init__(err_msg, "Run 'spack compiler find' to add compilers.")
class UnavailableCompilerVersionError(spack.error.SpackError):
"""Raised when there is no available compiler that satisfies a
compiler spec."""
@@ -820,37 +118,3 @@ def __init__(self, compiler_spec, arch=None):
"'spack compilers' to see which compilers are already recognized"
" by spack.",
)
class NoValidVersionError(spack.error.SpackError):
"""Raised when there is no way to have a concrete version for a
particular spec."""
def __init__(self, spec):
super().__init__(
"There are no valid versions for %s that match '%s'" % (spec.name, spec.versions)
)
class InsufficientArchitectureInfoError(spack.error.SpackError):
"""Raised when details on architecture cannot be collected from the
system"""
def __init__(self, spec, archs):
super().__init__(
"Cannot determine necessary architecture information for '%s': %s"
% (spec.name, str(archs))
)
class NoBuildError(spack.error.SpecError):
"""Raised when a package is configured with the buildable option False, but
no satisfactory external versions can be found
"""
def __init__(self, spec):
msg = (
"The spec\n '%s'\n is configured as not buildable, "
"and no matching external installs were found"
)
super().__init__(msg % spec)

View File

@@ -99,7 +99,6 @@
"dirty": False,
"build_jobs": min(16, cpus_available()),
"build_stage": "$tempdir/spack-stage",
"concretizer": "clingo",
"license_dir": spack.paths.default_license_dir,
}
}
@@ -1091,7 +1090,7 @@ def validate(
def read_config_file(
filename: str, schema: Optional[YamlConfigDict] = None
path: str, schema: Optional[YamlConfigDict] = None
) -> Optional[YamlConfigDict]:
"""Read a YAML configuration file.
@@ -1101,21 +1100,9 @@ def read_config_file(
# to preserve flexibility in calling convention (don't need to provide
# schema when it's not necessary) while allowing us to validate against a
# known schema when the top-level key could be incorrect.
if not os.path.exists(filename):
# Ignore nonexistent files.
tty.debug(f"Skipping nonexistent config path {filename}", level=3)
return None
elif not os.path.isfile(filename):
raise ConfigFileError(f"Invalid configuration. {filename} exists but is not a file.")
elif not os.access(filename, os.R_OK):
raise ConfigFileError(f"Config file is not readable: {filename}")
try:
tty.debug(f"Reading config from file {filename}")
with open(filename) as f:
with open(path) as f:
tty.debug(f"Reading config from file {path}")
data = syaml.load_config(f)
if data:
@@ -1126,15 +1113,20 @@ def read_config_file(
return data
except StopIteration:
raise ConfigFileError(f"Config file is empty or is not a valid YAML dict: {filename}")
except FileNotFoundError:
# Ignore nonexistent files.
tty.debug(f"Skipping nonexistent config path {path}", level=3)
return None
except OSError as e:
raise ConfigFileError(f"Path is not a file or is not readable: {path}: {str(e)}") from e
except StopIteration as e:
raise ConfigFileError(f"Config file is empty or is not a valid YAML dict: {path}") from e
except syaml.SpackYAMLError as e:
raise ConfigFileError(str(e)) from e
except OSError as e:
raise ConfigFileError(f"Error reading configuration file {filename}: {str(e)}") from e
def _override(string: str) -> bool:
"""Test if a spack YAML string is an override.

View File

@@ -14,12 +14,14 @@
import llnl.util.tty as tty
import spack.cmd
import spack.compilers
import spack.deptypes as dt
import spack.error
import spack.hash_types as hash_types
import spack.platforms
import spack.repo
import spack.spec
import spack.store
from spack.schema.cray_manifest import schema as manifest_schema
#: Cray systems can store a Spack-compatible description of system
@@ -237,7 +239,7 @@ def read(path, apply_updates):
tty.debug(f"Include this\n{traceback.format_exc()}")
if apply_updates:
for spec in specs.values():
spack.store.STORE.db.add(spec, directory_layout=None)
spack.store.STORE.db.add(spec)
class ManifestValidationError(spack.error.SpackError):

View File

@@ -59,7 +59,11 @@
import spack.util.lock as lk
import spack.util.spack_json as sjson
import spack.version as vn
from spack.directory_layout import DirectoryLayoutError, InconsistentInstallDirectoryError
from spack.directory_layout import (
DirectoryLayout,
DirectoryLayoutError,
InconsistentInstallDirectoryError,
)
from spack.error import SpackError
from spack.util.crypto import bit_length
@@ -208,7 +212,7 @@ def __init__(
ref_count: int = 0,
explicit: bool = False,
installation_time: Optional[float] = None,
deprecated_for: Optional["spack.spec.Spec"] = None,
deprecated_for: Optional[str] = None,
in_buildcache: bool = False,
origin=None,
):
@@ -595,9 +599,11 @@ class Database:
def __init__(
self,
root: str,
*,
upstream_dbs: Optional[List["Database"]] = None,
is_upstream: bool = False,
lock_cfg: LockConfiguration = DEFAULT_LOCK_CFG,
layout: Optional[DirectoryLayout] = None,
) -> None:
"""Database for Spack installations.
@@ -620,6 +626,7 @@ def __init__(
"""
self.root = root
self.database_directory = os.path.join(self.root, _DB_DIRNAME)
self.layout = layout
# Set up layout of database files within the db dir
self._index_path = os.path.join(self.database_directory, "index.json")
@@ -664,14 +671,6 @@ def __init__(
self.upstream_dbs = list(upstream_dbs) if upstream_dbs else []
# whether there was an error at the start of a read transaction
self._error = None
# For testing: if this is true, an exception is thrown when missing
# dependencies are detected (rather than just printing a warning
# message)
self._fail_when_missing_deps = False
self._write_transaction_impl = lk.WriteTransaction
self._read_transaction_impl = lk.ReadTransaction
@@ -774,7 +773,13 @@ def query_local_by_spec_hash(self, hash_key):
with self.read_transaction():
return self._data.get(hash_key, None)
def _assign_dependencies(self, spec_reader, hash_key, installs, data):
def _assign_dependencies(
self,
spec_reader: Type["spack.spec.SpecfileReaderBase"],
hash_key: str,
installs: dict,
data: Dict[str, InstallRecord],
):
# Add dependencies from other records in the install DB to
# form a full spec.
spec = data[hash_key].spec
@@ -787,26 +792,20 @@ def _assign_dependencies(self, spec_reader, hash_key, installs, data):
for dname, dhash, dtypes, _, virtuals in spec_reader.read_specfile_dep_specs(
yaml_deps
):
# It is important that we always check upstream installations
# in the same order, and that we always check the local
# installation first: if a downstream Spack installs a package
# then dependents in that installation could be using it.
# If a hash is installed locally and upstream, there isn't
# enough information to determine which one a local package
# depends on, so the convention ensures that this isn't an
# issue.
upstream, record = self.query_by_spec_hash(dhash, data=data)
# It is important that we always check upstream installations in the same order,
# and that we always check the local installation first: if a downstream Spack
# installs a package then dependents in that installation could be using it. If a
# hash is installed locally and upstream, there isn't enough information to
# determine which one a local package depends on, so the convention ensures that
# this isn't an issue.
_, record = self.query_by_spec_hash(dhash, data=data)
child = record.spec if record else None
if not child:
msg = "Missing dependency not in database: " "%s needs %s-%s" % (
spec.cformat("{name}{/hash:7}"),
dname,
dhash[:7],
tty.warn(
f"Missing dependency not in database: "
f"{spec.cformat('{name}{/hash:7}')} needs {dname}-{dhash[:7]}"
)
if self._fail_when_missing_deps:
raise MissingDependenciesError(msg)
tty.warn(msg)
continue
spec._add_dependency(child, depflag=dt.canonicalize(dtypes), virtuals=virtuals)
@@ -873,8 +872,8 @@ def invalid_record(hash_key, error):
# (i.e., its specs are a true Merkle DAG, unlike most specs.)
# Pass 1: Iterate through database and build specs w/o dependencies
data = {}
installed_prefixes = set()
data: Dict[str, InstallRecord] = {}
installed_prefixes: Set[str] = set()
for hash_key, rec in installs.items():
try:
# This constructs a spec DAG from the list of all installs
@@ -911,7 +910,7 @@ def invalid_record(hash_key, error):
self._data = data
self._installed_prefixes = installed_prefixes
def reindex(self, directory_layout):
def reindex(self):
"""Build database index from scratch based on a directory layout.
Locks the DB if it isn't locked already.
@@ -919,6 +918,8 @@ def reindex(self, directory_layout):
if self.is_upstream:
raise UpstreamDatabaseLockingError("Cannot reindex an upstream database")
error: Optional[CorruptDatabaseError] = None
# Special transaction to avoid recursive reindex calls and to
# ignore errors if we need to rebuild a corrupt database.
def _read_suppress_error():
@@ -926,7 +927,8 @@ def _read_suppress_error():
if os.path.isfile(self._index_path):
self._read_from_file(self._index_path)
except CorruptDatabaseError as e:
self._error = e
nonlocal error
error = e
self._data = {}
self._installed_prefixes = set()
@@ -935,14 +937,13 @@ def _read_suppress_error():
)
with transaction:
if self._error:
tty.warn("Spack database was corrupt. Will rebuild. Error was:", str(self._error))
self._error = None
if error is not None:
tty.warn(f"Spack database was corrupt. Will rebuild. Error was: {error}")
old_data = self._data
old_installed_prefixes = self._installed_prefixes
try:
self._construct_from_directory_layout(directory_layout, old_data)
self._construct_from_directory_layout(old_data)
except BaseException:
# If anything explodes, restore old data, skip write.
self._data = old_data
@@ -950,13 +951,16 @@ def _read_suppress_error():
raise
def _construct_entry_from_directory_layout(
self, directory_layout, old_data, spec, deprecator=None
self,
old_data: Dict[str, InstallRecord],
spec: "spack.spec.Spec",
deprecator: Optional["spack.spec.Spec"] = None,
):
# Try to recover explicit value from old DB, but
# default it to True if DB was corrupt. This is
# just to be conservative in case a command like
# "autoremove" is run by the user after a reindex.
tty.debug("RECONSTRUCTING FROM SPEC.YAML: {0}".format(spec))
tty.debug(f"Reconstructing from spec file: {spec}")
explicit = True
inst_time = os.stat(spec.prefix).st_ctime
if old_data is not None:
@@ -965,18 +969,17 @@ def _construct_entry_from_directory_layout(
explicit = old_info.explicit
inst_time = old_info.installation_time
extra_args = {"explicit": explicit, "installation_time": inst_time}
self._add(spec, directory_layout, **extra_args)
self._add(spec, explicit=explicit, installation_time=inst_time)
if deprecator:
self._deprecate(spec, deprecator)
def _construct_from_directory_layout(self, directory_layout, old_data):
# Read first the `spec.yaml` files in the prefixes. They should be
# considered authoritative with respect to DB reindexing, as
# entries in the DB may be corrupted in a way that still makes
# them readable. If we considered DB entries authoritative
# instead, we would perpetuate errors over a reindex.
with directory_layout.disable_upstream_check():
def _construct_from_directory_layout(self, old_data: Dict[str, InstallRecord]):
# Read first the spec files in the prefixes. They should be considered authoritative with
# respect to DB reindexing, as entries in the DB may be corrupted in a way that still makes
# them readable. If we considered DB entries authoritative instead, we would perpetuate
# errors over a reindex.
assert self.layout is not None, "Cannot reindex a database without a known layout"
with self.layout.disable_upstream_check():
# Initialize data in the reconstructed DB
self._data = {}
self._installed_prefixes = set()
@@ -984,44 +987,36 @@ def _construct_from_directory_layout(self, directory_layout, old_data):
# Start inspecting the installed prefixes
processed_specs = set()
for spec in directory_layout.all_specs():
self._construct_entry_from_directory_layout(directory_layout, old_data, spec)
for spec in self.layout.all_specs():
self._construct_entry_from_directory_layout(old_data, spec)
processed_specs.add(spec)
for spec, deprecator in directory_layout.all_deprecated_specs():
self._construct_entry_from_directory_layout(
directory_layout, old_data, spec, deprecator
)
for spec, deprecator in self.layout.all_deprecated_specs():
self._construct_entry_from_directory_layout(old_data, spec, deprecator)
processed_specs.add(spec)
for key, entry in old_data.items():
# We already took care of this spec using
# `spec.yaml` from its prefix.
for entry in old_data.values():
# We already took care of this spec using spec file from its prefix.
if entry.spec in processed_specs:
msg = "SKIPPING RECONSTRUCTION FROM OLD DB: {0}"
msg += " [already reconstructed from spec.yaml]"
tty.debug(msg.format(entry.spec))
tty.debug(
f"Skipping reconstruction from old db: {entry.spec}"
" [already reconstructed from spec file]"
)
continue
# If we arrived here it very likely means that
# we have external specs that are not dependencies
# of other specs. This may be the case for externally
# installed compilers or externally installed
# applications.
tty.debug("RECONSTRUCTING FROM OLD DB: {0}".format(entry.spec))
# If we arrived here it very likely means that we have external specs that are not
# dependencies of other specs. This may be the case for externally installed
# compilers or externally installed applications.
tty.debug(f"Reconstructing from old db: {entry.spec}")
try:
layout = None if entry.spec.external else directory_layout
kwargs = {
"spec": entry.spec,
"directory_layout": layout,
"explicit": entry.explicit,
"installation_time": entry.installation_time,
}
self._add(**kwargs)
self._add(
spec=entry.spec,
explicit=entry.explicit,
installation_time=entry.installation_time,
)
processed_specs.add(entry.spec)
except Exception as e:
# Something went wrong, so the spec was not restored
# from old data
# Something went wrong, so the spec was not restored from old data
tty.debug(e)
self._check_ref_counts()
@@ -1033,7 +1028,7 @@ def _check_ref_counts(self):
Does no locking.
"""
counts = {}
counts: Dict[str, int] = {}
for key, rec in self._data.items():
counts.setdefault(key, 0)
for dep in rec.spec.dependencies(deptype=_TRACKED_DEPENDENCIES):
@@ -1117,29 +1112,23 @@ def _read(self):
def _add(
self,
spec,
directory_layout=None,
explicit=False,
installation_time=None,
allow_missing=False,
spec: "spack.spec.Spec",
explicit: bool = False,
installation_time: Optional[float] = None,
allow_missing: bool = False,
):
"""Add an install record for this spec to the database.
Assumes spec is installed in ``directory_layout.path_for_spec(spec)``.
Also ensures dependencies are present and updated in the DB as
either installed or missing.
Also ensures dependencies are present and updated in the DB as either installed or missing.
Args:
spec (spack.spec.Spec): spec to be added
directory_layout: layout of the spec installation
spec: spec to be added
explicit:
Possible values: True, False, any
A spec that was installed following a specific user
request is marked as explicit. If instead it was
pulled-in as a dependency of a user requested spec
it's considered implicit.
A spec that was installed following a specific user request is marked as explicit.
If instead it was pulled-in as a dependency of a user requested spec it's
considered implicit.
installation_time:
Date and time of installation
@@ -1150,48 +1139,42 @@ def _add(
raise NonConcreteSpecAddError("Specs added to DB must be concrete.")
key = spec.dag_hash()
spec_pkg_hash = spec._package_hash
spec_pkg_hash = spec._package_hash # type: ignore[attr-defined]
upstream, record = self.query_by_spec_hash(key)
if upstream:
return
# Retrieve optional arguments
installation_time = installation_time or _now()
for edge in spec.edges_to_dependencies(depflag=_TRACKED_DEPENDENCIES):
if edge.spec.dag_hash() in self._data:
continue
# allow missing build-only deps. This prevents excessive
# warnings when a spec is installed, and its build dep
# is missing a build dep; there's no need to install the
# build dep's build dep first, and there's no need to warn
# about it missing.
dep_allow_missing = allow_missing or edge.depflag == dt.BUILD
self._add(
edge.spec,
directory_layout,
explicit=False,
installation_time=installation_time,
allow_missing=dep_allow_missing,
# allow missing build-only deps. This prevents excessive warnings when a spec is
# installed, and its build dep is missing a build dep; there's no need to install
# the build dep's build dep first, and there's no need to warn about it missing.
allow_missing=allow_missing or edge.depflag == dt.BUILD,
)
# Make sure the directory layout agrees whether the spec is installed
if not spec.external and directory_layout:
path = directory_layout.path_for_spec(spec)
if not spec.external and self.layout:
path = self.layout.path_for_spec(spec)
installed = False
try:
directory_layout.ensure_installed(spec)
self.layout.ensure_installed(spec)
installed = True
self._installed_prefixes.add(path)
except DirectoryLayoutError as e:
if not (allow_missing and isinstance(e, InconsistentInstallDirectoryError)):
msg = (
"{0} is being {1} in the database with prefix {2}, "
"but this directory does not contain an installation of "
"the spec, due to: {3}"
)
action = "updated" if key in self._data else "registered"
tty.warn(msg.format(spec.short_spec, action, path, str(e)))
tty.warn(
f"{spec.short_spec} is being {action} in the database with prefix {path}, "
"but this directory does not contain an installation of "
f"the spec, due to: {e}"
)
elif spec.external_path:
path = spec.external_path
installed = True
@@ -1202,23 +1185,27 @@ def _add(
if key not in self._data:
# Create a new install record with no deps initially.
new_spec = spec.copy(deps=False)
extra_args = {"explicit": explicit, "installation_time": installation_time}
# Commands other than 'spack install' may add specs to the DB,
# we can record the source of an installed Spec with 'origin'
if hasattr(spec, "origin"):
extra_args["origin"] = spec.origin
self._data[key] = InstallRecord(new_spec, path, installed, ref_count=0, **extra_args)
self._data[key] = InstallRecord(
new_spec,
path=path,
installed=installed,
ref_count=0,
explicit=explicit,
installation_time=installation_time,
origin=None if not hasattr(spec, "origin") else spec.origin,
)
# Connect dependencies from the DB to the new copy.
for dep in spec.edges_to_dependencies(depflag=_TRACKED_DEPENDENCIES):
dkey = dep.spec.dag_hash()
upstream, record = self.query_by_spec_hash(dkey)
assert record, f"Missing dependency {dep.spec} in DB"
new_spec._add_dependency(record.spec, depflag=dep.depflag, virtuals=dep.virtuals)
if not upstream:
record.ref_count += 1
# Mark concrete once everything is built, and preserve
# the original hashes of concrete specs.
# Mark concrete once everything is built, and preserve the original hashes of concrete
# specs.
new_spec._mark_concrete()
new_spec._hash = key
new_spec._package_hash = spec_pkg_hash
@@ -1231,7 +1218,7 @@ def _add(
self._data[key].explicit = explicit
@_autospec
def add(self, spec, directory_layout, explicit=False):
def add(self, spec: "spack.spec.Spec", *, explicit: bool = False) -> None:
"""Add spec at path to database, locking and reading DB to sync.
``add()`` will lock and read from the DB on disk.
@@ -1240,9 +1227,9 @@ def add(self, spec, directory_layout, explicit=False):
# TODO: ensure that spec is concrete?
# Entire add is transactional.
with self.write_transaction():
self._add(spec, directory_layout, explicit=explicit)
self._add(spec, explicit=explicit)
def _get_matching_spec_key(self, spec, **kwargs):
def _get_matching_spec_key(self, spec: "spack.spec.Spec", **kwargs) -> str:
"""Get the exact spec OR get a single spec that matches."""
key = spec.dag_hash()
upstream, record = self.query_by_spec_hash(key)
@@ -1254,12 +1241,12 @@ def _get_matching_spec_key(self, spec, **kwargs):
return key
@_autospec
def get_record(self, spec, **kwargs):
def get_record(self, spec: "spack.spec.Spec", **kwargs) -> Optional[InstallRecord]:
key = self._get_matching_spec_key(spec, **kwargs)
upstream, record = self.query_by_spec_hash(key)
return record
def _decrement_ref_count(self, spec):
def _decrement_ref_count(self, spec: "spack.spec.Spec") -> None:
key = spec.dag_hash()
if key not in self._data:
@@ -1276,7 +1263,7 @@ def _decrement_ref_count(self, spec):
for dep in spec.dependencies(deptype=_TRACKED_DEPENDENCIES):
self._decrement_ref_count(dep)
def _increment_ref_count(self, spec):
def _increment_ref_count(self, spec: "spack.spec.Spec") -> None:
key = spec.dag_hash()
if key not in self._data:
@@ -1285,14 +1272,14 @@ def _increment_ref_count(self, spec):
rec = self._data[key]
rec.ref_count += 1
def _remove(self, spec):
def _remove(self, spec: "spack.spec.Spec") -> "spack.spec.Spec":
"""Non-locking version of remove(); does real work."""
key = self._get_matching_spec_key(spec)
rec = self._data[key]
# This install prefix is now free for other specs to use, even if the
# spec is only marked uninstalled.
if not rec.spec.external and rec.installed:
if not rec.spec.external and rec.installed and rec.path:
self._installed_prefixes.remove(rec.path)
if rec.ref_count > 0:
@@ -1316,7 +1303,7 @@ def _remove(self, spec):
return rec.spec
@_autospec
def remove(self, spec):
def remove(self, spec: "spack.spec.Spec") -> "spack.spec.Spec":
"""Removes a spec from the database. To be called on uninstall.
Reads the database, then:
@@ -1331,7 +1318,7 @@ def remove(self, spec):
with self.write_transaction():
return self._remove(spec)
def deprecator(self, spec):
def deprecator(self, spec: "spack.spec.Spec") -> Optional["spack.spec.Spec"]:
"""Return the spec that the given spec is deprecated for, or None"""
with self.read_transaction():
spec_key = self._get_matching_spec_key(spec)
@@ -1342,14 +1329,14 @@ def deprecator(self, spec):
else:
return None
def specs_deprecated_by(self, spec):
def specs_deprecated_by(self, spec: "spack.spec.Spec") -> List["spack.spec.Spec"]:
"""Return all specs deprecated in favor of the given spec"""
with self.read_transaction():
return [
rec.spec for rec in self._data.values() if rec.deprecated_for == spec.dag_hash()
]
def _deprecate(self, spec, deprecator):
def _deprecate(self, spec: "spack.spec.Spec", deprecator: "spack.spec.Spec") -> None:
spec_key = self._get_matching_spec_key(spec)
spec_rec = self._data[spec_key]
@@ -1367,17 +1354,17 @@ def _deprecate(self, spec, deprecator):
self._data[spec_key] = spec_rec
@_autospec
def mark(self, spec, key, value):
def mark(self, spec: "spack.spec.Spec", key, value) -> None:
"""Mark an arbitrary record on a spec."""
with self.write_transaction():
return self._mark(spec, key, value)
def _mark(self, spec, key, value):
def _mark(self, spec: "spack.spec.Spec", key, value) -> None:
record = self._data[self._get_matching_spec_key(spec)]
setattr(record, key, value)
@_autospec
def deprecate(self, spec, deprecator):
def deprecate(self, spec: "spack.spec.Spec", deprecator: "spack.spec.Spec") -> None:
"""Marks a spec as deprecated in favor of its deprecator"""
with self.write_transaction():
return self._deprecate(spec, deprecator)
@@ -1385,16 +1372,16 @@ def deprecate(self, spec, deprecator):
@_autospec
def installed_relatives(
self,
spec,
direction="children",
transitive=True,
spec: "spack.spec.Spec",
direction: str = "children",
transitive: bool = True,
deptype: Union[dt.DepFlag, dt.DepTypes] = dt.ALL,
):
) -> Set["spack.spec.Spec"]:
"""Return installed specs related to this one."""
if direction not in ("parents", "children"):
raise ValueError("Invalid direction: %s" % direction)
relatives = set()
relatives: Set[spack.spec.Spec] = set()
for spec in self.query(spec):
if transitive:
to_add = spec.traverse(direction=direction, root=False, deptype=deptype)
@@ -1405,17 +1392,13 @@ def installed_relatives(
for relative in to_add:
hash_key = relative.dag_hash()
upstream, record = self.query_by_spec_hash(hash_key)
_, record = self.query_by_spec_hash(hash_key)
if not record:
reltype = "Dependent" if direction == "parents" else "Dependency"
msg = "Inconsistent state! %s %s of %s not in DB" % (
reltype,
hash_key,
spec.dag_hash(),
tty.warn(
f"Inconsistent state: "
f"{'dependent' if direction == 'parents' else 'dependency'} {hash_key} of "
f"{spec.dag_hash()} not in DB"
)
if self._fail_when_missing_deps:
raise MissingDependenciesError(msg)
tty.warn(msg)
continue
if not record.installed:
@@ -1425,7 +1408,7 @@ def installed_relatives(
return relatives
@_autospec
def installed_extensions_for(self, extendee_spec):
def installed_extensions_for(self, extendee_spec: "spack.spec.Spec"):
"""Returns the specs of all packages that extend the given spec"""
for spec in self.query():
if spec.package.extends(extendee_spec):
@@ -1684,7 +1667,7 @@ def unused_specs(
self,
root_hashes: Optional[Container[str]] = None,
deptype: Union[dt.DepFlag, dt.DepTypes] = dt.LINK | dt.RUN,
) -> "List[spack.spec.Spec]":
) -> List["spack.spec.Spec"]:
"""Return all specs that are currently installed but not needed by root specs.
By default, roots are all explicit specs in the database. If a set of root

View File

@@ -2,17 +2,11 @@
# Spack Project Developers. See the top-level COPYRIGHT file for details.
#
# SPDX-License-Identifier: (Apache-2.0 OR MIT)
from .common import (
DetectedPackage,
executable_prefix,
set_virtuals_nonbuildable,
update_configuration,
)
from .common import executable_prefix, set_virtuals_nonbuildable, update_configuration
from .path import by_path, executables_in_path
from .test import detection_tests
__all__ = [
"DetectedPackage",
"by_path",
"executables_in_path",
"executable_prefix",

View File

@@ -6,9 +6,9 @@
function to update packages.yaml given a list of detected packages.
Ideally, each detection method should be placed in a specific subpackage
and implement at least a function that returns a list of DetectedPackage
objects. The update in packages.yaml can then be done using the function
provided here.
and implement at least a function that returns a list of specs.
The update in packages.yaml can then be done using the function provided here.
The module also contains other functions that might be useful across different
detection mechanisms.
@@ -17,9 +17,10 @@
import itertools
import os
import os.path
import pathlib
import re
import sys
from typing import Dict, List, NamedTuple, Optional, Set, Tuple, Union
from typing import Dict, List, Optional, Set, Tuple, Union
import llnl.util.tty
@@ -30,25 +31,6 @@
import spack.util.windows_registry
class DetectedPackage(NamedTuple):
"""Information on a package that has been detected."""
#: Spec that was detected
spec: spack.spec.Spec
#: Prefix of the spec
prefix: str
def __reduce__(self):
return DetectedPackage.restore, (str(self.spec), self.prefix, self.spec.extra_attributes)
@staticmethod
def restore(
spec_str: str, prefix: str, extra_attributes: Optional[Dict[str, str]]
) -> "DetectedPackage":
spec = spack.spec.Spec.from_detection(spec_str=spec_str, extra_attributes=extra_attributes)
return DetectedPackage(spec=spec, prefix=prefix)
def _externals_in_packages_yaml() -> Set[spack.spec.Spec]:
"""Returns all the specs mentioned as externals in packages.yaml"""
packages_yaml = spack.config.get("packages")
@@ -63,7 +45,7 @@ def _externals_in_packages_yaml() -> Set[spack.spec.Spec]:
def _pkg_config_dict(
external_pkg_entries: List[DetectedPackage],
external_pkg_entries: List["spack.spec.Spec"],
) -> Dict[str, Union[bool, List[Dict[str, ExternalEntryType]]]]:
"""Generate a package specific config dict according to the packages.yaml schema.
@@ -83,22 +65,19 @@ def _pkg_config_dict(
pkg_dict = spack.util.spack_yaml.syaml_dict()
pkg_dict["externals"] = []
for e in external_pkg_entries:
if not _spec_is_valid(e.spec):
if not _spec_is_valid(e):
continue
external_items: List[Tuple[str, ExternalEntryType]] = [
("spec", str(e.spec)),
("prefix", e.prefix),
("spec", str(e)),
("prefix", pathlib.Path(e.external_path).as_posix()),
]
if e.spec.external_modules:
external_items.append(("modules", e.spec.external_modules))
if e.external_modules:
external_items.append(("modules", e.external_modules))
if e.spec.extra_attributes:
if e.extra_attributes:
external_items.append(
(
"extra_attributes",
spack.util.spack_yaml.syaml_dict(e.spec.extra_attributes.items()),
)
("extra_attributes", spack.util.spack_yaml.syaml_dict(e.extra_attributes.items()))
)
# external_items.extend(e.spec.extra_attributes.items())
@@ -136,10 +115,10 @@ def path_to_dict(search_paths: List[str]):
# entry overrides later entries
for search_path in reversed(search_paths):
try:
for lib in os.listdir(search_path):
lib_path = os.path.join(search_path, lib)
if llnl.util.filesystem.is_readable_file(lib_path):
path_to_lib[lib_path] = lib
with os.scandir(search_path) as entries:
path_to_lib.update(
{entry.path: entry.name for entry in entries if entry.is_file()}
)
except OSError as e:
msg = f"cannot scan '{search_path}' for external software: {str(e)}"
llnl.util.tty.debug(msg)
@@ -219,33 +198,32 @@ def library_prefix(library_dir: str) -> str:
def update_configuration(
detected_packages: Dict[str, List[DetectedPackage]],
detected_packages: Dict[str, List["spack.spec.Spec"]],
scope: Optional[str] = None,
buildable: bool = True,
) -> List[spack.spec.Spec]:
"""Add the packages passed as arguments to packages.yaml
Args:
detected_packages: list of DetectedPackage objects to be added
detected_packages: list of specs to be added
scope: configuration scope where to add the detected packages
buildable: whether the detected packages are buildable or not
"""
predefined_external_specs = _externals_in_packages_yaml()
pkg_to_cfg, all_new_specs = {}, []
for package_name, entries in detected_packages.items():
new_entries = [e for e in entries if (e.spec not in predefined_external_specs)]
new_entries = [s for s in entries if s not in predefined_external_specs]
pkg_config = _pkg_config_dict(new_entries)
external_entries = pkg_config.get("externals", [])
assert not isinstance(external_entries, bool), "unexpected value for external entry"
all_new_specs.extend([spack.spec.Spec(x["spec"]) for x in external_entries])
all_new_specs.extend(new_entries)
if buildable is False:
pkg_config["buildable"] = False
pkg_to_cfg[package_name] = pkg_config
pkgs_cfg = spack.config.get("packages", scope=scope)
pkgs_cfg = spack.config.merge_yaml(pkgs_cfg, pkg_to_cfg)
spack.config.set("packages", pkgs_cfg, scope=scope)

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