fix

* e4s cray rhel ci stack: re-enable and update for new cpe, should fix cray libsci issue

* only run e4s-cray-rhel stack

* Mkae Autotools build_system point at correct build_directory

* remove selective enable of cray-rhel stacks

* restore SPACK_CI_DISABLE_STACKS

* use dot prefix to hide cray-sles jobs instead of comment-out

---------

Co-authored-by: Ryan Krattiger <ryan.krattiger@kitware.com>

lib/spack/docs/conf.py

@@ -206,6 +206,7 @@ def setup(sphinx):
     ("py:class", "TextIO"),
     ("py:class", "hashlib._Hash"),
     ("py:class", "concurrent.futures._base.Executor"),
+    ("py:class", "jsonschema.exceptions.ValidationError"),
     # Spack classes that are private and we don't want to expose
     ("py:class", "spack.provider_index._IndexBase"),
     ("py:class", "spack.repo._PrependFileLoader"),

lib/spack/spack/build_systems/cargo.py

@@ -71,13 +71,16 @@ def build_directory(self):
     @property
     def build_args(self):
         """Arguments for ``cargo build``."""
-        return []
+        return ["-j", str(self.pkg.module.make_jobs)]
 
     @property
     def check_args(self):
         """Argument for ``cargo test`` during check phase"""
         return []
 
+    def setup_build_environment(self, env):
+        env.set("CARGO_HOME", self.stage.path)
+
     def build(self, pkg, spec, prefix):
         """Runs ``cargo install`` in the source directory"""
         with fs.working_dir(self.build_directory):

lib/spack/spack/cmd/__init__.py

@@ -171,7 +171,9 @@ def quote_kvp(string: str) -> str:
 
 
 def parse_specs(
-    args: Union[str, List[str]], concretize: bool = False, tests: bool = False
+    args: Union[str, List[str]],
+    concretize: bool = False,
+    tests: spack.concretize.TestsType = False,
 ) -> List[spack.spec.Spec]:
     """Convenience function for parsing arguments from specs.  Handles common
     exceptions and dies if there are errors.
@@ -183,11 +185,13 @@ def parse_specs(
     if not concretize:
         return specs
 
-    to_concretize = [(s, None) for s in specs]
+    to_concretize: List[spack.concretize.SpecPairInput] = [(s, None) for s in specs]
     return _concretize_spec_pairs(to_concretize, tests=tests)
 
 
-def _concretize_spec_pairs(to_concretize, tests=False):
+def _concretize_spec_pairs(
+    to_concretize: List[spack.concretize.SpecPairInput], tests: spack.concretize.TestsType = False
+) -> List[spack.spec.Spec]:
     """Helper method that concretizes abstract specs from a list of abstract,concrete pairs.
 
     Any spec with a concrete spec associated with it will concretize to that spec. Any spec
@@ -198,7 +202,7 @@ def _concretize_spec_pairs(to_concretize, tests=False):
     # Special case for concretizing a single spec
     if len(to_concretize) == 1:
         abstract, concrete = to_concretize[0]
-        return [concrete or abstract.concretized()]
+        return [concrete or abstract.concretized(tests=tests)]
 
     # Special case if every spec is either concrete or has an abstract hash
     if all(

lib/spack/spack/compiler.py

@@ -749,12 +749,18 @@ def __init__(self, compiler, feature, flag_name, ver_string=None):
 class CompilerCacheEntry:
     """Deserialized cache entry for a compiler"""
 
-    __slots__ = ["c_compiler_output", "real_version"]
+    __slots__ = ("c_compiler_output", "real_version")
 
     def __init__(self, c_compiler_output: Optional[str], real_version: str):
         self.c_compiler_output = c_compiler_output
         self.real_version = real_version
 
+    @property
+    def empty(self) -> bool:
+        """Sometimes the compiler is temporarily broken, preventing us from getting output. The
+        call site determines if that is a problem."""
+        return self.c_compiler_output is None
+
     @classmethod
     def from_dict(cls, data: Dict[str, Optional[str]]):
         if not isinstance(data, dict):
@@ -792,9 +798,10 @@ def __init__(self, cache: "FileCache") -> None:
         self.cache.init_entry(self.name)
         self._data: Dict[str, Dict[str, Optional[str]]] = {}
 
-    def _get_entry(self, key: str) -> Optional[CompilerCacheEntry]:
+    def _get_entry(self, key: str, *, allow_empty: bool) -> Optional[CompilerCacheEntry]:
         try:
-            return CompilerCacheEntry.from_dict(self._data[key])
+            entry = CompilerCacheEntry.from_dict(self._data[key])
+            return entry if allow_empty or not entry.empty else None
         except ValueError:
             del self._data[key]
         except KeyError:
@@ -812,7 +819,7 @@ def get(self, compiler: Compiler) -> CompilerCacheEntry:
             self._data = {}
 
         key = self._key(compiler)
-        value = self._get_entry(key)
+        value = self._get_entry(key, allow_empty=False)
         if value is not None:
             return value
 
@@ -826,7 +833,7 @@ def get(self, compiler: Compiler) -> CompilerCacheEntry:
                 self._data = {}
 
             # Use cache entry that may have been created by another process in the meantime.
-            entry = self._get_entry(key)
+            entry = self._get_entry(key, allow_empty=True)
 
             # Finally compute the cache entry
             if entry is None:

lib/spack/spack/concretize.py

@@ -5,7 +5,7 @@
 import sys
 import time
 from contextlib import contextmanager
-from typing import Iterable, Optional, Sequence, Tuple, Union
+from typing import Iterable, List, Optional, Sequence, Tuple, Union
 
 import llnl.util.tty as tty
 
@@ -35,6 +35,7 @@ def enable_compiler_existence_check():
     CHECK_COMPILER_EXISTENCE = saved
 
 
+SpecPairInput = Tuple[Spec, Optional[Spec]]
 SpecPair = Tuple[Spec, Spec]
 SpecLike = Union[Spec, str]
 TestsType = Union[bool, Iterable[str]]
@@ -59,8 +60,8 @@ def concretize_specs_together(
 
 
 def concretize_together(
-    spec_list: Sequence[SpecPair], tests: TestsType = False
-) -> Sequence[SpecPair]:
+    spec_list: Sequence[SpecPairInput], tests: TestsType = False
+) -> List[SpecPair]:
     """Given a number of specs as input, tries to concretize them together.
 
     Args:
@@ -76,8 +77,8 @@ def concretize_together(
 
 
 def concretize_together_when_possible(
-    spec_list: Sequence[SpecPair], tests: TestsType = False
-) -> Sequence[SpecPair]:
+    spec_list: Sequence[SpecPairInput], tests: TestsType = False
+) -> List[SpecPair]:
     """Given a number of specs as input, tries to concretize them together to the extent possible.
 
     See documentation for ``unify: when_possible`` concretization for the precise definition of
@@ -113,8 +114,8 @@ def concretize_together_when_possible(
 
 
 def concretize_separately(
-    spec_list: Sequence[SpecPair], tests: TestsType = False
-) -> Sequence[SpecPair]:
+    spec_list: Sequence[SpecPairInput], tests: TestsType = False
+) -> List[SpecPair]:
     """Concretizes the input specs separately from each other.
 
     Args:

lib/spack/spack/config.py

@@ -34,8 +34,11 @@
 import os
 import re
 import sys
+import warnings
 from typing import Any, Callable, Dict, Generator, List, Optional, Tuple, Union
 
+import jsonschema
+
 from llnl.util import filesystem, lang, tty
 
 import spack.error
@@ -951,12 +954,6 @@ def set(path: str, value: Any, scope: Optional[str] = None) -> None:
     return CONFIG.set(path, value, scope)
 
 
-def add_default_platform_scope(platform: str) -> None:
-    plat_name = os.path.join("defaults", platform)
-    plat_path = os.path.join(CONFIGURATION_DEFAULTS_PATH[1], platform)
-    CONFIG.push_scope(DirectoryConfigScope(plat_name, plat_path))
-
-
 def scopes() -> Dict[str, ConfigScope]:
     """Convenience function to get list of configuration scopes."""
     return CONFIG.scopes
@@ -1054,7 +1051,6 @@ def validate(
     This leverages the line information (start_mark, end_mark) stored
     on Spack YAML structures.
     """
-    import jsonschema
 
     try:
         spack.schema.Validator(schema).validate(data)
@@ -1063,7 +1059,12 @@ def validate(
             line_number = e.instance.lc.line + 1
         else:
             line_number = None
-        raise ConfigFormatError(e, data, filename, line_number) from e
+        exception = ConfigFormatError(e, data, filename, line_number)
+
+        if isinstance(e, spack.schema.NonFatalValidationError):
+            warnings.warn(str(exception))
+        else:
+            raise exception from e
     # return the validated data so that we can access the raw data
     # mostly relevant for environments
     return data

lib/spack/spack/container/__init__.py

@@ -6,6 +6,8 @@
 """
 import warnings
 
+import jsonschema
+
 import spack.environment as ev
 import spack.schema.env as env
 import spack.util.spack_yaml as syaml
@@ -30,7 +32,6 @@ def validate(configuration_file):
     Returns:
         A sanitized copy of the configuration stored in the input file
     """
-    import jsonschema
 
     with open(configuration_file, encoding="utf-8") as f:
         config = syaml.load(f)

lib/spack/spack/error.py

@@ -15,6 +15,10 @@
 SHOW_BACKTRACE = False
 
 
+class SpackAPIWarning(UserWarning):
+    """Warning that formats with file and line number."""
+
+
 class SpackError(Exception):
     """This is the superclass for all Spack errors.
     Subclasses can be found in the modules they have to do with.

lib/spack/spack/main.py

@@ -503,9 +503,12 @@ def make_argument_parser(**kwargs):
     return parser
 
 
-def send_warning_to_tty(message, *args):
+def send_warning_to_tty(message, category, filename, lineno, file=None, line=None):
     """Redirects messages to tty.warn."""
-    tty.warn(message)
+    if category is spack.error.SpackAPIWarning:
+        tty.warn(f"{filename}:{lineno}: {message}")
+    else:
+        tty.warn(message)
 
 
 def setup_main_options(args):

lib/spack/spack/schema/__init__.py

@@ -4,7 +4,10 @@
 """This module contains jsonschema files for all of Spack's YAML formats."""
 import copy
 import typing
-import warnings
+
+import jsonschema
+import jsonschema.exceptions
+import jsonschema.validators
 
 import llnl.util.lang
 
@@ -16,14 +19,14 @@ class DeprecationMessage(typing.NamedTuple):
     error: bool
 
 
-# jsonschema is imported lazily as it is heavy to import
-# and increases the start-up time
+class NonFatalValidationError(jsonschema.exceptions.ValidationError):
+    """A validation error that should only produce a warning."""
+
+
 def _make_validator():
-    import jsonschema
 
     def _validate_spec(validator, is_spec, instance, schema):
         """Check if the attributes on instance are valid specs."""
-        import jsonschema
 
         import spack.spec_parser
 
@@ -56,15 +59,18 @@ def _deprecated_properties(validator, deprecated, instance, schema):
 
         # Process issues
         errors = []
+        warnings = []
         for name in issues:
             msg = deprecations[name].message.format(name=name)
             if deprecations[name].error:
                 errors.append(msg)
             else:
-                warnings.warn(msg)
+                warnings.append(msg)
 
         if errors:
             yield jsonschema.ValidationError("\n".join(errors))
+        if warnings:
+            yield NonFatalValidationError("\n".join(warnings))
 
     return jsonschema.validators.extend(
         jsonschema.Draft4Validator,

lib/spack/spack/schema/mirrors.py

@@ -9,6 +9,8 @@
 """
 from typing import Any, Dict
 
+import jsonschema
+
 #: Common properties for connection specification
 connection = {
     "url": {"type": "string"},
@@ -102,7 +104,6 @@
 
 
 def update(data):
-    import jsonschema
 
     errors = []
 

lib/spack/spack/test/conftest.py

@@ -635,11 +635,6 @@ def ensure_debug(monkeypatch):
     tty.set_debug(current_debug_level)
 
 
-@pytest.fixture(autouse=sys.platform == "win32", scope="session")
-def platform_config():
-    spack.config.add_default_platform_scope(spack.platforms.real_host().name)
-
-
 @pytest.fixture
 def default_config():
     """Isolates the default configuration from the user configs.

lib/spack/spack/test/schema.py

@@ -105,25 +105,22 @@ def test_schema_validation(meta_schema, config_name):
 
 def test_deprecated_properties(module_suffixes_schema):
     # Test that an error is reported when 'error: True'
-    msg_fmt = r"{name} is deprecated"
     module_suffixes_schema["deprecatedProperties"] = [
-        {"names": ["tcl"], "message": msg_fmt, "error": True}
+        {"names": ["tcl"], "message": r"{name} is deprecated", "error": True}
     ]
-    v = spack.schema.Validator(module_suffixes_schema)
     data = {"tcl": {"all": {"suffixes": {"^python": "py"}}}}
 
-    expected_match = "tcl is deprecated"
-    with pytest.raises(jsonschema.ValidationError, match=expected_match):
-        v.validate(data)
+    with pytest.raises(jsonschema.ValidationError, match="tcl is deprecated") as e:
+        assert not isinstance(e, spack.schema.NonFatalValidationError)
+        spack.schema.Validator(module_suffixes_schema).validate(data)
 
-    # Test that just a warning is reported when 'error: False'
+    # Test that just a non fatal error is reported when 'error: False'
     module_suffixes_schema["deprecatedProperties"] = [
-        {"names": ["tcl"], "message": msg_fmt, "error": False}
+        {"names": ["tcl"], "message": r"{name} is deprecated", "error": False}
     ]
-    v = spack.schema.Validator(module_suffixes_schema)
-    data = {"tcl": {"all": {"suffixes": {"^python": "py"}}}}
-    # The next validation doesn't raise anymore
-    v.validate(data)
+
+    with pytest.raises(spack.schema.NonFatalValidationError, match="tcl is deprecated"):
+        spack.schema.Validator(module_suffixes_schema).validate(data)
 
 
 def test_ordereddict_merge_order():

share/spack/gitlab/cloud_pipelines/.gitlab-ci.yml

@@ -14,10 +14,10 @@ default:
   image: { "name": "ghcr.io/spack/e4s-ubuntu-18.04:v2021-10-18", "entrypoint": [""] }
 
 # CI Platform-Arch
-.cray_rhel_zen4:
+.cray_rhel_x86_64_v3:
   variables:
     SPACK_TARGET_PLATFORM: "cray-rhel"
-    SPACK_TARGET_ARCH: "zen4"
+    SPACK_TARGET_ARCH: "x86_64_v3"
 
 .cray_sles_zen4:
   variables:
@@ -884,7 +884,7 @@ aws-pcluster-build-neoverse_v1:
     - cat /proc/meminfo | grep 'MemTotal\|MemFree' || true
 
 .generate-cray-rhel:
-  tags: [ "cray-rhel-zen4", "public" ]
+  tags: [ "cray-rhel-x86_64_v3", "public" ]
   extends: [ ".generate-cray" ]
 
 .generate-cray-sles:
@@ -896,7 +896,7 @@ aws-pcluster-build-neoverse_v1:
 # E4S - Cray RHEL
 #######################################
 .e4s-cray-rhel:
-  extends: [ ".cray_rhel_zen4" ]
+  extends: [ ".cray_rhel_x86_64_v3" ]
   variables:
     SPACK_CI_STACK_NAME: e4s-cray-rhel
 
@@ -904,7 +904,6 @@ e4s-cray-rhel-generate:
   extends: [ ".generate-cray-rhel", ".e4s-cray-rhel" ]
 
 e4s-cray-rhel-build:
-  allow_failure: true  # libsci_cray.so broken, misses DT_NEEDED for libdl.so
   extends: [ ".build", ".e4s-cray-rhel" ]
   trigger:
     include:
@@ -923,10 +922,10 @@ e4s-cray-rhel-build:
   variables:
     SPACK_CI_STACK_NAME: e4s-cray-sles
 
-e4s-cray-sles-generate:
+.e4s-cray-sles-generate:
   extends: [ ".generate-cray-sles", ".e4s-cray-sles" ]
 
-e4s-cray-sles-build:
+.e4s-cray-sles-build:
   allow_failure: true  # libsci_cray.so broken, misses DT_NEEDED for libdl.so
   extends: [ ".build", ".e4s-cray-sles" ]
   trigger:

share/spack/gitlab/cloud_pipelines/configs/cray-rhel/compilers.yaml

@@ -1,31 +1,27 @@
 compilers:
 - compiler:
-    spec: cce@15.0.1
+    spec: cce@=18.0.0
     paths:
-      cc: cc
-      cxx: CC
-      f77: ftn
-      fc: ftn
+      cc: /opt/cray/pe/cce/18.0.0/bin/craycc
+      cxx: /opt/cray/pe/cce/18.0.0/bin/crayCC
+      f77: /opt/cray/pe/cce/18.0.0/bin/crayftn
+      fc: /opt/cray/pe/cce/18.0.0/bin/crayftn
     flags: {}
     operating_system: rhel8
-    target: any
-    modules:
-    - PrgEnv-cray/8.3.3
-    - cce/15.0.1
-    environment:
-      set:
-        MACHTYPE: x86_64
+    target: x86_64
+    modules: []
+    environment: {}
+    extra_rpaths: []
 - compiler:
-    spec: gcc@11.2.0
+    spec: gcc@=8.5.0
     paths:
-      cc: gcc
-      cxx: g++
-      f77: gfortran
-      fc: gfortran
+      cc: /usr/bin/gcc
+      cxx: /usr/bin/g++
+      f77: /usr/bin/gfortran
+      fc: /usr/bin/gfortran
     flags: {}
     operating_system: rhel8
-    target: any
-    modules:
-    - PrgEnv-gnu
-    - gcc/11.2.0
-    environment: {}
+    target: x86_64
+    modules: []
+    environment: {}
+    extra_rpaths: []

share/spack/gitlab/cloud_pipelines/configs/cray-rhel/packages.yaml

@@ -1,16 +1,15 @@
 packages:
-  # EXTERNALS
   cray-mpich:
     buildable: false
     externals:
-    - spec: cray-mpich@8.1.25 %cce@15.0.1
-      prefix: /opt/cray/pe/mpich/8.1.25/ofi/cray/10.0
+    - spec: cray-mpich@8.1.30 %cce
+      prefix: /opt/cray/pe/mpich/8.1.30/ofi/cray/18.0
       modules:
-      - cray-mpich/8.1.25
+      - cray-mpich/8.1.30
   cray-libsci:
     buildable: false
     externals:
-    - spec: cray-libsci@23.02.1.1 %cce@15.0.1
-      prefix: /opt/cray/pe/libsci/23.02.1.1/CRAY/9.0/x86_64/
+    - spec: cray-libsci@24.07.0 %cce
+      prefix: /opt/cray/pe/libsci/24.07.0/CRAY/18.0/x86_64/
       modules:
-      - cray-libsci/23.02.1.1
+      - cray-libsci/24.07.0

share/spack/gitlab/cloud_pipelines/configs/cray-rhel/x86_64_v3/ci.yaml

@@ -0,0 +1,4 @@
+ci:
+  pipeline-gen:
+  - build-job:
+      tags: ["cray-rhel-x86_64_v3"]

share/spack/gitlab/cloud_pipelines/configs/cray-rhel/zen4/ci.yaml

@@ -1,4 +0,0 @@
-ci:
-  pipeline-gen:
-  - build-job:
-      tags: ["cray-rhel-zen4"]

share/spack/gitlab/cloud_pipelines/stacks/e4s-cray-rhel/spack.yaml

@@ -14,8 +14,7 @@ spack:
 
   packages:
     all:
-      prefer:
-      - "%cce"
+      require: "%cce@18.0.0 target=x86_64_v3"
       compiler: [cce]
       providers:
         blas: [cray-libsci]
@@ -23,17 +22,15 @@ spack:
         mpi: [cray-mpich]
         tbb: [intel-tbb]
         scalapack: [netlib-scalapack]
-      target: [zen4]
       variants: +mpi
-
+    ncurses:
+      require: +termlib ldflags=-Wl,--undefined-version
     tbb:
       require: "intel-tbb"
     binutils:
       variants: +ld +gold +headers +libiberty ~nls
     boost:
       variants: +python +filesystem +iostreams +system
-    cuda:
-      version: [11.7.0]
     elfutils:
       variants: ~nls
       require: "%gcc"
@@ -43,18 +40,14 @@ spack:
       variants: +fortran +hl +shared
     libfabric:
       variants: fabrics=sockets,tcp,udp,rxm
-    libunwind:
-      variants: +pic +xz
     mgard:
       require:
         - "@2023-01-10:"
     mpich:
       variants: ~wrapperrpath
-    ncurses:
-      variants: +termlib
     paraview:
       # Don't build GUI support or GLX rendering for HPC/container deployments
-      require: "@5.11 ~qt ^[virtuals=gl] osmesa"
+      require: "~qt ^[virtuals=gl] osmesa"
     trilinos:
       require:
       - one_of: [+amesos +amesos2 +anasazi +aztec +boost +epetra +epetraext +ifpack
@@ -65,12 +58,6 @@ spack:
       - one_of: [~ml ~muelu ~zoltan2 ~teko, +ml +muelu +zoltan2 +teko]
       - one_of: [+superlu-dist, ~superlu-dist]
       - one_of: [+shylu, ~shylu]
-    xz:
-      variants: +pic
-    mesa:
-      version: [21.3.8]
-    unzip:
-      require: "%gcc"
 
   specs:
   # CPU
@@ -78,62 +65,43 @@ spack:
   - aml
   - arborx
   - argobots
-  - bolt
-  - butterflypack
   - boost +python +filesystem +iostreams +system
   - cabana
-  - caliper
   - chai
-  - charliecloud
   - conduit
-  # - cp2k +mpi         # libxsmm: ftn-78 ftn: ERROR in command linel; The -f option has an invalid argument, "tree-vectorize".
   - datatransferkit
   - flecsi
   - flit
-  - flux-core
-  - fortrilinos
   - ginkgo
   - globalarrays
   - gmp
   - gotcha
   - h5bench
   - hdf5-vol-async
-  - hdf5-vol-cache
+  - hdf5-vol-cache cflags=-Wno-error=incompatible-function-pointer-types
   - hdf5-vol-log
   - heffte +fftw
-  - hpx max_cpu_count=512 networking=mpi
   - hypre
   - kokkos +openmp
   - kokkos-kernels +openmp
-  - lammps
   - legion
   - libnrm
-  #- libpressio +bitgrooming +bzip2 ~cuda ~cusz +fpzip +hdf5 +libdistributed +lua +openmp +python +sz +sz3 +unix +zfp +json +remote +netcdf +mgard # mgard:
   - libquo
   - libunwind
   - mercury
   - metall
   - mfem
-  # - mgard +serial +openmp +timing +unstructured ~cuda # mgard
   - mpark-variant
-  - mpifileutils ~xattr
+  - mpifileutils ~xattr cflags=-Wno-error=implicit-function-declaration
   - nccmp
   - nco
-  - netlib-scalapack
-  - omega-h
-  - openmpi
+  - netlib-scalapack cflags=-Wno-error=implicit-function-declaration
   - openpmd-api ^adios2~mgard
-  - papi
   - papyrus
   - pdt
   - petsc
-  - plumed
   - precice
   - pumi
-  - py-h5py +mpi
-  - py-h5py ~mpi
-  - py-libensemble +mpi +nlopt
-  - py-petsc4py
   - qthreads scheduler=distrib
   - raja
   - slate ~cuda
@@ -146,8 +114,7 @@ spack:
   - swig@4.0.2-fortran
   - sz3
   - tasmanian
-  - tau +mpi +python
-  - trilinos@13.0.1 +belos +ifpack2 +stokhos
+  - trilinos +belos +ifpack2 +stokhos
   - turbine
   - umap
   - umpire
@@ -157,27 +124,47 @@ spack:
   # - alquimia            # pflotran: petsc-3.19.4-c6pmpdtpzarytxo434zf76jqdkhdyn37/lib/petsc/conf/rules:169: material_aux.o] Error 1: fortran errors
   # - amrex               # disabled temporarily pending resolution of unreproducible CI failure
   # - axom                # axom: CMake Error at axom/sidre/cmake_install.cmake:154 (file): file INSTALL cannot find "/tmp/gitlab-runner-2/spack-stage/spack-stage-axom-0.8.1-jvol6riu34vuyqvrd5ft2gyhrxdqvf63/spack-build-jvol6ri/lib/fortran/axom_spio.mod": No such file or directory.
+  # - bolt                # ld.lld: error: CMakeFiles/bolt-omp.dir/kmp_gsupport.cpp.o: symbol GOMP_atomic_end@@GOMP_1.0 has undefined version GOMP_1.0
   # - bricks              # bricks: clang-15: error: clang frontend command failed with exit code 134 (use -v to see invocation)
+  # - butterflypack ^netlib-scalapack cflags=-Wno-error=implicit-function-declaration # ftn-2116 ftn: INTERNAL "driver" was terminated due to receipt of signal 01:  Hangup.
+  # - caliper             # papi: papi_internal.c:124:3: error: use of undeclared identifier '_papi_hwi_my_thread'; did you mean '_papi_hwi_read'?
+  # - charliecloud        # libxcrypt-4.4.35: ld.lld: error: version script assignment of 'XCRYPT_2.0' to symbol 'xcrypt_r' failed: symbol not defined
+  # - cp2k +mpi           # libxsmm: ftn-78 ftn: ERROR in command linel; The -f option has an invalid argument, "tree-vectorize".
   # - dealii              # llvm@14.0.6: ?; intel-tbb@2020.3: clang-15: error: unknown argument: '-flifetime-dse=1'; assimp@5.2.5: clang-15: error: clang frontend command failed with exit code 134 (use -v to see invocation)
   # - dyninst             # requires %gcc
   # - ecp-data-vis-sdk ~cuda ~rocm +adios2 +ascent +cinema +darshan +faodel +hdf5 +paraview +pnetcdf +sz +unifyfs +veloc ~visit +vtkm +zfp ^hdf5@1.14 # llvm@14.0.6: ?;
   # - exaworks            # rust: ld.lld: error: relocation R_X86_64_32 cannot be used against local symbol; recompile with -fPIC'; defined in /opt/cray/pe/cce/15.0.1/cce/x86_64/lib/no_mmap.o, referenced by /opt/cray/pe/cce/15.0.1/cce/x86_64/lib/no_mmap.o:(__no_mmap_for_malloc)
+  # - flux-core           # libxcrypt-4.4.35: ld.lld: error: version script assignment of 'XCRYPT_2.0' to symbol 'xcrypt_r' failed: symbol not defined
+  # - fortrilinos         # trilinos-14.0.0: packages/teuchos/core/src/Teuchos_BigUIntDecl.hpp:67:8: error: no type named 'uint32_t' in namespace 'std'
   # - gasnet              # configure error: User requested --enable-ofi but I don't know how to build ofi programs for your system
   # - gptune              # py-scipy: meson.build:82:0: ERROR: Unknown compiler(s): [['/home/gitlab-runner-3/builds/dWfnZWPh/0/spack/spack/lib/spack/env/cce/ftn']]
   # - hpctoolkit          # dyninst requires %gcc
+  # - hpx max_cpu_count=512 networking=mpi  # libxcrypt-4.4.35
+  # - lammps              # lammps-20240829.1: Reversed (or previously applied) patch detected!  Assume -R? [n] 
+  # - libpressio +bitgrooming +bzip2 ~cuda ~cusz +fpzip +hdf5 +libdistributed +lua +openmp +python +sz +sz3 +unix +zfp +json +remote +netcdf +mgard # mgard: 
+  # - mgard +serial +openmp +timing +unstructured ~cuda # mgard
   # - nrm                 # py-scipy: meson.build:82:0: ERROR: Unknown compiler(s): [['/home/gitlab-runner-3/builds/dWfnZWPh/0/spack/spack/lib/spack/env/cce/ftn']]
   # - nvhpc               # requires %gcc
+  # - omega-h             # trilinos-13.4.1: packages/kokkos/core/src/impl/Kokkos_MemoryPool.cpp:112:48: error: unknown type name 'uint32_t'
+  # - openmpi             # libxcrypt-4.4.35: ld.lld: error: version script assignment of 'XCRYPT_2.0' to symbol 'xcrypt_r' failed: symbol not defined
+  # - papi                # papi_internal.c:124:3: error: use of undeclared identifier '_papi_hwi_my_thread'; did you mean '_papi_hwi_read'?
   # - parsec ~cuda        # parsec: parsec/fortran/CMakeFiles/parsec_fortran.dir/parsecf.F90.o: ftn-2103 ftn: WARNING in command line. The -W extra option is not supported or invalid and will be ignored.
   # - phist               # fortran_bindings/CMakeFiles/phist_fort.dir/phist_testing.F90.o: ftn-78 ftn: ERROR in command line. The -f option has an invalid argument, "no-math-errno".
   # - plasma              # %cce conflict
+  # - plumed              # libxcrypt-4.4.35: ld.lld: error: version script assignment of 'XCRYPT_2.0' to symbol 'xcrypt_r' failed: symbol not defined
+  # - py-h5py +mpi        # libxcrypt-4.4.35: ld.lld: error: version script assignment of 'XCRYPT_2.0' to symbol 'xcrypt_r' failed: symbol not defined
+  # - py-h5py ~mpi        # libxcrypt-4.4.35: ld.lld: error: version script assignment of 'XCRYPT_2.0' to symbol 'xcrypt_r' failed: symbol not defined
   # - py-jupyterhub       # rust: ld.lld: error: relocation R_X86_64_32 cannot be used against local symbol; recompile with -fPIC'; defined in /opt/cray/pe/cce/15.0.1/cce/x86_64/lib/no_mmap.o, referenced by /opt/cray/pe/cce/15.0.1/cce/x86_64/lib/no_mmap.o:(__no_mmap_for_malloc)
+  # - py-libensemble +mpi +nlopt  # libxcrypt-4.4.35: ld.lld: error: version script assignment of 'XCRYPT_2.0' to symbol 'xcrypt_r' failed: symbol not defined
+  # - py-petsc4py         # libxcrypt-4.4.35: ld.lld: error: version script assignment of 'XCRYPT_2.0' to symbol 'xcrypt_r' failed: symbol not defined
   # - quantum-espresso    # quantum-espresso: CMake Error at cmake/FindSCALAPACK.cmake:503 (message): A required library with SCALAPACK API not found.  Please specify library
   # - scr                 # scr: make[2]: *** [examples/CMakeFiles/test_ckpt_F.dir/build.make:112: examples/test_ckpt_F] Error 1: /opt/cray/pe/cce/15.0.1/binutils/x86_64/x86_64-pc-linux-gnu/bin/ld: /opt/cray/pe/mpich/8.1.25/ofi/cray/10.0/lib/libmpi_cray.so: undefined reference to `PMI_Barrier'
   # - strumpack ~slate    # strumpack: [test/CMakeFiles/test_HSS_seq.dir/build.make:117: test/test_HSS_seq] Error 1: ld.lld: error: undefined reference due to --no-allow-shlib-undefined: mpi_abort_
+  # - tau +mpi +python    # libelf: configure: error: installation or configuration problem: C compiler cannot create executables.; papi: papi_internal.c:124:3: error: use of undeclared identifier '_papi_hwi_my_thread'; did you mean '_papi_hwi_read'?
   # - upcxx               # upcxx: configure error: User requested --enable-ofi but I don't know how to build ofi programs for your system
   # - variorum            # variorum: /opt/cray/pe/cce/15.0.1/binutils/x86_64/x86_64-pc-linux-gnu/bin/ld: /opt/cray/pe/lib64/libpals.so.0: undefined reference to `json_array_append_new@@libjansson.so.4'
-  # - xyce +mpi +shared +pymi +pymi_static_tpls ^trilinos~shylu # openblas: ftn-2307 ftn: ERROR in command line: The "-m" option must be followed by 0, 1, 2, 3 or 4.; make[2]: *** [<builtin>: spotrf2.o] Error 1; make[1]: *** [Makefile:27: lapacklib] Error 2; make: *** [Makefile:250: netlib] Error 2
   # - warpx +python       # py-scipy: meson.build:82:0: ERROR: Unknown compiler(s): [['/home/gitlab-runner-3/builds/dWfnZWPh/0/spack/spack/lib/spack/env/cce/ftn']]
+  # - xyce +mpi +shared +pymi +pymi_static_tpls ^trilinos~shylu # openblas: ftn-2307 ftn: ERROR in command line: The "-m" option must be followed by 0, 1, 2, 3 or 4.; make[2]: *** [<builtin>: spotrf2.o] Error 1; make[1]: *** [Makefile:27: lapacklib] Error 2; make: *** [Makefile:250: netlib] Error 2
 
   cdash:
     build-group: E4S Cray

share/spack/gitlab/cloud_pipelines/stacks/hep/spack.yaml

@@ -31,6 +31,7 @@ spack:
   specs:
   # CPU
   - acts +analysis +dd4hep +edm4hep +examples +fatras +geant4 +hepmc3 +podio +pythia8 +python +tgeo cxxstd=20
+  - celeritas +geant4 +hepmc3 +openmp +root +shared +vecgeom cxxstd=20
   - dd4hep +ddalign +ddcad +ddcond +dddetectors +dddigi +ddeve +ddg4 +ddrec +edm4hep +hepmc3 +lcio +utilityapps +xercesc
   - delphes +pythia8
   - edm4hep

var/spack/repos/builtin/packages/additivefoam/assets/assets_main/Allwmake

@@ -0,0 +1,4 @@
+#!/bin/sh
+cd ${0%/*} || exit 1    # Run from this directory
+
+applications/Allwmake $targetType $*

var/spack/repos/builtin/packages/additivefoam/assets/assets_main/applications/Allwmake

@@ -0,0 +1,9 @@
+#!/bin/sh
+cd ${0%/*} || exit 1    # Run from this directory
+
+# Parse arguments for library compilation
+. $WM_PROJECT_DIR/wmake/scripts/AllwmakeParseArguments
+
+wmake $targetType solvers/additiveFoam/functionObjects/ExaCA
+wmake $targetType solvers/additiveFoam/movingHeatSource
+wmake $targetType solvers/additiveFoam

var/spack/repos/builtin/packages/additivefoam/package.py

@@ -2,10 +2,14 @@
 #
 # SPDX-License-Identifier: (Apache-2.0 OR MIT)
 
+import inspect
 import os
 
+import llnl.util.tty as tty
+
+import spack.pkg.builtin.openfoam as openfoam
 from spack.package import *
-from spack.pkg.builtin.openfoam import add_extra_files
+from spack.version import Version
 
 
 class Additivefoam(Package):
@@ -29,14 +33,36 @@ class Additivefoam(Package):
     depends_on("openfoam-org@10")
 
     common = ["spack-derived-Allwmake"]
-    assets = ["applications/Allwmake", "Allwmake"]
+    assets = [join_path("applications", "Allwmake"), "Allwmake"]
 
     build_script = "./spack-derived-Allwmake"
 
     phases = ["configure", "build", "install"]
 
+    def add_extra_files(self, common, local_prefix, local):
+        """Copy additional common and local files into the stage.source_path
+        from the openfoam/common and the package/assets directories,
+        respectively. Modified from `spack.pkg.builtin.openfoam.add_extra_files()`.
+        """
+        outdir = self.stage.source_path
+        indir = join_path(os.path.dirname(inspect.getfile(openfoam)), "common")
+        for f in common:
+            tty.info("Added file {0}".format(f))
+            openfoam.install(join_path(indir, f), join_path(outdir, f))
+
+        indir = join_path(self.package_dir, "assets", local_prefix)
+        for f in local:
+            tty.info("Added file {0}".format(f))
+            openfoam.install(join_path(indir, f), join_path(outdir, f))
+
     def patch(self):
-        add_extra_files(self, self.common, self.assets)
+        spec = self.spec
+        asset_dir = ""
+        if Version("main") in spec.versions:
+            asset_dir = "assets_main"
+        elif Version("1.0.0") in spec.versions:
+            asset_dir = "assets_1.0.0"
+        self.add_extra_files(self.common, asset_dir, self.assets)
 
     def configure(self, spec, prefix):
         pass

var/spack/repos/builtin/packages/alpgen/package.py

@@ -12,8 +12,8 @@ class Alpgen(CMakePackage, MakefilePackage):
     in hadronic collisions.
     """
 
-    homepage = "http://mlm.home.cern.ch/mlm/alpgen/"
-    url = "http://mlm.home.cern.ch/mlm/alpgen/V2.1/v214.tgz"
+    homepage = "https://alpgen.web.cern.ch/"
+    url = "https://alpgen.web.cern.ch/V2.1/v214.tgz"
 
     tags = ["hep"]
 

var/spack/repos/builtin/packages/ectrans/package.py

@@ -58,6 +58,9 @@ class Ectrans(CMakePackage):
     depends_on("fiat~mpi", when="~mpi")
     depends_on("fiat+mpi", when="+mpi")
 
+    # https://github.com/ecmwf-ifs/ectrans/issues/194
+    conflicts("%oneapi@2025:", when="@1.3.1:1.5.1")
+
     def cmake_args(self):
         args = [
             self.define_from_variant("ENABLE_MPI", "mpi"),

var/spack/repos/builtin/packages/edm4hep/package.py

@@ -90,6 +90,8 @@ class Edm4hep(CMakePackage):
     # Corresponding changes in EDM4hep landed with https://github.com/key4hep/EDM4hep/pull/314
     extends("python", when="@0.10.6:")
 
+    conflicts("%clang@:16", when="@0.99.1:", msg="Incomplete consteval support in clang")
+
     def cmake_args(self):
         args = [
             self.define_from_variant("CMAKE_CXX_STANDARD", "cxxstd"),

var/spack/repos/builtin/packages/evtgen/package.py

@@ -16,24 +16,20 @@ class Evtgen(CMakePackage):
 
     maintainers("vvolkl")
 
+    version("02.02.03", sha256="b642700b703190e3304edb98ff464622db5d03c1cfc5d275ba4a628227d7d6d0")
+    version("02.02.02", sha256="e543d1213cd5003124139d0dc7eee9247b0b9d44154ff8a88bac52ba91c5dfc9")
     version("02.02.01", sha256="1fcae56c6b27b89c4a2f4b224d27980607442185f5570e961f6334a3543c6e77")
     version("02.02.00", sha256="0c626e51cb17e799ad0ffd0beea5cb94d7ac8a5f8777b746aa1944dd26071ecf")
     version("02.00.00", sha256="02372308e1261b8369d10538a3aa65fe60728ab343fcb64b224dac7313deb719")
-    # switched to cmake in 02.00.00
-    version(
-        "01.07.00",
-        sha256="2648f1e2be5f11568d589d2079f22f589c283a2960390bbdb8d9d7f71bc9c014",
-        deprecated=True,
-    )
 
     depends_on("cxx", type="build")  # generated
 
     variant("pythia8", default=True, description="Build with pythia8")
     variant("tauola", default=False, description="Build with tauola")
     variant("photos", default=False, description="Build with photos")
+    variant("sherpa", default=False, description="build with sherpa")
     variant("hepmc3", default=False, description="Link with hepmc3 (instead of hepmc)")
 
-    patch("g2c.patch", when="@01.07.00")
     patch("evtgen-2.0.0.patch", when="@02.00.00 ^pythia8@8.304:")
 
     depends_on("hepmc", when="~hepmc3")
@@ -44,6 +40,8 @@ class Evtgen(CMakePackage):
     depends_on("photos~hepmc3", when="+photos~hepmc3")
     depends_on("tauola+hepmc3", when="+tauola+hepmc3")
     depends_on("photos+hepmc3", when="+photos+hepmc3")
+    depends_on("sherpa@2:", when="@02.02.01: +sherpa")
+    depends_on("sherpa@:2", when="@:02 +sherpa")
 
     conflicts(
         "^pythia8+evtgen",
@@ -53,7 +51,6 @@ class Evtgen(CMakePackage):
         "that cannot be resolved at the moment! "
         "Use evtgen+pythia8^pythia8~evtgen.",
     )
-    conflicts("+hepmc3", when="@:01", msg="hepmc3 support was added in 02.00.00")
 
     @property
     def root_cmakelists_dir(self):
@@ -71,6 +68,7 @@ def cmake_args(self):
         args.append(self.define_from_variant("EVTGEN_PYTHIA", "pythia8"))
         args.append(self.define_from_variant("EVTGEN_TAUOLA", "tauola"))
         args.append(self.define_from_variant("EVTGEN_PHOTOS", "photos"))
+        args.append(self.define_from_variant("EVTGEN_SHERPA", "sherpa"))
         args.append(self.define_from_variant("EVTGEN_HEPMC3", "hepmc3"))
 
         return args
@@ -85,50 +83,5 @@ def patch(self):
 
         filter_file("-shared", "-dynamiclib -undefined dynamic_lookup", "make.inc")
 
-    # Taken from AutotoolsPackage
-    def configure(self, spec, prefix):
-        """Runs configure with the arguments specified in
-        :py:meth:`~.AutotoolsPackage.configure_args`
-        and an appropriately set prefix.
-        """
-        options = getattr(self, "configure_flag_args", [])
-        options += ["--prefix={0}".format(prefix)]
-        options += self.configure_args()
-
-        with working_dir(self.build_directory, create=True):
-            configure(*options)
-
-    @when("@:01")
-    def configure_args(self):
-        args = []
-
-        args.append("--hepmcdir=%s" % self.spec["hepmc"].prefix)
-        if self.spec.satisfies("+pythia8"):
-            args.append("--pythiadir=%s" % self.spec["pythia8"].prefix)
-        if self.spec.satisfies("+photos"):
-            args.append("--photosdir=%s" % self.spec["photos"].prefix)
-        if self.spec.satisfies("+tauola"):
-            args.append("--tauoladir=%s" % self.spec["tauola"].prefix)
-
-        return args
-
-    @when("@:01")
-    def cmake(self, spec, prefix):
-        pass
-
-    @when("@:01")
-    def build(self, spec, prefix):
-        self.configure(spec, prefix)
-        # avoid parallel compilation errors
-        # due to libext_shared depending on lib_shared
-        with working_dir(self.build_directory):
-            make("lib_shared")
-            make("all")
-
-    @when("@:01")
-    def install(self, spec, prefix):
-        with working_dir(self.build_directory):
-            make("install")
-
     def setup_run_environment(self, env):
         env.set("EVTGEN", self.prefix.share)

var/spack/repos/builtin/packages/geant4/geant4-10.7-cxx20-g3tog4.patch

@@ -0,0 +1,26 @@
+diff --git a/source/g3tog4/include/G3EleTable.hh b/source/g3tog4/include/G3EleTable.hh
+index 0ab9c4fd566..18c6f73fde6 100644
+--- a/source/g3tog4/include/G3EleTable.hh
++++ b/source/g3tog4/include/G3EleTable.hh
+@@ -56,7 +56,7 @@ public:  // with description
+ private:
+
+   void LoadUp();
+-  G4int parse(G4double& Z, char* name, char* sym, G4double& A); 
++  G4int parse(G4double& Z, char (&name)[20], char (&sym)[3], G4double& A);
+
+ private:
+
+diff --git a/source/g3tog4/src/G3EleTable.cc b/source/g3tog4/src/G3EleTable.cc
+index cecc494b201..a2f3af3d6a2 100644
+--- a/source/g3tog4/src/G3EleTable.cc
++++ b/source/g3tog4/src/G3EleTable.cc
+@@ -64,7 +64,7 @@ G3EleTable::GetEle(G4double Z){
+ }
+
+ G4int 
+-G3EleTable::parse(G4double& Z, char* name, char* sym, G4double& A){ 
++G3EleTable::parse(G4double& Z, char (&name)[20], char (&sym)[3], G4double& A){
+  G4int rc = 0;
+   if (Z>0 && Z <=_MaxEle){
+     G4int z = (G4int) Z-1;

var/spack/repos/builtin/packages/geant4/package.py

@@ -20,6 +20,7 @@ class Geant4(CMakePackage):
     executables = ["^geant4-config$"]
 
     maintainers("drbenmorgan", "sethrj")
+
     version("11.3.0", sha256="d9d71daff8890a7b5e0e33ea9a65fe6308ad6713000b43ba6705af77078e7ead")
     version("11.2.2", sha256="3a8d98c63fc52578f6ebf166d7dffaec36256a186d57f2520c39790367700c8d")
     version("11.2.1", sha256="76c9093b01128ee2b45a6f4020a1bcb64d2a8141386dea4674b5ae28bcd23293")
@@ -203,29 +204,30 @@ def std_when(values):
             depends_on("qt@5.9:", when="@11.2:")
     conflicts("@:11.1 ^[virtuals=qmake] qt-base", msg="Qt6 not supported before 11.2")
 
+    # CMAKE PROBLEMS #
     # As released, 10.0.4 has inconsistently capitalised filenames
     # in the cmake files; this patch also enables cxxstd 14
     patch("geant4-10.0.4.patch", when="@10.0.4")
-    # Fix member field typo in g4tools wroot
-    # See https://bugzilla-geant4.kek.jp/show_bug.cgi?id=2640
-    patch("columns-11.patch", when="@11:11.2.2")
-    patch("columns-10.patch", when="@10.4:10")
-    # As released, 10.03.03 has issues with respect to using external
-    # CLHEP.
-    patch("CLHEP-10.03.03.patch", level=1, when="@10.3")
     # Build failure on clang 15, ubuntu 22: see Geant4 problem report #2444
     # fixed by ascii-V10-07-03
-    patch("geant4-10.6.patch", level=1, when="@10.0:10.6")
-    # These patches can be applied independent of the cxxstd value?
-    patch("cxx17.patch", when="@10.3 cxxstd=17")
-    patch("cxx17_geant4_10_0.patch", level=1, when="@10.4.0 cxxstd=17")
-    patch("geant4-10.4.3-cxx17-removed-features.patch", level=1, when="@10.4.3 cxxstd=17")
+    patch("geant4-10.6.patch", when="@10.0:10.6")
+    # Enable "17" cxxstd option in CMake (2 different filenames)
+    patch("geant4-10.3-cxx17-cmake.patch", when="@10.3 cxxstd=17")
+    patch("geant4-10.4-cxx17-cmake.patch", when="@10.4:10.4.2 cxxstd=17")
+    # Fix exported cmake: https://bugzilla-geant4.kek.jp/show_bug.cgi?id=2556
+    patch("package-cache.patch", when="@10.7.0:11.1.2^cmake@3.17:")
 
-    # See https://bugzilla-geant4.kek.jp/show_bug.cgi?id=2556
-    patch("package-cache.patch", level=1, when="@10.7.0:11.1.2^cmake@3.17:")
-
-    # Issue with Twisted tubes, see https://bugzilla-geant4.kek.jp/show_bug.cgi?id=2619
-    patch("twisted-tubes.patch", level=1, when="@11.2.0:11.2.2")
+    # BUILD ERRORS #
+    # Fix C++17: add -D_LIBCPP_ENABLE_CXX17_REMOVED_FEATURES C++ flag
+    patch("geant4-10.4.3-cxx17-removed-features.patch", when="@10.4.3 cxxstd=17")
+    # Fix C++20: build error due to removed-in-C++20 `ostream::operator>>(char*)`
+    # (different, simpler approach than upstream Geant4 changes)
+    patch("geant4-10.7-cxx20-g3tog4.patch", when="@:10.7 cxxstd=20")
+    # Fix member field typo in g4tools wroot: https://bugzilla-geant4.kek.jp/show_bug.cgi?id=2640
+    patch("columns-10.patch", when="@10.4:10")
+    patch("columns-11.patch", when="@11:11.2.2")
+    # Fix navigation errors with twisted tubes: https://bugzilla-geant4.kek.jp/show_bug.cgi?id=2619
+    patch("twisted-tubes.patch", when="@11.2.0:11.2.2")
 
     # NVHPC: "thread-local declaration follows non-thread-local declaration"
     conflicts("%nvhpc", when="+threads")

var/spack/repos/builtin/packages/gh/package.py

@@ -58,6 +58,20 @@ def build_args(self):
         args.extend(["-trimpath", "./cmd/gh"])
         return args
 
+    @property
+    def check_args(self):
+        args = super().check_args
+        skip_tests = (
+            "TestHasNoActiveToken|TestTokenStoredIn.*|"
+            "TestSwitchUser.*|TestSwitchClears.*|"
+            "TestTokenWorksRightAfterMigration|"
+            "Test_loginRun.*|Test_logoutRun.*|Test_refreshRun.*|"
+            "Test_setupGitRun.*|Test_CheckAuth|TestSwitchRun.*|"
+            "Test_statusRun.*|TestTokenRun.*"
+        )
+        args.extend([f"-skip={skip_tests}", "./..."])
+        return args
+
     @run_after("install")
     def install_completions(self):
         gh = Executable(self.prefix.bin.gh)

var/spack/repos/builtin/packages/herwig3/package.py

@@ -35,6 +35,10 @@ class Herwig3(AutotoolsPackage):
     depends_on("thepeg@2.2.3", when="@7.2.3")
     depends_on("thepeg@2.3.0", when="@7.3.0")
     depends_on("evtgen")
+    conflicts(
+        "^evtgen ~photos ~pythia8 ~sherpa ~tauola",
+        msg="At least one external EvtGen component required",
+    )
 
     depends_on("boost +math+test")
     depends_on("python", type=("build", "run"))

var/spack/repos/builtin/packages/hevea/package.py

@@ -17,6 +17,7 @@ class Hevea(MakefilePackage):
     license("LGPL-2.0-only")
 
     version("develop", branch="master")
+    version("2.36", sha256="9848359f935af24b6f962b2ed5d5ac32614bffeb37da374b0960cc0f58e69f0c")
     version("2.35", sha256="78f834cc7a8112ec59d0b8acdfbed0c8ac7dbb85f964d0be1f4eed04f25cdf54")
     version("2.34", sha256="f505a2a5bafdc2ea389ec521876844e6fdcb5c1b656396b7e8421c1631469ea2")
     version("2.33", sha256="122f9023f9cfe8b41dd8965b7d9669df21bf41e419bcf5e9de5314f428380d0f")
@@ -27,6 +28,8 @@ class Hevea(MakefilePackage):
     # Dependency demands ocamlbuild
     depends_on("ocaml")
     depends_on("ocamlbuild")
+    depends_on("ocaml@4", when="@:2.35")
+    depends_on("ocaml@4.08.0:", when="@2.34:")
 
     def edit(self, spec, prefix):
         env["PREFIX"] = self.spec.prefix

var/spack/repos/builtin/packages/libxml2/package.py

@@ -28,6 +28,7 @@ def url_for_version(self, version):
 
     license("MIT")
 
+    version("2.13.5", sha256="74fc163217a3964257d3be39af943e08861263c4231f9ef5b496b6f6d4c7b2b6")
     version("2.13.4", sha256="65d042e1c8010243e617efb02afda20b85c2160acdbfbcb5b26b80cec6515650")
     version("2.12.9", sha256="59912db536ab56a3996489ea0299768c7bcffe57169f0235e7f962a91f483590")
     version("2.11.9", sha256="780157a1efdb57188ec474dca87acaee67a3a839c2525b2214d318228451809f")
@@ -65,6 +66,7 @@ def url_for_version(self, version):
 
     depends_on("c", type="build")
 
+    variant("http", default=False, description="Enable HTTP support")
     variant("python", default=False, description="Enable Python support")
     variant("shared", default=True, description="Build shared library")
     variant("pic", default=True, description="Enable position-independent code (PIC)")
@@ -251,6 +253,8 @@ def configure_args(self):
         else:
             args.append("--without-python")
 
+        args.extend(self.with_or_without("http"))
+
         args.extend(self.enable_or_disable("shared"))
         # PIC setting is taken care of above by self.flag_handler()
         args.append("--without-pic")
@@ -294,4 +298,6 @@ def configure(self, pkg, spec, prefix):
             ]
             if spec.satisfies("+python"):
                 opts.append("python=yes")
+            if spec.satisfies("+http"):
+                opts.append("http=yes")
             cscript("configure.js", *opts)

var/spack/repos/builtin/packages/mapl/package.py

@@ -38,6 +38,7 @@ class Mapl(CMakePackage):
     version("develop", branch="develop")
     version("main", branch="main")
 
+    version("2.51.2", sha256="f6df2be24d0c113af3d0424b674d970621660bf11e59a699373f014a14d0716e")
     version("2.51.1", sha256="337dba3980de1d5e603361ecf8f001c5bf99d0addecbeb5c207f3604183ca623")
     version("2.51.0", sha256="56213d845f5287e599213aab1dea60bf6b64c29cd8093313639304b270c45676")
     version("2.50.3", sha256="506f73d511b6a63645bbf953bf04f663da06f5069cb559340786e9fe8eeb170f")

var/spack/repos/builtin/packages/neko/package.py

@@ -10,27 +10,30 @@ class Neko(AutotoolsPackage, CudaPackage, ROCmPackage):
     for high-fidelity computational fluid dynamics
     """
 
-    homepage = "https://github.com/ExtremeFLOW/neko"
+    homepage = "https://neko.cfd"
     git = "https://github.com/ExtremeFLOW/neko.git"
     url = "https://github.com/ExtremeFLOW/neko/releases/download/v0.3.2/neko-0.3.2.tar.gz"
     maintainers("njansson")
 
+    version("develop", branch="develop")
+    version("0.9.1", sha256="098bee5cb807d10cdf2fb56111ba8cbc592882a87e4dae18caf9dbda894611ef")
     version("0.9.0", sha256="3cffe629ada1631d8774fa51d8bb14b95dc0cea21578c0e07e70deb611a5091a")
     version("0.8.1", sha256="ac8162bc18e7112fd21b49c5a9c36f45c7b84896e90738be36a182990798baec")
     version("0.8.0", sha256="09d0b253c8abda9f384bf8f03b17b50d774cb0a1f7b72744a8e863acac516a51")
     version("0.7.2", sha256="5dd17fbae83d0b26dc46fafce4e5444be679cdce9493cef4ff7d504e2f854254")
     version("0.7.1", sha256="c935c3d93b0975db46448045f97aced6ac2cab31a2b8803047f8086f98dcb981")
     version("0.7.0", sha256="fe871e0a79f388073e0b3dc191d1c0d5da3a53883f5b1951d88b9423fc79a53c")
-    version("0.6.1", sha256="6282baaf9c8a201669e274cba23c37922f7ad701ba20ef086442e48f00dabf29")
-    version("0.6.0", sha256="ce37c7cea1a7bf1bf554c5717aa7fed35bbd079ff68c2fc9d3529facc717e31a")
-    version("0.5.2", sha256="8873f5ada106f92f21c9bb13ea8164550bccde9301589b9e7f1c1a82a2efe2b8")
-    version("0.5.1", sha256="8b176bcc9f2d4a6804b68dd93a2f5e02e2dfa986d5c88063bbc72d39e9659cc4")
-    version("0.5.0", sha256="01a745f2e19dd278330889a0dd6c5ab8af49da99c888d95c10adb5accc1cbfc4")
-    version("0.4.3", sha256="ba8fde09cbc052bb4791a03f69c880705615b572982cd3177ee31e4e14931da2")
-    version("0.4.2", sha256="927f926bdbf027c30e8e383e1790e84b60f5a9ed61e48a413092aac2ab24abcc")
-    version("0.3.2", sha256="0628910aa9838a414f2f27d09ea9474d1b3d7dcb5a7715556049a2fdf81a71ae")
-    version("0.3.0", sha256="e46bef72f694e59945514ab8b1ad7d74f87ec9dca2ba2b230e2148662baefdc8")
-    version("develop", branch="develop")
+
+    with default_args(deprecated=True):
+        version("0.6.1", sha256="6282baaf9c8a201669e274cba23c37922f7ad701ba20ef086442e48f00dabf29")
+        version("0.6.0", sha256="ce37c7cea1a7bf1bf554c5717aa7fed35bbd079ff68c2fc9d3529facc717e31a")
+        version("0.5.2", sha256="8873f5ada106f92f21c9bb13ea8164550bccde9301589b9e7f1c1a82a2efe2b8")
+        version("0.5.1", sha256="8b176bcc9f2d4a6804b68dd93a2f5e02e2dfa986d5c88063bbc72d39e9659cc4")
+        version("0.5.0", sha256="01a745f2e19dd278330889a0dd6c5ab8af49da99c888d95c10adb5accc1cbfc4")
+        version("0.4.3", sha256="ba8fde09cbc052bb4791a03f69c880705615b572982cd3177ee31e4e14931da2")
+        version("0.4.2", sha256="927f926bdbf027c30e8e383e1790e84b60f5a9ed61e48a413092aac2ab24abcc")
+        version("0.3.2", sha256="0628910aa9838a414f2f27d09ea9474d1b3d7dcb5a7715556049a2fdf81a71ae")
+        version("0.3.0", sha256="e46bef72f694e59945514ab8b1ad7d74f87ec9dca2ba2b230e2148662baefdc8")
 
     depends_on("c", type="build")  # generated
     depends_on("fortran", type="build")  # generated

var/spack/repos/builtin/packages/ocamlbuild/package.py

@@ -20,11 +20,17 @@ class Ocamlbuild(MakefilePackage):
 
     # Add proper versions here.
     version("master", branch="master")
+    version("0.15.0", sha256="d3f6ee73100b575d4810247d10ed8f53fccef4e90daf0e4a4c5f3e6a3030a9c9")
+    version("0.14.3", sha256="ce151bfd2141abc6ee0b3f25ba609e989ff564a48bf795d6fa7138a4db0fc2e1")
+    version("0.14.2", sha256="62d2dab6037794c702a83ac584a7066d018cf1645370d1f3d5764c2b458791b1")
+    version("0.14.1", sha256="4e1279ff0ef80c862eaa5207a77020d741e89ef94f0e4a92a37c4188dbf08256")
     version("0.14.0", sha256="87b29ce96958096c0a1a8eeafeb6268077b2d11e1bf2b3de0f5ebc9cf8d42e78")
     version("0.13.1", sha256="79839544bcaebc8f9f0d73d029e2b67e2c898bba046c559ea53de81ea763408c")
 
     # Add dependencies if required.
     depends_on("ocaml")
+    depends_on("ocaml@:5.0.0", when="@:0.14.1")
+    depends_on("ocaml@:5.1.1", when="@:0.14.2")
 
     # Installation : https://github.com/ocaml/ocamlbuild/
     def edit(self, spec, prefix):

var/spack/repos/builtin/packages/openmpi/package.py

@@ -32,6 +32,7 @@ class Openmpi(AutotoolsPackage, CudaPackage):
     url = "https://download.open-mpi.org/release/open-mpi/v4.1/openmpi-4.1.0.tar.bz2"
     list_url = "https://www.open-mpi.org/software/ompi/"
     git = "https://github.com/open-mpi/ompi.git"
+    cxxname = "mpic++"
 
     maintainers("hppritcha", "naughtont3")
 
@@ -885,7 +886,7 @@ def setup_run_environment(self, env):
         # Because MPI is both a runtime and a compiler, we have to setup the
         # compiler components as part of the run environment.
         env.set("MPICC", join_path(self.prefix.bin, "mpicc"))
-        env.set("MPICXX", join_path(self.prefix.bin, "mpic++"))
+        env.set("MPICXX", join_path(self.prefix.bin, self.cxxname))
         env.set("MPIF77", join_path(self.prefix.bin, "mpif77"))
         env.set("MPIF90", join_path(self.prefix.bin, "mpif90"))
         # Open MPI also has had mpifort since v1.7, so we can set MPIFC to that
@@ -927,7 +928,7 @@ def setup_dependent_build_environment(self, env, dependent_spec):
 
     def setup_dependent_package(self, module, dependent_spec):
         self.spec.mpicc = join_path(self.prefix.bin, "mpicc")
-        self.spec.mpicxx = join_path(self.prefix.bin, "mpic++")
+        self.spec.mpicxx = join_path(self.prefix.bin, self.cxxname)
         self.spec.mpifc = join_path(self.prefix.bin, "mpif90")
         self.spec.mpif77 = join_path(self.prefix.bin, "mpif77")
 

var/spack/repos/builtin/packages/podman/package.py

@@ -14,6 +14,10 @@ class Podman(Package):
 
     license("Apache-2.0")
 
+    version("4.9.3", sha256="37afc5bba2738c68dc24400893b99226c658cc9a2b22309f4d7abe7225d8c437")
+    version("4.8.3", sha256="3a99b6c82644fa52929cf4143943c63d6784c84094892bc0e14197fa38a1c7fa")
+    version("4.7.2", sha256="10346c5603546427bd809b4d855d1e39b660183232309128ad17a64969a0193d")
+    version("4.6.2", sha256="2d8e04f0c3819c3f0ed1ca5d01da87e6d911571b96ae690448f7f75df41f2ad1")
     version("4.5.1", sha256="ee2c8b02b7fe301057f0382637b995a9c6c74e8d530692d6918e4c509ade6e39")
     version("4.3.1", sha256="455c29c4ee78cd6365e5d46e20dd31a5ce4e6e1752db6774253d76bd3ca78813")
     version("3.4.7", sha256="4af6606dd072fe946960680611ba65201be435b43edbfc5cc635b2a01a899e6e")

var/spack/repos/builtin/packages/py-click/package.py

@@ -14,6 +14,7 @@ class PyClick(PythonPackage):
 
     license("BSD-3-Clause")
 
+    version("8.1.8", sha256="ed53c9d8990d83c2a27deae68e4ee337473f6330c040a31d4225c9574d16096a")
     version("8.1.7", sha256="ca9853ad459e787e2192211578cc907e7594e294c7ccc834310722b41b9ca6de")
     version("8.1.3", sha256="7682dc8afb30297001674575ea00d1814d808d6a36af415a82bd481d37ba7b8e")
     version("8.0.3", sha256="410e932b050f5eed773c4cda94de75971c89cdb3155a72a0831139a79e5ecb5b")
@@ -28,7 +29,10 @@ class PyClick(PythonPackage):
 
     # Needed to ensure that Spack can bootstrap black with Python 3.6
     depends_on("python@3.7:", when="@8.1:", type=("build", "run"))
-    depends_on("py-setuptools", type="build")
+    with when("@8.1.8:"):
+        depends_on("py-flit-core@:3", type="build")
+    with when("@:8.1.7"):
+        depends_on("py-setuptools", type="build")
 
     depends_on("py-importlib-metadata", when="@8: ^python@:3.7", type=("build", "run"))
     depends_on("py-colorama", when="@8: platform=windows", type=("build", "run"))

var/spack/repos/builtin/packages/py-deepdiff/package.py

@@ -13,9 +13,22 @@ class PyDeepdiff(PythonPackage):
 
     license("MIT")
 
+    version("8.1.1", sha256="dd7bc7d5c8b51b5b90f01b0e2fe23c801fd8b4c6a7ee7e31c5a3c3663fcc7ceb")
+    version("8.0.1", sha256="245599a4586ab59bb599ca3517a9c42f3318ff600ded5e80a3432693c8ec3c4b")
+    version("7.0.1", sha256="260c16f052d4badbf60351b4f77e8390bee03a0b516246f6839bc813fb429ddf")
+    version("6.7.1", sha256="b367e6fa6caac1c9f500adc79ada1b5b1242c50d5f716a1a4362030197847d30")
+    version("6.6.1", sha256="75c75b1511f0e48edef2b70d785a9c32b2631666b465fa8c32270a77a7b950b5")
+    version("6.5.0", sha256="080b1359d6128f3f5f1738c6be3064f0ad9b0cc41994aa90a028065f6ad11f25")
+    version("6.4.1", sha256="744c4e54ff83eaa77a995b3311dccdce6ee67773335a34a5ef269fa048005457")
+    version("6.3.1", sha256="e8c1bb409a2caf1d757799add53b3a490f707dd792ada0eca7cac1328055097a")
     version("6.3.0", sha256="6a3bf1e7228ac5c71ca2ec43505ca0a743ff54ec77aa08d7db22de6bc7b2b644")
     version("5.6.0", sha256="e3f1c3a375c7ea5ca69dba6f7920f9368658318ff1d8a496293c79481f48e649")
 
     depends_on("py-setuptools", type="build")
-    depends_on("py-ordered-set@4.0.2:4.1", when="@6:", type=("build", "run"))
+    depends_on("py-orderly-set@5.2.3:5", when="@8.1.0:", type=("build", "run"))
+    depends_on("py-orderly-set@5.2.2", when="@8.0.1", type=("build", "run"))
+    depends_on("py-orderly-set@5.2.1", when="@8.0.0", type=("build", "run"))
+
+    depends_on("py-ordered-set@4.1", when="@7.0.1:7", type=("build", "run"))
+    depends_on("py-ordered-set@4.0.2:4.1", when="@6:7.0.0", type=("build", "run"))
     depends_on("py-ordered-set@4.0.2", when="@:5", type=("build", "run"))

var/spack/repos/builtin/packages/py-espresso/package.py

@@ -26,15 +26,28 @@ class PyEspresso(CMakePackage):
     license("GPL-3.0-only")
 
     version("develop", branch="python")
+    version("4.2.2", sha256="2bc02f91632b0030f1203759768bd718bd8a0005f72696980b12331b4bfa0d76")
+    version("4.2.1", sha256="d74b46438b0d013cac35602e28f3530686446a3a307f6771baf15395066bdad5")
+    version("4.2.0", sha256="080bbf6bec5456192ce4e1bc0ddebb9e8735db723d3062ec87154f1ac411aaab")
+
+    version("4.1.4", sha256="c1b68de63755475c5eb3ae8117d8c6d96c8ac36cc0f46dd44417a8e7ebe9242c")
+    version("4.1.3", sha256="13dd998f71547c6c979a33d918b7f83e1a0e1c5f2bf2ddeeb0d1e99a3dcd6008")
+    version("4.1.2", sha256="00bc8e4cab8fc8f56d18978970b55f09168521ed5898a92769986f2157a81a2c")
+    version("4.1.1", sha256="61f19f17469522d4aa480ff5254217668ba713589c6b74576e6305920d688f90")
+    version("4.1.0", sha256="83cd5dd50c022d028697ff3e889005e4881100ed8cd56b558978f23d0b590c85")
+
     version("4.0.2", sha256="89878ab44a58e90b69d56368e961b8ca13d9307f8d4b282967a1f3071a62c740")
     version("4.0.1", sha256="17b7268eeba652a77f861bc534cdd05d206e7641d203a9dd5029b44bd422304b")
     version("4.0.0", sha256="8e128847447eebd843de24be9b4ad14aa19c028ae48879a5a4535a9683836e6b")
 
-    depends_on("cxx", type="build")  # generated
-
     # espressomd/espresso#2244 merge upstream
     patch("2244.patch", when="@4.0.0")
 
+    # Support for modern gcc was fixed in 4.2 (https://github.com/espressomd/espresso/pull/3990)
+    conflicts("%gcc@11:", when="@:4.1")
+
+    variant("hdf5", default=True, description="Enable HDF5 backend")
+
     depends_on("cmake@3.0:", type="build")
     depends_on("mpi")
     depends_on("boost+serialization+filesystem+system+python+mpi")
@@ -47,4 +60,16 @@ class PyEspresso(CMakePackage):
     depends_on("py-cython@0.23:", type="build")
     depends_on("py-numpy", type=("build", "run"))
     depends_on("fftw")
-    depends_on("hdf5+hl+mpi")
+    depends_on("hdf5+hl+mpi", when="+hdf5")
+
+    def cmake_args(self):
+        args = []
+
+        if self.spec.satisfies("@4.0:4.1"):
+            # 4.1 defaults CUDA options to ON, which this package does not currently support
+            # Ideally a future version of the package would add proper CUDA support.
+            args.append(self.define("WITH_CUDA", False))
+
+        args.append(self.define_from_variant("WITH_HDF5", "hdf5"))
+
+        return args

var/spack/repos/builtin/packages/py-orderly-set/package.py

@@ -0,0 +1,22 @@
+# Copyright Spack Project Developers. See COPYRIGHT file for details.
+#
+# SPDX-License-Identifier: (Apache-2.0 OR MIT)
+
+from spack.package import *
+
+
+class PyOrderlySet(PythonPackage):
+    """Orderly Set is a package containing multiple implementations of
+    Ordered Set."""
+
+    homepage = "https://github.com/seperman/orderly-set"
+    pypi = "orderly_set/orderly_set-5.2.3.tar.gz"
+
+    license("MIT", checked_by="wdconinc")
+
+    version("5.2.3", sha256="571ed97c5a5fca7ddeb6b2d26c19aca896b0ed91f334d9c109edd2f265fb3017")
+    version("5.2.2", sha256="52a18b86aaf3f5d5a498bbdb27bf3253a4e5c57ab38e5b7a56fa00115cd28448")
+    version("5.2.1", sha256="2adab28582db06f3fec29eaf1b31cc55358d2d9471a54e89a285cfa194258328")
+
+    depends_on("python@3.8:", type=("build", "run"))
+    depends_on("py-setuptools", type="build")

var/spack/repos/builtin/packages/py-py-spy/package.py

@@ -5,26 +5,20 @@
 from spack.package import *
 
 
-class PyPySpy(Package):
+class PyPySpy(CargoPackage):
     """A Sampling Profiler for Python."""
 
     homepage = "https://github.com/benfred/py-spy"
     url = "https://github.com/benfred/py-spy/archive/v0.3.8.tar.gz"
 
-    license("MIT")
+    license("MIT", checked_by="lgarrison")
 
+    version("0.4.0", sha256="13a5c4b949947425670eedac05b6dd27edbc736b75f1587899efca1a7ef79ac3")
     version("0.3.8", sha256="9dbfd0ea79ef31a2966891e86cf6238ed3831938cf562e71848e07b7009cf57d")
     version("0.3.3", sha256="41454d3d9132da45c72f7574faaff65f40c757720293a277ffa5ec5a4b44f902")
 
-    depends_on("c", type="build")  # generated
-
     # TODO: uses cargo to download and build dozens of dependencies.
     # Need to figure out how to manage these with Spack once we have a
     # CargoPackage base class.
-    depends_on("rust", type="build")
     depends_on("unwind")
     depends_on("libunwind components=ptrace", when="^[virtuals=unwind] libunwind")
-
-    def install(self, spec, prefix):
-        cargo = which("cargo")
-        cargo("install", "--root", prefix, "--path", ".")

var/spack/repos/builtin/packages/py-rucio-clients/package.py

@@ -15,6 +15,16 @@ class PyRucioClients(PythonPackage):
 
     license("Apache-2.0", checked_by="wdconinc")
 
+    version(
+        "36.0.0.post2", sha256="48ac2e3217aac9aaa70133cbfff991560bbeb162165bcf3dd3425967c8a2f816"
+    )
+    version(
+        "36.0.0.post1", sha256="141aafdde66080d36708dedc9f06a72c55918ee1d138b8cd2f5d2fe43cbc504f"
+    )
+    version("36.0.0", sha256="80fbf3b2ec63c13ac1ce430d769fcc526a5f742ba3960ecc64560e0d4cd465b5")
+    version("35.6.0", sha256="3c77dea0ce95b7649211da08cee7e93fa9ecb1a6c91bbe750b76b4c576a8b0dd")
+    version("35.5.0", sha256="bc79602193e271f66c3fdb43e7abda7903026795d6f3c5d71afb5e52250f8d92")
+    version("35.4.1", sha256="d87405785776d7522100cda2ebc16892f94cda94d3c257896ee4817c4e03c06b")
     version("35.4.0", sha256="f8771ee39d0d496109586ddbb4000ce006a193fd33cdac8a654661ae0b7346c0")
 
     variant("ssh", default=False, description="Enable SSH2 protocol library")
@@ -31,6 +41,9 @@ class PyRucioClients(PythonPackage):
     depends_on("py-dogpile-cache@1.2.2:", type=("build", "run"))
     depends_on("py-tabulate@0.9.0:", type=("build", "run"))
     depends_on("py-jsonschema@4.20.0:", type=("build", "run"))
+    depends_on("py-packaging@24.1:", type=("build", "run"), when="@36:")
+    depends_on("py-rich@13.7.1:", type=("build", "run"), when="@36:")
+    depends_on("py-typing-extensions@4.12.2:", type=("build", "run"), when="@36:")
 
     with when("+ssh"):
         depends_on("py-paramiko@3.4.0:")

var/spack/repos/builtin/packages/py-six/package.py

@@ -12,6 +12,7 @@ class PySix(PythonPackage):
 
     license("MIT")
 
+    version("1.17.0", sha256="ff70335d468e7eb6ec65b95b99d3a2836546063f63acc5171de367e834932a81")
     version("1.16.0", sha256="1e61c37477a1626458e36f7b1d82aa5c9b094fa4802892072e49de9c60c4c926")
     version("1.15.0", sha256="30639c035cdb23534cd4aa2dd52c3bf48f06e5f4a941509c8bafd8ce11080259")
     version("1.14.0", sha256="236bdbdce46e6e6a3d61a337c0f8b763ca1e8717c03b369e87a7ec7ce1319c0a")
@@ -22,4 +23,5 @@ class PySix(PythonPackage):
     version("1.8.0", sha256="047bbbba41bac37c444c75ddfdf0573dd6e2f1fbd824e6247bb26fa7d8fa3830")
 
     depends_on("python@2.7:2.8,3.3:", type=("build", "run"))
+    depends_on("python@:3.13", type=("build", "run"), when="@:1.16")
     depends_on("py-setuptools", type="build")

var/spack/repos/builtin/packages/py-typer/package.py

@@ -16,6 +16,7 @@ class PyTyper(PythonPackage):
     version("0.15.1", sha256="a0588c0a7fa68a1978a069818657778f86abe6ff5ea6abf472f940a08bfe4f0a")
     version("0.9.0", sha256="50922fd79aea2f4751a8e0408ff10d2662bd0c8bbfa84755a699f3bada2978b2")
     version("0.7.0", sha256="ff797846578a9f2a201b53442aedeb543319466870fbe1c701eab66dd7681165")
+    version("0.5.0", sha256="4c285a5585c94d32c305444af934f0078b6a8ba91464f3f85807c91cd499d195")
 
     with when("@0.15.1:"):
         depends_on("python@3.7:", type=("build", "run"))

var/spack/repos/builtin/packages/python/package.py

@@ -59,7 +59,9 @@ class Python(Package):
 
     license("0BSD")
 
+    version("3.13.1", sha256="1513925a9f255ef0793dbf2f78bb4533c9f184bdd0ad19763fd7f47a400a7c55")
     version("3.13.0", sha256="12445c7b3db3126c41190bfdc1c8239c39c719404e844babbd015a1bc3fafcd4")
+    version("3.12.8", sha256="5978435c479a376648cb02854df3b892ace9ed7d32b1fead652712bee9d03a45")
     version("3.12.5", sha256="38dc4e2c261d49c661196066edbfb70fdb16be4a79cc8220c224dfeb5636d405")
     version("3.12.4", sha256="01b3c1c082196f3b33168d344a9c85fb07bfe0e7ecfe77fee4443420d1ce2ad9")
     version("3.12.3", sha256="a6b9459f45a6ebbbc1af44f5762623fa355a0c87208ed417628b379d762dddb0")

var/spack/repos/builtin/packages/rccl/package.py

@@ -111,7 +111,7 @@ class Rccl(CMakePackage):
     ]:
         depends_on(f"rocm-core@{ver}", when=f"@{ver}")
 
-    depends_on("googletest@1.11.0:", when="@5.3:")
+    depends_on("googletest@1.11.0:", type="test", when="@5.3:")
 
     @classmethod
     def determine_version(cls, lib):
@@ -138,10 +138,10 @@ def cmake_args(self):
             args.append(self.define_from_variant("AMDGPU_TARGETS", "amdgpu_target"))
 
         if self.spec.satisfies("^cmake@3.21.0:3.21.2"):
-            args.append(self.define("__skip_rocmclang", "ON"))
+            args.append(self.define("__skip_rocmclang", True))
 
         if self.spec.satisfies("@5.3.0:"):
-            args.append(self.define("BUILD_TESTS", "ON"))
+            args.append(self.define("BUILD_TESTS", self.run_tests))
         return args
 
     def test_unit(self):

var/spack/repos/builtin/packages/rivet/package.py

@@ -21,6 +21,7 @@ class Rivet(AutotoolsPackage):
     version("4.0.2", sha256="65a3b36f42bff782ed2767930e669e09b140899605d7972fc8f77785b4a882c0")
     version("4.0.1", sha256="4e8692d6e8a53961c77983eb6ba4893c3765cf23f705789e4d865be4892eff79")
     version("4.0.0", sha256="d3c42d9b83ede3e7f4b534535345c2e06e6dafb851454c2b0a5d2331ab0f04d0")
+    version("3.1.11", sha256="cc023712425ff15c55298cd6d6bb5d09116fe6616791b457de60888b75291465")
     version("3.1.10", sha256="458b8e0df1de738e9972d24b260eaa087df12c99d4fe9dee5377d47ea6a49919")
     version("3.1.9", sha256="f6532045da61eeb2adc20a9abc4166b4b2d41ab2c1ca5b500cd616bb1b92e7b1")
     version("3.1.8", sha256="75b3f3d419ca6388d1fd2ec0eda7e1f90f324b996ccf0591f48a5d2e28dccc13")
@@ -38,10 +39,12 @@ class Rivet(AutotoolsPackage):
     depends_on("c", type="build")  # generated
     depends_on("cxx", type="build")  # generated
 
+    # The backported fix introduced an unguarded include of a HepMC3 header in
+    # 3.1.11 and as of version 4 HepMC2 is no longer supported
     variant(
         "hepmc",
         default="2",
-        values=(conditional("2", when="@:3"), "3"),
+        values=(conditional("2", when="@:3.1.10"), "3"),
         description="HepMC version to link against",
     )
 
@@ -62,6 +65,7 @@ class Rivet(AutotoolsPackage):
     depends_on("yoda@1.9.8:", when="@3.1.8:")
     depends_on("yoda@1.9.9:", when="@3.1.9:")
     depends_on("yoda@1.9.10:", when="@3.1.10:")
+    depends_on("yoda@1.9.11:", when="@3.1.11:")
     depends_on("yoda@:1", when="@:3")
     depends_on("yoda@2.0.1:", when="@4.0.0:")
 
@@ -71,8 +75,15 @@ class Rivet(AutotoolsPackage):
 
     depends_on("hepmc", when="hepmc=2")
     depends_on("hepmc3", when="hepmc=3")
+    # The fix for working around patch-level zero issues have landed in 4.0.1
+    # and have also been back-ported to 3.1.11. Hence we need to exclude 4.0.0
+    # explicitly and catch the rest with versions up to 3.1.10
+    # See: https://gitlab.com/hepcedar/rivet/-/merge_requests/904
+    # and: https://gitlab.com/hepcedar/rivet/-/merge_requests/912
     conflicts(
-        "hepmc@3.3.0", when="@:4.0.0 hepmc=3", msg="patch-level zero requires at least 4.0.1"
+        "^hepmc@3.1.0,3.2.0,3.3.0",
+        when="@:3.1.10,4.0.0 hepmc=3",
+        msg="HepMC 3.x.0 requires at least 3.1.11 or 4.0.1",
     )
     depends_on("fastjet plugins=cxx")
     depends_on("fastjet@3.4.0:", when="@3.1.7:")

var/spack/repos/builtin/packages/rust/package.py

@@ -206,10 +206,10 @@ def configure(self, spec, prefix):
         configure(*flags)
 
     def build(self, spec, prefix):
-        python("./x.py", "build")
+        python("./x.py", "build", "-j", str(make_jobs))
 
     def install(self, spec, prefix):
-        python("./x.py", "install")
+        python("./x.py", "install", "-j", str(make_jobs))
 
     # known issue: https://github.com/rust-lang/rust/issues/132604
     unresolved_libraries = ["libz.so.*"]

var/spack/repos/builtin/packages/slate/package.py

@@ -6,10 +6,10 @@
 
 
 class Slate(CMakePackage, CudaPackage, ROCmPackage):
-    """The Software for Linear Algebra Targeting Exascale (SLATE) project is
-    to provide fundamental dense linear algebra capabilities to the US
+    """The Software for Linear Algebra Targeting Exascale (SLATE) project
+    provides fundamental dense linear algebra capabilities to the US
     Department of Energy and to the high-performance computing (HPC) community
-    at large. To this end, SLATE will provide basic dense matrix operations
+    at large. To this end, SLATE provides basic dense matrix operations
     (e.g., matrix multiplication, rank-k update, triangular solve), linear
     systems solvers, least square solvers, singular value and eigenvalue
     solvers."""

var/spack/repos/builtin/packages/snakemake/package.py

@@ -158,6 +158,9 @@ class Snakemake(PythonPackage):
     )
     depends_on("py-requests", when="+http", type=("build", "run"))
 
+    # snakemake.common.tests requires pytest
+    skip_modules = ["snakemake.common.tests"]
+
     def test_run(self):
         """Test if snakemake runs with the version option"""
         Executable(self.prefix.bin.snakemake)("--version")

var/spack/repos/builtin/packages/thepeg/package.py

@@ -70,8 +70,9 @@ class Thepeg(AutotoolsPackage):
     depends_on("hepmc3", when="hepmc=3")
     conflicts("hepmc=3", when="@:2.1", msg="HepMC3 support was added in 2.2.0")
     depends_on("fastjet", when="@2.0.0:")
-    depends_on("rivet@:3 hepmc=2", when="@2.0.3: +rivet hepmc=2")
-    depends_on("rivet@:3 hepmc=3", when="@2.0.3: +rivet hepmc=3")
+    depends_on("rivet hepmc=2", when="@2.0.3: +rivet hepmc=2")
+    depends_on("rivet hepmc=3", when="@2.0.3: +rivet hepmc=3")
+    depends_on("rivet@:3", when="@:2.2 +rivet")
     depends_on("boost +test", when="@2.1.1:")
 
     depends_on("autoconf", type="build")

var/spack/repos/builtin/packages/util-linux/missing-errno-header.patch

@@ -0,0 +1,11 @@
+diff -ruN spack-src/misc-utils/lsfd.c spack-src-patched/misc-utils/lsfd.c
+--- spack-src/misc-utils/lsfd.c	2024-07-04 07:54:41.236242042 +0000
++++ spack-src-patched/misc-utils/lsfd.c	2025-01-07 01:30:52.719740516 +0000
+@@ -37,6 +37,7 @@
+ #include <sys/uio.h>
+ #include <linux/sched.h>
+ #include <sys/syscall.h>
++#include <errno.h>
+ 
+ #ifdef HAVE_LINUX_KCMP_H
+ #  include <linux/kcmp.h>

var/spack/repos/builtin/packages/util-linux/package.py

@@ -50,6 +50,8 @@ class UtilLinux(AutotoolsPackage):
 
     depends_on("bash", when="+bash", type="run")
 
+    patch("missing-errno-header.patch", when="@2.40.2")
+
     def url_for_version(self, version):
         url = "https://www.kernel.org/pub/linux/utils/util-linux/v{0}/util-linux-{1}.tar.gz"
         return url.format(version.up_to(2), version)

var/spack/repos/builtin/packages/wayland-protocols/package.py

@@ -10,8 +10,8 @@ class WaylandProtocols(MesonPackage, AutotoolsPackage):
     """wayland-protocols contains Wayland protocols that add functionality not
     available in the Wayland core protocol. Such protocols either add
     completely new functionality, or extend the functionality of some other
-    protocol either in Wayland core, or some other protocol i
-    n wayland-protocols."""
+    protocol either in Wayland core, or some other protocol in
+    wayland-protocols."""
 
     homepage = "https://wayland.freedesktop.org/"
     url = "https://gitlab.freedesktop.org/wayland/wayland-protocols/-/archive/1.20/wayland-protocols-1.20.tar.gz"
@@ -28,6 +28,8 @@ class WaylandProtocols(MesonPackage, AutotoolsPackage):
 
     license("MIT")
 
+    version("1.39", sha256="42c16435dfc83f320ff727b6d446bb0d4feb361dc11796a2c5d3c0fb6532a517")
+    version("1.38", sha256="a6069948458a1d86cea2b33a9735e67d7524118c32c388d75efb881a9e9d2cd9")
     version("1.37", sha256="c3b215084eb4cf318415533554c2c2714e58ed75847d7c3a8e50923215ffbbf3")
     version("1.36", sha256="c839dd4325565fd59a93d6cde17335357328f66983c2e1fb03c33e92d6918b17")
     version("1.35", sha256="6e62dfa92ce82487d107b76064cfe2d7ca107c87c239ea9036a763d79c09105a")
@@ -54,6 +56,7 @@ class WaylandProtocols(MesonPackage, AutotoolsPackage):
 
     with when("build_system=meson"):
         depends_on("meson@0.55:")
+        depends_on("meson@0.58:", when="@1.38:")
 
     depends_on("pkgconfig", type="build")
     depends_on("wayland")

var/spack/repos/builtin/packages/wayland/package.py

@@ -30,6 +30,8 @@ class Wayland(MesonPackage, AutotoolsPackage):
 
     license("MIT")
 
+    version("1.23.1", sha256="158ec49af498f2558c7fbf7e8b070d010d4e270cc6076003a18a6c813f87e244")
+    version("1.23.0", sha256="7c5c28fa73f22d1c5021e17e1148f29ab17bf8b776a406f1c4489d3e2992ec3a")
     version("1.22.0", sha256="bbca9c906a8fb8992409ebf51812f19e2a784b2c169d4b784cdd753b4bb448ef")
     version("1.21.0", sha256="53b7fa67142e653820030ec049971bcb5e84ac99e05cba5bcb9cb55f43fae4b3")
     version("1.20.0", sha256="20523cd6f2c18c3c86725467157c6221e19de76fbfad944042a2d494af3c7a92")
@@ -49,6 +51,7 @@ class Wayland(MesonPackage, AutotoolsPackage):
 
     with when("build_system=meson"):
         depends_on("meson@0.56.0:", type="build")
+        depends_on("meson@0.57.0:", type="build", when="@1.23:")
 
     depends_on("pkgconfig", type="build")
     depends_on("libxml2")

var/spack/repos/builtin/packages/xnnpack/package.py

@@ -14,26 +14,63 @@ class Xnnpack(CMakePackage):
 
     license("BSD-3-Clause")
 
-    version("master", branch="master")
-    version("2022-02-16", commit="ae108ef49aa5623b896fc93d4298c49d1750d9ba")  # py-torch@1.12
+    version("master", branch="master", deprecated=True)
+    version("2024-02-29", commit="fcbf55af6cf28a4627bcd1f703ab7ad843f0f3a2")  # py-torch@2.3:
+    version("2022-12-22", commit="51a987591a6fc9f0fc0707077f53d763ac132cbf")  # py-torch@2.0:2.2
+    version("2022-02-16", commit="ae108ef49aa5623b896fc93d4298c49d1750d9ba")  # py-torch@1.12:1.13
     version("2021-06-21", commit="79cd5f9e18ad0925ac9a050b00ea5a36230072db")  # py-torch@1.10:1.11
     version("2021-02-22", commit="55d53a4e7079d38e90acd75dd9e4f9e781d2da35")  # py-torch@1.8:1.9
     version("2020-03-23", commit="1b354636b5942826547055252f3b359b54acff95")  # py-torch@1.6:1.7
     version("2020-02-24", commit="7493bfb9d412e59529bcbced6a902d44cfa8ea1c")  # py-torch@1.5
 
-    depends_on("c", type="build")  # generated
-    depends_on("cxx", type="build")  # generated
-
     generator("ninja")
-    depends_on("cmake@3.5:", type="build")
-    depends_on("python", type="build")
 
+    depends_on("c", type="build")
+    depends_on("cxx", type="build")
+
+    with default_args(type="build"):
+        depends_on("cmake@3.15:", when="@2022-04-26:")
+        depends_on("cmake@3.12:", when="@2022-02-15:")
+        depends_on("cmake@3.5:")
+        depends_on("python")
+
+    # Resources must be exact commit
+    # https://github.com/google/XNNPACK/issues/4023
+
+    # cmake/DownloadCLog.cmake
+    resource(
+        name="clog",
+        url="https://github.com/pytorch/cpuinfo/archive/4b5a76c4de21265ddba98fc8f259e136ad11411b.zip",
+        sha256="6000cf2a0befe428d97ea921372397d049889cbd8a4cd5b93390c71415dd3b68",
+        destination="deps",
+        placement="clog",
+        when="@2022-12-22:2023-01-17",
+    )
     resource(
         name="clog",
         url="https://github.com/pytorch/cpuinfo/archive/d5e37adf1406cf899d7d9ec1d317c47506ccb970.tar.gz",
         sha256="3f2dc1970f397a0e59db72f9fca6ff144b216895c1d606f6c94a507c1e53a025",
         destination="deps",
         placement="clog",
+        when="@:2022-02-16",
+    )
+
+    # cmake/DownloadCpuinfo.cmake
+    resource(
+        name="cpuinfo",
+        url="https://github.com/pytorch/cpuinfo/archive/d6860c477c99f1fce9e28eb206891af3c0e1a1d7.zip",
+        sha256="a615cac78fad03952cc3e1fd231ce789a8df6e81a5957b64350cb8200364b385",
+        destination="deps",
+        placement="cpuinfo",
+        when="@2024-02-29:",
+    )
+    resource(
+        name="cpuinfo",
+        url="https://github.com/Maratyszcza/cpuinfo/archive/0a38bc5cf17837bf3b536b57b9d35a259b6b2283.zip",
+        sha256="fc79c33f10b7dcb710c5eb0fcd7fe4467bf98cdc6ff1925883b175fbb800c53e",
+        destination="deps",
+        placement="cpuinfo",
+        when="@2022-12-22",
     )
     resource(
         name="cpuinfo",
@@ -41,6 +78,33 @@ class Xnnpack(CMakePackage):
         sha256="2a160c527d3c58085ce260f34f9e2b161adc009b34186a2baf24e74376e89e6d",
         destination="deps",
         placement="cpuinfo",
+        when="@2021-02-22:2022-02-16",
+    )
+    resource(
+        name="cpuinfo",
+        url="https://github.com/pytorch/cpuinfo/archive/d6c0f915ee737f961915c9d17f1679b6777af207.tar.gz",
+        sha256="146fc61c3cf63d7d88db963876929a4d373f621fb65568b895efa0857f467770",
+        destination="deps",
+        placement="cpuinfo",
+        when="@2020-03-23",
+    )
+    resource(
+        name="cpuinfo",
+        url="https://github.com/pytorch/cpuinfo/archive/d5e37adf1406cf899d7d9ec1d317c47506ccb970.tar.gz",
+        sha256="3f2dc1970f397a0e59db72f9fca6ff144b216895c1d606f6c94a507c1e53a025",
+        destination="deps",
+        placement="cpuinfo",
+        when="@2020-02-24",
+    )
+
+    # cmake/DownloadFP16.cmake
+    resource(
+        name="fp16",
+        url="https://github.com/Maratyszcza/FP16/archive/0a92994d729ff76a58f692d3028ca1b64b145d91.zip",
+        sha256="e66e65515fa09927b348d3d584c68be4215cfe664100d01c9dbc7655a5716d70",
+        destination="deps",
+        placement="fp16",
+        when="@2024-02-29:",
     )
     resource(
         name="fp16",
@@ -48,21 +112,45 @@ class Xnnpack(CMakePackage):
         sha256="e66e65515fa09927b348d3d584c68be4215cfe664100d01c9dbc7655a5716d70",
         destination="deps",
         placement="fp16",
+        when="@2021-06-21:2022-12-22",
     )
+    resource(
+        name="fp16",
+        url="https://github.com/Maratyszcza/FP16/archive/3c54eacb74f6f5e39077300c5564156c424d77ba.zip",
+        sha256="0d56bb92f649ec294dbccb13e04865e3c82933b6f6735d1d7145de45da700156",
+        destination="deps",
+        placement="fp16",
+        when="@2021-02-22",
+    )
+    resource(
+        name="fp16",
+        url="https://github.com/Maratyszcza/FP16/archive/ba1d31f5eed2eb4a69e4dea3870a68c7c95f998f.tar.gz",
+        sha256="9764297a339ad73b0717331a2c3e9c42a52105cd04cab62cb160e2b4598d2ea6",
+        destination="deps",
+        placement="fp16",
+        when="@:2020-03-23",
+    )
+
+    # cmake/DownloadFXdiv.cmake
     resource(
         name="fxdiv",
         url="https://github.com/Maratyszcza/FXdiv/archive/b408327ac2a15ec3e43352421954f5b1967701d1.zip",
         sha256="ab7dfb08829bee33dca38405d647868fb214ac685e379ec7ef2bebcd234cd44d",
         destination="deps",
         placement="fxdiv",
+        when="@2021-02-22:",
     )
     resource(
-        name="pthreadpool",
-        url="https://github.com/Maratyszcza/pthreadpool/archive/545ebe9f225aec6dca49109516fac02e973a3de2.zip",
-        sha256="8461f6540ae9f777ce20d1c0d1d249e5e61c438744fb390c0c6f91940aa69ea3",
+        name="fxdiv",
+        url="https://github.com/Maratyszcza/FXdiv/archive/f8c5354679ec2597792bc70a9e06eff50c508b9a.tar.gz",
+        sha256="7d3215bea832fe77091ec5666200b91156df6724da1e348205078346325fc45e",
         destination="deps",
-        placement="pthreadpool",
+        placement="fxdiv",
+        when="@:2020-03-23",
     )
+
+    # cmake/DownloadPSimd.cmake
+    # Not listed in newer versions but FP16 needs it
     resource(
         name="psimd",
         url="https://github.com/Maratyszcza/psimd/archive/10b4ffc6ea9e2e11668f86969586f88bc82aaefa.tar.gz",
@@ -71,14 +159,59 @@ class Xnnpack(CMakePackage):
         placement="psimd",
     )
 
+    # cmake/DownloadPThreadPool.cmake
+    resource(
+        name="pthreadpool",
+        url="https://github.com/Maratyszcza/pthreadpool/archive/4fe0e1e183925bf8cfa6aae24237e724a96479b8.zip",
+        sha256="a4cf06de57bfdf8d7b537c61f1c3071bce74e57524fe053e0bbd2332feca7f95",
+        destination="deps",
+        placement="pthreadpool",
+        when="@2024-02-29:",
+    )
+    resource(
+        name="pthreadpool",
+        url="https://github.com/Maratyszcza/pthreadpool/archive/43edadc654d6283b4b6e45ba09a853181ae8e850.zip",
+        sha256="e6370550a1abf1503daf3c2c196e0a1c2b253440c39e1a57740ff49af2d8bedf",
+        destination="deps",
+        placement="pthreadpool",
+        when="@2022-12-22",
+    )
+    resource(
+        name="pthreadpool",
+        url="https://github.com/Maratyszcza/pthreadpool/archive/545ebe9f225aec6dca49109516fac02e973a3de2.zip",
+        sha256="8461f6540ae9f777ce20d1c0d1d249e5e61c438744fb390c0c6f91940aa69ea3",
+        destination="deps",
+        placement="pthreadpool",
+        when="@2021-02-22:2022-02-16",
+    )
+    resource(
+        name="pthreadpool",
+        url="https://github.com/Maratyszcza/pthreadpool/archive/ebd50d0cfa3664d454ffdf246fcd228c3b370a11.zip",
+        sha256="ca4fc774cf2339cb739bba827de8ed4ccbd450c4608e05329e974153448aaf56",
+        destination="deps",
+        placement="pthreadpool",
+        when="@2020-03-23",
+    )
+    resource(
+        name="pthreadpool",
+        url="https://github.com/Maratyszcza/pthreadpool/archive/7ad026703b3109907ad124025918da15cfd3f100.tar.gz",
+        sha256="96eb4256fc438b7b8cab40541d383efaf546fae7bad380c24ea601c326c5f685",
+        destination="deps",
+        placement="pthreadpool",
+        when="@2020-02-24",
+    )
+
+    # May be possible to disable NEON dot product instructions
+    # https://github.com/google/XNNPACK/issues/1551
+    conflicts("%gcc@:8")
+
     # https://github.com/google/XNNPACK/pull/2797
     patch("2797.patch", when="@:2022-03-27")
 
     def cmake_args(self):
         # TODO: XNNPACK has a XNNPACK_USE_SYSTEM_LIBS option, but it seems to be broken
         # See https://github.com/google/XNNPACK/issues/1543
-        return [
-            self.define("CLOG_SOURCE_DIR", join_path(self.stage.source_path, "deps", "clog")),
+        args = [
             self.define(
                 "CPUINFO_SOURCE_DIR", join_path(self.stage.source_path, "deps", "cpuinfo")
             ),
@@ -88,7 +221,16 @@ def cmake_args(self):
                 "PTHREADPOOL_SOURCE_DIR", join_path(self.stage.source_path, "deps", "pthreadpool")
             ),
             self.define("PSIMD_SOURCE_DIR", join_path(self.stage.source_path, "deps", "psimd")),
-            self.define("BUILD_SHARED_LIBS", True),
-            self.define("XNNPACK_BUILD_TESTS", False),
+            # https://github.com/pytorch/pytorch/blob/main/cmake/Dependencies.cmake
+            self.define("XNNPACK_LIBRARY_TYPE", "static"),
             self.define("XNNPACK_BUILD_BENCHMARKS", False),
+            self.define("XNNPACK_BUILD_TESTS", False),
+            self.define("CMAKE_POSITION_INDEPENDENT_CODE", True),
         ]
+
+        if self.spec.satisfies("@:2023-01-17"):
+            args.append(
+                self.define("CLOG_SOURCE_DIR", join_path(self.stage.source_path, "deps", "clog"))
+            )
+
+        return args

var/spack/repos/builtin/packages/yoda/package.py

@@ -19,6 +19,7 @@ class Yoda(AutotoolsPackage):
     version("2.0.2", sha256="31a41413641189814ff3c6bbb96ac5d17d2b68734fe327d06794cdbd3a540399")
     version("2.0.1", sha256="ae5a78eaae5574a5159d4058839d0983c9923558bfc88fbce21d251fd925d260")
     version("2.0.0", sha256="680f43dabebb3167ce1c5dee72d1c2c285c3190751245aa51e3260a005a99575")
+    version("1.9.11", sha256="a9c632f45925e30a3c75cd23a1a04aa4f527419256a4dad499f9c4f026477b5e")
     version("1.9.10", sha256="0a708ee9d704945d3387cc437b15ffddf382c70fe5bab39ed2bdbf83c2c28c6f")
     version("1.9.9", sha256="ebcad55369a1cedcee3a2de059407c851652ba44495113f5c09d8c2e57f516aa")
     version("1.9.8", sha256="7bc3062468abba50aff3ecb8b22ce677196036009890688ef4533aaa7f92e6e4")