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282 Commits

Author SHA1 Message Date
Gregory Becker
1b4ff30665 clean up post rebase 2023-06-14 11:18:41 -07:00
Gregory Becker
c10797718a fixup after rebase 2023-06-13 12:11:27 -07:00
becker33
81ea29b007 [@spackbot] updating style on behalf of becker33 2023-06-13 11:54:00 -07:00
Gregory Becker
d8666a7fdf !fixup 511dd5a968c23f3f0c660b0cc5216415e60c6018 2023-06-13 11:54:00 -07:00
Gregory Becker
7c41bba6f8 error causation in separate file loaded for debug only 2023-06-13 11:53:58 -07:00
Gregory Becker
20e9fe3785 solver: nodes directly caused by dependency conditions 2023-06-13 11:51:01 -07:00
Gregory Becker
401218b4f1 solver: reorder code so it's easier to instrument for debugging 2023-06-13 11:50:57 -07:00
Gregory Becker
adfc1c0896 error messages: add causation for conflicting variants error 2023-06-13 11:49:45 -07:00
Gregory Becker
f4402c1cde error messages: print cause tree as part of error 2023-06-13 11:48:02 -07:00
Gregory Becker
c1d6d93388 error-chaining: expand to additional error messages 2023-06-13 11:44:54 -07:00
Gregory Becker
e9012c7781 solver: first prototype of chained error messages for one message type 2023-06-13 11:42:05 -07:00
Gregory Becker
59acfe4f0b solver: treat literals as conditions 2023-06-13 11:28:47 -07:00
Gregory Becker
004ff9d4e2 error messages: compute connections between conditions 2023-06-13 11:28:47 -07:00
Gregory Becker
9d20be5fe5 solver: remove indirection for dependency conditions 2023-06-13 11:28:47 -07:00
Gregory Becker
edc07dab27 solver: remove indirection for external conditions 2023-06-13 11:28:47 -07:00
Gregory Becker
acde8ef104 solver: remove indirection for provider conditions 2023-06-13 11:28:47 -07:00
Massimiliano Culpo
ed76966a3a gnupg: add v2.4.2 (#38059)
* gnupg: add v2.4.2

* [@spackbot] updating style on behalf of alalazo

---------

Co-authored-by: alalazo <alalazo@users.noreply.github.com>
2023-06-02 09:28:54 -07:00
willdunklin
2015a51d1a sz: add versions v2.1.12.5 and v2.1.12.4 (#38060) 2023-06-02 09:28:05 -05:00
Manuela Kuhn
34b8fe827e py-flask: add 2.3.2, py-blinker: add 1.6.2, py-werkzeug: add 2.3.4 (#38025) 2023-06-02 05:57:22 -04:00
Manuela Kuhn
6f1ed9b2e4 py-exceptiongroup: add 1.1.1 (#38018) 2023-06-02 05:47:49 -04:00
M. Eric Irrgang
dd00f50943 Add py-gmxapi version 0.4.2 (#38053) 2023-06-02 03:07:34 -04:00
Sam Grayson
f0ec625321 singularityce: add v3.11.3 (#38055) 2023-06-02 08:04:39 +02:00
Manuela Kuhn
d406c371a8 py-formulaic: add 0.6.1 (#38035) 2023-06-01 19:23:15 -04:00
Sean Koyama
42d374a34d double-batched-fft-library: patch to add search paths to findOpenCL.cmake (#36355)
* double-batched-fft-library: PATCH: add search paths to find libOpenCL

* Apply patch up to version 0.3.6
2023-06-01 16:17:04 -07:00
Sean Koyama
d90e4fcc3d lua-luafilesystem: update source URL and improve rockspec detection (#36692)
* lua-luafilesystem: updated sources to new URL. Changed versioning to dot-separated versions.

* lua-luafilesystem: override install phase to find correct rockspec

* lua-luafilesystem: improved rockspec detection

* lua-luafilesystem: added lua version constraint for older versions
2023-06-01 16:15:42 -07:00
Manuela Kuhn
a44fde9dc9 py-docutils: add 0.20.1 (#38001) 2023-06-01 18:18:29 -04:00
Manuela Kuhn
9ac8841dab py-fonttools: add 4.39.4 (#38027) 2023-06-01 18:13:20 -04:00
Manuela Kuhn
a1f87638ec py-future: add 0.18.3 (#38041)
* py-future: add 0.18.3

* Update var/spack/repos/builtin/packages/py-future/package.py

Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>

---------

Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>
2023-06-01 17:48:13 -04:00
Manuela Kuhn
3b55e0a65d py-executing: add 1.2.0 (#38019) 2023-06-01 17:38:09 -04:00
Massimiliano Culpo
42667fe7fa Memoize a few hot functions during module file generation (#37739) 2023-06-01 13:36:42 -07:00
Ted Stern
cd27611d2f Adding libpsm3 package (#37444)
* Adding libpsm3 package
* Make changes suggested by flake8
* Make one more flake8-suggested change, blank line after 'import os'
* Change to standard header to pass flake8 tests
* Update doc string, remove unnecessary comments
* Reviewer-recommende changes
* Alphabetize variants
* Use helper functions
* Change quotes to pass spack style check
2023-06-01 13:01:43 -07:00
Massimiliano Culpo
b111d2172e py-archspec: add v0.2.1 (#38014) 2023-06-01 14:58:45 -05:00
Tobias Ribizel
055263fa3c Fix OpenCV detection on Ubuntu (#35336)
* fix OpenCV detection on Ubuntu

* Update package.py

* Simplify version detection

* remove superfluous `return`
2023-06-01 14:38:17 -05:00
Manuela Kuhn
f34f207bdc py-datalad-neuroimaging: add 0.3.3 (#38017) 2023-06-01 14:31:54 -05:00
snehring
0c9f0fd40d openssh: depend on krb5+shared when +gssapi (#38034) 2023-06-01 13:17:44 -04:00
pauleonix
24d5b1e645 asio: Add stable versions up to 1.28.0 (#38007)
Co-authored-by: Mikael Simberg <mikael.simberg@iki.fi>

- Add pkgconfig dependency from 1.23.0 onward.
- Add conflict of old versions with new gcc due to missing includes.
- Deprecate uneven minor versions because they are not regarded as stable.
- Add maintainer
2023-06-01 11:09:27 +02:00
Mikael Simberg
616f7bcaef pika: add 0.16.0 and pika-algorithms 0.1.3 (#38021)
* pika: add 0.16.0

* pika-algorithms: add 0.1.3

---------

Co-authored-by: Alberto Invernizzi <9337627+albestro@users.noreply.github.com>
2023-06-01 04:18:26 -04:00
Greg Becker
dace0316a2 Spec.format: print false attributes if requested (#37932) 2023-06-01 09:08:45 +02:00
Greg Sjaardema
3bb86418b8 seacas: add 2023-05 release, update fmt dependency (#38008)
The fmt dependency for the previous release was incorrect as does not work with latest lib::fmt.  Fixed that specification
2023-06-01 02:48:50 -04:00
Veselin Dobrev
6f6489a2c7 xSDK examples v0.4.0 (#37295)
* [xsdk-examples] Initial commit for v0.4.0

* [xsdk-examples] v0.4.0 depends on xsdk@0.8.0

* add in missing xsdk dependencies

* [xsdk-examples] remove repeated 'depends_on' directive

* [xsdk-examples] simplify and extend a bit the package

[mfem] process more optional dependencies of HiOp

[strumpack, superlu-dist] add a workaround for an issue on Mac

* [mfem] fix the handling of the hiop dependency

* [@spackbot] updating style on behalf of v-dobrev

* [xsdk-examples] enable 'heffte' and 'tasmanian' if enabled in 'xsdk'

* [xsdk-examples] Add PUMI dependency

* [xsdk-examples] Add preCICE dependency

* [xsdk-examples] add +rocm

* heffte: add in a backport fix for building xsdk-examples with cuda

* [xsdk] Remove the explicit requirement for deal.II to be built +hdf5

* ENABLE_ROCM -> ENABLE_HIP

* [hiop] Workaround for CMake not finding Cray's BLAS (libsci)

[xsdk-examples] Set CUDA/HIP architectures; sync cuda/rocm variants with xsdk

* [@spackbot] updating style on behalf of v-dobrev

* [exago] Workaround for CMake not finding Cray's LAPACK/BLAS, libsci

[mfem] Tweaks for running tests under Flux and PBS

* [slate] Pass CUDA/HIP architectures to CMake

* [heffte] For newer CMake versions, set CMAKE_CUDA_ARCHITECTURES

* [hypre] Patch v2.26.0 to fix sequential compilation in 'src/seq_mv'

* [xsdk-examples] Some tweaks in dependencies and compilers used

* [xsdk] Make the 'trilinos' variant sticky

[xsdk-examples] Tweak dependencies

* [slate] Fix copy-paste error

* [xsdk-examples] Workaround for CMakePackage not having the legacy
   property 'build_directory'

* [xsdk-examples] Replace the testing branch used temporarily for v0.4.0 with
                the official release

---------

Co-authored-by: Satish Balay <balay@mcs.anl.gov>
2023-05-31 21:57:53 -04:00
Brian Van Essen
543b697df1 CachedCMakePackage: add CUDA/HIP options and improve independent builds (#37592)
* Add CMake options for building with CUDA/HIP support to
  CachedCMakePackages (intended to reduce duplication across packages
  building with +hip/+cuda and using CachedCMakePackage)
* Define generic variables like CMAKE_PREFIX_PATH for
  CachedCMakePackages (so that a user may invoke "cmake" themselves
  without needing to setthem on the command line).
* Make `lbann` a CachedCMakePackage.

Co-authored-by: Chris White <white238@llnl.gov>
2023-05-31 17:35:11 -07:00
QuellynSnead
042dc2e1d8 libtheora: enforce math library (libm.so) linkage (#37891) 2023-05-31 13:45:11 -07:00
Mosè Giordano
f745e49d9a julia: add patch to fix printing of BigFloat with MPFR v4.2 (#37992) 2023-05-31 15:32:12 -04:00
Michael Kuhn
eda21cdfba gcc: add 11.4.0 (#37988) 2023-05-31 09:15:45 -04:00
Adam J. Stewart
bc8b026072 py-pandas: add v2.0.2 (#38005) 2023-05-30 22:48:51 -04:00
Tiziano Müller
0f84782fcc Bugfix: cray manifest parsing regression (#37909)
fa7719a changed syntax for specifying exact versions, which are
required for some compiler specs (including those read as part
of parsing a Cray manifest). This fixes that and also makes a
couple other improvements to manifest parsing.

* Instantiate compiler specs with exact versions (fixes #37893)
* fix slingshot network detection (CPE 22.10+ has libcxi.so
  in /usr/lib64)
* "spack external find": add arg to ignore default dir for cray
  manifests
2023-05-30 18:03:44 -07:00
AMD Toolchain Support
43b86ce282 HPL: amdalloc with AOCC 4.0 (#37757)
* adding amdalloc when using aocc 4


* adding and libm for aocc3.2
2023-05-30 16:40:41 -07:00
AMD Toolchain Support
d30698d9a8 cp2k fixes for aocc (#37758) 2023-05-30 16:33:00 -07:00
Massimiliano Culpo
8e9efa86c8 Simplify implementation of "get_compiler_config" (#37989) 2023-05-30 15:11:33 -07:00
Jack Morrison
84faf5a6cf intel-mpi-benchmarks: Add MPI implementation check variant (#37363)
* Add MPI implementation check variant to Intel MPI Benchmarks

* [@spackbot] updating style on behalf of jack-morrison
2023-05-30 16:37:58 -05:00
Eric Berquist
9428749a3c Update SST packages to 13.0.0 (#37467)
* add sst-{core,elements,macro} v13.0.0

* Add newest DUMPI versions and remove unavailable ones

* update maintainer lists

* sst-core: tracking and profiling flags

* sst-elements with Pin requires the Pin location

* sst-core: Zoltan integration was removed in version 12

* spack style fixes

* sst-core: ensure Python is in the sst{sim,info}.x rpaths

* sst-macro: update homepage and maintainers

* spack style --fix
2023-05-30 16:35:33 -05:00
Michael Kuhn
efdac68c28 julia: fix build for @1.8.4:1.8.5 (#37990)
julia@1.8.4:1.8.5 fails to build because it does not find libstdc++ (see https://github.com/JuliaLang/julia/issues/47987).
2023-05-30 13:49:15 -07:00
Carlos Bederián
5398c31e82 ucx: add 1.14.1 (#37991) 2023-05-30 13:46:39 -07:00
Thomas Madlener
188168c476 podio: Add 0.16.5 tag (#37994) 2023-05-30 13:39:15 -07:00
Michael Kuhn
4af84ac208 gobject-introspection: add 1.76.1 (#37995) 2023-05-30 13:37:53 -07:00
Manuela Kuhn
deb8b51098 py-dunamai: add 1.17.0 (#38003) 2023-05-30 15:34:15 -04:00
Manuela Kuhn
0d582b2ea9 py-duecredit: add 0.9.2 (#38002) 2023-05-30 15:33:54 -04:00
Manuela Kuhn
f88b01c34b py-datalad-container: add 1.2.0 (#38000) 2023-05-30 15:28:34 -04:00
Manuela Kuhn
0533c6a1b8 py-datalad-metalad: add 0-4-17 and new dep py-datalad-deprecated (#37993)
* py-datalad-metalad: add 0-4-17 and new dep py-datalad-deprecated

* Fix style
2023-05-30 15:18:15 -04:00
Manuela Kuhn
f73d5c2b0e py-cryptography: add 40.0.2 (#37925)
* py-cryptography: add 40.0.2

* Add pkgconfig dependency
2023-05-30 10:26:17 -05:00
Tamara Dahlgren
567d0ee455 tests/hdf5: convert to new stand-alone test process (#35732) 2023-05-29 16:56:17 +02:00
Tamara Dahlgren
577df6f498 sqlite: convert to new stand-alone test process (#37722) 2023-05-29 07:59:23 -04:00
Harmen Stoppels
8790efbcfe Remove patchelf self-relocation (#33834) 2023-05-29 13:14:24 +02:00
Tamara Dahlgren
212b1edb6b tests/biobambam2: convert to new stand-alone test process (#35696) 2023-05-29 12:54:38 +02:00
snehring
d85a27f317 sentieon-genomics: replacing square brackets in help (#37622) 2023-05-29 12:52:36 +02:00
Chris White
5622afbfd1 amgx: add v2.2.0 and v2.3.0 (#37567) 2023-05-29 12:42:36 +02:00
Carlos Bederián
f345038317 nwchem: fix non-fftw fftw-api providers (#37442) 2023-05-29 12:41:41 +02:00
Michael Kuhn
e43d4cfee0 glib: add 2.76.3 and 2.76.2, update build systems (#37226)
This also converts the package to the new way of handling multiple build
systems.

Co-authored-by: michaelkuhn <michaelkuhn@users.noreply.github.com>
2023-05-29 06:38:57 -04:00
Vanessasaurus
7070658e2a Automated deployment to update package flux-core 2023-05-15 (#37684)
Co-authored-by: github-actions <github-actions@users.noreply.github.com>
2023-05-29 12:35:22 +02:00
dependabot[bot]
fc4b032fb4 build(deps): bump codecov/codecov-action from 3.1.3 to 3.1.4 (#37688)
Bumps [codecov/codecov-action](https://github.com/codecov/codecov-action) from 3.1.3 to 3.1.4.
- [Release notes](https://github.com/codecov/codecov-action/releases)
- [Changelog](https://github.com/codecov/codecov-action/blob/main/CHANGELOG.md)
- [Commits](894ff025c7...eaaf4bedf3)

---
updated-dependencies:
- dependency-name: codecov/codecov-action
  dependency-type: direct:production
  update-type: version-update:semver-patch
...

Signed-off-by: dependabot[bot] <support@github.com>
Co-authored-by: dependabot[bot] <49699333+dependabot[bot]@users.noreply.github.com>
2023-05-29 12:34:34 +02:00
Vanessasaurus
8c97d8ad3f add flux-security variant to flux-core (#37689)
This will build flux-security separately to have a flux-imp
that can be defined in a flux broker.toml. Note that the user
that wants a multi-user setup is recommended to create a view,
and then a system/broker.toml in flux config directory that
points to it.

Signed-off-by: vsoch <vsoch@users.noreply.github.com>
Co-authored-by: vsoch <vsoch@users.noreply.github.com>
2023-05-29 12:34:07 +02:00
Alberto Invernizzi
26107fe6b2 highfive: add newer versions + add git repo (#37635)
* add versions
* add develop pointing to git@master
2023-05-29 06:09:02 -04:00
Tamara Dahlgren
9278c0df21 binutils: convert to new stand-alone test process (#37690) 2023-05-29 11:59:09 +02:00
Tamara Dahlgren
37e95713f4 libsigsegv: convert to new stand-alone test process (#37691) 2023-05-29 11:58:39 +02:00
SXS Bot
3ae8a3a517 spectre: add v2023.05.16 (#37716)
Co-authored-by: sxs-bot <sxs-bot@users.noreply.github.com>
2023-05-29 11:56:21 +02:00
Tamara Dahlgren
031af84e90 m4: convert to new stand-alone test process (#37723) 2023-05-29 11:49:28 +02:00
Annop Wongwathanarat
7d4b65491d armpl-gcc: add version 23.04.1 (#37907) 2023-05-29 05:49:19 -04:00
Harmen Stoppels
3038d1e7cd Use @= in some packages (#37737)
Change the pattern @x.y:x.y.0 -> @=x.y

Co-authored-by: haampie <haampie@users.noreply.github.com>
2023-05-29 11:47:00 +02:00
Lehman Garrison
b2e6ef97ce hdfview: add 3.1.4, 3.2.0, 3.3.0. Update dependencies. (#37745) 2023-05-29 11:41:44 +02:00
Tamara Dahlgren
e55236ce5b tests/arborx: convert to new stand-alone test process (#37778)
Co-authored-by: Andrey Prokopenko <andrey.prok@gmail.com>
2023-05-29 11:33:07 +02:00
Alec Scott
68dfd6ba6e hbase: add v2.5.3 (#37518)
Co-authored-by: Tamara Dahlgren <35777542+tldahlgren@users.noreply.github.com>
2023-05-29 11:29:11 +02:00
Jim Galarowicz
38d2459f94 survey: add v1.0.8 (#37385) 2023-05-29 11:26:56 +02:00
Nicolas Cornu
e309f367af catch2: new versions (#37742) 2023-05-29 11:26:06 +02:00
Harmen Stoppels
3b59c95323 fix InternalConcretizerError msg (#37791) 2023-05-29 11:24:43 +02:00
Howard Pritchard
fddaeadff8 OPENMPI: disable use of sphinx (#37717)
Sphinx is used to build Open MPI manpages, etc. as part of the make dist
process to create release tarballs.  There should be no need/use to do
this within Spack.  Also some sites have older Sphinx installs which
aren't compatible with the needs of the Open MPI documentation.
For example, attempts to install openmpi@main fail at NERSC owing to
such a situation.

Since Spack normally is used to build from release tarballs, in which
the docs have already been installed, this should present no issues.

This configuration option will be ignored for older than 5.0.0 Open MPI releases.

Signed-off-by: Howard Pritchard <howardp@lanl.gov>
2023-05-29 11:23:42 +02:00
Joel Falcou
c85eaf9dc5 Add package for KUMI tuple library (#37795) 2023-05-29 11:23:06 +02:00
Brian Vanderwende
ddec7f8aec bbcp: fix cloning "master" version (#37802) 2023-05-29 11:21:48 +02:00
AMD Toolchain Support
f057d7154b NAMD: add AVXTILES support (#37040) 2023-05-29 11:10:09 +02:00
Tamara Dahlgren
a102950d67 berkeley-db: convert to new stand-alone test process (#35702) 2023-05-29 10:56:42 +02:00
Howard Pritchard
783be9b350 dealii - add platform-introspection variant (#37833)
This option is needed for DFT FE - or more accurately the check needs to
be checked off for a number of platforms or else the code doesn't work.

Signed-off-by: Howard Pritchard <howardp@lanl.gov>
2023-05-29 10:56:03 +02:00
Juan Miguel Carceller
27c8135207 xrootd: add patch for when libraries are installed in lib64 (#37858)
Co-authored-by: jmcarcell <jmcarcell@users.noreply.github.com>
2023-05-29 10:36:57 +02:00
Tamara Dahlgren
77ce4701b9 Bugfix/tests: add slash to test log message (#37874) 2023-05-29 10:36:36 +02:00
Juan Miguel Carceller
73ad3f729e dd4hep: add patch to fix missing hits when using LCIO (#37854)
Co-authored-by: jmcarcell <jmcarcell@users.noreply.github.com>
2023-05-29 10:35:14 +02:00
Jim Edwards
1e7a64ad85 parallelio: add v2.6.0 release and ncint variant (#37805) 2023-05-29 10:19:15 +02:00
Tamara Dahlgren
3a5864bcdb tests/sip: convert to new stand-alone test process (#35693) 2023-05-29 10:16:35 +02:00
Alec Scott
7e13a7dccb cbc: add v2.10.9 (#37974) 2023-05-29 04:04:28 -04:00
Alec Scott
e3249fa155 bedops: add v2.4.41 (#37972) 2023-05-29 04:04:06 -04:00
Thomas-Ulrich
0c20760576 pumi: fix simmodsuite base variant, and mpi lib name (#37401) 2023-05-29 09:59:32 +02:00
Alec Scott
7ee7995493 cracklib: add v2.9.9 (#37976) 2023-05-29 03:59:13 -04:00
Alec Scott
ba1fac1c31 cpio: add v2.14 (#37975) 2023-05-29 03:58:53 -04:00
Adam J. Stewart
b05f0ecb6f py-segmentation-models-pytorch: add v0.3.3 (#37970) 2023-05-29 09:48:32 +02:00
Alec Scott
d5c66b75c3 cyrus-sasl: add v2.1.28 (#37978) 2023-05-29 09:31:54 +02:00
Alec Scott
98303d6956 double-conversion: add v3.3.0 (#37979) 2023-05-29 09:31:38 +02:00
Alec Scott
4622d638a6 elfio: add v3.11 (#37980) 2023-05-29 09:31:23 +02:00
Alec Scott
02023265fc erfa: add v2.0.0 (#37981) 2023-05-29 09:31:09 +02:00
Alec Scott
8a075998f8 erlang: add v26.0 (#37982) 2023-05-29 09:30:28 +02:00
Alec Scott
f2f48b1872 fasttransforms: add v0.6.2 (#37983) 2023-05-29 09:30:10 +02:00
Alec Scott
168d63c447 glog: add v0.6.0 (#37985) 2023-05-29 09:29:34 +02:00
Alec Scott
c25d4cbc1d gradle: add v8.1.1 (#37986) 2023-05-29 09:29:07 +02:00
snehring
ccb07538f7 Beast2: add v2.7.4, add javafx (#37419) 2023-05-29 09:28:32 +02:00
Alec Scott
1356b13b2f form: add v4.3.1 (#37984) 2023-05-29 09:24:34 +02:00
Tamara Dahlgren
935f862863 tests/flibcpp: convert to new stand-alone test process (#37782) 2023-05-28 10:47:23 +02:00
Tamara Dahlgren
9f6d9df302 patchelf: convert to new stand-alone test process (#37831) 2023-05-28 10:46:23 +02:00
Tamara Dahlgren
65d33c02a1 gasnet: convert to new stand-alone test process (#35727) 2023-05-28 10:45:11 +02:00
Tamara Dahlgren
40073e7b21 hdf: convert to new stand-alone test process (#37843) 2023-05-28 10:44:42 +02:00
Tamara Dahlgren
752e02e2f2 tests/upcxx: convert to new stand-alone test process (#37832)
Co-authored-by: Dan Bonachea <dobonachea@lbl.gov>
2023-05-28 10:44:04 +02:00
Vanessasaurus
d717b3a33f Automated deployment to update package flux-core 2023-05-04 (#37421)
Co-authored-by: github-actions <github-actions@users.noreply.github.com>
2023-05-28 10:42:44 +02:00
Bruno Turcksin
9817f24c9a kokkos-nvcc-wrapper: Remove unnecessary dependencies (#37794) 2023-05-28 10:19:30 +02:00
Bruno Turcksin
1f7c4b0557 Kokkos: remove unused variants (#37800) 2023-05-28 10:18:53 +02:00
Xavier Delaruelle
6c42d2b7f7 modules: improve default naming scheme (#37808)
Change default naming scheme for tcl modules for a more user-friendly
experience. 

Change from flat projection to "per software name" projection.

Flat naming scheme restrains module selection capabilities. The
`{name}/{version}...` scheme make possible to use user-friendly
mechanisms:

* implicit defaults (`module load git`)
* extended default (`module load git/2`)
* advanced version specifiers (`module load git@2:`)
2023-05-28 10:06:30 +02:00
Tamara Dahlgren
8df036a5a5 tests/cmake: convert to new stand-alone test process (#37724) 2023-05-28 09:59:21 +02:00
dependabot[bot]
582ebee74c build(deps): bump actions/setup-python from 4.6.0 to 4.6.1 (#37894)
Bumps [actions/setup-python](https://github.com/actions/setup-python) from 4.6.0 to 4.6.1.
- [Release notes](https://github.com/actions/setup-python/releases)
- [Commits](57ded4d7d5...bd6b4b6205)

---
updated-dependencies:
- dependency-name: actions/setup-python
  dependency-type: direct:production
  update-type: version-update:semver-patch
...

Signed-off-by: dependabot[bot] <support@github.com>
Co-authored-by: dependabot[bot] <49699333+dependabot[bot]@users.noreply.github.com>
2023-05-28 09:58:14 +02:00
Annop Wongwathanarat
1017b9ddde acfl: add version 23.04.1 and fix checksums for 22.1 (#37908)
Checksums for 22.1 need updates due to an IT incident at developer.arm.com. The package tarballs needed to be recreated.
2023-05-28 09:57:31 +02:00
Thomas Madlener
80ae73119d whizard: Fix parallel build race condition (#37890) 2023-05-28 09:55:52 +02:00
Tamara Dahlgren
1d88f690a4 tests/darshan-runtime: convert to new stand-alone test process (#37838) 2023-05-28 09:46:31 +02:00
Filippo Spiga
fbb271d804 Adding NVIDIA HPC SDK 23.5 (#37913) 2023-05-28 09:45:08 +02:00
Hao Lyu
d6aac873b7 copy namelist and xml to ./bin (#37933) 2023-05-28 09:43:27 +02:00
Tamara Dahlgren
ab3ffd9361 archer: convert to new stand-alone test process (#35697) 2023-05-28 09:41:38 +02:00
Tamara Dahlgren
3b9454a5cc tests/bolt: convert to new stand-alone test process (#35695)
* bolt: convert to new stand-alone test process
* Remove redundant test_requires_compiler (so above directives)
2023-05-27 18:46:11 -07:00
Tamara Dahlgren
c8eb0f9361 tests/amrex: convert to new stand-alone test process (#35698)
* amrex: convert to new stand-alone test process
* smoke->stand-alone
2023-05-27 18:44:06 -07:00
George Young
fb0f14eb06 py-macs2: add 2.2.8, updated dependencies (#37944)
* py-macs2: add 2.2.8, updated dependencies

* Update package.py

---------

Co-authored-by: LMS Bioinformatics <bioinformatics@lms.mrc.ac.uk>
2023-05-27 14:29:12 -05:00
George Young
e489ee4e2e py-cutadapt: add 4.4, 4.3, 4.2 versions (#37929)
* py-cutadapt: add 4.4, 4.3, 4.2 versions

* Update var/spack/repos/builtin/packages/py-cutadapt/package.py

Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>

* Update var/spack/repos/builtin/packages/py-cutadapt/package.py

Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>

* Update package.py

---------

Co-authored-by: LMS Bioinformatics <bioinformatics@lms.mrc.ac.uk>
Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>
2023-05-27 14:27:43 -05:00
Alex Richert
fcd49f2f08 Add shared and pic variants to libtiff (#37965)
* Add static-only option for libtiff

* update libtiff to add pic variant

* fix libtiff pic setting
2023-05-27 11:24:27 -05:00
Alex Richert
b3268c2703 freetype: add pic and shared variants (#37898) 2023-05-27 01:05:10 +02:00
George Young
d1bfcfafe3 py-multiqc: add 1.14, bump dependencies (#37946)
Co-authored-by: LMS Bioinformatics <bioinformatics@lms.mrc.ac.uk>
2023-05-26 17:55:03 -05:00
Manuela Kuhn
490c9f5e16 py-datalad-metadata-model: add 0.3.10 (#37937) 2023-05-26 17:28:36 -05:00
Manuela Kuhn
85628d1474 py-debugpy: add 1.6.7 (#37941) 2023-05-26 17:27:50 -05:00
Manuela Kuhn
720c34d18d py-distro: add 1.8.0 (#37942) 2023-05-26 17:27:06 -05:00
mschouler
cd175377ca Update melissa build (#37609)
* Remove deprecated package

* Add up-to-date melissa builds

* Remove blank lines and FIXME comments

* Use directive syntax for maintainers and remove unnecessary comments

* Remove unused function

* Deprecate former melissa recipe

* Change melissa python package name

* Update setuptools and rapidjson dependencies versions

* Fix mypy error

* Restore rapidjson version

* Variant simplification

* Make variants lower case

* Deprecate former omitted version

* Make torch version consistent with requirement file

* Fix variants definition

* Fix style error

---------

Co-authored-by: Marc Schouler <marc.schouler@inria.fr>
2023-05-26 17:26:29 -05:00
Manuela Kuhn
b91ec05e13 py-coloredlogs: add 15.0.1 and py-humanfriendly: add 10.0 (#37905) 2023-05-26 17:22:02 -05:00
Manuela Kuhn
3bb15f420b py-contourpy: add 1.0.7 (#37914) 2023-05-26 17:19:40 -05:00
Manuela Kuhn
124a81df5b py-coverage: add 5.5 (#37922) 2023-05-26 17:06:39 -05:00
Lee James O'Riordan
d9472c083d Update py-pennylane ecosystem to support v0.30.0 (#37763)
* Update PennyLane ecosystem for 0.30 release

* Update package dep versions

* Fix formatting

* Update dep versions

* Remove PL hard pin and rely on PLQ to define version

* Update var/spack/repos/builtin/packages/py-pennylane-lightning-kokkos/package.py

Co-authored-by: Vincent Michaud-Rioux <vincent.michaud-rioux@xanadu.ai>

* Convert pybind11 from build to link dep, and PL ver limit

---------

Co-authored-by: Vincent Michaud-Rioux <vincent.michaud-rioux@xanadu.ai>
2023-05-26 16:55:21 -05:00
Manuela Kuhn
ac2a5ef4dd py-beautifulsoup4: add 4.12.2 (#37820) 2023-05-26 16:54:43 -05:00
Manuela Kuhn
ea210a6acf py-chardet: add 5.1.0 (#37879)
* py-chardet: add 5.1.0

* Remove py-setuptools as run dependency
2023-05-26 16:51:54 -05:00
kwryankrattiger
afb3bef7af CI: Use relative path in default script (#36649) 2023-05-26 14:28:48 -06:00
George Young
b5b5881426 picard: add 3.0.0, switch to java@17: (#37948)
Co-authored-by: LMS Bioinformatics <bioinformatics@lms.mrc.ac.uk>
2023-05-26 15:38:26 -04:00
George Young
76fc7915a8 minimap2: adding 2.26 (#37945)
Co-authored-by: LMS Bioinformatics <bioinformatics@lms.mrc.ac.uk>
2023-05-26 10:12:14 -07:00
George Young
e7798b619b hyphy: add 2.5.51hf, update dependencies for switch to MPI (#37938)
Co-authored-by: LMS Bioinformatics <bioinformatics@lms.mrc.ac.uk>
2023-05-26 09:48:26 -07:00
Kai Torben Ohlhus
8ecef12a20 Strip inactive maintainer. (#36048) 2023-05-26 10:47:39 -04:00
Brian Spilner
694292ebbf cdo: add 2.2.0 (#37244) 2023-05-26 10:01:49 +02:00
Howard Pritchard
7f18f6f8a1 PMIx and PRRTe: disabled use of sphinx (#37750)
Related to https://github.com/spack/spack/pull/37717

No need to be rebuilding openmpi man pages and other docs in
spack as it almost always is used with release tarballs.

See #37717 for more details.

Signed-off-by: Howard Pritchard <howardp@lanl.gov>
2023-05-26 09:49:02 +02:00
John W. Parent
0b12a480eb Windows MSVC: do not set sdk version if installing sdk (#37930)
Note the win-sdk package is not installable and reports an error
which instructs the user how to add it. Without this fix, a
(more confusing) error occurs before this message can be generated.
2023-05-25 21:38:04 -04:00
George Young
2d91a79af3 fastp: add version 0.23.3, add build dependencies (#37931)
Co-authored-by: LMS Bioinformatics <bioinformatics@lms.mrc.ac.uk>
2023-05-25 21:28:13 -04:00
Leonard-Anderson-NNL
72fcee7227 gradle:add 7.3 (#37928)
Co-authored-by: Cloud User <leonardanderson@leonardander001.hzterscemazurawp3xenxzahla.bx.internal.cloudapp.net>
2023-05-25 20:55:09 -04:00
John W. Parent
d147ef231f Windows: fix "spack build-env" (#37923)
"spack build-env" was not generating proper environment variable
definitions on Windows; this commit updates the generated commands
to succeed with batch/PowerShell.
2023-05-25 17:08:15 -07:00
eugeneswalker
1c7af83d32 update ci ml darwin keypath (#37927) 2023-05-25 16:27:56 -07:00
John W. Parent
b982dfc071 Windows CI: add paraview deps nightly build (#37924)
Add a nightly job to attempt building all Paraview dependencies and
upload the results to cdash. This check doesn't affect the reported
build/test status of Spack. We are using this to monitor the state of
Windows support while working on more-robust checks (eventually the
Windows build will have to succeed to merge PRs to Spack).
2023-05-25 16:13:41 -07:00
H. Joe Lee
c0da8a00fc fix(protobuf-c): set version bound for protobuf dependency (#37917)
Fix #37887 GitLab CI failure.
2023-05-25 19:08:54 -04:00
H. Joe Lee
3f18f689d8 fix(dpdk): add a new version 23.03. (#37919)
Fix E4S GitLab CI issue #37887.
2023-05-25 18:58:41 -04:00
Simon Pintarelli
9dc4553cf3 sirius: add rocsolver/wannier90 (#37900)
* sirius: add rocsolver dependency for 7.5:
* add wannier90
2023-05-25 15:58:04 -07:00
Tim Haines
9a99c94b75 Dyninst: add standalone test (#37876)
* Dyninst: add standalone test
* Add docstring with description
* Don't use join_path for builtin path objects
* Whitespace
* Update format of docstring
2023-05-25 18:48:52 -04:00
John W. Parent
682f0b2a54 Protobuf package: CMake fix for Windows build (#37926)
Qualify reference with namespace. A pending upstream PR will eventually
make this unnecessary, so the patch is only applied for 3.22. versions.
2023-05-25 15:41:16 -07:00
Richard Berger
dbab0c1ff5 flecsi: disable cinch dependency for v1 release (#37857)
* flecsi: disable cinch dependency for v1 releases
* [@spackbot] updating style on behalf of rbberger

---------

Co-authored-by: rbberger <rbberger@users.noreply.github.com>
2023-05-25 14:59:45 -07:00
Xavier Delaruelle
2bf95f5340 environment-modules: fix @main version requirements (#37807)
Some requirements for @main version of environment-modules were missing:

* python (to build ChangeLog documentation file)
* py-sphinx@1.0: (to build man-pages, etc)

Also adding gzip, which is now required to build ChangeLog.gz (which is
now shipped instead of ChangeLog).

Other versions are not requiring these tools (as documentation is
pre-built in dist tarball).
2023-05-25 22:29:26 +02:00
Tamara Dahlgren
55561405b8 Bugfix/tests: write not append stand-alone test status (#37841) 2023-05-25 12:36:24 -07:00
H. Joe Lee
8eef458cea fix(pmdk): add pkconfig as dependency (#37896)
Fix #37887 failure.
2023-05-25 10:35:48 -07:00
Stephen Sachs
64eea9d996 [devito] Move to version 4.8.1 (#37915)
* [devito] Move to version 4.8.1

* Fix: Adding patch file

* Update var/spack/repos/builtin/packages/py-devito/package.py

Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>

* Update var/spack/repos/builtin/packages/py-devito/package.py

Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>

* Addressing @adamjstewart comments

---------

Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>
2023-05-25 13:33:10 -04:00
Alex Richert
60b4e2128b Add shared variant to geos package (#37899)
Co-authored-by: alexrichert <alexrichert@gmail.com>
2023-05-25 11:42:51 -04:00
Adam J. Stewart
2f8cea2792 Add macOS ML CI stacks (#36586)
* Add macOS ML CI stacks

* torchmeta is no longer maintained and requires ancient PyTorch

* Add MXNet

* update darwin aarch64 stacks

* add darwin-aarch64 scoped config.yaml

* remove unnecessary cleanup job

* fix specifications

* fix labels

* fix labels

* fix indent on tags specification

* no tags for trigger jobs

* try overriding tags in stack spack.yaml

* do not use CI_STACK_CONFIG_SCOPES

* incorporate config:install_tree:root: overrides and compiler defs

* copy relevant ci-scoped config settings directly into stack spack.yaml

* remove build-job-remove

* spack ci generate: add debug flag

* include cdash config directly in stack spack.yaml

* customize build-job script section to avoid absolute paths

* add any-job specification

* tags: use aarch64-macos instead of aarch64

* generate tags: use aarch64-macos instead of aarch64

* do not add morepadding

* use shared mirror; comment out known failures

* remove any-job

* nproc || true

* comment out specs failing due to bazel from cache codesign issue

---------

Co-authored-by: eugeneswalker <eugenesunsetwalker@gmail.com>
2023-05-25 01:12:54 -04:00
M. Eric Irrgang
06f9bcf734 Update for py-gmxapi for 0.4.1. (#37834)
* Update for py-gmxapi for 0.4.1.

* Note 0.4.1 hash from PyPI.
* Note relaxed dependencies for future versions.

* Update var/spack/repos/builtin/packages/py-gmxapi/package.py
2023-05-24 22:03:10 -05:00
Manuela Kuhn
ee2725762f py-charset-normalizer: add 3.1.0 (#37880) 2023-05-24 21:57:29 -05:00
Manuela Kuhn
eace0a177c py-bids-validator: add 1.11.0 (#37845) 2023-05-24 21:36:45 -05:00
Manuela Kuhn
80c7d74707 py-bottleneck: add 1.3.7 (#37847) 2023-05-24 21:36:01 -05:00
Manuela Kuhn
a6f5bf821d py-certifi: add 2023.5.7 (#37848) 2023-05-24 21:35:13 -05:00
Manuela Kuhn
b214406253 py-attrs: add 23.1.0 (#37817)
* py-attrs: add 23.1.0

* Add missing dependency
2023-05-24 20:21:31 -05:00
Manuela Kuhn
5b003d80e5 py-babel: add 2.12.1 (#37818)
* py-babel: add 2.12.1

* Update var/spack/repos/builtin/packages/py-babel/package.py

Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>

---------

Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>
2023-05-24 20:13:02 -05:00
Adam J. Stewart
185b2d3ee7 py-rasterio: add v1.3.7 (#37886) 2023-05-24 18:48:16 -04:00
Adam J. Stewart
71bb2a1899 py-lightly: add v1.4.6 (#37885) 2023-05-24 16:43:07 -04:00
Nathalie Furmento
785c31b730 starpu: add release 1.4.1 (#37883) 2023-05-24 09:36:56 -07:00
QuellynSnead
175da4a88a paraview (protobuf failure) #37437 (#37440)
When attempting to build paraview@5.10.1 using a recent Intel
compiler (Classic or OneAPI) or the IBM XL compiler, the build
fails if the version of protobuf used is > 3.18
2023-05-24 11:09:48 -05:00
willdunklin
73fc1ef11c sensei: Allow Paraview 5.11 for sensei develop version (#37719) 2023-05-24 11:00:35 -05:00
Stephen Sachs
2d77e44f6f Pcluster local buildcache (#37852)
* [pcluster pipeline] Use local buildcache instead of upstream spack

Spack currently does not relocate compiler references from upstream spack
installations. When using a buildcache we don't need an upstream spack.

* gcc needs to be installed via postinstall to get correct deps

* quantum-espresso@gcc@12.3.0 returns ICE on neoverse_{n,v}1

* Force gitlab to pull the new container

* Revert "Force gitlab to pull the new container"

This reverts commit 3af5f4cd88.

Seems the gitlab version does not yet support "pull_policy" in .gitlab-ci.yml

* Gitlab keeps picking up wrong container. Renaming

* Update containers once more after failed build
2023-05-24 06:55:00 -07:00
Greg Becker
033599c4cd bugfix: env concretize after remove (#37877) 2023-05-24 15:41:57 +02:00
Harmen Stoppels
8096ed4b22 spack remove: fix traversal when user specs intersect (#37882)
drop unnecessary double loop over the matching user specs.
2023-05-24 09:23:46 -04:00
Simon Pintarelli
b49bfe25af update nlcglib package (#37578) 2023-05-24 11:17:15 +02:00
Houjun Tang
8b2f34d802 Add async vol v1.6 (#37875) 2023-05-24 01:47:46 -04:00
H. Joe Lee
3daed0d6a7 hdf5-vol-daos: add a new package (#35653)
* hdf5-vol-daos: add a new package
* hdf5-vol-daos: address @soumagne review

---------

Co-authored-by: Tamara Dahlgren <35777542+tldahlgren@users.noreply.github.com>
2023-05-23 23:42:42 -04:00
Glenn Johnson
d6c1f75e8d julia: remove myself from maintainers list (#37868) 2023-05-23 16:22:56 -05:00
Laura Weber
c80a4c1ddc Updated hash for latest maintenance release (2022.2.1) (#37842) 2023-05-23 14:08:55 -07:00
Glenn Johnson
466abcb62d gate: remove myself as maintainer (#37862) 2023-05-23 14:03:52 -07:00
Glenn Johnson
69e99f0c16 Remove myself as maintainer of R packages (#37859)
* Remove myself as maintainer of R packages
  I will no longer have the time to properly maintain these packages.
* fix flake8 test for import
2023-05-23 15:35:32 -05:00
Glenn Johnson
bbee6dfc58 bart: remove myself as maintainer (#37860) 2023-05-23 16:08:07 -04:00
Glenn Johnson
2d60cf120b heasoft: remove myself as maintainer (#37866) 2023-05-23 14:37:57 -05:00
Glenn Johnson
db17fc2f33 opencv: remove myself from maintainers list (#37870) 2023-05-23 14:34:52 -05:00
eugeneswalker
c62080d498 e4s ci: add dealii (#32484) 2023-05-23 21:34:31 +02:00
Glenn Johnson
f9bbe549fa gatetools: remove myself as maintainer (#37863) 2023-05-23 15:32:54 -04:00
H. Joe Lee
55d7fec69c daos: add a new package (#35649) 2023-05-23 21:30:23 +02:00
Glenn Johnson
e938907150 reditools: remove myself as maintainer (#37871) 2023-05-23 15:28:16 -04:00
Glenn Johnson
0c40b86e96 itk: remove myself as maintainer (#37867) 2023-05-23 15:27:55 -04:00
Glenn Johnson
3d4cf0d8eb mumax: remove myself as maintainer (#37869) 2023-05-23 15:23:28 -04:00
Glenn Johnson
966e19d278 gurobi: remove myself as maintainer (#37865) 2023-05-23 15:23:05 -04:00
Glenn Johnson
8f930462bd fplo: remove myself as maintainer (#37861) 2023-05-23 15:17:50 -04:00
kjrstory
bf4fccee15 New package: FDS (#37850) 2023-05-23 11:59:05 -07:00
Manuela Kuhn
784771a008 py-bleach: add 6.0.0 (#37846) 2023-05-23 11:50:53 -07:00
Glenn Johnson
e4a9d9ae5b Bioc updates (#37297)
* add version 1.48.0 to bioconductor package r-a4
* add version 1.48.0 to bioconductor package r-a4base
* add version 1.48.0 to bioconductor package r-a4classif
* add version 1.48.0 to bioconductor package r-a4core
* add version 1.48.0 to bioconductor package r-a4preproc
* add version 1.48.0 to bioconductor package r-a4reporting
* add version 1.54.0 to bioconductor package r-absseq
* add version 1.30.0 to bioconductor package r-acde
* add version 1.78.0 to bioconductor package r-acgh
* add version 2.56.0 to bioconductor package r-acme
* add version 1.70.0 to bioconductor package r-adsplit
* add version 1.72.0 to bioconductor package r-affxparser
* add version 1.78.0 to bioconductor package r-affy
* add version 1.76.0 to bioconductor package r-affycomp
* add version 1.58.0 to bioconductor package r-affycontam
* add version 1.72.0 to bioconductor package r-affycoretools
* add version 1.48.0 to bioconductor package r-affydata
* add version 1.52.0 to bioconductor package r-affyilm
* add version 1.70.0 to bioconductor package r-affyio
* add version 1.76.0 to bioconductor package r-affyplm
* add version 1.46.0 to bioconductor package r-affyrnadegradation
* add version 1.48.0 to bioconductor package r-agdex
* add version 3.32.0 to bioconductor package r-agilp
* add version 2.50.0 to bioconductor package r-agimicrorna
* add version 1.32.0 to bioconductor package r-aims
* add version 1.32.0 to bioconductor package r-aldex2
* add version 1.38.0 to bioconductor package r-allelicimbalance
* add version 1.26.0 to bioconductor package r-alpine
* add version 2.62.0 to bioconductor package r-altcdfenvs
* add version 2.24.0 to bioconductor package r-anaquin
* add version 1.28.0 to bioconductor package r-aneufinder
* add version 1.28.0 to bioconductor package r-aneufinderdata
* add version 1.72.0 to bioconductor package r-annaffy
* add version 1.78.0 to bioconductor package r-annotate
* add version 1.62.0 to bioconductor package r-annotationdbi
* add version 1.24.0 to bioconductor package r-annotationfilter
* add version 1.42.0 to bioconductor package r-annotationforge
* add version 3.8.0 to bioconductor package r-annotationhub
* add version 3.30.0 to bioconductor package r-aroma-light
* add version 1.32.0 to bioconductor package r-bamsignals
* add version 2.16.0 to bioconductor package r-beachmat
* add version 2.60.0 to bioconductor package r-biobase
* add version 2.8.0 to bioconductor package r-biocfilecache
* add version 0.46.0 to bioconductor package r-biocgeneric
* add version 1.10.0 to bioconductor package r-biocio
* add version 1.18.0 to bioconductor package r-biocneighbors
* add version 1.34.0 to bioconductor package r-biocparallel
* add version 1.16.0 to bioconductor package r-biocsingular
* add version 2.28.0 to bioconductor package r-biocstyle
* add version 3.17.1 to bioconductor package r-biocversion
* add version 2.56.0 to bioconductor package r-biomart
* add version 1.28.0 to bioconductor package r-biomformat
* add version 2.68.0 to bioconductor package r-biostrings
* add version 1.48.0 to bioconductor package r-biovizbase
* add version 1.10.0 to bioconductor package r-bluster
* add version 1.68.0 to bioconductor package r-bsgenome
* add version 1.36.0 to bioconductor package r-bsseq
* add version 1.42.0 to bioconductor package r-bumphunter
* add version 2.66.0 to bioconductor package r-category
* add version 2.30.0 to bioconductor package r-champ
* add version 2.32.0 to bioconductor package r-champdata
* add version 1.50.0 to bioconductor package r-chipseq
* add version 4.8.0 to bioconductor package r-clusterprofiler
* add version 1.36.0 to bioconductor package r-cner
* add version 1.32.0 to bioconductor package r-codex
* add version 2.16.0 to bioconductor package r-complexheatmap
* add version 1.74.0 to bioconductor package r-ctc
* add version 2.28.0 to bioconductor package r-decipher
* add version 0.26.0 to bioconductor package r-delayedarray
* add version 1.22.0 to bioconductor package r-delayedmatrixstats
* add version 1.40.0 to bioconductor package r-deseq2
* add version 1.46.0 to bioconductor package r-dexseq
* add version 1.42.0 to bioconductor package r-dirichletmultinomial
* add version 2.14.0 to bioconductor package r-dmrcate
* add version 1.74.0 to bioconductor package r-dnacopy
* add version 3.26.0 to bioconductor package r-dose
* add version 2.48.0 to bioconductor package r-dss
* add version 3.42.0 to bioconductor package r-edger
* add version 1.20.0 to bioconductor package r-enrichplot
* add version 2.24.0 to bioconductor package r-ensembldb
* add version 1.46.0 to bioconductor package r-exomecopy
* add version 2.8.0 to bioconductor package r-experimenthub
* add version 1.26.0 to bioconductor package r-fgsea
* add version 2.72.0 to bioconductor package r-gcrma
* add version 1.36.0 to bioconductor package r-gdsfmt
* add version 1.82.0 to bioconductor package r-genefilter
* add version 1.36.0 to bioconductor package r-genelendatabase
* add version 1.72.0 to bioconductor package r-genemeta
* add version 1.78.0 to bioconductor package r-geneplotter
* add version 1.22.0 to bioconductor package r-genie3
* add version 1.36.0 to bioconductor package r-genomeinfodb
* update r-genomeinfodbdata
* add version 1.36.0 to bioconductor package r-genomicalignments
* add version 1.52.0 to bioconductor package r-genomicfeatures
* add version 1.52.0 to bioconductor package r-genomicranges
* add version 2.68.0 to bioconductor package r-geoquery
* add version 1.48.0 to bioconductor package r-ggbio
* add version 3.8.0 to bioconductor package r-ggtree
* add version 2.10.0 to bioconductor package r-glimma
* add version 1.12.0 to bioconductor package r-glmgampoi
* add version 5.54.0 to bioconductor package r-globaltest
* update r-go-db
* add version 1.20.0 to bioconductor package r-gofuncr
* add version 2.26.0 to bioconductor package r-gosemsim
* add version 1.52.0 to bioconductor package r-goseq
* add version 2.66.0 to bioconductor package r-gostats
* add version 1.78.0 to bioconductor package r-graph
* add version 1.62.0 to bioconductor package r-gseabase
* add version 1.32.0 to bioconductor package r-gtrellis
* add version 1.44.0 to bioconductor package r-gviz
* add version 1.28.0 to bioconductor package r-hdf5array
* add version 1.72.0 to bioconductor package r-hypergraph
* add version 1.36.0 to bioconductor package r-illumina450probevariants-db
* add version 0.42.0 to bioconductor package r-illuminaio
* add version 1.74.0 to bioconductor package r-impute
* add version 1.38.0 to bioconductor package r-interactivedisplaybase
* add version 2.34.0 to bioconductor package r-iranges
* add version 1.60.0 to bioconductor package r-kegggraph
* add version 1.40.0 to bioconductor package r-keggrest
* add version 3.56.0 to bioconductor package r-limma
* add version 2.52.0 to bioconductor package r-lumi
* add version 1.76.0 to bioconductor package r-makecdfenv
* add version 1.78.0 to bioconductor package r-marray
* add version 1.12.0 to bioconductor package r-matrixgenerics
* add version 1.8.0 to bioconductor package r-metapod
* add version 2.46.0 to bioconductor package r-methylumi
* add version 1.46.0 to bioconductor package r-minfi
* add version 1.34.0 to bioconductor package r-missmethyl
* add version 1.80.0 to bioconductor package r-mlinterfaces
* add version 1.12.0 to bioconductor package r-mscoreutils
* add version 2.26.0 to bioconductor package r-msnbase
* add version 2.56.0 to bioconductor package r-multtest
* add version 1.38.0 to bioconductor package r-mzid
* add version 2.34.0 to bioconductor package r-mzr
* add version 1.62.0 to bioconductor package r-oligoclasses
* update r-org-hs-eg-db
* add version 1.42.0 to bioconductor package r-organismdbi
* add version 1.40.0 to bioconductor package r-pathview
* add version 1.92.0 to bioconductor package r-pcamethods
* update r-pfam-db
* add version 1.44.0 to bioconductor package r-phyloseq
* add version 1.62.0 to bioconductor package r-preprocesscore
* add version 1.32.0 to bioconductor package r-protgenerics
* add version 1.34.0 to bioconductor package r-quantro
* add version 2.32.0 to bioconductor package r-qvalue
* add version 1.76.0 to bioconductor package r-rbgl
* add version 2.40.0 to bioconductor package r-reportingtools
* add version 2.44.0 to bioconductor package r-rgraphviz
* add version 2.44.0 to bioconductor package r-rhdf5
* add version 1.12.0 to bioconductor package r-rhdf5filters
* add version 1.22.0 to bioconductor package r-rhdf5lib
* add version 1.76.0 to bioconductor package r-roc
* add version 1.28.0 to bioconductor package r-rots
* add version 2.16.0 to bioconductor package r-rsamtools
* add version 1.60.0 to bioconductor package r-rtracklayer
* add version 0.38.0 to bioconductor package r-s4vectors
* add version 1.8.0 to bioconductor package r-scaledmatrix
* add version 1.28.0 to bioconductor package r-scater
* add version 1.14.0 to bioconductor package r-scdblfinder
* add version 1.28.0 to bioconductor package r-scran
* add version 1.10.0 to bioconductor package r-scuttle
* add version 1.66.0 to bioconductor package r-seqlogo
* add version 1.58.0 to bioconductor package r-shortread
* add version 1.74.0 to bioconductor package r-siggenes
* add version 1.22.0 to bioconductor package r-singlecellexperiment
* add version 1.34.0 to bioconductor package r-snprelate
* add version 1.50.0 to bioconductor package r-snpstats
* add version 2.36.0 to bioconductor package r-somaticsignatures
* add version 1.12.0 to bioconductor package r-sparsematrixstats
* add version 1.40.0 to bioconductor package r-spem
* add version 1.38.0 to bioconductor package r-sseq
* add version 1.30.0 to bioconductor package r-summarizedexperiment
* add version 3.48.0 to bioconductor package r-sva
* add version 1.38.0 to bioconductor package r-tfbstools
* add version 1.22.0 to bioconductor package r-tmixclust
* add version 2.52.0 to bioconductor package r-topgo
* add version 1.24.0 to bioconductor package r-treeio
* add version 1.28.0 to bioconductor package r-tximport
* add version 1.28.0 to bioconductor package r-tximportdata
* add version 1.46.0 to bioconductor package r-variantannotation
* add version 3.68.0 to bioconductor package r-vsn
* add version 2.6.0 to bioconductor package r-watermelon
* add version 2.46.0 to bioconductor package r-xde
* add version 1.58.0 to bioconductor package r-xmapbridge
* add version 0.40.0 to bioconductor package r-xvector
* add version 1.26.0 to bioconductor package r-yapsa
* add version 1.26.0 to bioconductor package r-yarn
* add version 1.46.0 to bioconductor package r-zlibbioc
* Revert "add version 1.82.0 to bioconductor package r-genefilter"
  This reverts commit 1702071c6d.
* Revert "add version 0.38.0 to bioconductor package r-s4vectors"
  This reverts commit 58a7df2387.
* add version 0.38.0 to bioconductor package r-s4vectors
* Revert "add version 1.28.0 to bioconductor package r-aneufinder"
  This reverts commit 0a1f59de6c.
* add version 1.28.0 to bioconductor package r-aneufinder
* Revert "add version 2.16.0 to bioconductor package r-beachmat"
  This reverts commit cd49fb8e4c.
* add version 2.16.0 to bioconductor package r-beachmat
* Revert "add version 4.8.0 to bioconductor package r-clusterprofiler"
  This reverts commit 6e9a951cbe.
* add version 4.8.0 to bioconductor package r-clusterprofiler
* Fix syntax error
* r-genefilter: add version 1.82.0
* new package: r-basilisk-utils
* new package: r-basilisk
* new package: r-densvis
* new package: r-dir-expiry
* r-affyplm: add zlib dependency
* r-cner: add zlib dependency
* r-mzr: add zlib dependency
* r-rhdf5filters: add zstd dependency
* r-shortread: add zlib dependency
* r-snpstats: add zlib dependency

---------

Co-authored-by: Tamara Dahlgren <35777542+tldahlgren@users.noreply.github.com>
2023-05-23 11:40:00 -07:00
snehring
a6886983dc usalign: new package (#37646)
* usalign: adding new package
* usalign: updating shasum, adding note about distribution
2023-05-23 11:30:40 -07:00
Andrey Parfenov
93a34a9635 hpcg: apply patch with openmp pragma changes for intel and oneapi compilers (#37856)
Signed-off-by: Andrey Parfenov <andrey.parfenov@intel.com>
2023-05-23 11:52:45 -04:00
Todd Gamblin
91a54029f9 libgcrypt: patch 1.10.2 on macos (#37844)
macOS doesn't have `getrandom`, and 1.10.2 fails to compile because of this.

There's an upstream fix at https://dev.gnupg.org/T6442 that will be in the next
`libgcrypt` release, but the patch is available now.
2023-05-23 06:03:13 -04:00
Juan Miguel Carceller
5400b49ed6 dd4hep: add LD_LIBRARY_PATH for plugins for Gaudi (#37824)
Co-authored-by: jmcarcell <jmcarcell@users.noreply.github.com>
2023-05-23 10:28:26 +01:00
Juan Miguel Carceller
c17fc3c0c1 gaudi: add gaudi to LD_LIBRARY_PATH (#37821)
Co-authored-by: jmcarcell <jmcarcell@users.noreply.github.com>
2023-05-23 10:27:55 +01:00
Juan Miguel Carceller
6f248836ea dd4hep: restrict podio versions (#37699)
Co-authored-by: jmcarcell <jmcarcell@users.noreply.github.com>
2023-05-23 10:20:31 +01:00
snehring
693c1821b0 py-pastml: adding version for compatibility with py-topiary-asr (#37828) 2023-05-22 14:44:00 -05:00
Manuela Kuhn
62afe3bd5a py-asttokens: add 2.2.1 (#37816) 2023-05-22 14:40:08 -05:00
genric
53a756d045 py-dask: add v2023.4.1 (#37550)
* py-dask: add v2023.4.1

* address review comments
2023-05-22 14:29:23 -05:00
Adam J. Stewart
321b687ae6 py-huggingface-hub: add v0.14.1, cli variant (#37815) 2023-05-22 11:19:41 -07:00
Adam J. Stewart
c8617f0574 py-fiona: add v1.9.4 (#37780) 2023-05-22 13:17:13 -05:00
Adam J. Stewart
7843e2ead0 azcopy: add new package (#37693) 2023-05-22 11:09:06 -07:00
Juan Miguel Carceller
dca3d071d7 gaudi: fix issue with fmt::format (#37810)
Co-authored-by: jmcarcell <jmcarcell@users.noreply.github.com>
2023-05-22 10:33:05 -07:00
eugeneswalker
436f077482 tau %oneapi: -Wno-error=implicit-function-declaration (#37829) 2023-05-22 13:13:02 -04:00
simonleary-umass-edu
ab3f705019 deleted package.py better error message (#37814)
adds the namespace to the exception object's string representation
2023-05-22 09:59:07 -07:00
Tamara Dahlgren
d739989ec8 swig: convert to new stand-alone test process (#37786) 2023-05-22 09:39:30 -07:00
Jordan Galby
52ee1967d6 llvm: Fix hwloc@1 and hwloc@:2.3 compatibility (#35387) 2023-05-22 10:28:57 -05:00
Andrey Prokopenko
1af7284b5d arborx: new version 1.4 (#37809) 2023-05-21 12:25:53 -07:00
Todd Gamblin
e1bcefd805 Update CHANGELOG.md for v0.20.0 2023-05-21 01:48:34 +02:00
Manuela Kuhn
2159b0183d py-argcomplete: add 3.0.8 (#37797)
* py-argcomplete: add 3.0.8

* Update var/spack/repos/builtin/packages/py-argcomplete/package.py

Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>

* [@spackbot] updating style on behalf of manuelakuhn

---------

Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>
2023-05-20 11:31:28 -05:00
kwryankrattiger
078fd225a9 Mochi-Margo: Add patch for pthreads detection (#36109) 2023-05-20 07:43:27 -07:00
Manuela Kuhn
83974828c7 libtiff: disable use of sphinx (#37803) 2023-05-19 21:37:19 -05:00
Manuela Kuhn
2412f74557 py-anyio: add 3.6.2 (#37796) 2023-05-19 21:36:39 -05:00
Manuela Kuhn
db06d3621d py-alabaster: add 0.7.13 (#37798) 2023-05-19 21:34:00 -05:00
Jose E. Roman
c25170d2f9 New patch release SLEPc 3.19.1 (#37675)
* New patch release SLEPc 3.19.1

* py-slepc4py: add explicit dependency on py-numpy
2023-05-19 21:33:21 -05:00
Vanessasaurus
b3dfe13670 Automated deployment to update package flux-security 2023-05-16 (#37696)
Co-authored-by: github-actions <github-actions@users.noreply.github.com>
2023-05-19 12:07:57 -07:00
Harmen Stoppels
6358e84b48 fix binutils dep of spack itself (#37738) 2023-05-19 12:02:36 -07:00
Swann Perarnau
8e634d8e49 aml: v0.2.1 (#37621)
* aml: v0.2.1

* add version 0.2.1
* fix hip variant bug

* [fix] pkgconf required for all builds

On top of needing pkgconf for autoreconf builds, the release configure
scripts needs pkgconf do detect dependencies if any of the hwloc, ze, or
opencl variants are active.

* Remove deprecation for v0.2.0 based on PR advise.
2023-05-19 11:58:28 -07:00
Mark W. Krentel
1a21376515 intel-xed: add version 2023.04.16 (#37582)
* intel-xed: add version 2023.04.16
 1. add version 2023.04.16
 2. adjust the mbuild resource to better match the xed version at the time
 3. replace three conflicts() with one new requires() for x86_64 target
 4. add patch for libxed-ild for some new avx512 instructions
    * [@spackbot] updating style on behalf of mwkrentel
    * Fix the build for 2023.04.16.  XED requires its source directory to be exactly 'xed', so add a symlink.
 5. move the mbuild resource up one level, xed wants it to be in the same directory as the xed source dir
 6. deprecate 10.2019.03
    * semantic style fix: add OSError to except
    * [@spackbot] updating style on behalf of mwkrentel

---------

Co-authored-by: mwkrentel <mwkrentel@users.noreply.github.com>
2023-05-19 10:28:18 -07:00
Harmen Stoppels
bf45a2b6d3 spack env create: generate a view when newly created env has concrete specs (#37799) 2023-05-19 18:44:54 +02:00
Thomas-Ulrich
475ce955e7 hipsycl: add v0.9.4 (#37247) 2023-05-19 18:29:45 +02:00
Robert Underwood
5e44289787 updates for the libpressio ecosystem (#37764)
* updates for the libpressio ecosystem

* [@spackbot] updating style on behalf of robertu94

* style fix: remove FIXME

---------

Co-authored-by: Robert Underwood <runderwood@anl.gov>
Co-authored-by: eugeneswalker <eugenesunsetwalker@gmail.com>
2023-05-19 09:24:31 -07:00
Massimiliano Culpo
e66888511f archspec: fix entry in the JSON file (#37793) 2023-05-19 09:57:57 -04:00
Tamara Dahlgren
e9e5beee1f fortrilinos: convert to new stand-alone test process (#37783) 2023-05-19 08:06:33 -04:00
Tamara Dahlgren
ffd134c09d formetis: converted to new stand-alone test process (#37785) 2023-05-19 08:05:23 -04:00
Massimiliano Culpo
bfadd5c9a5 lmod: allow core compiler to be specified with a version range (#37789)
Use CompilerSpec with satisfies instead of string equality tests

Co-authored-by: Harmen Stoppels <harmenstoppels@gmail.com>
2023-05-19 13:21:40 +02:00
Greg Becker
16e9279420 compiler specs: do not print '@=' when clear from context (#37787)
Ensure that spack compiler add/find/list and lists of concrete specs
print the compiler effectively as {compiler.name}{@compiler.version}.

Co-authored-by: Harmen Stoppels <harmenstoppels@gmail.com>
2023-05-19 11:31:27 +02:00
Satish Balay
ac0903ef9f llvm: add version 16.0.3 (#37472) 2023-05-19 03:37:57 -04:00
Cyrus Harrison
648839dffd add conduit 0.8.8 release (#37776) 2023-05-19 00:34:19 -04:00
Pieter Ghysels
489a604920 Add STRUMPACK versions 7.1.2 and 7.1.3 (#37779) 2023-05-18 23:18:50 -04:00
eugeneswalker
2ac3435810 legion +rocm: apply patch for --offload-arch (#37775)
* legion +rocm: apply patch for --offload-arch

* constrain to latest version
2023-05-18 23:03:50 -04:00
Alec Scott
69ea180d26 fzf: add v0.40.0 and refactor package (#37569)
* fzf: add v0.40.0 and refactor package
* Remove unused imports
2023-05-18 15:23:20 -07:00
Alec Scott
f52f217df0 roctracer-dev-api: add v5.5.0 (#37484) 2023-05-18 15:11:36 -07:00
Alec Scott
df74aa5d7e amqp-cpp: add v4.3.24 (#37504) 2023-05-18 15:09:30 -07:00
Alec Scott
41932c53ae libjwt: add v1.15.3 (#37521) 2023-05-18 15:05:27 -07:00
Alec Scott
4296db794f rdkit: add v2023_03_1 (#37529) 2023-05-18 15:05:07 -07:00
H. Joe Lee
9ab9302409 py-jarvis-util: add a new package (#37729)
* py-jarvis-util: add a new package

* Apply suggestions from code review

Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>

---------

Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>
2023-05-18 17:28:59 -04:00
Benjamin Meyers
0187376e54 Update py-nltk (#37703)
* Update py-nltk

* [@spackbot] updating style on behalf of meyersbs

* Update var/spack/repos/builtin/packages/py-nltk/package.py

Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>

---------

Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>
2023-05-18 17:14:20 -04:00
Aditya Bhamidipati
7340d2cb83 update package nccl version 2.17, 2.18 (#37721) 2023-05-18 15:47:01 -05:00
Benjamin Meyers
641d4477d5 New package py-tensorly (#37705) 2023-05-18 15:38:23 -05:00
Benjamin Meyers
3ff2fb69af New package py-scikit-tensor-py3 (#37706) 2023-05-18 15:37:43 -05:00
vucoda
e3024b1bcb Update py-jedi 0.17.2 checksum in package.py (#37700)
Pypi for jedi-0.17.2.tar.gz does not match the package.py file.

https://pypi.org/project/jedi/0.17.2/#copy-hash-modal-60e943e3-1192-4b12-90e2-4d639cb5b4f7
2023-05-18 15:15:47 -05:00
Dom Heinzeller
e733b87865 Remove references to gmake executable, only use make (#37280) 2023-05-18 19:03:03 +00:00
Victor Lopez Herrero
919985dc1b dlb: add v3.3.1 (#37759) 2023-05-18 10:29:41 -07:00
Michael Kuhn
d746f7d427 harfbuzz: add 7.3.0 (#37753)
Do not prefer 5.3.1 anymore since it does not build with newer compilers. Linux distributions have also moved to 6.x and newer.
2023-05-18 10:27:48 -07:00
kaanolgu
b6deab515b [babelstream] FIX: maintainers list missing a comma (#37761) 2023-05-18 10:25:04 -07:00
Glenn Johnson
848220c4ba update R: add version 4.3.0 (#37090) 2023-05-18 10:13:28 -07:00
Glenn Johnson
98462bd27e Cran updates (#37296)
* add version 1.28.3 to r-hexbin
* add version 5.0-1 to r-hmisc
* add version 0.5.5 to r-htmltools
* add version 1.6.2 to r-htmlwidgets
* add version 1.4.2 to r-igraph
* add version 0.42.19 to r-imager
* add version 1.0-5 to r-inum
* add version 0.9-14 to r-ipred
* add version 1.3.2 to r-irkernel
* add version 2.2.0 to r-janitor
* add version 0.1-10 to r-jpeg
* add version 1.2.2 to r-jsonify
* add version 0.9-32 to r-kernlab
* add version 1.7-2 to r-klar
* add version 1.42 to r-knitr
* add version 1.14.0 to r-ks
* add version 2.11.0 to r-labelled
* add version 1.7.2.1 to r-lava
* add version 0.6-15 to r-lavaan
* add version 2.1.2 to r-leaflet
* add version 2.9-0 to r-lfe
* add version 1.1.6 to r-lhs
* add version 1.1-33 to r-lme4
* add version 1.5-9.7 to r-locfit
* add version 0.4.3 to r-log4r
* add version 5.6.18 to r-lpsolve
* add version 0.2-11 to r-lwgeom
* add version 2.7.4 to r-magick
* add version 1.22.1 to r-maldiquant
* add version 1.2.11 to r-mapproj
* add version 1.6 to r-markdown
* add version 7.3-59 to r-mass
* add version 1.5-4 to r-matrix
* add version 0.63.0 to r-matrixstats
* add version 4.2-3 to r-memuse
* add version 4.0-0 to r-metafor
* add version 1.8-42 to r-mgcv
* add version 3.15.0 to r-mice
* add version 0.4-5 to r-mitml
* add version 2.0.0 to r-mixtools
* add version 0.1.11 to r-modelr
* add version 1.4-23 to r-multcomp
* add version 0.1-9 to r-multcompview
* add version 0.1-13 to r-mutoss
* add version 1.18.1 to r-network
* add version 3.3.4 to r-nleqslv
* add version 3.1-162 to r-nlme
* add version 0.26 to r-nmf
* add version 0.60-17 to r-np
* add version 4.2.5.2 to r-openxlsx
* add version 2022.11-16 to r-ordinal
* add version 0.6.0.8 to r-osqp
* add version 0.9.1 to r-packrat
* add version 1.35.0 to r-parallelly
* add version 1.3-13 to r-party
* add version 1.2-20 to r-partykit
* add version 1.7-0 to r-pbapply
* add version 0.3-9 to r-pbdzmq
* add version 1.2 to r-pegas
* add version 1.5-1 to r-phytools
* add version 1.9.0 to r-pillar
* add version 1.4.0 to r-pkgbuild
* add version 2.1.0 to r-pkgcache
* add version 0.5.0 to r-pkgdepends
* add version 2.0.7 to r-pkgdown
* add version 1.3.2 to r-pkgload
* add version 0.1-8 to r-png
* add version 1.1.22 to r-polspline
* add version 1.0.1 to r-pool
* add version 1.4.1 to r-posterior
* add version 3.8.1 to r-processx
* add version 2023.03.31 to r-prodlim
* add version 1.0-12 to r-proj4
* add version 2.5.0 to r-projpred
* add version 0.1.6 to r-pryr
* add version 1.7.5 to r-ps
* add version 1.0.1 to r-purrr
* add version 1.3.2 to r-qqconf
* add version 0.25.5 to r-qs
* add version 1.60 to r-qtl
* add version 0.4.22 to r-quantmod
* add version 5.95 to r-quantreg
* add version 0.7.8 to r-questionr
* add version 1.2.5 to r-ragg
* add version 0.15.1 to r-ranger
* add version 3.6-20 to r-raster
* add version 2.2.13 to r-rbibutils
* add version 1.0.10 to r-rcpp
* add version 0.12.2.0.0 to r-rcpparmadillo
* add version 0.1.7 to r-rcppde
* add version 0.3.13 to r-rcppgsl
* add version 1.98-1.12 to r-rcurl
* add version 1.2-1 to r-rda
* add version 2.1.4 to r-readr
* add version 1.4.2 to r-readxl
* add version 1.0.6 to r-recipes
* add version 1.1.6 to r-repr
* add version 1.2.16 to r-reproducible
* add version 0.3.0 to r-require
* add version 1.28 to r-reticulate
* add version 2.0.7 to r-rfast
* add version 1.6-6 to r-rgdal
* add version 0.6-2 to r-rgeos
* add version 1.1.3 to r-rgl
* add version 0.2.18 to r-rinside
* add version 4-14 to r-rjags
* add version 1.3-1.8 to r-rjsonio
* add version 2.21 to r-rmarkdown
* add version 0.9-2 to r-rmpfr
* add version 0.7-1 to r-rmpi
* add version 6.6-0 to r-rms
* add version 0.10.25 to r-rmysql
* add version 0.8.7 to r-rncl
* add version 2.4.11 to r-rnexml
* add version 0.95-1 to r-robustbase
* add version 1.3-20 to r-rodbc
* add version 7.2.3 to r-roxygen2
* add version 1.4.5 to r-rpostgres
* add version 0.7-5 to r-rpostgresql
* add version 0.8.29 to r-rsconnect
* add version 0.4-15 to r-rsnns
* add version 2.3.1 to r-rsqlite
* add version 0.7.2 to r-rstatix
* add version 1.1.2 to r-s2
* add version 0.4.5 to r-sass
* add version 0.1.9 to r-scatterpie
* add version 0.3-43 to r-scatterplot3d
* add version 3.2.4 to r-scs
* add version 1.6-4 to r-segmented
* add version 4.2-30 to r-seqinr
* add version 0.26 to r-servr
* add version 4.3.0 to r-seurat
* add version 1.0-12 to r-sf
* add version 0.4.2 to r-sfheaders
* add version 1.1-15 to r-sfsmisc
* add version 1.7.4 to r-shiny
* add version 1.9.0 to r-signac
* add version 1.6.0.3 to r-smoof
* add version 0.1.7-1 to r-sourcetools
* add version 1.6-0 to r-sp
* add version 1.3-0 to r-spacetime
* add version 7.3-16 to r-spatial
* add version 2.0-0 to r-spatialeco
* add version 1.2-8 to r-spatialreg
* add version 3.0-5 to r-spatstat
* add version 3.0-1 to r-spatstat-data
* add version 3.1-0 to r-spatstat-explore
* add version 3.1-0 to r-spatstat-geom
* add version 3.1-0 to r-spatstat-linnet
* add version 3.1-4 to r-spatstat-random
* add version 3.0-1 to r-spatstat-sparse
* add version 3.0-2 to r-spatstat-utils
* add version 2.2.2 to r-spdata
* add version 1.2-8 to r-spdep
* add version 0.6-1 to r-stars
* add version 1.5.0 to r-statmod
* add version 4.8.0 to r-statnet-common
* add version 1.7.12 to r-stringi
* add version 1.5.0 to r-stringr
* add version 1.9.1 to r-styler
* add version 3.5-5 to r-survival
* add version 1.5-4 to r-tclust
* add version 1.7-29 to r-terra
* add version 3.1.7 to r-testthat
* add version 1.1-2 to r-th-data
* add version 1.2 to r-tictoc
* add version 1.3.2 to r-tidycensus
* add version 1.2.3 to r-tidygraph
* add version 1.3.0 to r-tidyr
* add version 2.0.0 to r-tidyverse
* add version 0.2.0 to r-timechange
* add version 0.45 to r-tinytex
* add version 0.4.1 to r-triebeard
* add version 1.0-9 to r-truncnorm
* add version 0.10-53 to r-tseries
* add version 0.8-1 to r-units
* add version 4.3.0 to r-v8
* add version 1.4-11 to r-vcd
* add version 1.14.0 to r-vcfr
* add version 0.6.2 to r-vctrs
* add version 1.1-8 to r-vgam
* add version 0.4.0 to r-vioplot
* add version 1.6.1 to r-vroom
* add version 1.72-1 to r-wgcna
* add version 0.4.1 to r-whisker
* add version 0.7.2 to r-wk
* add version 0.39 to r-xfun
* add version 1.7.5.1 to r-xgboost
* add version 1.0.7 to r-xlconnect
* add version 3.99-0.14 to r-xml
* add version 0.13.1 to r-xts
* add version 2.3.7 to r-yaml
* add version 2.3.0 to r-zip
* add version 1.8-12 to r-zoo
* r-bigmem: dependency on uuid
* r-bio3d: dependency on zlib
* r-devtools: dependency cleanup
* r-dose: dependency cleanup
* r-dss: dependency cleanup
* r-enrichplot: dependency cleanup
* r-fgsea: dependency cleanup
* r-geor: dependency cleanup
* r-ggridges: dependency cleanup
* r-lobstr: dependency cleanup
* r-lubridate: dependency cleanup
* r-mnormt: dependency cleanup
* r-sctransform: version format correction
* r-seuratobject: dependency cleanup
* r-tidyselect: dependency cleanup
* r-tweenr: dependency cleanup
* r-uwot: dependency cleanup
* new package: r-clock
* new package: r-conflicted
* new package: r-diagram
* new package: r-doby
* new package: r-httr2
* new package: r-kableextra
* new package: r-mclogit
* new package: r-memisc
* new package: r-spatstat-model
* r-rmysql: use mariadb-client
* r-snpstats: add zlib dependency
* r-qs: add zstd dependency
* r-rcppcnpy: add zlib dependency
* black reformatting
* Revert "r-dose: dependency cleanup"
  This reverts commit 4c8ae8f5615ee124fff01ce43eddd3bb5d06b9bc.
* Revert "r-dss: dependency cleanup"
  This reverts commit a6c5c15c617a9a688fdcfe2b70c501c3520d4706.
* Revert "r-enrichplot: dependency cleanup"
  This reverts commit 65e116c18a94d885bc1a0ae667c1ef07d1fe5231.
* Revert "r-fgsea: dependency cleanup"
  This reverts commit ffe2cdcd1f73f69d66167b941970ede0281b56d7.
* r-rda: this package is back in CRAN
* r-sctransform: fix copyright
* r-seurat: fix copyright
* r-seuratobject: fix copyright
* Revert "add version 6.0-94 to r-caret"
  This reverts commit 236260597de97a800bfc699aec1cd1d0e3d1ac60.
* add version 6.0-94 to r-caret
* Revert "add version 1.8.5 to r-emmeans"
  This reverts commit 64a129beb0bd88d5c88fab564cade16c03b956ec.
* add version 1.8.5 to r-emmeans
* Revert "add version 5.0-1 to r-hmisc"
  This reverts commit 517643f4fd8793747365dfcfc264b894d2f783bd.
* add version 5.0-1 to r-hmisc
* Revert "add version 1.42 to r-knitr"
  This reverts commit 2a0d9a4c1f0ba173f7423fed59ba725bac902c37.
* add version 1.42 to r-knitr
* Revert "add version 1.6 to r-markdown"
  This reverts commit 4b5565844b5704559b819d2e775fe8dec625af99.
* add version 1.6 to r-markdown
* Revert "add version 0.26 to r-nmf"
  This reverts commit 4c44a788b17848f2cda67b32312a342c0261caec.
* add version 0.26 to r-nmf
* Revert "add version 2.3.1 to r-rsqlite"
  This reverts commit 5722ee2297276e4db8beee461d39014b0b17e420.
* add version 2.3.1 to r-rsqlite
* Revert "add version 1.0-12 to r-sf"
  This reverts commit ee1734fd62cc02ca7a9359a87ed734f190575f69.
* add version 1.0-12 to r-sf
* fix syntax error
2023-05-18 09:57:43 -07:00
Cameron Stanavige
2e2515266d unifyfs: new v1.1 release (#37756)
Add v1.1 release
Update mochi-margo dependency compatible versions
Update version range of libfabric conflict
2023-05-18 09:42:27 -07:00
Chris Green
776ab13276 [xrootd] New variants, new version, improve build config (#37682)
* Add FNAL Spack team to maintainers

* New variants and configuration improvements

* Version dependent "no-systemd" patches.

* New variants `client_only`, and `davix`

* Better handling of `cxxstd` for different versions, including
  improved patching and CMake options.

* Version-specific CMake requirements.

* Better version-specific handling of `openssl` dependency.

* `py-setuptools` required for `+python` build.

* Specific enable/disable of CMake options and use of
  `-DFORCE_ENABLED=TRUE` to prevent unwanted/non-portable activation
  of features.

* Better handling of `+python` configuration.

* New version 5.5.5
2023-05-18 10:49:18 -05:00
Massimiliano Culpo
c2ce9a6d93 Bump Spack version on develop to 0.21.0.dev0 (#37760) 2023-05-18 12:47:55 +02:00
Peter Scheibel
4e3ed56dfa Bugfix: allow preferred new versions from externals (#37747) 2023-05-18 09:40:26 +02:00
Tamara Dahlgren
dcfcc03497 maintainers: switch from list to directive (#37752) 2023-05-17 22:25:57 +00:00
Stephen Sachs
125c20bc06 Add aws-plcuster[-aarch64] stacks (#37627)
Add aws-plcuster[-aarch64] stacks.  These stacks build packages defined in
https://github.com/spack/spack-configs/tree/main/AWS/parallelcluster

They use a custom container from https://github.com/spack/gitlab-runners which
includes necessary ParallelCluster software to link and build as well as an
upstream spack installation with current GCC and dependencies.

Intel and ARM software is installed and used during the build stage but removed
from the buildcache before the signing stage.

Files `configs/linux/{arch}/ci.yaml` select the necessary providers in order to
build for specific architectures (icelake, skylake, neoverse_{n,v}1).
2023-05-17 16:21:10 -06:00
Brian Van Essen
f7696a4480 Added version 1.3.1 (#37735) 2023-05-17 14:51:02 -07:00
Harmen Stoppels
a5d7667cb6 lmod: fix build, bump patch version (#37744) 2023-05-17 13:18:02 -04:00
Massimiliano Culpo
d45818ccff Limit deepcopy to just the initial "all" section (#37718)
Modifications:
- [x] Limit the scope of the deepcopy when initializing module file writers
2023-05-17 10:17:41 -07:00
Scott Wittenburg
bcb7af6eb3 gitlab ci: no copy-only pipelines w/ deprecated config (#37720)
Make it clear that copy-only pipelines are not supported while still
using the deprecated ci config format. Also ensure that the deprecated
stack does not fail on spack pipelines for tags.
2023-05-17 09:46:30 -06:00
Juan Miguel Carceller
f438fb6c79 whizard: build newer versions in parallel (#37422) 2023-05-17 17:15:50 +02:00
Harmen Stoppels
371a8a361a libxcb: depend on python, remove releases that need python 2 (#37698) 2023-05-17 17:05:30 +02:00
Tamara Dahlgren
86b9ce1c88 spack test: fix stand-alone test suite status reporting (#37602)
* Fix reporting of packageless specs as having no tests

* Add test_test_output_multiple_specs with update to simple-standalone-test (and tests)

* Refactored test status summary; added more tests or checks
2023-05-17 16:03:21 +02:00
Seth R. Johnson
05232034f5 celeritas: new version 0.2.2 (#37731)
* celeritas: new version 0.2.2

* [@spackbot] updating style on behalf of sethrj
2023-05-17 05:38:09 -04:00
Peter Scheibel
7a3da0f606 Tk/Tcl packages: speed up file search (#35902) 2023-05-17 09:27:05 +02:00
Yoshiaki Senda
d96406a161 Add recently added Spack Docker Images to documentation (#37732)
Signed-off-by: Yoshiaki Senda <yoshiaki@live.it>
2023-05-17 08:48:27 +02:00
Tamara Dahlgren
ffa5962356 emacs: convert to new stand-alone test process (#37725) 2023-05-17 00:25:35 -04:00
Massimiliano Culpo
67e74da3ba Fix spack find not able to display version ranges in compilers (#37715) 2023-05-17 00:24:38 -04:00
889 changed files with 8183 additions and 3455 deletions

View File

@@ -20,7 +20,7 @@ jobs:
runs-on: ubuntu-latest
steps:
- uses: actions/checkout@8e5e7e5ab8b370d6c329ec480221332ada57f0ab # @v2
- uses: actions/setup-python@57ded4d7d5e986d7296eab16560982c6dd7c923b # @v2
- uses: actions/setup-python@bd6b4b6205c4dbad673328db7b31b7fab9e241c0 # @v2
with:
python-version: ${{inputs.python_version}}
- name: Install Python packages
@@ -38,7 +38,7 @@ jobs:
run: |
. share/spack/setup-env.sh
$(which spack) audit packages
- uses: codecov/codecov-action@894ff025c7b54547a9a2a1e9f228beae737ad3c2 # @v2.1.0
- uses: codecov/codecov-action@eaaf4bedf32dbdc6b720b63067d99c4d77d6047d # @v2.1.0
if: ${{ inputs.with_coverage == 'true' }}
with:
flags: unittests,linux,audits

View File

@@ -0,0 +1,31 @@
name: Windows Paraview Nightly
on:
schedule:
- cron: '0 2 * * *' # Run at 2 am
defaults:
run:
shell:
powershell Invoke-Expression -Command "./share/spack/qa/windows_test_setup.ps1"; {0}
jobs:
build-paraview-deps:
runs-on: windows-latest
steps:
- uses: actions/checkout@8e5e7e5ab8b370d6c329ec480221332ada57f0ab
with:
fetch-depth: 0
- uses: actions/setup-python@bd6b4b6205c4dbad673328db7b31b7fab9e241c0
with:
python-version: 3.9
- name: Install Python packages
run: |
python -m pip install --upgrade pip six pywin32 setuptools coverage
- name: Build Test
run: |
spack compiler find
spack external find cmake ninja win-sdk win-wdk wgl msmpi
spack -d install -y --cdash-upload-url https://cdash.spack.io/submit.php?project=Spack+on+Windows --cdash-track Nightly --only dependencies paraview
exit 0

View File

@@ -50,7 +50,7 @@ jobs:
- uses: actions/checkout@8e5e7e5ab8b370d6c329ec480221332ada57f0ab # @v2
with:
fetch-depth: 0
- uses: actions/setup-python@57ded4d7d5e986d7296eab16560982c6dd7c923b # @v2
- uses: actions/setup-python@bd6b4b6205c4dbad673328db7b31b7fab9e241c0 # @v2
with:
python-version: ${{ matrix.python-version }}
- name: Install System packages
@@ -87,7 +87,7 @@ jobs:
UNIT_TEST_COVERAGE: ${{ matrix.python-version == '3.11' }}
run: |
share/spack/qa/run-unit-tests
- uses: codecov/codecov-action@894ff025c7b54547a9a2a1e9f228beae737ad3c2
- uses: codecov/codecov-action@eaaf4bedf32dbdc6b720b63067d99c4d77d6047d
with:
flags: unittests,linux,${{ matrix.concretizer }}
# Test shell integration
@@ -97,7 +97,7 @@ jobs:
- uses: actions/checkout@8e5e7e5ab8b370d6c329ec480221332ada57f0ab # @v2
with:
fetch-depth: 0
- uses: actions/setup-python@57ded4d7d5e986d7296eab16560982c6dd7c923b # @v2
- uses: actions/setup-python@bd6b4b6205c4dbad673328db7b31b7fab9e241c0 # @v2
with:
python-version: '3.11'
- name: Install System packages
@@ -118,7 +118,7 @@ jobs:
COVERAGE: true
run: |
share/spack/qa/run-shell-tests
- uses: codecov/codecov-action@894ff025c7b54547a9a2a1e9f228beae737ad3c2
- uses: codecov/codecov-action@eaaf4bedf32dbdc6b720b63067d99c4d77d6047d
with:
flags: shelltests,linux
@@ -155,7 +155,7 @@ jobs:
- uses: actions/checkout@8e5e7e5ab8b370d6c329ec480221332ada57f0ab # @v2
with:
fetch-depth: 0
- uses: actions/setup-python@57ded4d7d5e986d7296eab16560982c6dd7c923b # @v2
- uses: actions/setup-python@bd6b4b6205c4dbad673328db7b31b7fab9e241c0 # @v2
with:
python-version: '3.11'
- name: Install System packages
@@ -176,7 +176,7 @@ jobs:
SPACK_TEST_SOLVER: clingo
run: |
share/spack/qa/run-unit-tests
- uses: codecov/codecov-action@894ff025c7b54547a9a2a1e9f228beae737ad3c2 # @v2.1.0
- uses: codecov/codecov-action@eaaf4bedf32dbdc6b720b63067d99c4d77d6047d # @v2.1.0
with:
flags: unittests,linux,clingo
# Run unit tests on MacOS
@@ -189,7 +189,7 @@ jobs:
- uses: actions/checkout@8e5e7e5ab8b370d6c329ec480221332ada57f0ab # @v2
with:
fetch-depth: 0
- uses: actions/setup-python@57ded4d7d5e986d7296eab16560982c6dd7c923b # @v2
- uses: actions/setup-python@bd6b4b6205c4dbad673328db7b31b7fab9e241c0 # @v2
with:
python-version: ${{ matrix.python-version }}
- name: Install Python packages
@@ -211,6 +211,6 @@ jobs:
$(which spack) solve zlib
common_args=(--dist loadfile --tx '4*popen//python=./bin/spack-tmpconfig python -u ./bin/spack python' -x)
$(which spack) unit-test --cov --cov-config=pyproject.toml --cov-report=xml:coverage.xml "${common_args[@]}"
- uses: codecov/codecov-action@894ff025c7b54547a9a2a1e9f228beae737ad3c2
- uses: codecov/codecov-action@eaaf4bedf32dbdc6b720b63067d99c4d77d6047d
with:
flags: unittests,macos

View File

@@ -19,7 +19,7 @@ jobs:
runs-on: ubuntu-latest
steps:
- uses: actions/checkout@8e5e7e5ab8b370d6c329ec480221332ada57f0ab # @v2
- uses: actions/setup-python@57ded4d7d5e986d7296eab16560982c6dd7c923b # @v2
- uses: actions/setup-python@bd6b4b6205c4dbad673328db7b31b7fab9e241c0 # @v2
with:
python-version: '3.11'
cache: 'pip'
@@ -38,7 +38,7 @@ jobs:
- uses: actions/checkout@8e5e7e5ab8b370d6c329ec480221332ada57f0ab # @v2
with:
fetch-depth: 0
- uses: actions/setup-python@57ded4d7d5e986d7296eab16560982c6dd7c923b # @v2
- uses: actions/setup-python@bd6b4b6205c4dbad673328db7b31b7fab9e241c0 # @v2
with:
python-version: '3.11'
cache: 'pip'

View File

@@ -18,7 +18,7 @@ jobs:
- uses: actions/checkout@8e5e7e5ab8b370d6c329ec480221332ada57f0ab
with:
fetch-depth: 0
- uses: actions/setup-python@57ded4d7d5e986d7296eab16560982c6dd7c923b
- uses: actions/setup-python@bd6b4b6205c4dbad673328db7b31b7fab9e241c0
with:
python-version: 3.9
- name: Install Python packages
@@ -33,7 +33,7 @@ jobs:
./share/spack/qa/validate_last_exit.ps1
coverage combine -a
coverage xml
- uses: codecov/codecov-action@894ff025c7b54547a9a2a1e9f228beae737ad3c2
- uses: codecov/codecov-action@eaaf4bedf32dbdc6b720b63067d99c4d77d6047d
with:
flags: unittests,windows
unit-tests-cmd:
@@ -42,7 +42,7 @@ jobs:
- uses: actions/checkout@8e5e7e5ab8b370d6c329ec480221332ada57f0ab
with:
fetch-depth: 0
- uses: actions/setup-python@57ded4d7d5e986d7296eab16560982c6dd7c923b
- uses: actions/setup-python@bd6b4b6205c4dbad673328db7b31b7fab9e241c0
with:
python-version: 3.9
- name: Install Python packages
@@ -57,7 +57,7 @@ jobs:
./share/spack/qa/validate_last_exit.ps1
coverage combine -a
coverage xml
- uses: codecov/codecov-action@894ff025c7b54547a9a2a1e9f228beae737ad3c2
- uses: codecov/codecov-action@eaaf4bedf32dbdc6b720b63067d99c4d77d6047d
with:
flags: unittests,windows
build-abseil:
@@ -66,7 +66,7 @@ jobs:
- uses: actions/checkout@8e5e7e5ab8b370d6c329ec480221332ada57f0ab
with:
fetch-depth: 0
- uses: actions/setup-python@57ded4d7d5e986d7296eab16560982c6dd7c923b
- uses: actions/setup-python@bd6b4b6205c4dbad673328db7b31b7fab9e241c0
with:
python-version: 3.9
- name: Install Python packages

View File

@@ -1,3 +1,221 @@
# v0.20.0 (2023-05-21)
`v0.20.0` is a major feature release.
## Features in this release
1. **`requires()` directive and enhanced package requirements**
We've added some more enhancements to requirements in Spack (#36286).
There is a new `requires()` directive for packages. `requires()` is the opposite of
`conflicts()`. You can use it to impose constraints on this package when certain
conditions are met:
```python
requires(
"%apple-clang",
when="platform=darwin",
msg="This package builds only with clang on macOS"
)
```
More on this in [the docs](
https://spack.rtfd.io/en/latest/packaging_guide.html#conflicts-and-requirements).
You can also now add a `when:` clause to `requires:` in your `packages.yaml`
configuration or in an environment:
```yaml
packages:
openmpi:
require:
- any_of: ["%gcc"]
when: "@:4.1.4"
message: "Only OpenMPI 4.1.5 and up can build with fancy compilers"
```
More details can be found [here](
https://spack.readthedocs.io/en/latest/build_settings.html#package-requirements)
2. **Exact versions**
Spack did not previously have a way to distinguish a version if it was a prefix of
some other version. For example, `@3.2` would match `3.2`, `3.2.1`, `3.2.2`, etc. You
can now match *exactly* `3.2` with `@=3.2`. This is useful, for example, if you need
to patch *only* the `3.2` version of a package. The new syntax is described in [the docs](
https://spack.readthedocs.io/en/latest/basic_usage.html#version-specifier).
Generally, when writing packages, you should prefer to use ranges like `@3.2` over
the specific versions, as this allows the concretizer more leeway when selecting
versions of dependencies. More details and recommendations are in the [packaging guide](
https://spack.readthedocs.io/en/latest/packaging_guide.html#ranges-versus-specific-versions).
See #36273 for full details on the version refactor.
3. **New testing interface**
Writing package tests is now much simpler with a new [test interface](
https://spack.readthedocs.io/en/latest/packaging_guide.html#stand-alone-tests).
Writing a test is now as easy as adding a method that starts with `test_`:
```python
class MyPackage(Package):
...
def test_always_fails(self):
"""use assert to always fail"""
assert False
def test_example(self):
"""run installed example"""
example = which(self.prefix.bin.example)
example()
```
You can use Python's native `assert` statement to implement your checks -- no more
need to fiddle with `run_test` or other test framework methods. Spack will
introspect the class and run `test_*` methods when you run `spack test`,
4. **More stable concretization**
* Now, `spack concretize` will *only* concretize the new portions of the environment
and will not change existing parts of an environment unless you specify `--force`.
This has always been true for `unify:false`, but not for `unify:true` and
`unify:when_possible` environments. Now it is true for all of them (#37438, #37681).
* The concretizer has a new `--reuse-deps` argument that *only* reuses dependencies.
That is, it will always treat the *roots* of your environment as it would with
`--fresh`. This allows you to upgrade just the roots of your environment while
keeping everything else stable (#30990).
5. **Weekly develop snapshot releases**
Since last year, we have maintained a buildcache of `develop` at
https://binaries.spack.io/develop, but the cache can grow to contain so many builds
as to be unwieldy. When we get a stable `develop` build, we snapshot the release and
add a corresponding tag the Spack repository. So, you can use a stack from a specific
day. There are now tags in the spack repository like:
* `develop-2023-05-14`
* `develop-2023-05-18`
that correspond to build caches like:
* https://binaries.spack.io/develop-2023-05-14/e4s
* https://binaries.spack.io/develop-2023-05-18/e4s
We plan to store these snapshot releases weekly.
6. **Specs in buildcaches can be referenced by hash.**
* Previously, you could run `spack buildcache list` and see the hashes in
buildcaches, but referring to them by hash would fail.
* You can now run commands like `spack spec` and `spack install` and refer to
buildcache hashes directly, e.g. `spack install /abc123` (#35042)
7. **New package and buildcache index websites**
Our public websites for searching packages have been completely revamped and updated.
You can check them out here:
* *Package Index*: https://packages.spack.io
* *Buildcache Index*: https://cache.spack.io
Both are searchable and more interactive than before. Currently major releases are
shown; UI for browsing `develop` snapshots is coming soon.
8. **Default CMake and Meson build types are now Release**
Spack has historically defaulted to building with optimization and debugging, but
packages like `llvm` can be enormous with debug turned on. Our default build type for
all Spack packages is now `Release` (#36679, #37436). This has a number of benefits:
* much smaller binaries;
* higher default optimization level; and
* defining `NDEBUG` disables assertions, which may lead to further speedups.
You can still get the old behavior back through requirements and package preferences.
## Other new commands and directives
* `spack checksum` can automatically add new versions to package (#24532)
* new command: `spack pkg grep` to easily search package files (#34388)
* New `maintainers` directive (#35083)
* Add `spack buildcache push` (alias to `buildcache create`) (#34861)
* Allow using `-j` to control the parallelism of concretization (#37608)
* Add `--exclude` option to 'spack external find' (#35013)
## Other new features of note
* editing: add higher-precedence `SPACK_EDITOR` environment variable
* Many YAML formatting improvements from updating `ruamel.yaml` to the latest version
supporting Python 3.6. (#31091, #24885, #37008).
* Requirements and preferences should not define (non-git) versions (#37687, #37747)
* Environments now store spack version/commit in `spack.lock` (#32801)
* User can specify the name of the `packages` subdirectory in repositories (#36643)
* Add container images supporting RHEL alternatives (#36713)
* make version(...) kwargs explicit (#36998)
## Notable refactors
* buildcache create: reproducible tarballs (#35623)
* Bootstrap most of Spack dependencies using environments (#34029)
* Split `satisfies(..., strict=True/False)` into two functions (#35681)
* spack install: simplify behavior when inside environments (#35206)
## Binary cache and stack updates
* Major simplification of CI boilerplate in stacks (#34272, #36045)
* Many improvements to our CI pipeline's reliability
## Removals, Deprecations, and disablements
* Module file generation is disabled by default; you'll need to enable it to use it (#37258)
* Support for Python 2 was deprecated in `v0.19.0` and has been removed. `v0.20.0` only
supports Python 3.6 and higher.
* Deprecated target names are no longer recognized by Spack. Use generic names instead:
* `graviton` is now `cortex_a72`
* `graviton2` is now `neoverse_n1`
* `graviton3` is now `neoverse_v1`
* `blacklist` and `whitelist` in module configuration were deprecated in `v0.19.0` and are
removed in this release. Use `exclude` and `include` instead.
* The `ignore=` parameter of the `extends()` directive has been removed. It was not used by
any builtin packages and is no longer needed to avoid conflicts in environment views (#35588).
* Support for the old YAML buildcache format has been removed. It was deprecated in `v0.19.0` (#34347).
* `spack find --bootstrap` has been removed. It was deprecated in `v0.19.0`. Use `spack
--bootstrap find` instead (#33964).
* `spack bootstrap trust` and `spack bootstrap untrust` are now removed, having been
deprecated in `v0.19.0`. Use `spack bootstrap enable` and `spack bootstrap disable`.
* The `--mirror-name`, `--mirror-url`, and `--directory` options to buildcache and
mirror commands were deprecated in `v0.19.0` and have now been removed. They have been
replaced by positional arguments (#37457).
* Deprecate `env:` as top level environment key (#37424)
* deprecate buildcache create --rel, buildcache install --allow-root (#37285)
* Support for very old perl-like spec format strings (e.g., `$_$@$%@+$+$=`) has been
removed (#37425). This was deprecated in in `v0.15` (#10556).
## Notable Bugfixes
* bugfix: don't fetch package metadata for unknown concrete specs (#36990)
* Improve package source code context display on error (#37655)
* Relax environment manifest filename requirements and lockfile identification criteria (#37413)
* `installer.py`: drop build edges of installed packages by default (#36707)
* Bugfix: package requirements with git commits (#35057, #36347)
* Package requirements: allow single specs in requirement lists (#36258)
* conditional variant values: allow boolean (#33939)
* spack uninstall: follow run/link edges on --dependents (#34058)
## Spack community stats
* 7,179 total packages, 499 new since `v0.19.0`
* 329 new Python packages
* 31 new R packages
* 336 people contributed to this release
* 317 committers to packages
* 62 committers to core
# v0.19.1 (2023-02-07)
### Spack Bugfixes

View File

@@ -143,6 +143,26 @@ The OS that are currently supported are summarized in the table below:
* - Amazon Linux 2
- ``amazonlinux:2``
- ``spack/amazon-linux``
* - AlmaLinux 8
- ``almalinux:8``
- ``spack/almalinux8``
* - AlmaLinux 9
- ``almalinux:9``
- ``spack/almalinux9``
* - Rocky Linux 8
- ``rockylinux:8``
- ``spack/rockylinux8``
* - Rocky Linux 9
- ``rockylinux:9``
- ``spack/rockylinux9``
* - Fedora Linux 37
- ``fedora:37``
- ``spack/fedora37``
* - Fedora Linux 38
- ``fedora:38``
- ``spack/fedora38``
All the images are tagged with the corresponding release of Spack:

View File

@@ -317,7 +317,7 @@ installed, but you know that new compilers have been added to your
.. code-block:: console
$ module load gcc-4.9.0
$ module load gcc/4.9.0
$ spack compiler find
==> Added 1 new compiler to ~/.spack/linux/compilers.yaml
gcc@4.9.0

View File

@@ -35,27 +35,27 @@ showing lots of installed packages:
$ module avail
--------------------------------------------------------------- ~/spack/share/spack/modules/linux-ubuntu14-x86_64 ---------------------------------------------------------------
autoconf-2.69-gcc-4.8-qextxkq hwloc-1.11.6-gcc-6.3.0-akcisez m4-1.4.18-gcc-4.8-ev2znoc openblas-0.2.19-gcc-6.3.0-dhkmed6 py-setuptools-34.2.0-gcc-6.3.0-fadur4s
automake-1.15-gcc-4.8-maqvukj isl-0.18-gcc-4.8-afi6taq m4-1.4.18-gcc-6.3.0-uppywnz openmpi-2.1.0-gcc-6.3.0-go2s4z5 py-six-1.10.0-gcc-6.3.0-p4dhkaw
binutils-2.28-gcc-4.8-5s7c6rs libiconv-1.15-gcc-4.8-at46wg3 mawk-1.3.4-gcc-4.8-acjez57 openssl-1.0.2k-gcc-4.8-dkls5tk python-2.7.13-gcc-6.3.0-tyehea7
bison-3.0.4-gcc-4.8-ek4luo5 libpciaccess-0.13.4-gcc-6.3.0-gmufnvh mawk-1.3.4-gcc-6.3.0-ostdoms openssl-1.0.2k-gcc-6.3.0-gxgr5or readline-7.0-gcc-4.8-xhufqhn
bzip2-1.0.6-gcc-4.8-iffrxzn libsigsegv-2.11-gcc-4.8-pp2cvte mpc-1.0.3-gcc-4.8-g5mztc5 pcre-8.40-gcc-4.8-r5pbrxb readline-7.0-gcc-6.3.0-zzcyicg
bzip2-1.0.6-gcc-6.3.0-bequudr libsigsegv-2.11-gcc-6.3.0-7enifnh mpfr-3.1.5-gcc-4.8-o7xm7az perl-5.24.1-gcc-4.8-dg5j65u sqlite-3.8.5-gcc-6.3.0-6zoruzj
cmake-3.7.2-gcc-6.3.0-fowuuby libtool-2.4.6-gcc-4.8-7a523za mpich-3.2-gcc-6.3.0-dmvd3aw perl-5.24.1-gcc-6.3.0-6uzkpt6 tar-1.29-gcc-4.8-wse2ass
curl-7.53.1-gcc-4.8-3fz46n6 libtool-2.4.6-gcc-6.3.0-n7zmbzt ncurses-6.0-gcc-4.8-dcpe7ia pkg-config-0.29.2-gcc-4.8-ib33t75 tcl-8.6.6-gcc-4.8-tfxzqbr
expat-2.2.0-gcc-4.8-mrv6bd4 libxml2-2.9.4-gcc-4.8-ryzxnsu ncurses-6.0-gcc-6.3.0-ucbhcdy pkg-config-0.29.2-gcc-6.3.0-jpgubk3 util-macros-1.19.1-gcc-6.3.0-xorz2x2
flex-2.6.3-gcc-4.8-yf345oo libxml2-2.9.4-gcc-6.3.0-rltzsdh netlib-lapack-3.6.1-gcc-6.3.0-js33dog py-appdirs-1.4.0-gcc-6.3.0-jxawmw7 xz-5.2.3-gcc-4.8-mew4log
gcc-6.3.0-gcc-4.8-24puqve lmod-7.4.1-gcc-4.8-je4srhr netlib-scalapack-2.0.2-gcc-6.3.0-5aidk4l py-numpy-1.12.0-gcc-6.3.0-oemmoeu xz-5.2.3-gcc-6.3.0-3vqeuvb
gettext-0.19.8.1-gcc-4.8-yymghlh lua-5.3.4-gcc-4.8-im75yaz netlib-scalapack-2.0.2-gcc-6.3.0-hjsemcn py-packaging-16.8-gcc-6.3.0-i2n3dtl zip-3.0-gcc-4.8-rwar22d
gmp-6.1.2-gcc-4.8-5ub2wu5 lua-luafilesystem-1_6_3-gcc-4.8-wkey3nl netlib-scalapack-2.0.2-gcc-6.3.0-jva724b py-pyparsing-2.1.10-gcc-6.3.0-tbo6gmw zlib-1.2.11-gcc-4.8-pgxsxv7
help2man-1.47.4-gcc-4.8-kcnqmau lua-luaposix-33.4.0-gcc-4.8-mdod2ry netlib-scalapack-2.0.2-gcc-6.3.0-rgqfr6d py-scipy-0.19.0-gcc-6.3.0-kr7nat4 zlib-1.2.11-gcc-6.3.0-7cqp6cj
autoconf/2.69-gcc-4.8-qextxkq hwloc/1.11.6-gcc-6.3.0-akcisez m4/1.4.18-gcc-4.8-ev2znoc openblas/0.2.19-gcc-6.3.0-dhkmed6 py-setuptools/34.2.0-gcc-6.3.0-fadur4s
automake/1.15-gcc-4.8-maqvukj isl/0.18-gcc-4.8-afi6taq m4/1.4.18-gcc-6.3.0-uppywnz openmpi/2.1.0-gcc-6.3.0-go2s4z5 py-six/1.10.0-gcc-6.3.0-p4dhkaw
binutils/2.28-gcc-4.8-5s7c6rs libiconv/1.15-gcc-4.8-at46wg3 mawk/1.3.4-gcc-4.8-acjez57 openssl/1.0.2k-gcc-4.8-dkls5tk python/2.7.13-gcc-6.3.0-tyehea7
bison/3.0.4-gcc-4.8-ek4luo5 libpciaccess/0.13.4-gcc-6.3.0-gmufnvh mawk/1.3.4-gcc-6.3.0-ostdoms openssl/1.0.2k-gcc-6.3.0-gxgr5or readline/7.0-gcc-4.8-xhufqhn
bzip2/1.0.6-gcc-4.8-iffrxzn libsigsegv/2.11-gcc-4.8-pp2cvte mpc/1.0.3-gcc-4.8-g5mztc5 pcre/8.40-gcc-4.8-r5pbrxb readline/7.0-gcc-6.3.0-zzcyicg
bzip2/1.0.6-gcc-6.3.0-bequudr libsigsegv/2.11-gcc-6.3.0-7enifnh mpfr/3.1.5-gcc-4.8-o7xm7az perl/5.24.1-gcc-4.8-dg5j65u sqlite/3.8.5-gcc-6.3.0-6zoruzj
cmake/3.7.2-gcc-6.3.0-fowuuby libtool/2.4.6-gcc-4.8-7a523za mpich/3.2-gcc-6.3.0-dmvd3aw perl/5.24.1-gcc-6.3.0-6uzkpt6 tar/1.29-gcc-4.8-wse2ass
curl/7.53.1-gcc-4.8-3fz46n6 libtool/2.4.6-gcc-6.3.0-n7zmbzt ncurses/6.0-gcc-4.8-dcpe7ia pkg-config/0.29.2-gcc-4.8-ib33t75 tcl/8.6.6-gcc-4.8-tfxzqbr
expat/2.2.0-gcc-4.8-mrv6bd4 libxml2/2.9.4-gcc-4.8-ryzxnsu ncurses/6.0-gcc-6.3.0-ucbhcdy pkg-config/0.29.2-gcc-6.3.0-jpgubk3 util-macros/1.19.1-gcc-6.3.0-xorz2x2
flex/2.6.3-gcc-4.8-yf345oo libxml2/2.9.4-gcc-6.3.0-rltzsdh netlib-lapack/3.6.1-gcc-6.3.0-js33dog py-appdirs/1.4.0-gcc-6.3.0-jxawmw7 xz/5.2.3-gcc-4.8-mew4log
gcc/6.3.0-gcc-4.8-24puqve lmod/7.4.1-gcc-4.8-je4srhr netlib-scalapack/2.0.2-gcc-6.3.0-5aidk4l py-numpy/1.12.0-gcc-6.3.0-oemmoeu xz/5.2.3-gcc-6.3.0-3vqeuvb
gettext/0.19.8.1-gcc-4.8-yymghlh lua/5.3.4-gcc-4.8-im75yaz netlib-scalapack/2.0.2-gcc-6.3.0-hjsemcn py-packaging/16.8-gcc-6.3.0-i2n3dtl zip/3.0-gcc-4.8-rwar22d
gmp/6.1.2-gcc-4.8-5ub2wu5 lua-luafilesystem/1_6_3-gcc-4.8-wkey3nl netlib-scalapack/2.0.2-gcc-6.3.0-jva724b py-pyparsing/2.1.10-gcc-6.3.0-tbo6gmw zlib/1.2.11-gcc-4.8-pgxsxv7
help2man/1.47.4-gcc-4.8-kcnqmau lua-luaposix/33.4.0-gcc-4.8-mdod2ry netlib-scalapack/2.0.2-gcc-6.3.0-rgqfr6d py-scipy/0.19.0-gcc-6.3.0-kr7nat4 zlib/1.2.11-gcc-6.3.0-7cqp6cj
The names should look familiar, as they resemble the output from ``spack find``.
For example, you could type the following command to load the ``cmake`` module:
.. code-block:: console
$ module load cmake-3.7.2-gcc-6.3.0-fowuuby
$ module load cmake/3.7.2-gcc-6.3.0-fowuuby
Neither of these is particularly pretty, easy to remember, or easy to
type. Luckily, Spack offers many facilities for customizing the module
@@ -779,35 +779,35 @@ cut-and-pasted into a shell script. For example:
$ spack module tcl loads --dependencies py-numpy git
# bzip2@1.0.6%gcc@4.9.3=linux-x86_64
module load bzip2-1.0.6-gcc-4.9.3-ktnrhkrmbbtlvnagfatrarzjojmkvzsx
module load bzip2/1.0.6-gcc-4.9.3-ktnrhkrmbbtlvnagfatrarzjojmkvzsx
# ncurses@6.0%gcc@4.9.3=linux-x86_64
module load ncurses-6.0-gcc-4.9.3-kaazyneh3bjkfnalunchyqtygoe2mncv
module load ncurses/6.0-gcc-4.9.3-kaazyneh3bjkfnalunchyqtygoe2mncv
# zlib@1.2.8%gcc@4.9.3=linux-x86_64
module load zlib-1.2.8-gcc-4.9.3-v3ufwaahjnviyvgjcelo36nywx2ufj7z
module load zlib/1.2.8-gcc-4.9.3-v3ufwaahjnviyvgjcelo36nywx2ufj7z
# sqlite@3.8.5%gcc@4.9.3=linux-x86_64
module load sqlite-3.8.5-gcc-4.9.3-a3eediswgd5f3rmto7g3szoew5nhehbr
module load sqlite/3.8.5-gcc-4.9.3-a3eediswgd5f3rmto7g3szoew5nhehbr
# readline@6.3%gcc@4.9.3=linux-x86_64
module load readline-6.3-gcc-4.9.3-se6r3lsycrwxyhreg4lqirp6xixxejh3
module load readline/6.3-gcc-4.9.3-se6r3lsycrwxyhreg4lqirp6xixxejh3
# python@3.5.1%gcc@4.9.3=linux-x86_64
module load python-3.5.1-gcc-4.9.3-5q5rsrtjld4u6jiicuvtnx52m7tfhegi
module load python/3.5.1-gcc-4.9.3-5q5rsrtjld4u6jiicuvtnx52m7tfhegi
# py-setuptools@20.5%gcc@4.9.3=linux-x86_64
module load py-setuptools-20.5-gcc-4.9.3-4qr2suj6p6glepnedmwhl4f62x64wxw2
module load py-setuptools/20.5-gcc-4.9.3-4qr2suj6p6glepnedmwhl4f62x64wxw2
# py-nose@1.3.7%gcc@4.9.3=linux-x86_64
module load py-nose-1.3.7-gcc-4.9.3-pwhtjw2dvdvfzjwuuztkzr7b4l6zepli
module load py-nose/1.3.7-gcc-4.9.3-pwhtjw2dvdvfzjwuuztkzr7b4l6zepli
# openblas@0.2.17%gcc@4.9.3+shared=linux-x86_64
module load openblas-0.2.17-gcc-4.9.3-pw6rmlom7apfsnjtzfttyayzc7nx5e7y
module load openblas/0.2.17-gcc-4.9.3-pw6rmlom7apfsnjtzfttyayzc7nx5e7y
# py-numpy@1.11.0%gcc@4.9.3+blas+lapack=linux-x86_64
module load py-numpy-1.11.0-gcc-4.9.3-mulodttw5pcyjufva4htsktwty4qd52r
module load py-numpy/1.11.0-gcc-4.9.3-mulodttw5pcyjufva4htsktwty4qd52r
# curl@7.47.1%gcc@4.9.3=linux-x86_64
module load curl-7.47.1-gcc-4.9.3-ohz3fwsepm3b462p5lnaquv7op7naqbi
module load curl/7.47.1-gcc-4.9.3-ohz3fwsepm3b462p5lnaquv7op7naqbi
# autoconf@2.69%gcc@4.9.3=linux-x86_64
module load autoconf-2.69-gcc-4.9.3-bkibjqhgqm5e3o423ogfv2y3o6h2uoq4
module load autoconf/2.69-gcc-4.9.3-bkibjqhgqm5e3o423ogfv2y3o6h2uoq4
# cmake@3.5.0%gcc@4.9.3~doc+ncurses+openssl~qt=linux-x86_64
module load cmake-3.5.0-gcc-4.9.3-x7xnsklmgwla3ubfgzppamtbqk5rwn7t
module load cmake/3.5.0-gcc-4.9.3-x7xnsklmgwla3ubfgzppamtbqk5rwn7t
# expat@2.1.0%gcc@4.9.3=linux-x86_64
module load expat-2.1.0-gcc-4.9.3-6pkz2ucnk2e62imwakejjvbv6egncppd
module load expat/2.1.0-gcc-4.9.3-6pkz2ucnk2e62imwakejjvbv6egncppd
# git@2.8.0-rc2%gcc@4.9.3+curl+expat=linux-x86_64
module load git-2.8.0-rc2-gcc-4.9.3-3bib4hqtnv5xjjoq5ugt3inblt4xrgkd
module load git/2.8.0-rc2-gcc-4.9.3-3bib4hqtnv5xjjoq5ugt3inblt4xrgkd
The script may be further edited by removing unnecessary modules.
@@ -826,12 +826,12 @@ For example, consider the following on one system:
.. code-block:: console
$ module avail
linux-SuSE11-x86_64/antlr-2.7.7-gcc-5.3.0-bdpl46y
linux-SuSE11-x86_64/antlr/2.7.7-gcc-5.3.0-bdpl46y
$ spack module tcl loads antlr # WRONG!
# antlr@2.7.7%gcc@5.3.0~csharp+cxx~java~python arch=linux-SuSE11-x86_64
module load antlr-2.7.7-gcc-5.3.0-bdpl46y
module load antlr/2.7.7-gcc-5.3.0-bdpl46y
$ spack module tcl loads --prefix linux-SuSE11-x86_64/ antlr
# antlr@2.7.7%gcc@5.3.0~csharp+cxx~java~python arch=linux-SuSE11-x86_64
module load linux-SuSE11-x86_64/antlr-2.7.7-gcc-5.3.0-bdpl46y
module load linux-SuSE11-x86_64/antlr/2.7.7-gcc-5.3.0-bdpl46y

View File

@@ -18,7 +18,7 @@
* Homepage: https://pypi.python.org/pypi/archspec
* Usage: Labeling, comparison and detection of microarchitectures
* Version: 0.2.1 (commit 4b1f21802a23b536bbcce73d3c631a566b20e8bd)
* Version: 0.2.1 (commit 9e1117bd8a2f0581bced161f2a2e8d6294d0300b)
astunparse
----------------

View File

@@ -2803,7 +2803,7 @@
"flags" : "-march=armv8.2-a+fp16+dotprod+crypto -mtune=cortex-a72"
},
{
"versions": "10.2",
"versions": "10.2:10.2.99",
"flags" : "-mcpu=zeus"
},
{

View File

@@ -4,7 +4,7 @@
# SPDX-License-Identifier: (Apache-2.0 OR MIT)
#: PEP440 canonical <major>.<minor>.<micro>.<devN> string
__version__ = "0.20.0.dev0"
__version__ = "0.21.0.dev0"
spack_version = __version__

View File

@@ -589,7 +589,6 @@ def set_module_variables_for_package(pkg):
# TODO: make these build deps that can be installed if not found.
m.make = MakeExecutable("make", jobs)
m.gmake = MakeExecutable("gmake", jobs)
m.ninja = MakeExecutable("ninja", jobs, supports_jobserver=False)
# TODO: johnwparent: add package or builder support to define these build tools
# for now there is no entrypoint for builders to define these on their
@@ -1374,7 +1373,7 @@ def long_message(self):
test_log = join_path(os.path.dirname(self.log_name), spack_install_test_log)
if os.path.isfile(test_log):
out.write("\nSee test log for details:\n")
out.write(" {0}n".format(test_log))
out.write(" {0}\n".format(test_log))
return out.getvalue()

View File

@@ -2,6 +2,7 @@
# Spack Project Developers. See the top-level COPYRIGHT file for details.
#
# SPDX-License-Identifier: (Apache-2.0 OR MIT)
import collections.abc
import os
from typing import Tuple
@@ -13,21 +14,24 @@
from .cmake import CMakeBuilder, CMakePackage
def cmake_cache_path(name, value, comment=""):
def cmake_cache_path(name, value, comment="", force=False):
"""Generate a string for a cmake cache variable"""
return 'set({0} "{1}" CACHE PATH "{2}")\n'.format(name, value, comment)
force_str = " FORCE" if force else ""
return 'set({0} "{1}" CACHE PATH "{2}"{3})\n'.format(name, value, comment, force_str)
def cmake_cache_string(name, value, comment=""):
def cmake_cache_string(name, value, comment="", force=False):
"""Generate a string for a cmake cache variable"""
return 'set({0} "{1}" CACHE STRING "{2}")\n'.format(name, value, comment)
force_str = " FORCE" if force else ""
return 'set({0} "{1}" CACHE STRING "{2}"{3})\n'.format(name, value, comment, force_str)
def cmake_cache_option(name, boolean_value, comment=""):
def cmake_cache_option(name, boolean_value, comment="", force=False):
"""Generate a string for a cmake configuration option"""
value = "ON" if boolean_value else "OFF"
return 'set({0} {1} CACHE BOOL "{2}")\n'.format(name, value, comment)
force_str = " FORCE" if force else ""
return 'set({0} {1} CACHE BOOL "{2}"{3})\n'.format(name, value, comment, force_str)
class CachedCMakeBuilder(CMakeBuilder):
@@ -63,6 +67,34 @@ def cache_name(self):
def cache_path(self):
return os.path.join(self.pkg.stage.source_path, self.cache_name)
# Implement a version of the define_from_variant for Cached packages
def define_cmake_cache_from_variant(self, cmake_var, variant=None, comment=""):
"""Return a Cached CMake field from the given variant's value.
See define_from_variant in lib/spack/spack/build_systems/cmake.py package
"""
if variant is None:
variant = cmake_var.lower()
if variant not in self.pkg.variants:
raise KeyError('"{0}" is not a variant of "{1}"'.format(variant, self.pkg.name))
if variant not in self.pkg.spec.variants:
return ""
value = self.pkg.spec.variants[variant].value
field = None
if isinstance(value, bool):
field = cmake_cache_option(cmake_var, value, comment)
else:
if isinstance(value, collections.abc.Sequence) and not isinstance(value, str):
value = ";".join(str(v) for v in value)
else:
value = str(value)
field = cmake_cache_string(cmake_var, value, comment)
return field
def initconfig_compiler_entries(self):
# This will tell cmake to use the Spack compiler wrappers when run
# through Spack, but use the underlying compiler when run outside of
@@ -130,6 +162,17 @@ def initconfig_compiler_entries(self):
libs_string = libs_format_string.format(lang)
entries.append(cmake_cache_string(libs_string, libs_flags))
# Set the generator in the cached config
if self.spec.satisfies("generator=make"):
entries.append(cmake_cache_string("CMAKE_GENERATOR", "Unix Makefiles"))
if self.spec.satisfies("generator=ninja"):
entries.append(cmake_cache_string("CMAKE_GENERATOR", "Ninja"))
entries.append(
cmake_cache_string(
"CMAKE_MAKE_PROGRAM", "{0}/ninja".format(spec["ninja"].prefix.bin)
)
)
return entries
def initconfig_mpi_entries(self):
@@ -195,26 +238,57 @@ def initconfig_hardware_entries(self):
"#------------------{0}\n".format("-" * 60),
]
# Provide standard CMake arguments for dependent CachedCMakePackages
if spec.satisfies("^cuda"):
entries.append("#------------------{0}".format("-" * 30))
entries.append("# Cuda")
entries.append("#------------------{0}\n".format("-" * 30))
cudatoolkitdir = spec["cuda"].prefix
entries.append(cmake_cache_path("CUDA_TOOLKIT_ROOT_DIR", cudatoolkitdir))
cudacompiler = "${CUDA_TOOLKIT_ROOT_DIR}/bin/nvcc"
entries.append(cmake_cache_path("CMAKE_CUDA_COMPILER", cudacompiler))
entries.append(cmake_cache_path("CUDAToolkit_ROOT", cudatoolkitdir))
entries.append(cmake_cache_path("CMAKE_CUDA_COMPILER", "${CUDAToolkit_ROOT}/bin/nvcc"))
entries.append(cmake_cache_path("CMAKE_CUDA_HOST_COMPILER", "${CMAKE_CXX_COMPILER}"))
# Include the deprecated CUDA_TOOLKIT_ROOT_DIR for supporting BLT packages
entries.append(cmake_cache_path("CUDA_TOOLKIT_ROOT_DIR", cudatoolkitdir))
archs = spec.variants["cuda_arch"].value
if archs != "none":
arch_str = ";".join(archs)
entries.append(
cmake_cache_string("CMAKE_CUDA_ARCHITECTURES", "{0}".format(arch_str))
)
if "+rocm" in spec:
entries.append("#------------------{0}".format("-" * 30))
entries.append("# ROCm")
entries.append("#------------------{0}\n".format("-" * 30))
# Explicitly setting HIP_ROOT_DIR may be a patch that is no longer necessary
entries.append(cmake_cache_path("HIP_ROOT_DIR", "{0}".format(spec["hip"].prefix)))
entries.append(
cmake_cache_path("HIP_CXX_COMPILER", "{0}".format(self.spec["hip"].hipcc))
)
archs = self.spec.variants["amdgpu_target"].value
if archs != "none":
arch_str = ";".join(archs)
entries.append(
cmake_cache_string("CMAKE_HIP_ARCHITECTURES", "{0}".format(arch_str))
)
entries.append(cmake_cache_string("AMDGPU_TARGETS", "{0}".format(arch_str)))
entries.append(cmake_cache_string("GPU_TARGETS", "{0}".format(arch_str)))
return entries
def std_initconfig_entries(self):
cmake_prefix_path_env = os.environ["CMAKE_PREFIX_PATH"]
cmake_prefix_path = cmake_prefix_path_env.replace(os.pathsep, ";")
return [
"#------------------{0}".format("-" * 60),
"# !!!! This is a generated file, edit at own risk !!!!",
"#------------------{0}".format("-" * 60),
"# CMake executable path: {0}".format(self.pkg.spec["cmake"].command.path),
"#------------------{0}\n".format("-" * 60),
cmake_cache_path("CMAKE_PREFIX_PATH", cmake_prefix_path),
]
def initconfig_package_entries(self):

View File

@@ -7,7 +7,7 @@
import llnl.util.lang as lang
from spack.directives import extends, maintainers
from spack.directives import extends
from .generic import GenericBuilder, Package
@@ -71,8 +71,6 @@ class RPackage(Package):
GenericBuilder = RBuilder
maintainers("glennpj")
#: This attribute is used in UI queries that need to know the build
#: system base class
build_system_class = "RPackage"

View File

@@ -10,6 +10,7 @@
from llnl.util.filesystem import find, join_path, working_dir
import spack.builder
import spack.install_test
import spack.package_base
from spack.directives import build_system, depends_on, extends
from spack.multimethod import when
@@ -30,8 +31,8 @@ class SIPPackage(spack.package_base.PackageBase):
#: Name of private sip module to install alongside package
sip_module = "sip"
#: Callback names for install-time test
install_time_test_callbacks = ["test"]
#: Callback names for install-time testing
install_time_test_callbacks = ["test_imports"]
#: Legacy buildsystem attribute used to deserialize and install old specs
legacy_buildsystem = "sip"
@@ -87,18 +88,20 @@ def python(self, *args, **kwargs):
"""The python ``Executable``."""
inspect.getmodule(self).python(*args, **kwargs)
def test(self):
def test_imports(self):
"""Attempts to import modules of the installed package."""
# Make sure we are importing the installed modules,
# not the ones in the source directory
python = inspect.getmodule(self).python
for module in self.import_modules:
self.run_test(
inspect.getmodule(self).python.path,
["-c", "import {0}".format(module)],
with spack.install_test.test_part(
self,
"test_imports_{0}".format(module),
purpose="checking import of {0}".format(module),
work_dir="spack-test",
)
):
python("-c", "import {0}".format(module))
@spack.builder.builder("sip")

View File

@@ -756,6 +756,7 @@ def generate_gitlab_ci_yaml(
# Get the joined "ci" config with all of the current scopes resolved
ci_config = cfg.get("ci")
config_deprecated = False
if not ci_config:
tty.warn("Environment does not have `ci` a configuration")
gitlabci_config = yaml_root.get("gitlab-ci")
@@ -768,6 +769,7 @@ def generate_gitlab_ci_yaml(
)
translate_deprecated_config(gitlabci_config)
ci_config = gitlabci_config
config_deprecated = True
# Default target is gitlab...and only target is gitlab
if not ci_config.get("target", "gitlab") == "gitlab":
@@ -831,6 +833,14 @@ def generate_gitlab_ci_yaml(
# Values: "spack_pull_request", "spack_protected_branch", or not set
spack_pipeline_type = os.environ.get("SPACK_PIPELINE_TYPE", None)
copy_only_pipeline = spack_pipeline_type == "spack_copy_only"
if copy_only_pipeline and config_deprecated:
tty.warn(
"SPACK_PIPELINE_TYPE=spack_copy_only is not supported when using\n",
"deprecated ci configuration, a no-op pipeline will be generated\n",
"instead.",
)
if "mirrors" not in yaml_root or len(yaml_root["mirrors"].values()) < 1:
tty.die("spack ci generate requires an env containing a mirror")
@@ -1085,7 +1095,7 @@ def generate_gitlab_ci_yaml(
raise AttributeError
def main_script_replacements(cmd):
return cmd.replace("{env_dir}", concrete_env_dir)
return cmd.replace("{env_dir}", rel_concrete_env_dir)
job_object["script"] = _unpack_script(
job_object["script"], op=main_script_replacements
@@ -1207,7 +1217,7 @@ def main_script_replacements(cmd):
).format(c_spec, release_spec)
tty.debug(debug_msg)
if prune_dag and not rebuild_spec and spack_pipeline_type != "spack_copy_only":
if prune_dag and not rebuild_spec and not copy_only_pipeline:
tty.debug(
"Pruning {0}/{1}, does not need rebuild.".format(
release_spec.name, release_spec.dag_hash()
@@ -1298,7 +1308,7 @@ def main_script_replacements(cmd):
max_length_needs = length_needs
max_needs_job = job_name
if spack_pipeline_type != "spack_copy_only":
if not copy_only_pipeline:
output_object[job_name] = job_object
job_id += 1
@@ -1330,7 +1340,7 @@ def main_script_replacements(cmd):
"when": ["runner_system_failure", "stuck_or_timeout_failure", "script_failure"],
}
if spack_pipeline_type == "spack_copy_only":
if copy_only_pipeline and not config_deprecated:
stage_names.append("copy")
sync_job = copy.deepcopy(spack_ci_ir["jobs"]["copy"]["attributes"])
sync_job["stage"] = "copy"
@@ -1474,12 +1484,18 @@ def main_script_replacements(cmd):
sorted_output = cinw.needs_to_dependencies(sorted_output)
else:
# No jobs were generated
tty.debug("No specs to rebuild, generating no-op job")
noop_job = spack_ci_ir["jobs"]["noop"]["attributes"]
noop_job["retry"] = service_job_retries
sorted_output = {"no-specs-to-rebuild": noop_job}
if copy_only_pipeline and config_deprecated:
tty.debug("Generating no-op job as copy-only is unsupported here.")
noop_job["script"] = [
'echo "copy-only pipelines are not supported with deprecated ci configs"'
]
sorted_output = {"unsupported-copy": noop_job}
else:
tty.debug("No specs to rebuild, generating no-op job")
sorted_output = {"no-specs-to-rebuild": noop_job}
if known_broken_specs_encountered:
tty.error("This pipeline generated hashes known to be broken on develop:")

View File

@@ -347,7 +347,7 @@ def iter_groups(specs, indent, all_headers):
spack.spec.architecture_color,
architecture if architecture else "no arch",
spack.spec.compiler_color,
f"{compiler.name}@{compiler.version}" if compiler else "no compiler",
f"{compiler.display_str}" if compiler else "no compiler",
)
# Sometimes we want to display specs that are not yet concretized.

View File

@@ -98,7 +98,7 @@ def compiler_find(args):
config = spack.config.config
filename = config.get_config_filename(args.scope, "compilers")
tty.msg("Added %d new compiler%s to %s" % (n, s, filename))
colify(reversed(sorted(c.spec for c in new_compilers)), indent=4)
colify(reversed(sorted(c.spec.display_str for c in new_compilers)), indent=4)
else:
tty.msg("Found no new compilers")
tty.msg("Compilers are defined in the following files:")
@@ -112,13 +112,13 @@ def compiler_remove(args):
tty.die("No compilers match spec %s" % cspec)
elif not args.all and len(compilers) > 1:
tty.error("Multiple compilers match spec %s. Choose one:" % cspec)
colify(reversed(sorted([c.spec for c in compilers])), indent=4)
colify(reversed(sorted([c.spec.display_str for c in compilers])), indent=4)
tty.msg("Or, use `spack compiler remove -a` to remove all of them.")
sys.exit(1)
for compiler in compilers:
spack.compilers.remove_compiler_from_config(compiler.spec, scope=args.scope)
tty.msg("Removed compiler %s" % compiler.spec)
tty.msg("Removed compiler %s" % compiler.spec.display_str)
def compiler_info(args):
@@ -130,7 +130,7 @@ def compiler_info(args):
tty.die("No compilers match spec %s" % cspec)
else:
for c in compilers:
print(str(c.spec) + ":")
print(c.spec.display_str + ":")
print("\tpaths:")
for cpath in ["cc", "cxx", "f77", "fc"]:
print("\t\t%s = %s" % (cpath, getattr(c, cpath, None)))
@@ -188,7 +188,7 @@ def compiler_list(args):
os_str += "-%s" % target
cname = "%s{%s} %s" % (spack.spec.compiler_color, name, os_str)
tty.hline(colorize(cname), char="-")
colify(reversed(sorted(c.spec for c in compilers)))
colify(reversed(sorted(c.spec.display_str for c in compilers)))
def compiler(parser, args):

View File

@@ -302,7 +302,7 @@ def env_create(args):
# the environment should not include a view.
with_view = None
_env_create(
env = _env_create(
args.create_env,
init_file=args.envfile,
dir=args.dir,
@@ -310,6 +310,9 @@ def env_create(args):
keep_relative=args.keep_relative,
)
# Generate views, only really useful for environments created from spack.lock files.
env.regenerate_views()
def _env_create(name_or_path, *, init_file=None, dir=False, with_view=None, keep_relative=False):
"""Create a new environment, with an optional yaml description.

View File

@@ -79,6 +79,12 @@ def setup_parser(subparser):
read_cray_manifest.add_argument(
"--directory", default=None, help="specify a directory storing a group of manifest files"
)
read_cray_manifest.add_argument(
"--ignore-default-dir",
action="store_true",
default=False,
help="ignore the default directory of manifest files",
)
read_cray_manifest.add_argument(
"--dry-run",
action="store_true",
@@ -177,11 +183,16 @@ def external_read_cray_manifest(args):
manifest_directory=args.directory,
dry_run=args.dry_run,
fail_on_error=args.fail_on_error,
ignore_default_dir=args.ignore_default_dir,
)
def _collect_and_consume_cray_manifest_files(
manifest_file=None, manifest_directory=None, dry_run=False, fail_on_error=False
manifest_file=None,
manifest_directory=None,
dry_run=False,
fail_on_error=False,
ignore_default_dir=False,
):
manifest_files = []
if manifest_file:
@@ -191,7 +202,7 @@ def _collect_and_consume_cray_manifest_files(
if manifest_directory:
manifest_dirs.append(manifest_directory)
if os.path.isdir(cray_manifest.default_path):
if not ignore_default_dir and os.path.isdir(cray_manifest.default_path):
tty.debug(
"Cray manifest path {0} exists: collecting all files to read.".format(
cray_manifest.default_path

View File

@@ -112,36 +112,26 @@ def _to_dict(compiler):
def get_compiler_config(scope=None, init_config=True):
"""Return the compiler configuration for the specified architecture."""
def init_compiler_config():
"""Compiler search used when Spack has no compilers."""
compilers = find_compilers()
compilers_dict = []
for compiler in compilers:
compilers_dict.append(_to_dict(compiler))
spack.config.set("compilers", compilers_dict, scope=scope)
config = spack.config.get("compilers", scope=scope) or []
if config or not init_config:
return config
merged_config = spack.config.get("compilers")
if merged_config:
return config
_init_compiler_config(scope=scope)
config = spack.config.get("compilers", scope=scope)
# Update the configuration if there are currently no compilers
# configured. Avoid updating automatically if there ARE site
# compilers configured but no user ones.
if not config and init_config:
if scope is None:
# We know no compilers were configured in any scope.
init_compiler_config()
config = spack.config.get("compilers", scope=scope)
elif scope == "user":
# Check the site config and update the user config if
# nothing is configured at the site level.
site_config = spack.config.get("compilers", scope="site")
sys_config = spack.config.get("compilers", scope="system")
if not site_config and not sys_config:
init_compiler_config()
config = spack.config.get("compilers", scope=scope)
return config
elif config:
return config
else:
return [] # Return empty list which we will later append to.
return config
def _init_compiler_config(*, scope):
"""Compiler search used when Spack has no compilers."""
compilers = find_compilers()
compilers_dict = []
for compiler in compilers:
compilers_dict.append(_to_dict(compiler))
spack.config.set("compilers", compilers_dict, scope=scope)
def compiler_config_files():

View File

@@ -151,7 +151,11 @@ def setup_custom_environment(self, pkg, env):
arch = arch.replace("-", "_")
# vcvars can target specific sdk versions, force it to pick up concretized sdk
# version, if needed by spec
sdk_ver = "" if "win-sdk" not in pkg.spec else pkg.spec["win-sdk"].version.string + ".0"
sdk_ver = (
""
if "win-sdk" not in pkg.spec or pkg.name == "win-sdk"
else pkg.spec["win-sdk"].version.string + ".0"
)
# provide vcvars with msvc version selected by concretization,
# not whatever it happens to pick up on the system (highest available version)
out = subprocess.check_output( # novermin

View File

@@ -48,7 +48,8 @@ def translated_compiler_name(manifest_compiler_name):
def compiler_from_entry(entry):
compiler_name = translated_compiler_name(entry["name"])
paths = entry["executables"]
version = entry["version"]
# to instantiate a compiler class we may need a concrete version:
version = "={}".format(entry["version"])
arch = entry["arch"]
operating_system = arch["os"]
target = arch["target"]

View File

@@ -1221,28 +1221,27 @@ def remove(self, query_spec, list_name=user_speclist_name, force=False):
old_specs = set(self.user_specs)
new_specs = set()
for spec in matches:
if spec in list_to_change:
try:
list_to_change.remove(spec)
self.update_stale_references(list_name)
new_specs = set(self.user_specs)
except spack.spec_list.SpecListError:
# define new specs list
new_specs = set(self.user_specs)
msg = f"Spec '{spec}' is part of a spec matrix and "
msg += f"cannot be removed from list '{list_to_change}'."
if force:
msg += " It will be removed from the concrete specs."
# Mock new specs, so we can remove this spec from concrete spec lists
new_specs.remove(spec)
tty.warn(msg)
if spec not in list_to_change:
continue
try:
list_to_change.remove(spec)
self.update_stale_references(list_name)
new_specs = set(self.user_specs)
except spack.spec_list.SpecListError:
# define new specs list
new_specs = set(self.user_specs)
msg = f"Spec '{spec}' is part of a spec matrix and "
msg += f"cannot be removed from list '{list_to_change}'."
if force:
msg += " It will be removed from the concrete specs."
# Mock new specs, so we can remove this spec from concrete spec lists
new_specs.remove(spec)
tty.warn(msg)
else:
if list_name == user_speclist_name:
self.manifest.remove_user_spec(str(spec))
else:
if list_name == user_speclist_name:
for user_spec in matches:
self.manifest.remove_user_spec(str(user_spec))
else:
for user_spec in matches:
self.manifest.remove_definition(str(user_spec), list_name=list_name)
self.manifest.remove_definition(str(spec), list_name=list_name)
# If force, update stale concretized specs
for spec in old_specs - new_specs:
@@ -1352,6 +1351,10 @@ def concretize(self, force=False, tests=False):
self.concretized_order = []
self.specs_by_hash = {}
# Remove concrete specs that no longer correlate to a user spec
for spec in set(self.concretized_user_specs) - set(self.user_specs):
self.deconcretize(spec)
# Pick the right concretization strategy
if self.unify == "when_possible":
return self._concretize_together_where_possible(tests=tests)
@@ -1365,6 +1368,16 @@ def concretize(self, force=False, tests=False):
msg = "concretization strategy not implemented [{0}]"
raise SpackEnvironmentError(msg.format(self.unify))
def deconcretize(self, spec):
# spec has to be a root of the environment
index = self.concretized_user_specs.index(spec)
dag_hash = self.concretized_order.pop(index)
del self.concretized_user_specs[index]
# If this was the only user spec that concretized to this concrete spec, remove it
if dag_hash not in self.concretized_order:
del self.specs_by_hash[dag_hash]
def _get_specs_to_concretize(
self,
) -> Tuple[Set[spack.spec.Spec], Set[spack.spec.Spec], List[spack.spec.Spec]]:

View File

@@ -215,6 +215,31 @@ def print_message(logger: LogType, msg: str, verbose: bool = False):
tty.info(msg, format="g")
def overall_status(current_status: "TestStatus", substatuses: List["TestStatus"]) -> "TestStatus":
"""Determine the overall status based on the current and associated sub status values.
Args:
current_status: current overall status, assumed to default to PASSED
substatuses: status of each test part or overall status of each test spec
Returns:
test status encompassing the main test and all subtests
"""
if current_status in [TestStatus.SKIPPED, TestStatus.NO_TESTS, TestStatus.FAILED]:
return current_status
skipped = 0
for status in substatuses:
if status == TestStatus.FAILED:
return status
elif status == TestStatus.SKIPPED:
skipped += 1
if skipped and skipped == len(substatuses):
return TestStatus.SKIPPED
return current_status
class PackageTest:
"""The class that manages stand-alone (post-install) package tests."""
@@ -308,14 +333,12 @@ def status(self, name: str, status: "TestStatus", msg: Optional[str] = None):
# to start with the same name) may not have PASSED. This extra
# check is used to ensure the containing test part is not claiming
# to have passed when at least one subpart failed.
if status == TestStatus.PASSED:
for pname, substatus in self.test_parts.items():
if pname != part_name and pname.startswith(part_name):
if substatus == TestStatus.FAILED:
print(f"{substatus}: {part_name}{extra}")
self.test_parts[part_name] = substatus
self.counts[substatus] += 1
return
substatuses = []
for pname, substatus in self.test_parts.items():
if pname != part_name and pname.startswith(part_name):
substatuses.append(substatus)
if substatuses:
status = overall_status(status, substatuses)
print(f"{status}: {part_name}{extra}")
self.test_parts[part_name] = status
@@ -420,6 +443,26 @@ def summarize(self):
lines.append(f"{totals:=^80}")
return lines
def write_tested_status(self):
"""Write the overall status to the tested file.
If there any test part failures, then the tests failed. If all test
parts are skipped, then the tests were skipped. If any tests passed
then the tests passed; otherwise, there were not tests executed.
"""
status = TestStatus.NO_TESTS
if self.counts[TestStatus.FAILED] > 0:
status = TestStatus.FAILED
else:
skipped = self.counts[TestStatus.SKIPPED]
if skipped and self.parts() == skipped:
status = TestStatus.SKIPPED
elif self.counts[TestStatus.PASSED] > 0:
status = TestStatus.PASSED
with open(self.tested_file, "w") as f:
f.write(f"{status.value}\n")
@contextlib.contextmanager
def test_part(pkg: Pb, test_name: str, purpose: str, work_dir: str = ".", verbose: bool = False):
@@ -654,8 +697,9 @@ def process_test_parts(pkg: Pb, test_specs: List[spack.spec.Spec], verbose: bool
try:
tests = test_functions(spec.package_class)
except spack.repo.UnknownPackageError:
# some virtuals don't have a package
tests = []
# Some virtuals don't have a package so we don't want to report
# them as not having tests when that isn't appropriate.
continue
if len(tests) == 0:
tester.status(spec.name, TestStatus.NO_TESTS)
@@ -682,7 +726,7 @@ def process_test_parts(pkg: Pb, test_specs: List[spack.spec.Spec], verbose: bool
finally:
if tester.ran_tests():
fs.touch(tester.tested_file)
tester.write_tested_status()
# log one more test message to provide a completion timestamp
# for CDash reporting
@@ -889,20 +933,15 @@ def __call__(self, *args, **kwargs):
if remove_directory:
shutil.rmtree(test_dir)
tested = os.path.exists(self.tested_file_for_spec(spec))
if tested:
status = TestStatus.PASSED
else:
self.ensure_stage()
if spec.external and not externals:
status = TestStatus.SKIPPED
elif not spec.installed:
status = TestStatus.SKIPPED
else:
status = TestStatus.NO_TESTS
status = self.test_status(spec, externals)
self.counts[status] += 1
self.write_test_result(spec, status)
except SkipTest:
status = TestStatus.SKIPPED
self.counts[status] += 1
self.write_test_result(spec, TestStatus.SKIPPED)
except BaseException as exc:
status = TestStatus.FAILED
self.counts[status] += 1
@@ -939,6 +978,31 @@ def __call__(self, *args, **kwargs):
if failures:
raise TestSuiteFailure(failures)
def test_status(self, spec: spack.spec.Spec, externals: bool) -> Optional[TestStatus]:
"""Determine the overall test results status for the spec.
Args:
spec: instance of the spec under test
externals: ``True`` if externals are to be tested, else ``False``
Returns:
the spec's test status if available or ``None``
"""
tests_status_file = self.tested_file_for_spec(spec)
if not os.path.exists(tests_status_file):
self.ensure_stage()
if spec.external and not externals:
status = TestStatus.SKIPPED
elif not spec.installed:
status = TestStatus.SKIPPED
else:
status = TestStatus.NO_TESTS
return status
with open(tests_status_file, "r") as f:
value = (f.read()).strip("\n")
return TestStatus(int(value)) if value else TestStatus.NO_TESTS
def ensure_stage(self):
"""Ensure the test suite stage directory exists."""
if not os.path.exists(self.stage):

View File

@@ -170,17 +170,10 @@ def merge_config_rules(configuration, spec):
Returns:
dict: actions to be taken on the spec passed as an argument
"""
# Get the top-level configuration for the module type we are using
module_specific_configuration = copy.deepcopy(configuration)
# Construct a dictionary with the actions we need to perform on the spec
# passed as a parameter
# The keyword 'all' is always evaluated first, all the others are
# evaluated in order of appearance in the module file
spec_configuration = module_specific_configuration.pop("all", {})
for constraint, action in module_specific_configuration.items():
spec_configuration = copy.deepcopy(configuration.get("all", {}))
for constraint, action in configuration.items():
if spec.satisfies(constraint):
if hasattr(constraint, "override") and constraint.override:
spec_configuration = {}
@@ -200,14 +193,14 @@ def merge_config_rules(configuration, spec):
# configuration
# Hash length in module files
hash_length = module_specific_configuration.get("hash_length", 7)
hash_length = configuration.get("hash_length", 7)
spec_configuration["hash_length"] = hash_length
verbose = module_specific_configuration.get("verbose", False)
verbose = configuration.get("verbose", False)
spec_configuration["verbose"] = verbose
# module defaults per-package
defaults = module_specific_configuration.get("defaults", [])
defaults = configuration.get("defaults", [])
spec_configuration["defaults"] = defaults
return spec_configuration
@@ -400,7 +393,7 @@ class BaseConfiguration(object):
querying easier. It needs to be sub-classed for specific module types.
"""
default_projections = {"all": "{name}-{version}-{compiler.name}-{compiler.version}"}
default_projections = {"all": "{name}/{version}-{compiler.name}-{compiler.version}"}
def __init__(self, spec, module_set_name, explicit=None):
# Module where type(self) is defined

View File

@@ -7,7 +7,7 @@
import itertools
import os.path
import posixpath
from typing import Any, Dict
from typing import Any, Dict, List
import llnl.util.lang as lang
@@ -56,7 +56,7 @@ def make_context(spec, module_set_name, explicit):
return LmodContext(conf)
def guess_core_compilers(name, store=False):
def guess_core_compilers(name, store=False) -> List[spack.spec.CompilerSpec]:
"""Guesses the list of core compilers installed in the system.
Args:
@@ -64,21 +64,19 @@ def guess_core_compilers(name, store=False):
modules.yaml configuration file
Returns:
List of core compilers, if found, or None
List of found core compilers
"""
core_compilers = []
for compiler_config in spack.compilers.all_compilers_config():
for compiler in spack.compilers.all_compilers():
try:
compiler = compiler_config["compiler"]
# A compiler is considered to be a core compiler if any of the
# C, C++ or Fortran compilers reside in a system directory
is_system_compiler = any(
os.path.dirname(x) in spack.util.environment.SYSTEM_DIRS
for x in compiler["paths"].values()
if x is not None
os.path.dirname(getattr(compiler, x, "")) in spack.util.environment.SYSTEM_DIRS
for x in ("cc", "cxx", "f77", "fc")
)
if is_system_compiler:
core_compilers.append(str(compiler["spec"]))
core_compilers.append(compiler.spec)
except (KeyError, TypeError, AttributeError):
continue
@@ -89,10 +87,10 @@ def guess_core_compilers(name, store=False):
modules_cfg = spack.config.get(
"modules:" + name, {}, scope=spack.config.default_modify_scope()
)
modules_cfg.setdefault("lmod", {})["core_compilers"] = core_compilers
modules_cfg.setdefault("lmod", {})["core_compilers"] = [str(x) for x in core_compilers]
spack.config.set("modules:" + name, modules_cfg, scope=spack.config.default_modify_scope())
return core_compilers or None
return core_compilers
class LmodConfiguration(BaseConfiguration):
@@ -104,7 +102,7 @@ class LmodConfiguration(BaseConfiguration):
default_projections = {"all": posixpath.join("{name}", "{version}")}
@property
def core_compilers(self):
def core_compilers(self) -> List[spack.spec.CompilerSpec]:
"""Returns the list of "Core" compilers
Raises:
@@ -112,14 +110,18 @@ def core_compilers(self):
specified in the configuration file or the sequence
is empty
"""
value = configuration(self.name).get("core_compilers") or guess_core_compilers(
self.name, store=True
)
compilers = [
spack.spec.CompilerSpec(c) for c in configuration(self.name).get("core_compilers", [])
]
if not value:
if not compilers:
compilers = guess_core_compilers(self.name, store=True)
if not compilers:
msg = 'the key "core_compilers" must be set in modules.yaml'
raise CoreCompilersNotFoundError(msg)
return value
return compilers
@property
def core_specs(self):
@@ -132,6 +134,7 @@ def filter_hierarchy_specs(self):
return configuration(self.name).get("filter_hierarchy_specs", {})
@property
@lang.memoized
def hierarchy_tokens(self):
"""Returns the list of tokens that are part of the modulefile
hierarchy. 'compiler' is always present.
@@ -156,6 +159,7 @@ def hierarchy_tokens(self):
return tokens
@property
@lang.memoized
def requires(self):
"""Returns a dictionary mapping all the requirements of this spec
to the actual provider. 'compiler' is always present among the
@@ -222,6 +226,7 @@ def available(self):
return available
@property
@lang.memoized
def missing(self):
"""Returns the list of tokens that are not available."""
return [x for x in self.hierarchy_tokens if x not in self.available]
@@ -283,16 +288,18 @@ def token_to_path(self, name, value):
# If we are dealing with a core compiler, return 'Core'
core_compilers = self.conf.core_compilers
if name == "compiler" and str(value) in core_compilers:
if name == "compiler" and any(
spack.spec.CompilerSpec(value).satisfies(c) for c in core_compilers
):
return "Core"
# CompilerSpec does not have an hash, as we are not allowed to
# CompilerSpec does not have a hash, as we are not allowed to
# use different flavors of the same compiler
if name == "compiler":
return path_part_fmt.format(token=value)
# In case the hierarchy token refers to a virtual provider
# we need to append an hash to the version to distinguish
# we need to append a hash to the version to distinguish
# among flavors of the same library (e.g. openblas~openmp vs.
# openblas+openmp)
path = path_part_fmt.format(token=value)
@@ -313,6 +320,7 @@ def available_path_parts(self):
return parts
@property
@lang.memoized
def unlocked_paths(self):
"""Returns a dictionary mapping conditions to a list of unlocked
paths.
@@ -424,6 +432,7 @@ def missing(self):
return self.conf.missing
@tengine.context_property
@lang.memoized
def unlocked_paths(self):
"""Returns the list of paths that are unlocked unconditionally."""
layout = make_layout(self.spec, self.conf.name, self.conf.explicit)

View File

@@ -108,6 +108,5 @@
# These are just here for editor support; they will be replaced when the build env
# is set up.
make = MakeExecutable("make", jobs=1)
gmake = MakeExecutable("gmake", jobs=1)
ninja = MakeExecutable("ninja", jobs=1)
configure = Executable(join_path(".", "configure"))

View File

@@ -37,7 +37,9 @@
def slingshot_network():
return os.path.exists("/opt/cray/pe") and os.path.exists("/lib64/libcxi.so")
return os.path.exists("/opt/cray/pe") and (
os.path.exists("/lib64/libcxi.so") or os.path.exists("/usr/lib64/libcxi.so")
)
def _target_name_from_craype_target_name(name):

View File

@@ -6,7 +6,6 @@
import itertools
import os
import re
import shutil
from collections import OrderedDict
import macholib.mach_o
@@ -356,13 +355,7 @@ def _set_elf_rpaths(target, rpaths):
# Join the paths using ':' as a separator
rpaths_str = ":".join(rpaths)
# If we're relocating patchelf itself, make a copy and use it
bak_path = None
if target.endswith("/bin/patchelf"):
bak_path = target + ".bak"
shutil.copy(target, bak_path)
patchelf, output = executable.Executable(bak_path or _patchelf()), None
patchelf, output = executable.Executable(_patchelf()), None
try:
# TODO: revisit the use of --force-rpath as it might be conditional
# TODO: if we want to support setting RUNPATH from binary packages
@@ -371,9 +364,6 @@ def _set_elf_rpaths(target, rpaths):
except executable.ProcessError as e:
msg = "patchelf --force-rpath --set-rpath {0} failed with error {1}"
tty.warn(msg.format(target, e))
finally:
if bak_path and os.path.exists(bak_path):
os.remove(bak_path)
return output

View File

@@ -1239,7 +1239,7 @@ def get_pkg_class(self, pkg_name):
try:
module = importlib.import_module(fullname)
except ImportError:
raise UnknownPackageError(pkg_name)
raise UnknownPackageError(fullname)
except Exception as e:
msg = f"cannot load package '{pkg_name}' from the '{self.namespace}' repository: {e}"
raise RepoError(msg) from e

View File

@@ -614,6 +614,23 @@ def multiple_values_error(self, attribute, pkg):
def no_value_error(self, attribute, pkg):
return f'Cannot select a single "{attribute}" for package "{pkg}"'
def _get_cause_tree(self, cause, conditions, condition_causes, literals, indent=" "):
parents = [c for e, c in condition_causes if e == cause]
local = "required because %s " % conditions[cause]
return [indent + local] + [
c
for parent in parents
for c in self._get_cause_tree(
parent, conditions, condition_causes, literals, indent=indent + " "
)
]
def get_cause_tree(self, cause):
conditions = dict(extract_args(self.model, "condition"))
condition_causes = list(extract_args(self.model, "condition_cause"))
return self._get_cause_tree(cause, conditions, condition_causes, [])
def handle_error(self, msg, *args):
"""Handle an error state derived by the solver."""
if msg == "multiple_values_error":
@@ -622,14 +639,28 @@ def handle_error(self, msg, *args):
if msg == "no_value_error":
return self.no_value_error(*args)
try:
idx = args.index("startcauses")
except ValueError:
msg_args = args
cause_args = []
else:
msg_args = args[:idx]
cause_args = args[idx + 1 :]
msg = msg.format(*msg_args)
# For variant formatting, we sometimes have to construct specs
# to format values properly. Find/replace all occurances of
# Spec(...) with the string representation of the spec mentioned
msg = msg.format(*args)
specs_to_construct = re.findall(r"Spec\(([^)]*)\)", msg)
for spec_str in specs_to_construct:
msg = msg.replace("Spec(%s)" % spec_str, str(spack.spec.Spec(spec_str)))
for cause in set(cause_args):
for c in self.get_cause_tree(cause):
msg += f"\n{c}"
return msg
def message(self, errors) -> str:
@@ -775,6 +806,8 @@ def visit(node):
self.control.load(os.path.join(parent_dir, "concretize.lp"))
self.control.load(os.path.join(parent_dir, "os_compatibility.lp"))
self.control.load(os.path.join(parent_dir, "display.lp"))
if spack.error.debug:
self.control.load(os.path.join(parent_dir, "causation.lp"))
timer.stop("load")
# Grounding is the first step in the solve -- it turns our facts
@@ -835,7 +868,13 @@ def on_model(model):
# print any unknown functions in the model
for sym in best_model:
if sym.name not in ("attr", "error", "opt_criterion"):
if sym.name not in (
"attr",
"error",
"opt_criterion",
"condition",
"condition_cause",
):
tty.debug(
"UNKNOWN SYMBOL: %s(%s)" % (sym.name, ", ".join(stringify(sym.arguments)))
)
@@ -861,9 +900,9 @@ class SpackSolverSetup(object):
def __init__(self, tests=False):
self.gen = None # set by setup()
self.declared_versions = {}
self.possible_versions = {}
self.deprecated_versions = {}
self.declared_versions = collections.defaultdict(list)
self.possible_versions = collections.defaultdict(set)
self.deprecated_versions = collections.defaultdict(set)
self.possible_virtuals = None
self.possible_compilers = []
@@ -1266,7 +1305,11 @@ def package_provider_rules(self, pkg):
for when in whens:
msg = "%s provides %s when %s" % (pkg.name, provided, when)
condition_id = self.condition(when, provided, pkg.name, msg)
self.gen.fact(fn.provider_condition(condition_id, when.name, provided.name))
self.gen.fact(
fn.imposed_constraint(
condition_id, "virtual_condition_holds", pkg.name, provided.name
)
)
self.gen.newline()
def package_dependencies_rules(self, pkg):
@@ -1287,16 +1330,25 @@ def package_dependencies_rules(self, pkg):
if not deptypes:
continue
msg = "%s depends on %s" % (pkg.name, dep.spec.name)
msg = "%s depends on %s" % (pkg.name, dep.spec)
if cond != spack.spec.Spec():
msg += " when %s" % cond
condition_id = self.condition(cond, dep.spec, pkg.name, msg)
self.gen.fact(fn.dependency_condition(condition_id, pkg.name, dep.spec.name))
self.gen.fact(fn.condition_requirement(condition_id, "spack_installed", pkg.name))
for t in sorted(deptypes):
# there is a declared dependency of type t
self.gen.fact(fn.dependency_type(condition_id, t))
self.gen.fact(
fn.imposed_constraint(
condition_id, "dependency_holds", pkg.name, dep.spec.name, t
)
)
self.gen.fact(
fn.imposed_constraint(
condition_id, "virtual_node" if dep.spec.virtual else "node", dep.spec.name
)
)
self.gen.newline()
@@ -1450,7 +1502,11 @@ def external_packages(self):
for local_idx, spec in enumerate(external_specs):
msg = "%s available as external when satisfying %s" % (spec.name, spec)
condition_id = self.condition(spec, msg=msg)
self.gen.fact(fn.possible_external(condition_id, pkg_name, local_idx))
self.gen.fact(
fn.imposed_constraint(
condition_id, "external_conditions_hold", pkg_name, local_idx
)
)
self.possible_versions[spec.name].add(spec.version)
self.gen.newline()
@@ -1722,10 +1778,6 @@ class Body(object):
def build_version_dict(self, possible_pkgs):
"""Declare any versions in specs not declared in packages."""
self.declared_versions = collections.defaultdict(list)
self.possible_versions = collections.defaultdict(set)
self.deprecated_versions = collections.defaultdict(set)
packages_yaml = spack.config.get("packages")
packages_yaml = _normalize_packages_yaml(packages_yaml)
for pkg_name in possible_pkgs:
@@ -1766,12 +1818,7 @@ def key_fn(item):
if isinstance(v, vn.GitVersion):
version_defs.append(v)
else:
satisfying_versions = list(x for x in pkg_class.versions if x.satisfies(v))
if not satisfying_versions:
raise spack.config.ConfigError(
"Preference for version {0} does not match any version "
" defined in {1}".format(str(v), pkg_name)
)
satisfying_versions = self._check_for_defined_matching_versions(pkg_class, v)
# Amongst all defined versions satisfying this specific
# preference, the highest-numbered version is the
# most-preferred: therefore sort satisfying versions
@@ -1784,6 +1831,28 @@ def key_fn(item):
)
self.possible_versions[pkg_name].add(vdef)
def _check_for_defined_matching_versions(self, pkg_class, v):
"""Given a version specification (which may be a concrete version,
range, etc.), determine if any package.py version declarations
or externals define a version which satisfies it.
This is primarily for determining whether a version request (e.g.
version preferences, which should not themselves define versions)
refers to a defined version.
This function raises an exception if no satisfying versions are
found.
"""
pkg_name = pkg_class.name
satisfying_versions = list(x for x in pkg_class.versions if x.satisfies(v))
satisfying_versions.extend(x for x in self.possible_versions[pkg_name] if x.satisfies(v))
if not satisfying_versions:
raise spack.config.ConfigError(
"Preference for version {0} does not match any version"
" defined for {1} (in its package.py or any external)".format(str(v), pkg_name)
)
return satisfying_versions
def add_concrete_versions_from_specs(self, specs, origin):
"""Add concrete versions to possible versions from lists of CLI/dev specs."""
for s in spack.traverse.traverse_nodes(specs):
@@ -2215,14 +2284,6 @@ def setup(self, driver, specs, reuse=None):
# get possible compilers
self.possible_compilers = self.generate_possible_compilers(specs)
# traverse all specs and packages to build dict of possible versions
self.build_version_dict(possible)
self.add_concrete_versions_from_specs(specs, Provenance.SPEC)
self.add_concrete_versions_from_specs(dev_specs, Provenance.DEV_SPEC)
req_version_specs = _get_versioned_specs_from_pkg_requirements()
self.add_concrete_versions_from_specs(req_version_specs, Provenance.PACKAGE_REQUIREMENT)
self.gen.h1("Concrete input spec definitions")
self.define_concrete_input_specs(specs, possible)
@@ -2250,6 +2311,14 @@ def setup(self, driver, specs, reuse=None):
self.provider_requirements()
self.external_packages()
# traverse all specs and packages to build dict of possible versions
self.build_version_dict(possible)
self.add_concrete_versions_from_specs(specs, Provenance.SPEC)
self.add_concrete_versions_from_specs(dev_specs, Provenance.DEV_SPEC)
req_version_specs = self._get_versioned_specs_from_pkg_requirements()
self.add_concrete_versions_from_specs(req_version_specs, Provenance.PACKAGE_REQUIREMENT)
self.gen.h1("Package Constraints")
for pkg in sorted(self.pkgs):
self.gen.h2("Package rules: %s" % pkg)
@@ -2281,98 +2350,106 @@ def setup(self, driver, specs, reuse=None):
self.define_target_constraints()
def literal_specs(self, specs):
for idx, spec in enumerate(specs):
for spec in specs:
self.gen.h2("Spec: %s" % str(spec))
self.gen.fact(fn.literal(idx))
self.gen.fact(fn.literal(idx, "virtual_root" if spec.virtual else "root", spec.name))
# cannot use self.condition because it requires condition requirements
condition_id = next(self._condition_id_counter)
self.gen.fact(fn.condition(condition_id, "%s is provided as input spec" % spec))
self.gen.fact(fn.literal(condition_id))
self.gen.fact(fn.condition_requirement(condition_id, "literal_solved", condition_id))
self.gen.fact(
fn.imposed_constraint(
condition_id, "virtual_root" if spec.virtual else "root", spec.name
)
)
for clause in self.spec_clauses(spec):
self.gen.fact(fn.literal(idx, *clause.args))
self.gen.fact(fn.imposed_constraint(condition_id, *clause.args))
if clause.args[0] == "variant_set":
self.gen.fact(
fn.literal(idx, "variant_default_value_from_cli", *clause.args[1:])
fn.imposed_constraint(
condition_id, "variant_default_value_from_cli", *clause.args[1:]
)
)
if self.concretize_everything:
self.gen.fact(fn.concretize_everything())
def _get_versioned_specs_from_pkg_requirements(self):
"""If package requirements mention versions that are not mentioned
elsewhere, then we need to collect those to mark them as possible
versions.
"""
req_version_specs = list()
config = spack.config.get("packages")
for pkg_name, d in config.items():
if pkg_name == "all":
continue
if "require" in d:
req_version_specs.extend(self._specs_from_requires(pkg_name, d["require"]))
return req_version_specs
def _get_versioned_specs_from_pkg_requirements():
"""If package requirements mention versions that are not mentioned
elsewhere, then we need to collect those to mark them as possible
versions.
"""
req_version_specs = list()
config = spack.config.get("packages")
for pkg_name, d in config.items():
if pkg_name == "all":
continue
if "require" in d:
req_version_specs.extend(_specs_from_requires(pkg_name, d["require"]))
return req_version_specs
def _specs_from_requires(pkg_name, section):
"""Collect specs from requirements which define versions (i.e. those that
have a concrete version). Requirements can define *new* versions if
they are included as part of an equivalence (hash=number) but not
otherwise.
"""
if isinstance(section, str):
spec = spack.spec.Spec(section)
if not spec.name:
spec.name = pkg_name
extracted_specs = [spec]
else:
spec_strs = []
for spec_group in section:
if isinstance(spec_group, str):
spec_strs.append(spec_group)
else:
# Otherwise it is an object. The object can contain a single
# "spec" constraint, or a list of them with "any_of" or
# "one_of" policy.
if "spec" in spec_group:
new_constraints = [spec_group["spec"]]
else:
key = "one_of" if "one_of" in spec_group else "any_of"
new_constraints = spec_group[key]
spec_strs.extend(new_constraints)
extracted_specs = []
for spec_str in spec_strs:
spec = spack.spec.Spec(spec_str)
def _specs_from_requires(self, pkg_name, section):
"""Collect specs from requirements which define versions (i.e. those that
have a concrete version). Requirements can define *new* versions if
they are included as part of an equivalence (hash=number) but not
otherwise.
"""
if isinstance(section, str):
spec = spack.spec.Spec(section)
if not spec.name:
spec.name = pkg_name
extracted_specs.append(spec)
extracted_specs = [spec]
else:
spec_strs = []
for spec_group in section:
if isinstance(spec_group, str):
spec_strs.append(spec_group)
else:
# Otherwise it is an object. The object can contain a single
# "spec" constraint, or a list of them with "any_of" or
# "one_of" policy.
if "spec" in spec_group:
new_constraints = [spec_group["spec"]]
else:
key = "one_of" if "one_of" in spec_group else "any_of"
new_constraints = spec_group[key]
spec_strs.extend(new_constraints)
version_specs = []
for spec in extracted_specs:
if spec.versions.concrete:
# Note: this includes git versions
version_specs.append(spec)
continue
extracted_specs = []
for spec_str in spec_strs:
spec = spack.spec.Spec(spec_str)
if not spec.name:
spec.name = pkg_name
extracted_specs.append(spec)
# Prefer spec's name if it exists, in case the spec is
# requiring a specific implementation inside of a virtual section
# e.g. packages:mpi:require:openmpi@4.0.1
pkg_class = spack.repo.path.get_pkg_class(spec.name or pkg_name)
satisfying_versions = list(v for v in pkg_class.versions if v.satisfies(spec.versions))
if not satisfying_versions:
raise spack.config.ConfigError(
"{0} assigns a version that is not defined in"
" the associated package.py".format(str(spec))
version_specs = []
for spec in extracted_specs:
if spec.versions.concrete:
# Note: this includes git versions
version_specs.append(spec)
continue
# Prefer spec's name if it exists, in case the spec is
# requiring a specific implementation inside of a virtual section
# e.g. packages:mpi:require:openmpi@4.0.1
pkg_class = spack.repo.path.get_pkg_class(spec.name or pkg_name)
satisfying_versions = self._check_for_defined_matching_versions(
pkg_class, spec.versions
)
# Version ranges ("@1.3" without the "=", "@1.2:1.4") and lists
# will end up here
ordered_satisfying_versions = sorted(satisfying_versions, reverse=True)
vspecs = list(spack.spec.Spec("@{0}".format(x)) for x in ordered_satisfying_versions)
version_specs.extend(vspecs)
# Version ranges ("@1.3" without the "=", "@1.2:1.4") and lists
# will end up here
ordered_satisfying_versions = sorted(satisfying_versions, reverse=True)
vspecs = list(spack.spec.Spec("@{0}".format(x)) for x in ordered_satisfying_versions)
version_specs.extend(vspecs)
for spec in version_specs:
spec.attach_git_version_lookup()
return version_specs
for spec in version_specs:
spec.attach_git_version_lookup()
return version_specs
class SpecBuilder(object):
@@ -2389,6 +2466,8 @@ class SpecBuilder(object):
r"^root$",
r"^virtual_node$",
r"^virtual_root$",
r"^.*holds?$",
r"^literal.*$",
]
)
)
@@ -2828,12 +2907,13 @@ class InternalConcretizerError(spack.error.UnsatisfiableSpecError):
"""
def __init__(self, provided, conflicts):
indented = [" %s\n" % conflict for conflict in conflicts]
error_msg = "".join(indented)
msg = "Spack concretizer internal error. Please submit a bug report"
msg += "\n Please include the command, environment if applicable,"
msg += "\n and the following error message."
msg = "\n %s is unsatisfiable, errors are:\n%s" % (provided, error_msg)
msg = (
"Spack concretizer internal error. Please submit a bug report and include the "
"command, environment if applicable and the following error message."
f"\n {provided} is unsatisfiable, errors are:"
)
msg += "".join([f"\n {conflict}" for conflict in conflicts])
super(spack.error.UnsatisfiableSpecError, self).__init__(msg)

View File

@@ -0,0 +1,72 @@
% Copyright 2013-2022 Lawrence Livermore National Security, LLC and other
% Spack Project Developers. See the top-level COPYRIGHT file for details.
%
% SPDX-License-Identifier: (Apache-2.0 OR MIT)
% associated conditions by cause -> effect
condition_cause(Effect, Cause) :-
condition_holds(Effect), condition_holds(Cause),
attr(Name, A1),
condition_requirement(Effect, Name, A1),
imposed_constraint(Cause, Name, A1).
condition_cause(Effect, Cause) :-
condition_holds(Effect), condition_holds(Cause),
attr(Name, A1, A2),
condition_requirement(Effect, Name, A1, A2),
imposed_constraint(Cause, Name, A1, A2).
condition_cause(Effect, Cause) :-
condition_holds(Effect), condition_holds(Cause),
attr(Name, A1, A2, A3),
condition_requirement(Effect, Name, A1, A2, A3),
imposed_constraint(Cause, Name, A1, A2, A3).
condition_cause(Effect, Cause) :-
condition_holds(Effect), condition_holds(Cause),
attr(Name, A1, A2, A3, A4),
condition_requirement(Effect, Name, A1, A2, A3, A4),
imposed_constraint(Cause, Name, A1, A2, A3, A4).
% At most one variant for single valued variants
error(0, "'{0}' required multiple values for single-valued variant '{1}'\n Requested 'Spec({1}={2})' and 'Spec({1}={3})'", Package, Variant, Value1, Value2, startcauses, Cause1, Cause2)
:- attr("node", Package),
variant(Package, Variant),
variant_single_value(Package, Variant),
build(Package),
attr("variant_value", Package, Variant, Value1),
imposed_constraint(Cause1, "variant_set", Package, Variant, Value1),
condition_holds(Cause1),
attr("variant_value", Package, Variant, Value2),
imposed_constraint(Cause2, "variant_set", Package, Variant, Value2),
condition_holds(Cause2),
Value1 < Value2. % see[1] in concretize.lp
% We cannot have a version that violates another version constraint
error(0, "Version '{0}' of {1} does not satisfy '@{2}'", Version, Package, Constraint, startcauses, VersionCause, ConstraintCause)
:- attr("node", Package),
attr("version", Package, Version),
imposed_constraint(VersionCause, "node_version_satisfies", Package, Version),
condition_holds(VersionCause),
attr("node_version_satisfies", Package, Constraint),
imposed_constraint(ConstraintCause, "node_version_satisfies", Package, Constraint),
condition_holds(ConstraintCause),
not version_satisfies(Package, Constraint, Version).
% A virtual package may or may not have a version, but never has more than one
% Error to catch how it happens
error(0, "Version '{0}' of {1} does not satisfy '@{2}'", Version, Virtual, Constraint, startcauses, VersionCause, ConstraintCause)
:- attr("virtual_node", Virtual),
attr("version", Virtual, Version),
imposed_constraint(VersionCause, "node_version_satisfies", Virtual, Version),
condition_holds(VersionCause),
attr("node_version_satisfies", Virtual, Constraint),
imposed_constraint(ConstraintCause, "node_version_satisfies", Virtual, Constraint),
condition_holds(ConstraintCause),
not version_satisfies(Virtual, Constraint, Version).
% More specific error message if the version cannot satisfy some constraint
% Otherwise covered by `no_version_error` and `versions_conflict_error`.
error(0, "Cannot satisfy '{0}@{1}'", Package, Constraint, startcauses, ConstraintCause)
:- attr("node_version_satisfies", Package, Constraint),
imposed_constraint(ConstraintCause, "node_version_satisfies", Package, Constraint),
condition_holds(ConstraintCause),
attr("version", Package, Version),
not version_satisfies(Package, Constraint, Version).

View File

@@ -12,8 +12,8 @@
%-----------------------------------------------------------------------------
% Give clingo the choice to solve an input spec or not
{ literal_solved(ID) } :- literal(ID).
literal_not_solved(ID) :- not literal_solved(ID), literal(ID).
{ attr("literal_solved", ID) } :- literal(ID).
literal_not_solved(ID) :- not attr("literal_solved", ID), literal(ID).
% If concretize_everything() is a fact, then we cannot have unsolved specs
:- literal_not_solved(ID), concretize_everything.
@@ -21,24 +21,14 @@ literal_not_solved(ID) :- not literal_solved(ID), literal(ID).
% Make a problem with "zero literals solved" unsat. This is to trigger
% looking for solutions to the ASP problem with "errors", which results
% in better reporting for users. See #30669 for details.
1 { literal_solved(ID) : literal(ID) }.
1 { attr("literal_solved", ID) : literal(ID) }.
opt_criterion(300, "number of input specs not concretized").
#minimize{ 0@300: #true }.
#minimize { 1@300,ID : literal_not_solved(ID) }.
% Map constraint on the literal ID to the correct PSID
attr(Name, A1) :- literal(LiteralID, Name, A1), literal_solved(LiteralID).
attr(Name, A1, A2) :- literal(LiteralID, Name, A1, A2), literal_solved(LiteralID).
attr(Name, A1, A2, A3) :- literal(LiteralID, Name, A1, A2, A3), literal_solved(LiteralID).
attr(Name, A1, A2, A3, A4) :- literal(LiteralID, Name, A1, A2, A3, A4), literal_solved(LiteralID).
#defined concretize_everything/0.
#defined literal/1.
#defined literal/3.
#defined literal/4.
#defined literal/5.
#defined literal/6.
% Attributes for node packages which must have a single value
attr_single_value("version").
@@ -58,6 +48,13 @@ error(100, multiple_values_error, Attribute, Package)
attr_single_value(Attribute),
2 { attr(Attribute, Package, Version) }.
%-----------------------------------------------------------------------------
% Define functions for error handling
%-----------------------------------------------------------------------------
#defined error/9.
#defined condition_cause/2.
%-----------------------------------------------------------------------------
% Version semantics
%-----------------------------------------------------------------------------
@@ -96,7 +93,18 @@ version_satisfies(Package, Constraint, HashVersion) :- version_satisfies(Package
{ attr("version", Package, Version) : version_declared(Package, Version) }
:- attr("node", Package).
% Error to ensure structure of the program is not violated
error(2, "No version from '{0}' satisfies '@{1}' and '@{2}'", Package, Version1, Version2)
:- attr("node", Package),
attr("version", Package, Version1),
attr("version", Package, Version2),
Version1 < Version2. % see[1]
error(2, "No versions available for package '{0}'", Package)
:- attr("node", Package), not attr("version", Package, _).
% A virtual package may or may not have a version, but never has more than one
% fallback error for structure in case there's another way for it to happen
error(100, "Cannot select a single version for virtual '{0}'", Virtual)
:- attr("virtual_node", Virtual),
2 { attr("version", Virtual, Version) }.
@@ -150,8 +158,7 @@ possible_version_weight(Package, Weight)
:- attr("node_version_satisfies", Package, Constraint),
version_satisfies(Package, Constraint, _).
% More specific error message if the version cannot satisfy some constraint
% Otherwise covered by `no_version_error` and `versions_conflict_error`.
% Error for structure of program
error(10, "Cannot satisfy '{0}@{1}'", Package, Constraint)
:- attr("node_version_satisfies", Package, Constraint),
attr("version", Package, Version),
@@ -182,9 +189,8 @@ condition_holds(ID) :-
attr(Name, A1, A2, A3) : condition_requirement(ID, Name, A1, A2, A3);
attr(Name, A1, A2, A3, A4) : condition_requirement(ID, Name, A1, A2, A3, A4).
% condition_holds(ID) implies all imposed_constraints, unless do_not_impose(ID)
% is derived. This allows imposed constraints to be canceled in special cases.
impose(ID) :- condition_holds(ID), not do_not_impose(ID).
% condition_holds(ID) implies all imposed_constraints.
impose(ID) :- condition_holds(ID).
% conditions that hold impose constraints on other specs
attr(Name, A1) :- impose(ID), imposed_constraint(ID, Name, A1).
@@ -229,33 +235,19 @@ depends_on(Package, Dependency) :- attr("depends_on", Package, Dependency, _).
% a dependency holds if its condition holds and if it is not external or
% concrete. We chop off dependencies for externals, and dependencies of
% concrete specs don't need to be resolved -- they arise from the concrete
% specs themselves.
dependency_holds(Package, Dependency, Type) :-
dependency_condition(ID, Package, Dependency),
dependency_type(ID, Type),
build(Package),
not external(Package),
condition_holds(ID).
% We cut off dependencies of externals (as we don't really know them).
% Don't impose constraints on dependencies that don't exist.
do_not_impose(ID) :-
not dependency_holds(Package, Dependency, _),
dependency_condition(ID, Package, Dependency).
% specs themselves. This attr is used in constraints from dependency conditions
attr("spack_installed", Package) :- build(Package), not external(Package).
% declared dependencies are real if they're not virtual AND
% the package is not an external.
% They're only triggered if the associated dependnecy condition holds.
attr("depends_on", Package, Dependency, Type)
:- dependency_holds(Package, Dependency, Type),
:- attr("dependency_holds", Package, Dependency, Type),
not virtual(Dependency).
% every root must be a node
attr("node", Package) :- attr("root", Package).
% dependencies imply new nodes
attr("node", Dependency) :- attr("node", Package), depends_on(Package, Dependency).
% all nodes in the graph must be reachable from some root
% this ensures a user can't say `zlib ^libiconv` (neither of which have any
% dependencies) and get a two-node unconnected graph
@@ -296,14 +288,17 @@ error(1, Msg) :- attr("node", Package),
% if a package depends on a virtual, it's not external and we have a
% provider for that virtual then it depends on the provider
attr("depends_on", Package, Provider, Type)
:- dependency_holds(Package, Virtual, Type),
:- attr("dependency_holds", Package, Virtual, Type),
provider(Provider, Virtual),
not external(Package).
% dependencies on virtuals also imply that the virtual is a virtual node
attr("virtual_node", Virtual)
:- dependency_holds(Package, Virtual, Type),
virtual(Virtual), not external(Package).
% If a package depends on a provider, the provider must be a node
% nodes that are not indirected by a virtual are instantiated
% directly from the imposed constraints of the dependency condition
attr("node", Provider)
:- attr("dependency_holds", Package, Virtual, Type),
provider(Provider, Virtual),
not external(Package).
% If there's a virtual node, we must select one and only one provider.
% The provider must be selected among the possible providers.
@@ -330,17 +325,11 @@ attr("root", Package) :- attr("virtual_root", Virtual), provider(Package, Virtua
% for environments that are concretized together (e.g. where we
% asks to install "mpich" and "hdf5+mpi" and we want "mpich" to
% be the mpi provider)
provider(Package, Virtual) :- attr("node", Package), virtual_condition_holds(Package, Virtual).
% The provider provides the virtual if some provider condition holds.
virtual_condition_holds(Provider, Virtual) :-
provider_condition(ID, Provider, Virtual),
condition_holds(ID),
virtual(Virtual).
provider(Package, Virtual) :- attr("node", Package), attr("virtual_condition_holds", Package, Virtual).
% A package cannot be the actual provider for a virtual if it does not
% fulfill the conditions to provide that virtual
:- provider(Package, Virtual), not virtual_condition_holds(Package, Virtual),
:- provider(Package, Virtual), not attr("virtual_condition_holds", Package, Virtual),
internal_error("Virtual when provides not respected").
#defined possible_provider/2.
@@ -382,14 +371,8 @@ possible_provider_weight(Dependency, Virtual, 100, "fallback") :- provider(Depen
% do not warn if generated program contains none of these.
#defined possible_provider/2.
#defined provider_condition/3.
#defined required_provider_condition/3.
#defined required_provider_condition/4.
#defined required_provider_condition/5.
#defined required_provider_condition/6.
#defined declared_dependency/3.
#defined virtual/1.
#defined virtual_condition_holds/2.
#defined external/1.
#defined external_spec/2.
#defined external_version_declared/4.
@@ -437,25 +420,15 @@ external(Package) :- attr("external_spec_selected", Package, _).
% determine if an external spec has been selected
attr("external_spec_selected", Package, LocalIndex) :-
external_conditions_hold(Package, LocalIndex),
attr("external_conditions_hold", Package, LocalIndex),
attr("node", Package),
not attr("hash", Package, _).
external_conditions_hold(Package, LocalIndex) :-
possible_external(ID, Package, LocalIndex), condition_holds(ID).
% it cannot happen that a spec is external, but none of the external specs
% conditions hold.
error(100, "Attempted to use external for '{0}' which does not satisfy any configured external spec", Package)
:- external(Package),
not external_conditions_hold(Package, _).
#defined possible_external/3.
#defined external_spec_index/3.
#defined external_spec_condition/3.
#defined external_spec_condition/4.
#defined external_spec_condition/5.
#defined external_spec_condition/6.
not attr("external_conditions_hold", Package, _).
%-----------------------------------------------------------------------------
% Config required semantics
@@ -594,7 +567,6 @@ attr("variant_value", Package, Variant, Value) :-
variant(Package, Variant),
build(Package).
error(100, "'{0}' required multiple values for single-valued variant '{1}'", Package, Variant)
:- attr("node", Package),
variant(Package, Variant),
@@ -665,7 +637,7 @@ variant_default_not_used(Package, Variant, Value)
external_with_variant_set(Package, Variant, Value)
:- attr("variant_value", Package, Variant, Value),
condition_requirement(ID, "variant_value", Package, Variant, Value),
possible_external(ID, Package, _),
imposed_constraint(ID, "external_conditions_hold", Package, _),
external(Package),
attr("node", Package).

View File

@@ -23,5 +23,12 @@
#show error/4.
#show error/5.
#show error/6.
#show error/7.
#show error/8.
#show error/9.
% show cause -> effect data for errors
#show condition_cause/2.
#show condition/2.
% debug

View File

@@ -679,6 +679,16 @@ def from_dict(d):
d = d["compiler"]
return CompilerSpec(d["name"], vn.VersionList.from_dict(d))
@property
def display_str(self):
"""Equivalent to {compiler.name}{@compiler.version} for Specs, without extra
@= for readability."""
if self.concrete:
return f"{self.name}@{self.version}"
elif self.versions != vn.any_version:
return f"{self.name}@{self.versions}"
return self.name
def __str__(self):
out = self.name
if self.versions and self.versions != vn.any_version:
@@ -1730,14 +1740,14 @@ def traverse_edges(self, **kwargs):
def short_spec(self):
"""Returns a version of the spec with the dependencies hashed
instead of completely enumerated."""
spec_format = "{name}{@version}{%compiler}"
spec_format = "{name}{@version}{%compiler.name}{@compiler.version}"
spec_format += "{variants}{arch=architecture}{/hash:7}"
return self.format(spec_format)
@property
def cshort_spec(self):
"""Returns an auto-colorized version of ``self.short_spec``."""
spec_format = "{name}{@version}{%compiler}"
spec_format = "{name}{@version}{%compiler.name}{@compiler.version}"
spec_format += "{variants}{arch=architecture}{/hash:7}"
return self.cformat(spec_format)
@@ -4323,7 +4333,7 @@ def write_attribute(spec, attribute, color):
if callable(current):
raise SpecFormatStringError("Attempted to format callable object")
if not current:
if current is None:
# We're not printing anything
return

View File

@@ -4,7 +4,7 @@
# SPDX-License-Identifier: (Apache-2.0 OR MIT)
import itertools
import textwrap
from typing import List
from typing import List, Optional, Tuple
import llnl.util.lang
@@ -66,17 +66,17 @@ def to_dict(self):
return dict(d)
def make_environment(dirs=None):
"""Returns an configured environment for template rendering."""
@llnl.util.lang.memoized
def make_environment(dirs: Optional[Tuple[str, ...]] = None):
"""Returns a configured environment for template rendering."""
# Import at this scope to avoid slowing Spack startup down
import jinja2
if dirs is None:
# Default directories where to search for templates
builtins = spack.config.get("config:template_dirs", ["$spack/share/spack/templates"])
extensions = spack.extensions.get_template_dirs()
dirs = [canonicalize_path(d) for d in itertools.chain(builtins, extensions)]
# avoid importing this at the top level as it's used infrequently and
# slows down startup a bit.
import jinja2
dirs = tuple(canonicalize_path(d) for d in itertools.chain(builtins, extensions))
# Loader for the templates
loader = jinja2.FileSystemLoader(dirs)

View File

@@ -3,6 +3,7 @@
#
# SPDX-License-Identifier: (Apache-2.0 OR MIT)
import pickle
import sys
import pytest
@@ -39,7 +40,10 @@ def test_dump(tmpdir):
with tmpdir.as_cwd():
build_env("--dump", _out_file, "zlib")
with open(_out_file) as f:
assert any(line.startswith("PATH=") for line in f.readlines())
if sys.platform == "win32":
assert any(line.startswith('set "PATH=') for line in f.readlines())
else:
assert any(line.startswith("PATH=") for line in f.readlines())
@pytest.mark.usefixtures("config", "mock_packages", "working_env")

View File

@@ -204,8 +204,8 @@ def test_compiler_find_mixed_suffixes(no_compilers_yaml, working_env, clangdir):
os.environ["PATH"] = str(clangdir)
output = compiler("find", "--scope=site")
assert "clang@=11.0.0" in output
assert "gcc@=8.4.0" in output
assert "clang@11.0.0" in output
assert "gcc@8.4.0" in output
config = spack.compilers.get_compiler_config("site", False)
clang = next(c["compiler"] for c in config if c["compiler"]["spec"] == "clang@=11.0.0")
@@ -246,8 +246,8 @@ def test_compiler_find_prefer_no_suffix(no_compilers_yaml, working_env, clangdir
os.environ["PATH"] = str(clangdir)
output = compiler("find", "--scope=site")
assert "clang@=11.0.0" in output
assert "gcc@=8.4.0" in output
assert "clang@11.0.0" in output
assert "gcc@8.4.0" in output
config = spack.compilers.get_compiler_config("site", False)
clang = next(c["compiler"] for c in config if c["compiler"]["spec"] == "clang@=11.0.0")

View File

@@ -390,6 +390,19 @@ def test_remove_after_concretize():
assert not any(s.name == "mpileaks" for s in env_specs)
def test_remove_before_concretize():
e = ev.create("test")
e.unify = True
e.add("mpileaks")
e.concretize()
e.remove("mpileaks")
e.concretize()
assert not list(e.concretized_specs())
def test_remove_command():
env("create", "test")
assert "test" in env("list")
@@ -2675,7 +2688,7 @@ def test_modules_relative_to_views(environment_from_manifest, install_mockery, m
spec = e.specs_by_hash[e.concretized_order[0]]
view_prefix = e.default_view.get_projection_for_spec(spec)
modules_glob = "%s/modules/**/*" % e.path
modules_glob = "%s/modules/**/*/*" % e.path
modules = glob.glob(modules_glob)
assert len(modules) == 1
module = modules[0]
@@ -2711,12 +2724,12 @@ def test_multiple_modules_post_env_hook(environment_from_manifest, install_mocke
spec = e.specs_by_hash[e.concretized_order[0]]
view_prefix = e.default_view.get_projection_for_spec(spec)
modules_glob = "%s/modules/**/*" % e.path
modules_glob = "%s/modules/**/*/*" % e.path
modules = glob.glob(modules_glob)
assert len(modules) == 1
module = modules[0]
full_modules_glob = "%s/full_modules/**/*" % e.path
full_modules_glob = "%s/full_modules/**/*/*" % e.path
full_modules = glob.glob(full_modules_glob)
assert len(full_modules) == 1
full_module = full_modules[0]
@@ -3299,3 +3312,22 @@ def test_environment_created_in_users_location(mutable_config, tmpdir):
assert dir_name in out
assert env_dir in ev.root(dir_name)
assert os.path.isdir(os.path.join(env_dir, dir_name))
def test_environment_created_from_lockfile_has_view(mock_packages, tmpdir):
"""When an env is created from a lockfile, a view should be generated for it"""
env_a = str(tmpdir.join("a"))
env_b = str(tmpdir.join("b"))
# Create an environment and install a package in it
env("create", "-d", env_a)
with ev.Environment(env_a):
add("libelf")
install("--fake")
# Create another environment from the lockfile of the first environment
env("create", "-d", env_b, os.path.join(env_a, "spack.lock"))
# Make sure the view was created
with ev.Environment(env_b) as e:
assert os.path.isdir(e.view_path_default)

View File

@@ -357,3 +357,18 @@ def test_find_loaded(database, working_env):
output = find("--loaded")
expected = find()
assert output == expected
@pytest.mark.regression("37712")
def test_environment_with_version_range_in_compiler_doesnt_fail(tmp_path):
"""Tests that having an active environment with a root spec containing a compiler constrained
by a version range (i.e. @X.Y rather the single version than @=X.Y) doesn't result in an error
when invoking "spack find".
"""
test_environment = ev.create_in_dir(tmp_path)
test_environment.add("zlib %gcc@12.1.0")
test_environment.write()
with test_environment:
output = find()
assert "zlib%gcc@12.1.0" in output

View File

@@ -319,3 +319,17 @@ def test_report_filename_for_cdash(install_mockery_mutable_config, mock_fetch):
spack.cmd.common.arguments.sanitize_reporter_options(args)
filename = spack.cmd.test.report_filename(args, suite)
assert filename != "https://blahblah/submit.php?project=debugging"
def test_test_output_multiple_specs(
mock_test_stage, mock_packages, mock_archive, mock_fetch, install_mockery_mutable_config
):
"""Ensure proper reporting for suite with skipped, failing, and passed tests."""
install("test-error", "simple-standalone-test@0.9", "simple-standalone-test@1.0")
out = spack_test("run", "test-error", "simple-standalone-test", fail_on_error=False)
# Note that a spec with passing *and* skipped tests is still considered
# to have passed at this level. If you want to see the spec-specific
# part result summaries, you'll have to look at the "test-out.txt" files
# for each spec.
assert "1 failed, 2 passed of 3 specs" in out

View File

@@ -367,8 +367,11 @@ def test_requirement_adds_multiple_new_versions(
def test_preference_adds_new_version(
concretize_scope, test_repo, mock_git_version_info, monkeypatch
):
"""Normally a preference cannot define a new version, but that constraint
is ignored if the version is a Git hash-based version.
"""
if spack.config.get("config:concretizer") == "original":
pytest.skip("Original concretizer does not support configuration requirements")
pytest.skip("Original concretizer does not enforce this constraint for preferences")
repo_path, filename, commits = mock_git_version_info
monkeypatch.setattr(
@@ -391,6 +394,29 @@ def test_preference_adds_new_version(
assert not s3.satisfies("@2.3")
def test_external_adds_new_version_that_is_preferred(concretize_scope, test_repo):
"""Test that we can use a version, not declared in package recipe, as the
preferred version if that version appears in an external spec.
"""
if spack.config.get("config:concretizer") == "original":
pytest.skip("Original concretizer does not enforce this constraint for preferences")
conf_str = """\
packages:
y:
version: ["2.7"]
externals:
- spec: y@2.7 # Not defined in y
prefix: /fake/nonexistent/path/
buildable: false
"""
update_packages_config(conf_str)
spec = Spec("x").concretized()
assert spec["y"].satisfies("@2.7")
assert spack.version.Version("2.7") not in spec["y"].package.versions
def test_requirement_is_successfully_applied(concretize_scope, test_repo):
"""If a simple requirement can be satisfied, make sure the
concretization succeeds and the requirement spec is applied.

View File

@@ -4,7 +4,7 @@ lmod:
hash_length: 0
core_compilers:
- 'clang@3.3'
- 'clang@12.0.0'
core_specs:
- 'mpich@3.0.1'

View File

@@ -0,0 +1,5 @@
enable:
- lmod
lmod:
core_compilers:
- 'clang@12.0.0'

View File

@@ -0,0 +1,5 @@
enable:
- lmod
lmod:
core_compilers:
- 'clang@=12.0.0'

View File

@@ -31,194 +31,164 @@ class Amdfftw(FftwBase):
Example : spack install amdfftw precision=float
"""
_name = 'amdfftw'
_name = "amdfftw"
homepage = "https://developer.amd.com/amd-aocl/fftw/"
url = "https://github.com/amd/amd-fftw/archive/3.0.tar.gz"
git = "https://github.com/amd/amd-fftw.git"
maintainers = ['amd-toolchain-support']
maintainers("amd-toolchain-support")
version('3.1', sha256='3e777f3acef13fa1910db097e818b1d0d03a6a36ef41186247c6ab1ab0afc132')
version('3.0.1', sha256='87030c6bbb9c710f0a64f4f306ba6aa91dc4b182bb804c9022b35aef274d1a4c')
version('3.0', sha256='a69deaf45478a59a69f77c4f7e9872967f1cfe996592dd12beb6318f18ea0bcd')
version('2.2', sha256='de9d777236fb290c335860b458131678f75aa0799c641490c644c843f0e246f8')
version("3.1", sha256="3e777f3acef13fa1910db097e818b1d0d03a6a36ef41186247c6ab1ab0afc132")
version("3.0.1", sha256="87030c6bbb9c710f0a64f4f306ba6aa91dc4b182bb804c9022b35aef274d1a4c")
version("3.0", sha256="a69deaf45478a59a69f77c4f7e9872967f1cfe996592dd12beb6318f18ea0bcd")
version("2.2", sha256="de9d777236fb290c335860b458131678f75aa0799c641490c644c843f0e246f8")
variant('shared', default=True,
description='Builds a shared version of the library')
variant('openmp', default=True,
description='Enable OpenMP support')
variant('threads', default=False,
description='Enable SMP threads support')
variant('debug', default=False,
description='Builds a debug version of the library')
variant("shared", default=True, description="Builds a shared version of the library")
variant("openmp", default=True, description="Enable OpenMP support")
variant("threads", default=False, description="Enable SMP threads support")
variant("debug", default=False, description="Builds a debug version of the library")
variant(
'amd-fast-planner',
"amd-fast-planner",
default=False,
description='Option to reduce the planning time without much'
'tradeoff in the performance. It is supported for'
'Float and double precisions only.')
description="Option to reduce the planning time without much"
"tradeoff in the performance. It is supported for"
"Float and double precisions only.",
)
variant("amd-top-n-planner", default=False, description="Build with amd-top-n-planner support")
variant(
'amd-top-n-planner',
default=False,
description='Build with amd-top-n-planner support')
variant(
'amd-mpi-vader-limit',
default=False,
description='Build with amd-mpi-vader-limit support')
variant(
'static',
default=False,
description='Build with static suppport')
variant(
'amd-trans',
default=False,
description='Build with amd-trans suppport')
variant(
'amd-app-opt',
default=False,
description='Build with amd-app-opt suppport')
"amd-mpi-vader-limit", default=False, description="Build with amd-mpi-vader-limit support"
)
variant("static", default=False, description="Build with static suppport")
variant("amd-trans", default=False, description="Build with amd-trans suppport")
variant("amd-app-opt", default=False, description="Build with amd-app-opt suppport")
depends_on('texinfo')
depends_on("texinfo")
provides('fftw-api@3', when='@2:')
provides("fftw-api@3", when="@2:")
conflicts(
'precision=quad',
when='@2.2 %aocc',
msg='Quad precision is not supported by AOCC clang version 2.2')
"precision=quad",
when="@2.2 %aocc",
msg="Quad precision is not supported by AOCC clang version 2.2",
)
conflicts(
'+debug',
when='@2.2 %aocc',
msg='debug mode is not supported by AOCC clang version 2.2')
"+debug", when="@2.2 %aocc", msg="debug mode is not supported by AOCC clang version 2.2"
)
conflicts("%gcc@:7.2", when="@2.2:", msg="GCC version above 7.2 is required for AMDFFTW")
conflicts(
'%gcc@:7.2',
when='@2.2:',
msg='GCC version above 7.2 is required for AMDFFTW')
"+amd-fast-planner ", when="+mpi", msg="mpi thread is not supported with amd-fast-planner"
)
conflicts(
'+amd-fast-planner ',
when='+mpi',
msg='mpi thread is not supported with amd-fast-planner')
"+amd-fast-planner", when="@2.2", msg="amd-fast-planner is supported from 3.0 onwards"
)
conflicts(
'+amd-fast-planner',
when='@2.2',
msg='amd-fast-planner is supported from 3.0 onwards')
"+amd-fast-planner",
when="precision=quad",
msg="Quad precision is not supported with amd-fast-planner",
)
conflicts(
'+amd-fast-planner',
when='precision=quad',
msg='Quad precision is not supported with amd-fast-planner')
"+amd-fast-planner",
when="precision=long_double",
msg="long_double precision is not supported with amd-fast-planner",
)
conflicts(
'+amd-fast-planner',
when='precision=long_double',
msg='long_double precision is not supported with amd-fast-planner')
"+amd-top-n-planner",
when="@:3.0.0",
msg="amd-top-n-planner is supported from 3.0.1 onwards",
)
conflicts(
'+amd-top-n-planner',
when='@:3.0.0',
msg='amd-top-n-planner is supported from 3.0.1 onwards')
"+amd-top-n-planner",
when="precision=long_double",
msg="long_double precision is not supported with amd-top-n-planner",
)
conflicts(
'+amd-top-n-planner',
when='precision=long_double',
msg='long_double precision is not supported with amd-top-n-planner')
"+amd-top-n-planner",
when="precision=quad",
msg="Quad precision is not supported with amd-top-n-planner",
)
conflicts(
'+amd-top-n-planner',
when='precision=quad',
msg='Quad precision is not supported with amd-top-n-planner')
"+amd-top-n-planner",
when="+amd-fast-planner",
msg="amd-top-n-planner cannot be used with amd-fast-planner",
)
conflicts(
'+amd-top-n-planner',
when='+amd-fast-planner',
msg='amd-top-n-planner cannot be used with amd-fast-planner')
"+amd-top-n-planner", when="+threads", msg="amd-top-n-planner works only for single thread"
)
conflicts(
'+amd-top-n-planner',
when='+threads',
msg='amd-top-n-planner works only for single thread')
"+amd-top-n-planner", when="+mpi", msg="mpi thread is not supported with amd-top-n-planner"
)
conflicts(
'+amd-top-n-planner',
when='+mpi',
msg='mpi thread is not supported with amd-top-n-planner')
"+amd-top-n-planner",
when="+openmp",
msg="openmp thread is not supported with amd-top-n-planner",
)
conflicts(
'+amd-top-n-planner',
when='+openmp',
msg='openmp thread is not supported with amd-top-n-planner')
"+amd-mpi-vader-limit",
when="@:3.0.0",
msg="amd-mpi-vader-limit is supported from 3.0.1 onwards",
)
conflicts(
'+amd-mpi-vader-limit',
when='@:3.0.0',
msg='amd-mpi-vader-limit is supported from 3.0.1 onwards')
"+amd-mpi-vader-limit",
when="precision=quad",
msg="Quad precision is not supported with amd-mpi-vader-limit",
)
conflicts("+amd-trans", when="+threads", msg="amd-trans works only for single thread")
conflicts("+amd-trans", when="+mpi", msg="mpi thread is not supported with amd-trans")
conflicts("+amd-trans", when="+openmp", msg="openmp thread is not supported with amd-trans")
conflicts(
'+amd-mpi-vader-limit',
when='precision=quad',
msg='Quad precision is not supported with amd-mpi-vader-limit')
"+amd-trans",
when="precision=long_double",
msg="long_double precision is not supported with amd-trans",
)
conflicts(
'+amd-trans',
when='+threads',
msg='amd-trans works only for single thread')
"+amd-trans", when="precision=quad", msg="Quad precision is not supported with amd-trans"
)
conflicts("+amd-app-opt", when="@:3.0.1", msg="amd-app-opt is supported from 3.1 onwards")
conflicts("+amd-app-opt", when="+mpi", msg="mpi thread is not supported with amd-app-opt")
conflicts(
'+amd-trans',
when='+mpi',
msg='mpi thread is not supported with amd-trans')
"+amd-app-opt",
when="precision=long_double",
msg="long_double precision is not supported with amd-app-opt",
)
conflicts(
'+amd-trans',
when='+openmp',
msg='openmp thread is not supported with amd-trans')
conflicts(
'+amd-trans',
when='precision=long_double',
msg='long_double precision is not supported with amd-trans')
conflicts(
'+amd-trans',
when='precision=quad',
msg='Quad precision is not supported with amd-trans')
conflicts(
'+amd-app-opt',
when='@:3.0.1',
msg='amd-app-opt is supported from 3.1 onwards')
conflicts(
'+amd-app-opt',
when='+mpi',
msg='mpi thread is not supported with amd-app-opt')
conflicts(
'+amd-app-opt',
when='precision=long_double',
msg='long_double precision is not supported with amd-app-opt')
conflicts(
'+amd-app-opt',
when='precision=quad',
msg='Quad precision is not supported with amd-app-opt')
"+amd-app-opt",
when="precision=quad",
msg="Quad precision is not supported with amd-app-opt",
)
def configure(self, spec, prefix):
"""Configure function"""
# Base options
options = [
'--prefix={0}'.format(prefix),
'--enable-amd-opt'
]
options = ["--prefix={0}".format(prefix), "--enable-amd-opt"]
# Check if compiler is AOCC
if '%aocc' in spec:
options.append('CC={0}'.format(os.path.basename(spack_cc)))
options.append('FC={0}'.format(os.path.basename(spack_fc)))
options.append('F77={0}'.format(os.path.basename(spack_fc)))
if "%aocc" in spec:
options.append("CC={0}".format(os.path.basename(spack_cc)))
options.append("FC={0}".format(os.path.basename(spack_fc)))
options.append("F77={0}".format(os.path.basename(spack_fc)))
if '+debug' in spec:
options.append('--enable-debug')
if "+debug" in spec:
options.append("--enable-debug")
if '+mpi' in spec:
options.append('--enable-mpi')
options.append('--enable-amd-mpifft')
if "+mpi" in spec:
options.append("--enable-mpi")
options.append("--enable-amd-mpifft")
else:
options.append('--disable-mpi')
options.append('--disable-amd-mpifft')
options.append("--disable-mpi")
options.append("--disable-amd-mpifft")
options.extend(self.enable_or_disable('shared'))
options.extend(self.enable_or_disable('openmp'))
options.extend(self.enable_or_disable('threads'))
options.extend(self.enable_or_disable('amd-fast-planner'))
options.extend(self.enable_or_disable('amd-top-n-planner'))
options.extend(self.enable_or_disable('amd-mpi-vader-limit'))
options.extend(self.enable_or_disable('static'))
options.extend(self.enable_or_disable('amd-trans'))
options.extend(self.enable_or_disable('amd-app-opt'))
options.extend(self.enable_or_disable("shared"))
options.extend(self.enable_or_disable("openmp"))
options.extend(self.enable_or_disable("threads"))
options.extend(self.enable_or_disable("amd-fast-planner"))
options.extend(self.enable_or_disable("amd-top-n-planner"))
options.extend(self.enable_or_disable("amd-mpi-vader-limit"))
options.extend(self.enable_or_disable("static"))
options.extend(self.enable_or_disable("amd-trans"))
options.extend(self.enable_or_disable("amd-app-opt"))
if not self.compiler.f77 or not self.compiler.fc:
options.append('--disable-fortran')
options.append("--disable-fortran")
# Cross compilation is supported in amd-fftw by making use of target
# variable to set AMD_ARCH configure option.
@@ -226,17 +196,16 @@ class Amdfftw(FftwBase):
# use target variable to set appropriate -march option in AMD_ARCH.
arch = spec.architecture
options.append(
'AMD_ARCH={0}'.format(
arch.target.optimization_flags(
spec.compiler).split('=')[-1]))
"AMD_ARCH={0}".format(arch.target.optimization_flags(spec.compiler).split("=")[-1])
)
# Specific SIMD support.
# float and double precisions are supported
simd_features = ['sse2', 'avx', 'avx2']
simd_features = ["sse2", "avx", "avx2"]
simd_options = []
for feature in simd_features:
msg = '--enable-{0}' if feature in spec.target else '--disable-{0}'
msg = "--enable-{0}" if feature in spec.target else "--disable-{0}"
simd_options.append(msg.format(feature))
# When enabling configure option "--enable-amd-opt", do not use the
@@ -246,20 +215,19 @@ class Amdfftw(FftwBase):
# Double is the default precision, for all the others we need
# to enable the corresponding option.
enable_precision = {
'float': ['--enable-float'],
'double': None,
'long_double': ['--enable-long-double'],
'quad': ['--enable-quad-precision']
"float": ["--enable-float"],
"double": None,
"long_double": ["--enable-long-double"],
"quad": ["--enable-quad-precision"],
}
# Different precisions must be configured and compiled one at a time
configure = Executable('../configure')
configure = Executable("../configure")
for precision in self.selected_precisions:
opts = (enable_precision[precision] or []) + options[:]
# SIMD optimizations are available only for float and double
if precision in ('float', 'double'):
if precision in ("float", "double"):
opts += simd_options
with working_dir(precision, create=True):

View File

@@ -16,21 +16,21 @@ from spack.package import *
class Llvm(CMakePackage, CudaPackage):
"""The LLVM Project is a collection of modular and reusable compiler and
toolchain technologies. Despite its name, LLVM has little to do
with traditional virtual machines, though it does provide helpful
libraries that can be used to build them. The name "LLVM" itself
is not an acronym; it is the full name of the project.
toolchain technologies. Despite its name, LLVM has little to do
with traditional virtual machines, though it does provide helpful
libraries that can be used to build them. The name "LLVM" itself
is not an acronym; it is the full name of the project.
"""
homepage = "https://llvm.org/"
url = "https://github.com/llvm/llvm-project/archive/llvmorg-7.1.0.tar.gz"
list_url = "https://releases.llvm.org/download.html"
git = "https://github.com/llvm/llvm-project"
maintainers = ['trws', 'haampie']
maintainers("trws", "haampie")
tags = ['e4s']
tags = ["e4s"]
generator = 'Ninja'
generator = "Ninja"
family = "compiler" # Used by lmod
@@ -80,13 +80,12 @@ class Llvm(CMakePackage, CudaPackage):
# to save space, build with `build_type=Release`.
variant(
"clang",
default=True,
description="Build the LLVM C/C++/Objective-C compiler frontend",
"clang", default=True, description="Build the LLVM C/C++/Objective-C compiler frontend"
)
variant(
"flang",
default=False, when='@11: +clang',
default=False,
when="@11: +clang",
description="Build the LLVM Fortran compiler frontend "
"(experimental - parser only, needs GCC)",
)
@@ -95,27 +94,23 @@ class Llvm(CMakePackage, CudaPackage):
default=False,
description="Include debugging code in OpenMP runtime libraries",
)
variant("lldb", default=True, when='+clang', description="Build the LLVM debugger")
variant("lldb", default=True, when="+clang", description="Build the LLVM debugger")
variant("lld", default=True, description="Build the LLVM linker")
variant("mlir", default=False, when='@10:', description="Build with MLIR support")
variant("mlir", default=False, when="@10:", description="Build with MLIR support")
variant(
"internal_unwind",
default=True, when='+clang',
description="Build the libcxxabi libunwind",
"internal_unwind", default=True, when="+clang", description="Build the libcxxabi libunwind"
)
variant(
"polly",
default=True,
description="Build the LLVM polyhedral optimization plugin, "
"only builds for 3.7.0+",
description="Build the LLVM polyhedral optimization plugin, " "only builds for 3.7.0+",
)
variant(
"libcxx",
default=True, when='+clang',
description="Build the LLVM C++ standard library",
"libcxx", default=True, when="+clang", description="Build the LLVM C++ standard library"
)
variant(
"compiler-rt", when='+clang',
"compiler-rt",
when="+clang",
default=True,
description="Build LLVM compiler runtime, including sanitizers",
)
@@ -124,11 +119,7 @@ class Llvm(CMakePackage, CudaPackage):
default=(sys.platform != "darwin"),
description="Add support for LTO with the gold linker plugin",
)
variant(
"split_dwarf",
default=False,
description="Build with split dwarf information",
)
variant("split_dwarf", default=False, description="Build with split dwarf information")
variant(
"llvm_dylib",
default=True,
@@ -136,18 +127,40 @@ class Llvm(CMakePackage, CudaPackage):
)
variant(
"link_llvm_dylib",
default=False, when='+llvm_dylib',
default=False,
when="+llvm_dylib",
description="Link LLVM tools against the LLVM shared library",
)
variant(
"targets",
default="none",
description=("What targets to build. Spack's target family is always added "
"(e.g. X86 is automatically enabled when targeting znver2)."),
values=("all", "none", "aarch64", "amdgpu", "arm", "avr", "bpf", "cppbackend",
"hexagon", "lanai", "mips", "msp430", "nvptx", "powerpc", "riscv",
"sparc", "systemz", "webassembly", "x86", "xcore"),
multi=True
description=(
"What targets to build. Spack's target family is always added "
"(e.g. X86 is automatically enabled when targeting znver2)."
),
values=(
"all",
"none",
"aarch64",
"amdgpu",
"arm",
"avr",
"bpf",
"cppbackend",
"hexagon",
"lanai",
"mips",
"msp430",
"nvptx",
"powerpc",
"riscv",
"sparc",
"systemz",
"webassembly",
"x86",
"xcore",
),
multi=True,
)
variant(
"build_type",
@@ -157,51 +170,52 @@ class Llvm(CMakePackage, CudaPackage):
)
variant(
"omp_tsan",
default=False, when='@6:',
default=False,
when="@6:",
description="Build with OpenMP capable thread sanitizer",
)
variant(
"omp_as_runtime",
default=True,
when='+clang @12:',
when="+clang @12:",
description="Build OpenMP runtime via ENABLE_RUNTIME by just-built Clang",
)
variant('code_signing', default=False,
when='+lldb platform=darwin',
description="Enable code-signing on macOS")
variant("python", default=False, description="Install python bindings")
variant('version_suffix', default='none', description="Add a symbol suffix")
variant(
'shlib_symbol_version',
default='none',
"code_signing",
default=False,
when="+lldb platform=darwin",
description="Enable code-signing on macOS",
)
variant("python", default=False, description="Install python bindings")
variant("version_suffix", default="none", description="Add a symbol suffix")
variant(
"shlib_symbol_version",
default="none",
description="Add shared library symbol version",
when='@13:'
when="@13:",
)
variant(
'z3',
default=False,
when='+clang @8:',
description='Use Z3 for the clang static analyzer'
"z3", default=False, when="+clang @8:", description="Use Z3 for the clang static analyzer"
)
provides('libllvm@14', when='@14.0.0:14')
provides('libllvm@13', when='@13.0.0:13')
provides('libllvm@12', when='@12.0.0:12')
provides('libllvm@11', when='@11.0.0:11')
provides('libllvm@10', when='@10.0.0:10')
provides('libllvm@9', when='@9.0.0:9')
provides('libllvm@8', when='@8.0.0:8')
provides('libllvm@7', when='@7.0.0:7')
provides('libllvm@6', when='@6.0.0:6')
provides('libllvm@5', when='@5.0.0:5')
provides('libllvm@4', when='@4.0.0:4')
provides('libllvm@3', when='@3.0.0:3')
provides("libllvm@14", when="@14.0.0:14")
provides("libllvm@13", when="@13.0.0:13")
provides("libllvm@12", when="@12.0.0:12")
provides("libllvm@11", when="@11.0.0:11")
provides("libllvm@10", when="@10.0.0:10")
provides("libllvm@9", when="@9.0.0:9")
provides("libllvm@8", when="@8.0.0:8")
provides("libllvm@7", when="@7.0.0:7")
provides("libllvm@6", when="@6.0.0:6")
provides("libllvm@5", when="@5.0.0:5")
provides("libllvm@4", when="@4.0.0:4")
provides("libllvm@3", when="@3.0.0:3")
extends("python", when="+python")
# Build dependency
depends_on("cmake@3.4.3:", type="build")
depends_on('cmake@3.13.4:', type='build', when='@12:')
depends_on("cmake@3.13.4:", type="build", when="@12:")
depends_on("ninja", type="build")
depends_on("python@2.7:2.8", when="@:4 ~python", type="build")
depends_on("python", when="@5: ~python", type="build")
@@ -242,7 +256,7 @@ class Llvm(CMakePackage, CudaPackage):
# clang/lib: a lambda parameter cannot shadow an explicitly captured entity
conflicts("%clang@8:", when="@:4")
# Internal compiler error on gcc 8.4 on aarch64 https://bugzilla.redhat.com/show_bug.cgi?id=1958295
conflicts('%gcc@8.4:8.4.9', when='@12: target=aarch64:')
conflicts("%gcc@8.4:8.4.9", when="@12: target=aarch64:")
# When these versions are concretized, but not explicitly with +libcxx, these
# conflicts will enable clingo to set ~libcxx, making the build successful:
@@ -252,17 +266,17 @@ class Llvm(CMakePackage, CudaPackage):
# GCC 11 - latest stable release per GCC release page
# Clang: 11, 12 - latest two stable releases per LLVM release page
# AppleClang 12 - latest stable release per Xcode release page
conflicts("%gcc@:10", when="@13:+libcxx")
conflicts("%clang@:10", when="@13:+libcxx")
conflicts("%gcc@:10", when="@13:+libcxx")
conflicts("%clang@:10", when="@13:+libcxx")
conflicts("%apple-clang@:11", when="@13:+libcxx")
# libcxx-4 and compiler-rt-4 fail to build with "newer" clang and gcc versions:
conflicts('%gcc@7:', when='@:4+libcxx')
conflicts('%clang@6:', when='@:4+libcxx')
conflicts('%apple-clang@6:', when='@:4+libcxx')
conflicts('%gcc@7:', when='@:4+compiler-rt')
conflicts('%clang@6:', when='@:4+compiler-rt')
conflicts('%apple-clang@6:', when='@:4+compiler-rt')
conflicts("%gcc@7:", when="@:4+libcxx")
conflicts("%clang@6:", when="@:4+libcxx")
conflicts("%apple-clang@6:", when="@:4+libcxx")
conflicts("%gcc@7:", when="@:4+compiler-rt")
conflicts("%clang@6:", when="@:4+compiler-rt")
conflicts("%apple-clang@6:", when="@:4+compiler-rt")
# cuda_arch value must be specified
conflicts("cuda_arch=none", when="+cuda", msg="A value for cuda_arch must be specified.")
@@ -270,27 +284,27 @@ class Llvm(CMakePackage, CudaPackage):
# LLVM bug https://bugs.llvm.org/show_bug.cgi?id=48234
# CMake bug: https://gitlab.kitware.com/cmake/cmake/-/issues/21469
# Fixed in upstream versions of both
conflicts('^cmake@3.19.0', when='@6:11.0.0')
conflicts("^cmake@3.19.0", when="@6:11.0.0")
# Github issue #4986
patch("llvm_gcc7.patch", when="@4.0.0:4.0.1+lldb %gcc@7.0:")
# sys/ustat.h has been removed in favour of statfs from glibc-2.28. Use fixed sizes:
patch('llvm5-sanitizer-ustat.patch', when="@4:6.0.0+compiler-rt")
patch("llvm5-sanitizer-ustat.patch", when="@4:6.0.0+compiler-rt")
# Fix lld templates: https://bugs.freebsd.org/bugzilla/show_bug.cgi?id=230463
patch('llvm4-lld-ELF-Symbols.patch', when="@4+lld%clang@6:")
patch('llvm5-lld-ELF-Symbols.patch', when="@5+lld%clang@7:")
patch("llvm4-lld-ELF-Symbols.patch", when="@4+lld%clang@6:")
patch("llvm5-lld-ELF-Symbols.patch", when="@5+lld%clang@7:")
# Fix missing std:size_t in 'llvm@4:5' when built with '%clang@7:'
patch('xray_buffer_queue-cstddef.patch', when="@4:5+compiler-rt%clang@7:")
patch("xray_buffer_queue-cstddef.patch", when="@4:5+compiler-rt%clang@7:")
# https://github.com/llvm/llvm-project/commit/947f9692440836dcb8d88b74b69dd379d85974ce
patch('sanitizer-ipc_perm_mode.patch', when="@5:7+compiler-rt%clang@11:")
patch('sanitizer-ipc_perm_mode.patch', when="@5:9+compiler-rt%gcc@9:")
patch("sanitizer-ipc_perm_mode.patch", when="@5:7+compiler-rt%clang@11:")
patch("sanitizer-ipc_perm_mode.patch", when="@5:9+compiler-rt%gcc@9:")
# github.com/spack/spack/issues/24270: MicrosoftDemangle for %gcc@10: and %clang@13:
patch('missing-includes.patch', when='@8')
patch("missing-includes.patch", when="@8")
# Backport from llvm master + additional fix
# see https://bugs.llvm.org/show_bug.cgi?id=39696
@@ -315,33 +329,33 @@ class Llvm(CMakePackage, CudaPackage):
patch("llvm_python_path.patch", when="@:11")
# Workaround for issue https://github.com/spack/spack/issues/18197
patch('llvm7_intel.patch', when='@7 %intel@18.0.2,19.0.0:19.1.99')
patch("llvm7_intel.patch", when="@7 %intel@18.0.2,19.0.0:19.1.99")
# Remove cyclades support to build against newer kernel headers
# https://reviews.llvm.org/D102059
patch('no_cyclades.patch', when='@10:12.0.0')
patch('no_cyclades9.patch', when='@6:9')
patch("no_cyclades.patch", when="@10:12.0.0")
patch("no_cyclades9.patch", when="@6:9")
patch('llvm-gcc11.patch', when='@9:11%gcc@11:')
patch("llvm-gcc11.patch", when="@9:11%gcc@11:")
# add -lpthread to build OpenMP libraries with Fujitsu compiler
patch('llvm12-thread.patch', when='@12 %fj')
patch('llvm13-thread.patch', when='@13 %fj')
patch("llvm12-thread.patch", when="@12 %fj")
patch("llvm13-thread.patch", when="@13 %fj")
# avoid build failed with Fujitsu compiler
patch('llvm13-fujitsu.patch', when='@13 %fj')
patch("llvm13-fujitsu.patch", when="@13 %fj")
# patch for missing hwloc.h include for libompd
patch('llvm14-hwloc-ompd.patch', when='@14')
patch("llvm14-hwloc-ompd.patch", when="@14")
# make libflags a list in openmp subproject when ~omp_as_runtime
patch('libomp-libflags-as-list.patch', when='@3.7:')
patch("libomp-libflags-as-list.patch", when="@3.7:")
# The functions and attributes below implement external package
# detection for LLVM. See:
#
# https://spack.readthedocs.io/en/latest/packaging_guide.html#making-a-package-discoverable-with-spack-external-find
executables = ['clang', 'flang', 'ld.lld', 'lldb']
executables = ["clang", "flang", "ld.lld", "lldb"]
@classmethod
def filter_detected_exes(cls, prefix, exes_in_prefix):
@@ -351,7 +365,7 @@ class Llvm(CMakePackage, CudaPackage):
# on some port and would hang Spack during detection.
# clang-cl and clang-cpp are dev tools that we don't
# need to test
if any(x in exe for x in ('vscode', 'cpp', '-cl', '-gpu')):
if any(x in exe for x in ("vscode", "cpp", "-cl", "-gpu")):
continue
result.append(exe)
return result
@@ -360,20 +374,20 @@ class Llvm(CMakePackage, CudaPackage):
def determine_version(cls, exe):
version_regex = re.compile(
# Normal clang compiler versions are left as-is
r'clang version ([^ )\n]+)-svn[~.\w\d-]*|'
r"clang version ([^ )\n]+)-svn[~.\w\d-]*|"
# Don't include hyphenated patch numbers in the version
# (see https://github.com/spack/spack/pull/14365 for details)
r'clang version ([^ )\n]+?)-[~.\w\d-]*|'
r'clang version ([^ )\n]+)|'
r"clang version ([^ )\n]+?)-[~.\w\d-]*|"
r"clang version ([^ )\n]+)|"
# LLDB
r'lldb version ([^ )\n]+)|'
r"lldb version ([^ )\n]+)|"
# LLD
r'LLD ([^ )\n]+) \(compatible with GNU linkers\)'
r"LLD ([^ )\n]+) \(compatible with GNU linkers\)"
)
try:
compiler = Executable(exe)
output = compiler('--version', output=str, error=str)
if 'Apple' in output:
output = compiler("--version", output=str, error=str)
if "Apple" in output:
return None
match = version_regex.search(output)
if match:
@@ -387,38 +401,39 @@ class Llvm(CMakePackage, CudaPackage):
@classmethod
def determine_variants(cls, exes, version_str):
variants, compilers = ['+clang'], {}
variants, compilers = ["+clang"], {}
lld_found, lldb_found = False, False
for exe in exes:
if 'clang++' in exe:
compilers['cxx'] = exe
elif 'clang' in exe:
compilers['c'] = exe
elif 'flang' in exe:
variants.append('+flang')
compilers['fc'] = exe
compilers['f77'] = exe
elif 'ld.lld' in exe:
if "clang++" in exe:
compilers["cxx"] = exe
elif "clang" in exe:
compilers["c"] = exe
elif "flang" in exe:
variants.append("+flang")
compilers["fc"] = exe
compilers["f77"] = exe
elif "ld.lld" in exe:
lld_found = True
compilers['ld'] = exe
elif 'lldb' in exe:
compilers["ld"] = exe
elif "lldb" in exe:
lldb_found = True
compilers['lldb'] = exe
compilers["lldb"] = exe
variants.append('+lld' if lld_found else '~lld')
variants.append('+lldb' if lldb_found else '~lldb')
variants.append("+lld" if lld_found else "~lld")
variants.append("+lldb" if lldb_found else "~lldb")
return ''.join(variants), {'compilers': compilers}
return "".join(variants), {"compilers": compilers}
@classmethod
def validate_detected_spec(cls, spec, extra_attributes):
# For LLVM 'compilers' is a mandatory attribute
msg = ('the extra attribute "compilers" must be set for '
'the detected spec "{0}"'.format(spec))
assert 'compilers' in extra_attributes, msg
compilers = extra_attributes['compilers']
for key in ('c', 'cxx'):
msg = '{0} compiler not found for {1}'
msg = 'the extra attribute "compilers" must be set for ' 'the detected spec "{0}"'.format(
spec
)
assert "compilers" in extra_attributes, msg
compilers = extra_attributes["compilers"]
for key in ("c", "cxx"):
msg = "{0} compiler not found for {1}"
assert key in compilers, msg.format(key, spec)
@property
@@ -426,10 +441,10 @@ class Llvm(CMakePackage, CudaPackage):
msg = "cannot retrieve C compiler [spec is not concrete]"
assert self.spec.concrete, msg
if self.spec.external:
return self.spec.extra_attributes['compilers'].get('c', None)
return self.spec.extra_attributes["compilers"].get("c", None)
result = None
if '+clang' in self.spec:
result = os.path.join(self.spec.prefix.bin, 'clang')
if "+clang" in self.spec:
result = os.path.join(self.spec.prefix.bin, "clang")
return result
@property
@@ -437,10 +452,10 @@ class Llvm(CMakePackage, CudaPackage):
msg = "cannot retrieve C++ compiler [spec is not concrete]"
assert self.spec.concrete, msg
if self.spec.external:
return self.spec.extra_attributes['compilers'].get('cxx', None)
return self.spec.extra_attributes["compilers"].get("cxx", None)
result = None
if '+clang' in self.spec:
result = os.path.join(self.spec.prefix.bin, 'clang++')
if "+clang" in self.spec:
result = os.path.join(self.spec.prefix.bin, "clang++")
return result
@property
@@ -448,10 +463,10 @@ class Llvm(CMakePackage, CudaPackage):
msg = "cannot retrieve Fortran compiler [spec is not concrete]"
assert self.spec.concrete, msg
if self.spec.external:
return self.spec.extra_attributes['compilers'].get('fc', None)
return self.spec.extra_attributes["compilers"].get("fc", None)
result = None
if '+flang' in self.spec:
result = os.path.join(self.spec.prefix.bin, 'flang')
if "+flang" in self.spec:
result = os.path.join(self.spec.prefix.bin, "flang")
return result
@property
@@ -459,27 +474,25 @@ class Llvm(CMakePackage, CudaPackage):
msg = "cannot retrieve Fortran 77 compiler [spec is not concrete]"
assert self.spec.concrete, msg
if self.spec.external:
return self.spec.extra_attributes['compilers'].get('f77', None)
return self.spec.extra_attributes["compilers"].get("f77", None)
result = None
if '+flang' in self.spec:
result = os.path.join(self.spec.prefix.bin, 'flang')
if "+flang" in self.spec:
result = os.path.join(self.spec.prefix.bin, "flang")
return result
@property
def libs(self):
return LibraryList(self.llvm_config("--libfiles", "all",
result="list"))
return LibraryList(self.llvm_config("--libfiles", "all", result="list"))
@run_before('cmake')
@run_before("cmake")
def codesign_check(self):
if self.spec.satisfies("+code_signing"):
codesign = which('codesign')
mkdir('tmp')
llvm_check_file = join_path('tmp', 'llvm_check')
copy('/usr/bin/false', llvm_check_file)
codesign = which("codesign")
mkdir("tmp")
llvm_check_file = join_path("tmp", "llvm_check")
copy("/usr/bin/false", llvm_check_file)
try:
codesign('-f', '-s', 'lldb_codesign', '--dryrun',
llvm_check_file)
codesign("-f", "-s", "lldb_codesign", "--dryrun", llvm_check_file)
except ProcessError:
# Newer LLVM versions have a simple script that sets up
@@ -489,32 +502,32 @@ class Llvm(CMakePackage, CudaPackage):
setup()
except Exception:
raise RuntimeError(
'spack was unable to either find or set up'
'code-signing on your system. Please refer to'
'https://lldb.llvm.org/resources/build.html#'
'code-signing-on-macos for details on how to'
'create this identity.'
"spack was unable to either find or set up"
"code-signing on your system. Please refer to"
"https://lldb.llvm.org/resources/build.html#"
"code-signing-on-macos for details on how to"
"create this identity."
)
def flag_handler(self, name, flags):
if name == 'cxxflags':
if name == "cxxflags":
flags.append(self.compiler.cxx11_flag)
return(None, flags, None)
elif name == 'ldflags' and self.spec.satisfies('%intel'):
flags.append('-shared-intel')
return(None, flags, None)
return(flags, None, None)
return (None, flags, None)
elif name == "ldflags" and self.spec.satisfies("%intel"):
flags.append("-shared-intel")
return (None, flags, None)
return (flags, None, None)
def setup_build_environment(self, env):
"""When using %clang, add only its ld.lld-$ver and/or ld.lld to our PATH"""
if self.compiler.name in ['clang', 'apple-clang']:
for lld in 'ld.lld-{0}'.format(self.compiler.version.version[0]), 'ld.lld':
if self.compiler.name in ["clang", "apple-clang"]:
for lld in "ld.lld-{0}".format(self.compiler.version.version[0]), "ld.lld":
bin = os.path.join(os.path.dirname(self.compiler.cc), lld)
sym = os.path.join(self.stage.path, 'ld.lld')
sym = os.path.join(self.stage.path, "ld.lld")
if os.path.exists(bin) and not os.path.exists(sym):
mkdirp(self.stage.path)
os.symlink(bin, sym)
env.prepend_path('PATH', self.stage.path)
env.prepend_path("PATH", self.stage.path)
def setup_run_environment(self, env):
if "+clang" in self.spec:
@@ -531,7 +544,7 @@ class Llvm(CMakePackage, CudaPackage):
define = CMakePackage.define
from_variant = self.define_from_variant
python = spec['python']
python = spec["python"]
cmake_args = [
define("LLVM_REQUIRES_RTTI", True),
define("LLVM_ENABLE_RTTI", True),
@@ -544,14 +557,13 @@ class Llvm(CMakePackage, CudaPackage):
define("LIBOMP_HWLOC_INSTALL_DIR", spec["hwloc"].prefix),
]
version_suffix = spec.variants['version_suffix'].value
if version_suffix != 'none':
cmake_args.append(define('LLVM_VERSION_SUFFIX', version_suffix))
version_suffix = spec.variants["version_suffix"].value
if version_suffix != "none":
cmake_args.append(define("LLVM_VERSION_SUFFIX", version_suffix))
shlib_symbol_version = spec.variants.get('shlib_symbol_version', None)
if shlib_symbol_version is not None and shlib_symbol_version.value != 'none':
cmake_args.append(define('LLVM_SHLIB_SYMBOL_VERSION',
shlib_symbol_version.value))
shlib_symbol_version = spec.variants.get("shlib_symbol_version", None)
if shlib_symbol_version is not None and shlib_symbol_version.value != "none":
cmake_args.append(define("LLVM_SHLIB_SYMBOL_VERSION", shlib_symbol_version.value))
if python.version >= Version("3"):
cmake_args.append(define("Python3_EXECUTABLE", python.command.path))
@@ -562,47 +574,56 @@ class Llvm(CMakePackage, CudaPackage):
runtimes = []
if "+cuda" in spec:
cmake_args.extend([
define("CUDA_TOOLKIT_ROOT_DIR", spec["cuda"].prefix),
define("LIBOMPTARGET_NVPTX_COMPUTE_CAPABILITIES",
",".join(spec.variants["cuda_arch"].value)),
define("CLANG_OPENMP_NVPTX_DEFAULT_ARCH",
"sm_{0}".format(spec.variants["cuda_arch"].value[-1])),
])
cmake_args.extend(
[
define("CUDA_TOOLKIT_ROOT_DIR", spec["cuda"].prefix),
define(
"LIBOMPTARGET_NVPTX_COMPUTE_CAPABILITIES",
",".join(spec.variants["cuda_arch"].value),
),
define(
"CLANG_OPENMP_NVPTX_DEFAULT_ARCH",
"sm_{0}".format(spec.variants["cuda_arch"].value[-1]),
),
]
)
if "+omp_as_runtime" in spec:
cmake_args.extend([
define("LIBOMPTARGET_NVPTX_ENABLE_BCLIB", True),
# work around bad libelf detection in libomptarget
define("LIBOMPTARGET_DEP_LIBELF_INCLUDE_DIR",
spec["libelf"].prefix.include),
])
cmake_args.extend(
[
define("LIBOMPTARGET_NVPTX_ENABLE_BCLIB", True),
# work around bad libelf detection in libomptarget
define(
"LIBOMPTARGET_DEP_LIBELF_INCLUDE_DIR", spec["libelf"].prefix.include
),
]
)
else:
# still build libomptarget but disable cuda
cmake_args.extend([
define("CUDA_TOOLKIT_ROOT_DIR", "IGNORE"),
define("CUDA_SDK_ROOT_DIR", "IGNORE"),
define("CUDA_NVCC_EXECUTABLE", "IGNORE"),
define("LIBOMPTARGET_DEP_CUDA_DRIVER_LIBRARIES", "IGNORE"),
])
cmake_args.extend(
[
define("CUDA_TOOLKIT_ROOT_DIR", "IGNORE"),
define("CUDA_SDK_ROOT_DIR", "IGNORE"),
define("CUDA_NVCC_EXECUTABLE", "IGNORE"),
define("LIBOMPTARGET_DEP_CUDA_DRIVER_LIBRARIES", "IGNORE"),
]
)
cmake_args.append(from_variant("LIBOMPTARGET_ENABLE_DEBUG", "omp_debug"))
if "+lldb" in spec:
projects.append("lldb")
cmake_args.append(define('LLDB_ENABLE_LIBEDIT', True))
cmake_args.append(define('LLDB_ENABLE_NCURSES', True))
cmake_args.append(define('LLDB_ENABLE_LIBXML2', False))
if spec.version >= Version('10'):
cmake_args.append(from_variant("LLDB_ENABLE_PYTHON", 'python'))
cmake_args.append(define("LLDB_ENABLE_LIBEDIT", True))
cmake_args.append(define("LLDB_ENABLE_NCURSES", True))
cmake_args.append(define("LLDB_ENABLE_LIBXML2", False))
if spec.version >= Version("10"):
cmake_args.append(from_variant("LLDB_ENABLE_PYTHON", "python"))
else:
cmake_args.append(define("LLDB_DISABLE_PYTHON", '~python' in spec))
cmake_args.append(define("LLDB_DISABLE_PYTHON", "~python" in spec))
if spec.satisfies("@5.0.0: +python"):
cmake_args.append(define("LLDB_USE_SYSTEM_SIX", True))
if "+gold" in spec:
cmake_args.append(
define("LLVM_BINUTILS_INCDIR", spec["binutils"].prefix.include)
)
cmake_args.append(define("LLVM_BINUTILS_INCDIR", spec["binutils"].prefix.include))
if "+clang" in spec:
projects.append("clang")
@@ -612,10 +633,10 @@ class Llvm(CMakePackage, CudaPackage):
else:
projects.append("openmp")
if '@8' in spec:
cmake_args.append(from_variant('CLANG_ANALYZER_ENABLE_Z3_SOLVER', 'z3'))
elif '@9:' in spec:
cmake_args.append(from_variant('LLVM_ENABLE_Z3_SOLVER', 'z3'))
if "@8" in spec:
cmake_args.append(from_variant("CLANG_ANALYZER_ENABLE_Z3_SOLVER", "z3"))
elif "@9:" in spec:
cmake_args.append(from_variant("LLVM_ENABLE_Z3_SOLVER", "z3"))
if "+flang" in spec:
projects.append("flang")
@@ -634,26 +655,26 @@ class Llvm(CMakePackage, CudaPackage):
projects.append("polly")
cmake_args.append(define("LINK_POLLY_INTO_TOOLS", True))
cmake_args.extend([
define("BUILD_SHARED_LIBS", False),
from_variant("LLVM_BUILD_LLVM_DYLIB", "llvm_dylib"),
from_variant("LLVM_LINK_LLVM_DYLIB", "link_llvm_dylib"),
from_variant("LLVM_USE_SPLIT_DWARF", "split_dwarf"),
# By default on Linux, libc++.so is a ldscript. CMake fails to add
# CMAKE_INSTALL_RPATH to it, which fails. Statically link libc++abi.a
# into libc++.so, linking with -lc++ or -stdlib=libc++ is enough.
define('LIBCXX_ENABLE_STATIC_ABI_LIBRARY', True)
])
cmake_args.extend(
[
define("BUILD_SHARED_LIBS", False),
from_variant("LLVM_BUILD_LLVM_DYLIB", "llvm_dylib"),
from_variant("LLVM_LINK_LLVM_DYLIB", "link_llvm_dylib"),
from_variant("LLVM_USE_SPLIT_DWARF", "split_dwarf"),
# By default on Linux, libc++.so is a ldscript. CMake fails to add
# CMAKE_INSTALL_RPATH to it, which fails. Statically link libc++abi.a
# into libc++.so, linking with -lc++ or -stdlib=libc++ is enough.
define("LIBCXX_ENABLE_STATIC_ABI_LIBRARY", True),
]
)
cmake_args.append(define(
"LLVM_TARGETS_TO_BUILD",
get_llvm_targets_to_build(spec)))
cmake_args.append(define("LLVM_TARGETS_TO_BUILD", get_llvm_targets_to_build(spec)))
cmake_args.append(from_variant("LIBOMP_TSAN_SUPPORT", "omp_tsan"))
if self.compiler.name == "gcc":
compiler = Executable(self.compiler.cc)
gcc_output = compiler('-print-search-dirs', output=str, error=str)
gcc_output = compiler("-print-search-dirs", output=str, error=str)
for line in gcc_output.splitlines():
if line.startswith("install:"):
@@ -665,7 +686,7 @@ class Llvm(CMakePackage, CudaPackage):
cmake_args.append(define("GCC_INSTALL_PREFIX", gcc_prefix))
if self.spec.satisfies("~code_signing platform=darwin"):
cmake_args.append(define('LLDB_USE_SYSTEM_DEBUGSERVER', True))
cmake_args.append(define("LLDB_USE_SYSTEM_DEBUGSERVER", True))
# Semicolon seperated list of projects to enable
cmake_args.append(define("LLVM_ENABLE_PROJECTS", projects))
@@ -689,20 +710,24 @@ class Llvm(CMakePackage, CudaPackage):
# rebuild libomptarget to get bytecode runtime library files
with working_dir(ompdir, create=True):
cmake_args = [
'-G', 'Ninja',
define('CMAKE_BUILD_TYPE', spec.variants['build_type'].value),
"-G",
"Ninja",
define("CMAKE_BUILD_TYPE", spec.variants["build_type"].value),
define("CMAKE_C_COMPILER", spec.prefix.bin + "/clang"),
define("CMAKE_CXX_COMPILER", spec.prefix.bin + "/clang++"),
define("CMAKE_INSTALL_PREFIX", spec.prefix),
define('CMAKE_PREFIX_PATH', prefix_paths)
define("CMAKE_PREFIX_PATH", prefix_paths),
]
cmake_args.extend(self.cmake_args())
cmake_args.extend([
define("LIBOMPTARGET_NVPTX_ENABLE_BCLIB", True),
define("LIBOMPTARGET_DEP_LIBELF_INCLUDE_DIR",
spec["libelf"].prefix.include),
self.stage.source_path + "/openmp",
])
cmake_args.extend(
[
define("LIBOMPTARGET_NVPTX_ENABLE_BCLIB", True),
define(
"LIBOMPTARGET_DEP_LIBELF_INCLUDE_DIR", spec["libelf"].prefix.include
),
self.stage.source_path + "/openmp",
]
)
cmake(*cmake_args)
ninja()
@@ -717,22 +742,22 @@ class Llvm(CMakePackage, CudaPackage):
install_tree("bin", join_path(self.prefix, "libexec", "llvm"))
def llvm_config(self, *args, **kwargs):
lc = Executable(self.prefix.bin.join('llvm-config'))
if not kwargs.get('output'):
kwargs['output'] = str
lc = Executable(self.prefix.bin.join("llvm-config"))
if not kwargs.get("output"):
kwargs["output"] = str
ret = lc(*args, **kwargs)
if kwargs.get('result') == "list":
if kwargs.get("result") == "list":
return ret.split()
else:
return ret
def get_llvm_targets_to_build(spec):
targets = spec.variants['targets'].value
targets = spec.variants["targets"].value
# Build everything?
if 'all' in targets:
return 'all'
if "all" in targets:
return "all"
# Convert targets variant values to CMake LLVM_TARGETS_TO_BUILD array.
spack_to_cmake = {
@@ -753,10 +778,10 @@ def get_llvm_targets_to_build(spec):
"systemz": "SystemZ",
"webassembly": "WebAssembly",
"x86": "X86",
"xcore": "XCore"
"xcore": "XCore",
}
if 'none' in targets:
if "none" in targets:
llvm_targets = set()
else:
llvm_targets = set(spack_to_cmake[target] for target in targets)

View File

@@ -22,127 +22,140 @@ class PyTorch(PythonPackage, CudaPackage):
with strong GPU acceleration."""
homepage = "https://pytorch.org/"
git = "https://github.com/pytorch/pytorch.git"
git = "https://github.com/pytorch/pytorch.git"
maintainers = ['adamjstewart']
maintainers("adamjstewart")
# Exact set of modules is version- and variant-specific, just attempt to import the
# core libraries to ensure that the package was successfully installed.
import_modules = ['torch', 'torch.autograd', 'torch.nn', 'torch.utils']
import_modules = ["torch", "torch.autograd", "torch.nn", "torch.utils"]
version('master', branch='master', submodules=True)
version('1.10.1', tag='v1.10.1', submodules=True)
version('1.10.0', tag='v1.10.0', submodules=True)
version('1.9.1', tag='v1.9.1', submodules=True)
version('1.9.0', tag='v1.9.0', submodules=True)
version('1.8.2', tag='v1.8.2', submodules=True)
version('1.8.1', tag='v1.8.1', submodules=True)
version('1.8.0', tag='v1.8.0', submodules=True)
version('1.7.1', tag='v1.7.1', submodules=True)
version('1.7.0', tag='v1.7.0', submodules=True)
version('1.6.0', tag='v1.6.0', submodules=True)
version('1.5.1', tag='v1.5.1', submodules=True)
version('1.5.0', tag='v1.5.0', submodules=True)
version('1.4.1', tag='v1.4.1', submodules=True)
version('1.4.0', tag='v1.4.0', submodules=True, deprecated=True,
submodules_delete=['third_party/fbgemm'])
version('1.3.1', tag='v1.3.1', submodules=True)
version('1.3.0', tag='v1.3.0', submodules=True)
version('1.2.0', tag='v1.2.0', submodules=True)
version('1.1.0', tag='v1.1.0', submodules=True)
version('1.0.1', tag='v1.0.1', submodules=True)
version('1.0.0', tag='v1.0.0', submodules=True)
version('0.4.1', tag='v0.4.1', submodules=True, deprecated=True,
submodules_delete=['third_party/nervanagpu'])
version('0.4.0', tag='v0.4.0', submodules=True, deprecated=True)
version('0.3.1', tag='v0.3.1', submodules=True, deprecated=True)
version("master", branch="master", submodules=True)
version("1.10.1", tag="v1.10.1", submodules=True)
version("1.10.0", tag="v1.10.0", submodules=True)
version("1.9.1", tag="v1.9.1", submodules=True)
version("1.9.0", tag="v1.9.0", submodules=True)
version("1.8.2", tag="v1.8.2", submodules=True)
version("1.8.1", tag="v1.8.1", submodules=True)
version("1.8.0", tag="v1.8.0", submodules=True)
version("1.7.1", tag="v1.7.1", submodules=True)
version("1.7.0", tag="v1.7.0", submodules=True)
version("1.6.0", tag="v1.6.0", submodules=True)
version("1.5.1", tag="v1.5.1", submodules=True)
version("1.5.0", tag="v1.5.0", submodules=True)
version("1.4.1", tag="v1.4.1", submodules=True)
version(
"1.4.0",
tag="v1.4.0",
submodules=True,
deprecated=True,
submodules_delete=["third_party/fbgemm"],
)
version("1.3.1", tag="v1.3.1", submodules=True)
version("1.3.0", tag="v1.3.0", submodules=True)
version("1.2.0", tag="v1.2.0", submodules=True)
version("1.1.0", tag="v1.1.0", submodules=True)
version("1.0.1", tag="v1.0.1", submodules=True)
version("1.0.0", tag="v1.0.0", submodules=True)
version(
"0.4.1",
tag="v0.4.1",
submodules=True,
deprecated=True,
submodules_delete=["third_party/nervanagpu"],
)
version("0.4.0", tag="v0.4.0", submodules=True, deprecated=True)
version("0.3.1", tag="v0.3.1", submodules=True, deprecated=True)
is_darwin = sys.platform == 'darwin'
is_darwin = sys.platform == "darwin"
# All options are defined in CMakeLists.txt.
# Some are listed in setup.py, but not all.
variant('caffe2', default=True, description='Build Caffe2')
variant('test', default=False, description='Build C++ test binaries')
variant('cuda', default=not is_darwin, description='Use CUDA')
variant('rocm', default=False, description='Use ROCm')
variant('cudnn', default=not is_darwin, description='Use cuDNN')
variant('fbgemm', default=True, description='Use FBGEMM (quantized 8-bit server operators)')
variant('kineto', default=True, description='Use Kineto profiling library')
variant('magma', default=not is_darwin, description='Use MAGMA')
variant('metal', default=is_darwin, description='Use Metal for Caffe2 iOS build')
variant('nccl', default=not is_darwin, description='Use NCCL')
variant('nnpack', default=True, description='Use NNPACK')
variant('numa', default=not is_darwin, description='Use NUMA')
variant('numpy', default=True, description='Use NumPy')
variant('openmp', default=True, description='Use OpenMP for parallel code')
variant('qnnpack', default=True, description='Use QNNPACK (quantized 8-bit operators)')
variant('valgrind', default=not is_darwin, description='Use Valgrind')
variant('xnnpack', default=True, description='Use XNNPACK')
variant('mkldnn', default=True, description='Use MKLDNN')
variant('distributed', default=not is_darwin, description='Use distributed')
variant('mpi', default=not is_darwin, description='Use MPI for Caffe2')
variant('gloo', default=not is_darwin, description='Use Gloo')
variant('tensorpipe', default=not is_darwin, description='Use TensorPipe')
variant('onnx_ml', default=True, description='Enable traditional ONNX ML API')
variant('breakpad', default=True, description='Enable breakpad crash dump library')
variant("caffe2", default=True, description="Build Caffe2")
variant("test", default=False, description="Build C++ test binaries")
variant("cuda", default=not is_darwin, description="Use CUDA")
variant("rocm", default=False, description="Use ROCm")
variant("cudnn", default=not is_darwin, description="Use cuDNN")
variant("fbgemm", default=True, description="Use FBGEMM (quantized 8-bit server operators)")
variant("kineto", default=True, description="Use Kineto profiling library")
variant("magma", default=not is_darwin, description="Use MAGMA")
variant("metal", default=is_darwin, description="Use Metal for Caffe2 iOS build")
variant("nccl", default=not is_darwin, description="Use NCCL")
variant("nnpack", default=True, description="Use NNPACK")
variant("numa", default=not is_darwin, description="Use NUMA")
variant("numpy", default=True, description="Use NumPy")
variant("openmp", default=True, description="Use OpenMP for parallel code")
variant("qnnpack", default=True, description="Use QNNPACK (quantized 8-bit operators)")
variant("valgrind", default=not is_darwin, description="Use Valgrind")
variant("xnnpack", default=True, description="Use XNNPACK")
variant("mkldnn", default=True, description="Use MKLDNN")
variant("distributed", default=not is_darwin, description="Use distributed")
variant("mpi", default=not is_darwin, description="Use MPI for Caffe2")
variant("gloo", default=not is_darwin, description="Use Gloo")
variant("tensorpipe", default=not is_darwin, description="Use TensorPipe")
variant("onnx_ml", default=True, description="Enable traditional ONNX ML API")
variant("breakpad", default=True, description="Enable breakpad crash dump library")
conflicts('+cuda', when='+rocm')
conflicts('+cudnn', when='~cuda')
conflicts('+magma', when='~cuda')
conflicts('+nccl', when='~cuda~rocm')
conflicts('+nccl', when='platform=darwin')
conflicts('+numa', when='platform=darwin', msg='Only available on Linux')
conflicts('+valgrind', when='platform=darwin', msg='Only available on Linux')
conflicts('+mpi', when='~distributed')
conflicts('+gloo', when='~distributed')
conflicts('+tensorpipe', when='~distributed')
conflicts('+kineto', when='@:1.7')
conflicts('+valgrind', when='@:1.7')
conflicts('~caffe2', when='@0.4.0:1.6') # no way to disable caffe2?
conflicts('+caffe2', when='@:0.3.1') # caffe2 did not yet exist?
conflicts('+tensorpipe', when='@:1.5')
conflicts('+xnnpack', when='@:1.4')
conflicts('~onnx_ml', when='@:1.4') # no way to disable ONNX?
conflicts('+rocm', when='@:0.4')
conflicts('+cudnn', when='@:0.4')
conflicts('+fbgemm', when='@:0.4,1.4.0')
conflicts('+qnnpack', when='@:0.4')
conflicts('+mkldnn', when='@:0.4')
conflicts('+breakpad', when='@:1.9') # Option appeared in 1.10.0
conflicts('+breakpad', when='target=ppc64:', msg='Unsupported')
conflicts('+breakpad', when='target=ppc64le:', msg='Unsupported')
conflicts("+cuda", when="+rocm")
conflicts("+cudnn", when="~cuda")
conflicts("+magma", when="~cuda")
conflicts("+nccl", when="~cuda~rocm")
conflicts("+nccl", when="platform=darwin")
conflicts("+numa", when="platform=darwin", msg="Only available on Linux")
conflicts("+valgrind", when="platform=darwin", msg="Only available on Linux")
conflicts("+mpi", when="~distributed")
conflicts("+gloo", when="~distributed")
conflicts("+tensorpipe", when="~distributed")
conflicts("+kineto", when="@:1.7")
conflicts("+valgrind", when="@:1.7")
conflicts("~caffe2", when="@0.4.0:1.6") # no way to disable caffe2?
conflicts("+caffe2", when="@:0.3.1") # caffe2 did not yet exist?
conflicts("+tensorpipe", when="@:1.5")
conflicts("+xnnpack", when="@:1.4")
conflicts("~onnx_ml", when="@:1.4") # no way to disable ONNX?
conflicts("+rocm", when="@:0.4")
conflicts("+cudnn", when="@:0.4")
conflicts("+fbgemm", when="@:0.4,1.4.0")
conflicts("+qnnpack", when="@:0.4")
conflicts("+mkldnn", when="@:0.4")
conflicts("+breakpad", when="@:1.9") # Option appeared in 1.10.0
conflicts("+breakpad", when="target=ppc64:", msg="Unsupported")
conflicts("+breakpad", when="target=ppc64le:", msg="Unsupported")
conflicts('cuda_arch=none', when='+cuda',
msg='Must specify CUDA compute capabilities of your GPU, see '
'https://developer.nvidia.com/cuda-gpus')
conflicts(
"cuda_arch=none",
when="+cuda",
msg="Must specify CUDA compute capabilities of your GPU, see "
"https://developer.nvidia.com/cuda-gpus",
)
# Required dependencies
depends_on('cmake@3.5:', type='build')
depends_on("cmake@3.5:", type="build")
# Use Ninja generator to speed up build times, automatically used if found
depends_on('ninja@1.5:', when='@1.1.0:', type='build')
depends_on("ninja@1.5:", when="@1.1.0:", type="build")
# See python_min_version in setup.py
depends_on('python@3.6.2:', when='@1.7.1:', type=('build', 'link', 'run'))
depends_on('python@3.6.1:', when='@1.6.0:1.7.0', type=('build', 'link', 'run'))
depends_on('python@3.5:', when='@1.5.0:1.5', type=('build', 'link', 'run'))
depends_on('python@2.7:2.8,3.5:', when='@1.4.0:1.4', type=('build', 'link', 'run'))
depends_on('python@2.7:2.8,3.5:3.7', when='@:1.3', type=('build', 'link', 'run'))
depends_on('py-setuptools', type=('build', 'run'))
depends_on('py-future', when='@1.5:', type=('build', 'run'))
depends_on('py-future', when='@1.1: ^python@:2', type=('build', 'run'))
depends_on('py-pyyaml', type=('build', 'run'))
depends_on('py-typing', when='@0.4: ^python@:3.4', type=('build', 'run'))
depends_on('py-typing-extensions', when='@1.7:', type=('build', 'run'))
depends_on('py-pybind11@2.6.2', when='@1.8.0:', type=('build', 'link', 'run'))
depends_on('py-pybind11@2.3.0', when='@1.1.0:1.7', type=('build', 'link', 'run'))
depends_on('py-pybind11@2.2.4', when='@1.0.0:1.0', type=('build', 'link', 'run'))
depends_on('py-pybind11@2.2.2', when='@0.4.0:0.4', type=('build', 'link', 'run'))
depends_on('py-dataclasses', when='@1.7: ^python@3.6.0:3.6', type=('build', 'run'))
depends_on('py-tqdm', type='run')
depends_on('py-protobuf', when='@0.4:', type=('build', 'run'))
depends_on('protobuf', when='@0.4:')
depends_on('blas')
depends_on('lapack')
depends_on('eigen', when='@0.4:')
depends_on("python@3.6.2:", when="@1.7.1:", type=("build", "link", "run"))
depends_on("python@3.6.1:", when="@1.6.0:1.7.0", type=("build", "link", "run"))
depends_on("python@3.5:", when="@1.5.0:1.5", type=("build", "link", "run"))
depends_on("python@2.7:2.8,3.5:", when="@1.4.0:1.4", type=("build", "link", "run"))
depends_on("python@2.7:2.8,3.5:3.7", when="@:1.3", type=("build", "link", "run"))
depends_on("py-setuptools", type=("build", "run"))
depends_on("py-future", when="@1.5:", type=("build", "run"))
depends_on("py-future", when="@1.1: ^python@:2", type=("build", "run"))
depends_on("py-pyyaml", type=("build", "run"))
depends_on("py-typing", when="@0.4: ^python@:3.4", type=("build", "run"))
depends_on("py-typing-extensions", when="@1.7:", type=("build", "run"))
depends_on("py-pybind11@2.6.2", when="@1.8.0:", type=("build", "link", "run"))
depends_on("py-pybind11@2.3.0", when="@1.1.0:1.7", type=("build", "link", "run"))
depends_on("py-pybind11@2.2.4", when="@1.0.0:1.0", type=("build", "link", "run"))
depends_on("py-pybind11@2.2.2", when="@0.4.0:0.4", type=("build", "link", "run"))
depends_on("py-dataclasses", when="@1.7: ^python@3.6.0:3.6", type=("build", "run"))
depends_on("py-tqdm", type="run")
depends_on("py-protobuf", when="@0.4:", type=("build", "run"))
depends_on("protobuf", when="@0.4:")
depends_on("blas")
depends_on("lapack")
depends_on("eigen", when="@0.4:")
# https://github.com/pytorch/pytorch/issues/60329
# depends_on('cpuinfo@2020-12-17', when='@1.8.0:')
# depends_on('cpuinfo@2020-06-11', when='@1.6.0:1.7')
@@ -152,30 +165,30 @@ class PyTorch(PythonPackage, CudaPackage):
# depends_on('sleef@3.4.0_2019-07-30', when='@1.6.0:1.7')
# https://github.com/Maratyszcza/FP16/issues/18
# depends_on('fp16@2020-05-14', when='@1.6.0:')
depends_on('pthreadpool@2021-04-13', when='@1.9.0:')
depends_on('pthreadpool@2020-10-05', when='@1.8.0:1.8')
depends_on('pthreadpool@2020-06-15', when='@1.6.0:1.7')
depends_on('psimd@2020-05-17', when='@1.6.0:')
depends_on('fxdiv@2020-04-17', when='@1.6.0:')
depends_on('benchmark', when='@1.6:+test')
depends_on("pthreadpool@2021-04-13", when="@1.9.0:")
depends_on("pthreadpool@2020-10-05", when="@1.8.0:1.8")
depends_on("pthreadpool@2020-06-15", when="@1.6.0:1.7")
depends_on("psimd@2020-05-17", when="@1.6.0:")
depends_on("fxdiv@2020-04-17", when="@1.6.0:")
depends_on("benchmark", when="@1.6:+test")
# Optional dependencies
depends_on('cuda@7.5:', when='+cuda', type=('build', 'link', 'run'))
depends_on('cuda@9:', when='@1.1:+cuda', type=('build', 'link', 'run'))
depends_on('cuda@9.2:', when='@1.6:+cuda', type=('build', 'link', 'run'))
depends_on('cudnn@6.0:7', when='@:1.0+cudnn')
depends_on('cudnn@7.0:7', when='@1.1.0:1.5+cudnn')
depends_on('cudnn@7.0:', when='@1.6.0:+cudnn')
depends_on('magma', when='+magma')
depends_on('nccl', when='+nccl')
depends_on('numactl', when='+numa')
depends_on('py-numpy', when='+numpy', type=('build', 'run'))
depends_on('llvm-openmp', when='%apple-clang +openmp')
depends_on('valgrind', when='+valgrind')
depends_on("cuda@7.5:", when="+cuda", type=("build", "link", "run"))
depends_on("cuda@9:", when="@1.1:+cuda", type=("build", "link", "run"))
depends_on("cuda@9.2:", when="@1.6:+cuda", type=("build", "link", "run"))
depends_on("cudnn@6.0:7", when="@:1.0+cudnn")
depends_on("cudnn@7.0:7", when="@1.1.0:1.5+cudnn")
depends_on("cudnn@7.0:", when="@1.6.0:+cudnn")
depends_on("magma", when="+magma")
depends_on("nccl", when="+nccl")
depends_on("numactl", when="+numa")
depends_on("py-numpy", when="+numpy", type=("build", "run"))
depends_on("llvm-openmp", when="%apple-clang +openmp")
depends_on("valgrind", when="+valgrind")
# https://github.com/pytorch/pytorch/issues/60332
# depends_on('xnnpack@2021-02-22', when='@1.8.0:+xnnpack')
# depends_on('xnnpack@2020-03-23', when='@1.6.0:1.7+xnnpack')
depends_on('mpi', when='+mpi')
depends_on("mpi", when="+mpi")
# https://github.com/pytorch/pytorch/issues/60270
# depends_on('gloo@2021-05-04', when='@1.9.0:+gloo')
# depends_on('gloo@2020-09-18', when='@1.7.0:1.8+gloo')
@@ -183,31 +196,35 @@ class PyTorch(PythonPackage, CudaPackage):
# https://github.com/pytorch/pytorch/issues/60331
# depends_on('onnx@1.8.0_2020-11-03', when='@1.8.0:+onnx_ml')
# depends_on('onnx@1.7.0_2020-05-31', when='@1.6.0:1.7+onnx_ml')
depends_on('mkl', when='+mkldnn')
depends_on("mkl", when="+mkldnn")
# Test dependencies
depends_on('py-hypothesis', type='test')
depends_on('py-six', type='test')
depends_on('py-psutil', type='test')
depends_on("py-hypothesis", type="test")
depends_on("py-six", type="test")
depends_on("py-psutil", type="test")
# Fix BLAS being overridden by MKL
# https://github.com/pytorch/pytorch/issues/60328
patch('https://patch-diff.githubusercontent.com/raw/pytorch/pytorch/pull/59220.patch',
sha256='e37afffe45cf7594c22050109942370e49983ad772d12ebccf508377dc9dcfc9',
when='@1.2.0:')
patch(
"https://patch-diff.githubusercontent.com/raw/pytorch/pytorch/pull/59220.patch",
sha256="e37afffe45cf7594c22050109942370e49983ad772d12ebccf508377dc9dcfc9",
when="@1.2.0:",
)
# Fixes build on older systems with glibc <2.12
patch('https://patch-diff.githubusercontent.com/raw/pytorch/pytorch/pull/55063.patch',
sha256='e17eaa42f5d7c18bf0d7c37d7b0910127a01ad53fdce3e226a92893356a70395',
when='@1.1.0:1.8.1')
patch(
"https://patch-diff.githubusercontent.com/raw/pytorch/pytorch/pull/55063.patch",
sha256="e17eaa42f5d7c18bf0d7c37d7b0910127a01ad53fdce3e226a92893356a70395",
when="@1.1.0:1.8.1",
)
# Fixes CMake configuration error when XNNPACK is disabled
# https://github.com/pytorch/pytorch/pull/35607
# https://github.com/pytorch/pytorch/pull/37865
patch('xnnpack.patch', when='@1.5.0:1.5')
patch("xnnpack.patch", when="@1.5.0:1.5")
# Fixes build error when ROCm is enabled for pytorch-1.5 release
patch('rocm.patch', when='@1.5.0:1.5+rocm')
patch("rocm.patch", when="@1.5.0:1.5+rocm")
# Fixes fatal error: sleef.h: No such file or directory
# https://github.com/pytorch/pytorch/pull/35359
@@ -216,47 +233,56 @@ class PyTorch(PythonPackage, CudaPackage):
# Fixes compilation with Clang 9.0.0 and Apple Clang 11.0.3
# https://github.com/pytorch/pytorch/pull/37086
patch('https://github.com/pytorch/pytorch/commit/e921cd222a8fbeabf5a3e74e83e0d8dfb01aa8b5.patch',
sha256='17561b16cd2db22f10c0fe1fdcb428aecb0ac3964ba022a41343a6bb8cba7049',
when='@1.1:1.5')
patch(
"https://github.com/pytorch/pytorch/commit/e921cd222a8fbeabf5a3e74e83e0d8dfb01aa8b5.patch",
sha256="17561b16cd2db22f10c0fe1fdcb428aecb0ac3964ba022a41343a6bb8cba7049",
when="@1.1:1.5",
)
# Removes duplicate definition of getCusparseErrorString
# https://github.com/pytorch/pytorch/issues/32083
patch('cusparseGetErrorString.patch', when='@0.4.1:1.0^cuda@10.1.243:')
patch("cusparseGetErrorString.patch", when="@0.4.1:1.0^cuda@10.1.243:")
# Fixes 'FindOpenMP.cmake'
# to detect openmp settings used by Fujitsu compiler.
patch('detect_omp_of_fujitsu_compiler.patch', when='%fj')
patch("detect_omp_of_fujitsu_compiler.patch", when="%fj")
# Fix compilation of +distributed~tensorpipe
# https://github.com/pytorch/pytorch/issues/68002
patch('https://github.com/pytorch/pytorch/commit/c075f0f633fa0136e68f0a455b5b74d7b500865c.patch',
sha256='e69e41b5c171bfb00d1b5d4ee55dd5e4c8975483230274af4ab461acd37e40b8', when='@1.10.0+distributed~tensorpipe')
patch(
"https://github.com/pytorch/pytorch/commit/c075f0f633fa0136e68f0a455b5b74d7b500865c.patch",
sha256="e69e41b5c171bfb00d1b5d4ee55dd5e4c8975483230274af4ab461acd37e40b8",
when="@1.10.0+distributed~tensorpipe",
)
# Both build and install run cmake/make/make install
# Only run once to speed up build times
phases = ['install']
phases = ["install"]
@property
def libs(self):
root = join_path(self.prefix, self.spec['python'].package.site_packages_dir,
'torch', 'lib')
return find_libraries('libtorch', root)
root = join_path(
self.prefix, self.spec["python"].package.site_packages_dir, "torch", "lib"
)
return find_libraries("libtorch", root)
@property
def headers(self):
root = join_path(self.prefix, self.spec['python'].package.site_packages_dir,
'torch', 'include')
root = join_path(
self.prefix, self.spec["python"].package.site_packages_dir, "torch", "include"
)
headers = find_all_headers(root)
headers.directories = [root]
return headers
@when('@1.5.0:')
@when("@1.5.0:")
def patch(self):
# https://github.com/pytorch/pytorch/issues/52208
filter_file('torch_global_deps PROPERTIES LINKER_LANGUAGE C',
'torch_global_deps PROPERTIES LINKER_LANGUAGE CXX',
'caffe2/CMakeLists.txt')
filter_file(
"torch_global_deps PROPERTIES LINKER_LANGUAGE C",
"torch_global_deps PROPERTIES LINKER_LANGUAGE CXX",
"caffe2/CMakeLists.txt",
)
def setup_build_environment(self, env):
"""Set environment variables used to control the build.
@@ -269,7 +295,8 @@ class PyTorch(PythonPackage, CudaPackage):
most flags defined in ``CMakeLists.txt`` can be specified as
environment variables.
"""
def enable_or_disable(variant, keyword='USE', var=None, newer=False):
def enable_or_disable(variant, keyword="USE", var=None, newer=False):
"""Set environment variable to enable or disable support for a
particular variant.
@@ -284,137 +311,135 @@ class PyTorch(PythonPackage, CudaPackage):
# Version 1.1.0 switched from NO_* to USE_* or BUILD_*
# But some newer variants have always used USE_* or BUILD_*
if self.spec.satisfies('@1.1:') or newer:
if '+' + variant in self.spec:
env.set(keyword + '_' + var, 'ON')
if self.spec.satisfies("@1.1:") or newer:
if "+" + variant in self.spec:
env.set(keyword + "_" + var, "ON")
else:
env.set(keyword + '_' + var, 'OFF')
env.set(keyword + "_" + var, "OFF")
else:
if '+' + variant in self.spec:
env.unset('NO_' + var)
if "+" + variant in self.spec:
env.unset("NO_" + var)
else:
env.set('NO_' + var, 'ON')
env.set("NO_" + var, "ON")
# Build in parallel to speed up build times
env.set('MAX_JOBS', make_jobs)
env.set("MAX_JOBS", make_jobs)
# Spack logs have trouble handling colored output
env.set('COLORIZE_OUTPUT', 'OFF')
env.set("COLORIZE_OUTPUT", "OFF")
if self.spec.satisfies('@0.4:'):
enable_or_disable('test', keyword='BUILD')
if self.spec.satisfies("@0.4:"):
enable_or_disable("test", keyword="BUILD")
if self.spec.satisfies('@1.7:'):
enable_or_disable('caffe2', keyword='BUILD')
if self.spec.satisfies("@1.7:"):
enable_or_disable("caffe2", keyword="BUILD")
enable_or_disable('cuda')
if '+cuda' in self.spec:
enable_or_disable("cuda")
if "+cuda" in self.spec:
# cmake/public/cuda.cmake
# cmake/Modules_CUDA_fix/upstream/FindCUDA.cmake
env.unset('CUDA_ROOT')
torch_cuda_arch = ';'.join('{0:.1f}'.format(float(i) / 10.0) for i
in
self.spec.variants['cuda_arch'].value)
env.set('TORCH_CUDA_ARCH_LIST', torch_cuda_arch)
env.unset("CUDA_ROOT")
torch_cuda_arch = ";".join(
"{0:.1f}".format(float(i) / 10.0) for i in self.spec.variants["cuda_arch"].value
)
env.set("TORCH_CUDA_ARCH_LIST", torch_cuda_arch)
enable_or_disable('rocm')
enable_or_disable("rocm")
enable_or_disable('cudnn')
if '+cudnn' in self.spec:
enable_or_disable("cudnn")
if "+cudnn" in self.spec:
# cmake/Modules_CUDA_fix/FindCUDNN.cmake
env.set('CUDNN_INCLUDE_DIR', self.spec['cudnn'].prefix.include)
env.set('CUDNN_LIBRARY', self.spec['cudnn'].libs[0])
env.set("CUDNN_INCLUDE_DIR", self.spec["cudnn"].prefix.include)
env.set("CUDNN_LIBRARY", self.spec["cudnn"].libs[0])
enable_or_disable('fbgemm')
if self.spec.satisfies('@1.8:'):
enable_or_disable('kineto')
enable_or_disable('magma')
enable_or_disable('metal')
if self.spec.satisfies('@1.10:'):
enable_or_disable('breakpad')
enable_or_disable("fbgemm")
if self.spec.satisfies("@1.8:"):
enable_or_disable("kineto")
enable_or_disable("magma")
enable_or_disable("metal")
if self.spec.satisfies("@1.10:"):
enable_or_disable("breakpad")
enable_or_disable('nccl')
if '+nccl' in self.spec:
env.set('NCCL_LIB_DIR', self.spec['nccl'].libs.directories[0])
env.set('NCCL_INCLUDE_DIR', self.spec['nccl'].prefix.include)
enable_or_disable("nccl")
if "+nccl" in self.spec:
env.set("NCCL_LIB_DIR", self.spec["nccl"].libs.directories[0])
env.set("NCCL_INCLUDE_DIR", self.spec["nccl"].prefix.include)
# cmake/External/nnpack.cmake
enable_or_disable('nnpack')
enable_or_disable("nnpack")
enable_or_disable('numa')
if '+numa' in self.spec:
enable_or_disable("numa")
if "+numa" in self.spec:
# cmake/Modules/FindNuma.cmake
env.set('NUMA_ROOT_DIR', self.spec['numactl'].prefix)
env.set("NUMA_ROOT_DIR", self.spec["numactl"].prefix)
# cmake/Modules/FindNumPy.cmake
enable_or_disable('numpy')
enable_or_disable("numpy")
# cmake/Modules/FindOpenMP.cmake
enable_or_disable('openmp', newer=True)
enable_or_disable('qnnpack')
if self.spec.satisfies('@1.3:'):
enable_or_disable('qnnpack', var='PYTORCH_QNNPACK')
if self.spec.satisfies('@1.8:'):
enable_or_disable('valgrind')
if self.spec.satisfies('@1.5:'):
enable_or_disable('xnnpack')
enable_or_disable('mkldnn')
enable_or_disable('distributed')
enable_or_disable('mpi')
enable_or_disable("openmp", newer=True)
enable_or_disable("qnnpack")
if self.spec.satisfies("@1.3:"):
enable_or_disable("qnnpack", var="PYTORCH_QNNPACK")
if self.spec.satisfies("@1.8:"):
enable_or_disable("valgrind")
if self.spec.satisfies("@1.5:"):
enable_or_disable("xnnpack")
enable_or_disable("mkldnn")
enable_or_disable("distributed")
enable_or_disable("mpi")
# cmake/Modules/FindGloo.cmake
enable_or_disable('gloo', newer=True)
if self.spec.satisfies('@1.6:'):
enable_or_disable('tensorpipe')
enable_or_disable("gloo", newer=True)
if self.spec.satisfies("@1.6:"):
enable_or_disable("tensorpipe")
if '+onnx_ml' in self.spec:
env.set('ONNX_ML', 'ON')
if "+onnx_ml" in self.spec:
env.set("ONNX_ML", "ON")
else:
env.set('ONNX_ML', 'OFF')
env.set("ONNX_ML", "OFF")
if not self.spec.satisfies('@master'):
env.set('PYTORCH_BUILD_VERSION', self.version)
env.set('PYTORCH_BUILD_NUMBER', 0)
if not self.spec.satisfies("@master"):
env.set("PYTORCH_BUILD_VERSION", self.version)
env.set("PYTORCH_BUILD_NUMBER", 0)
# BLAS to be used by Caffe2
# Options defined in cmake/Dependencies.cmake and cmake/Modules/FindBLAS.cmake
if self.spec['blas'].name == 'atlas':
env.set('BLAS', 'ATLAS')
env.set('WITH_BLAS', 'atlas')
elif self.spec['blas'].name in ['blis', 'amdblis']:
env.set('BLAS', 'BLIS')
env.set('WITH_BLAS', 'blis')
elif self.spec['blas'].name == 'eigen':
env.set('BLAS', 'Eigen')
elif self.spec['lapack'].name in ['libflame', 'amdlibflame']:
env.set('BLAS', 'FLAME')
env.set('WITH_BLAS', 'FLAME')
elif self.spec['blas'].name in [
'intel-mkl', 'intel-parallel-studio', 'intel-oneapi-mkl']:
env.set('BLAS', 'MKL')
env.set('WITH_BLAS', 'mkl')
elif self.spec['blas'].name == 'openblas':
env.set('BLAS', 'OpenBLAS')
env.set('WITH_BLAS', 'open')
elif self.spec['blas'].name == 'veclibfort':
env.set('BLAS', 'vecLib')
env.set('WITH_BLAS', 'veclib')
if self.spec["blas"].name == "atlas":
env.set("BLAS", "ATLAS")
env.set("WITH_BLAS", "atlas")
elif self.spec["blas"].name in ["blis", "amdblis"]:
env.set("BLAS", "BLIS")
env.set("WITH_BLAS", "blis")
elif self.spec["blas"].name == "eigen":
env.set("BLAS", "Eigen")
elif self.spec["lapack"].name in ["libflame", "amdlibflame"]:
env.set("BLAS", "FLAME")
env.set("WITH_BLAS", "FLAME")
elif self.spec["blas"].name in ["intel-mkl", "intel-parallel-studio", "intel-oneapi-mkl"]:
env.set("BLAS", "MKL")
env.set("WITH_BLAS", "mkl")
elif self.spec["blas"].name == "openblas":
env.set("BLAS", "OpenBLAS")
env.set("WITH_BLAS", "open")
elif self.spec["blas"].name == "veclibfort":
env.set("BLAS", "vecLib")
env.set("WITH_BLAS", "veclib")
else:
env.set('BLAS', 'Generic')
env.set('WITH_BLAS', 'generic')
env.set("BLAS", "Generic")
env.set("WITH_BLAS", "generic")
# Don't use vendored third-party libraries when possible
env.set('BUILD_CUSTOM_PROTOBUF', 'OFF')
env.set('USE_SYSTEM_NCCL', 'ON')
env.set('USE_SYSTEM_EIGEN_INSTALL', 'ON')
if self.spec.satisfies('@0.4:'):
env.set('pybind11_DIR', self.spec['py-pybind11'].prefix)
env.set('pybind11_INCLUDE_DIR',
self.spec['py-pybind11'].prefix.include)
if self.spec.satisfies('@1.10:'):
env.set('USE_SYSTEM_PYBIND11', 'ON')
env.set("BUILD_CUSTOM_PROTOBUF", "OFF")
env.set("USE_SYSTEM_NCCL", "ON")
env.set("USE_SYSTEM_EIGEN_INSTALL", "ON")
if self.spec.satisfies("@0.4:"):
env.set("pybind11_DIR", self.spec["py-pybind11"].prefix)
env.set("pybind11_INCLUDE_DIR", self.spec["py-pybind11"].prefix.include)
if self.spec.satisfies("@1.10:"):
env.set("USE_SYSTEM_PYBIND11", "ON")
# https://github.com/pytorch/pytorch/issues/60334
# if self.spec.satisfies('@1.8:'):
# env.set('USE_SYSTEM_SLEEF', 'ON')
if self.spec.satisfies('@1.6:'):
if self.spec.satisfies("@1.6:"):
# env.set('USE_SYSTEM_LIBS', 'ON')
# https://github.com/pytorch/pytorch/issues/60329
# env.set('USE_SYSTEM_CPUINFO', 'ON')
@@ -422,27 +447,26 @@ class PyTorch(PythonPackage, CudaPackage):
# env.set('USE_SYSTEM_GLOO', 'ON')
# https://github.com/Maratyszcza/FP16/issues/18
# env.set('USE_SYSTEM_FP16', 'ON')
env.set('USE_SYSTEM_PTHREADPOOL', 'ON')
env.set('USE_SYSTEM_PSIMD', 'ON')
env.set('USE_SYSTEM_FXDIV', 'ON')
env.set('USE_SYSTEM_BENCHMARK', 'ON')
env.set("USE_SYSTEM_PTHREADPOOL", "ON")
env.set("USE_SYSTEM_PSIMD", "ON")
env.set("USE_SYSTEM_FXDIV", "ON")
env.set("USE_SYSTEM_BENCHMARK", "ON")
# https://github.com/pytorch/pytorch/issues/60331
# env.set('USE_SYSTEM_ONNX', 'ON')
# https://github.com/pytorch/pytorch/issues/60332
# env.set('USE_SYSTEM_XNNPACK', 'ON')
@run_before('install')
@run_before("install")
def build_amd(self):
if '+rocm' in self.spec:
python(os.path.join('tools', 'amd_build', 'build_amd.py'))
if "+rocm" in self.spec:
python(os.path.join("tools", "amd_build", "build_amd.py"))
@run_after('install')
@run_after("install")
@on_package_attributes(run_tests=True)
def install_test(self):
with working_dir('test'):
python('run_test.py')
with working_dir("test"):
python("run_test.py")
# Tests need to be re-added since `phases` was overridden
run_after('install')(
PythonPackage._run_default_install_time_test_callbacks)
run_after('install')(PythonPackage.sanity_check_prefix)
run_after("install")(PythonPackage._run_default_install_time_test_callbacks)
run_after("install")(PythonPackage.sanity_check_prefix)

File diff suppressed because it is too large Load Diff

View File

@@ -1399,17 +1399,24 @@ def test_print_install_test_log_skipped(install_mockery, mock_packages, capfd, r
assert out == ""
def test_print_install_test_log_missing(
def test_print_install_test_log_failures(
tmpdir, install_mockery, mock_packages, ensure_debug, capfd
):
"""Confirm expected error on attempt to print missing test log file."""
"""Confirm expected outputs when there are test failures."""
name = "trivial-install-test-package"
s = spack.spec.Spec(name).concretized()
pkg = s.package
# Missing test log is an error
pkg.run_tests = True
pkg.tester.test_log_file = str(tmpdir.join("test-log.txt"))
pkg.tester.add_failure(AssertionError("test"), "test-failure")
spack.installer.print_install_test_log(pkg)
err = capfd.readouterr()[1]
assert "no test log file" in err
# Having test log results in path being output
fs.touch(pkg.tester.test_log_file)
spack.installer.print_install_test_log(pkg)
out = capfd.readouterr()[0]
assert "See test results at" in out

View File

@@ -45,6 +45,18 @@ def provider(request):
@pytest.mark.usefixtures("config", "mock_packages")
class TestLmod(object):
@pytest.mark.regression("37788")
@pytest.mark.parametrize("modules_config", ["core_compilers", "core_compilers_at_equal"])
def test_layout_for_specs_compiled_with_core_compilers(
self, modules_config, module_configuration, factory
):
"""Tests that specs compiled with core compilers are in the 'Core' folder. Also tests that
we can use both ``compiler@version`` and ``compiler@=version`` to specify a core compiler.
"""
module_configuration(modules_config)
module, spec = factory("libelf%clang@12.0.0")
assert "Core" in module.layout.available_path_parts
def test_file_layout(self, compiler, provider, factory, module_configuration):
"""Tests the layout of files in the hierarchy is the one expected."""
module_configuration("complex_hierarchy")
@@ -61,7 +73,7 @@ def test_file_layout(self, compiler, provider, factory, module_configuration):
# is transformed to r"Core" if the compiler is listed among core
# compilers
# Check that specs listed as core_specs are transformed to "Core"
if compiler == "clang@=3.3" or spec_string == "mpich@3.0.1":
if compiler == "clang@=12.0.0" or spec_string == "mpich@3.0.1":
assert "Core" in layout.available_path_parts
else:
assert compiler.replace("@=", "/") in layout.available_path_parts

View File

@@ -62,7 +62,7 @@ def source_file(tmpdir, is_relocatable):
src = tmpdir.join("relocatable.c")
shutil.copy(template_src, str(src))
else:
template_dirs = [os.path.join(spack.paths.test_path, "data", "templates")]
template_dirs = (os.path.join(spack.paths.test_path, "data", "templates"),)
env = spack.tengine.make_environment(template_dirs)
template = env.get_template("non_relocatable.c")
text = template.render({"prefix": spack.store.layout.root})
@@ -173,14 +173,6 @@ def test_ensure_binary_is_relocatable(source_file, is_relocatable):
assert relocatable == is_relocatable
@pytest.mark.requires_executables("patchelf", "strings", "file")
@skip_unless_linux
def test_patchelf_is_relocatable():
patchelf = os.path.realpath(spack.relocate._patchelf())
assert llnl.util.filesystem.is_exe(patchelf)
spack.relocate.ensure_binary_is_relocatable(patchelf)
@skip_unless_linux
def test_ensure_binary_is_relocatable_errors(tmpdir):
# The file passed in as argument must exist...
@@ -241,30 +233,6 @@ def test_normalize_relative_paths(start_path, relative_paths, expected):
assert normalized == expected
def test_set_elf_rpaths(mock_patchelf):
# Try to relocate a mock version of patchelf and check
# the call made to patchelf itself
patchelf = mock_patchelf("echo $@")
rpaths = ["/usr/lib", "/usr/lib64", "/opt/local/lib"]
output = spack.relocate._set_elf_rpaths(patchelf, rpaths)
# Assert that the arguments of the call to patchelf are as expected
assert "--force-rpath" in output
assert "--set-rpath " + ":".join(rpaths) in output
assert patchelf in output
@skip_unless_linux
def test_set_elf_rpaths_warning(mock_patchelf):
# Mock a failing patchelf command and ensure it warns users
patchelf = mock_patchelf("exit 1")
rpaths = ["/usr/lib", "/usr/lib64", "/opt/local/lib"]
# To avoid using capfd in order to check if the warning was triggered
# here we just check that output is not set
output = spack.relocate._set_elf_rpaths(patchelf, rpaths)
assert output is None
@pytest.mark.requires_executables("patchelf", "strings", "file", "gcc")
@skip_unless_linux
def test_relocate_text_bin(binary_with_rpaths, prefix_like):

View File

@@ -660,6 +660,7 @@ def test_spec_formatting(self, default_mock_concretization):
("{architecture.os}", "", "os", lambda spec: spec.architecture),
("{architecture.target}", "", "target", lambda spec: spec.architecture),
("{prefix}", "", "prefix", lambda spec: spec),
("{external}", "", "external", lambda spec: spec), # test we print "False"
]
hash_segments = [

View File

@@ -71,7 +71,7 @@ def test_template_retrieval(self):
"""Tests the template retrieval mechanism hooked into config files"""
# Check the directories are correct
template_dirs = spack.config.get("config:template_dirs")
template_dirs = [canonicalize_path(x) for x in template_dirs]
template_dirs = tuple([canonicalize_path(x) for x in template_dirs])
assert len(template_dirs) == 3
env = tengine.make_environment(template_dirs)

View File

@@ -12,6 +12,7 @@
import spack.install_test
import spack.spec
from spack.install_test import TestStatus
from spack.util.executable import which
@@ -20,7 +21,7 @@ def _true(*args, **kwargs):
return True
def ensure_results(filename, expected):
def ensure_results(filename, expected, present=True):
assert os.path.exists(filename)
with open(filename, "r") as fd:
lines = fd.readlines()
@@ -29,7 +30,10 @@ def ensure_results(filename, expected):
if expected in line:
have = True
break
assert have
if present:
assert have, f"Expected '{expected}' in the file"
else:
assert not have, f"Expected '{expected}' NOT to be in the file"
def test_test_log_name(mock_packages, config):
@@ -78,8 +82,8 @@ def test_write_test_result(mock_packages, mock_test_stage):
assert spec.name in msg
def test_test_uninstalled(mock_packages, install_mockery, mock_test_stage):
"""Attempt to perform stand-alone test for uninstalled package."""
def test_test_not_installed(mock_packages, install_mockery, mock_test_stage):
"""Attempt to perform stand-alone test for not_installed package."""
spec = spack.spec.Spec("trivial-smoke-test").concretized()
test_suite = spack.install_test.TestSuite([spec])
@@ -91,10 +95,7 @@ def test_test_uninstalled(mock_packages, install_mockery, mock_test_stage):
@pytest.mark.parametrize(
"arguments,status,msg",
[
({}, spack.install_test.TestStatus.SKIPPED, "Skipped"),
({"externals": True}, spack.install_test.TestStatus.NO_TESTS, "No tests"),
],
[({}, TestStatus.SKIPPED, "Skipped"), ({"externals": True}, TestStatus.NO_TESTS, "No tests")],
)
def test_test_external(
mock_packages, install_mockery, mock_test_stage, monkeypatch, arguments, status, msg
@@ -156,6 +157,7 @@ def test_test_spec_passes(mock_packages, install_mockery, mock_test_stage, monke
ensure_results(test_suite.results_file, "PASSED")
ensure_results(test_suite.log_file_for_spec(spec), "simple stand-alone")
ensure_results(test_suite.log_file_for_spec(spec), "standalone-ifc", present=False)
def test_get_test_suite():
@@ -212,8 +214,10 @@ def test_test_functions_pkgless(mock_packages, install_mockery, ensure_debug, ca
spec = spack.spec.Spec("simple-standalone-test").concretized()
fns = spack.install_test.test_functions(spec.package, add_virtuals=True)
out = capsys.readouterr()
assert len(fns) == 1, "Expected only one test function"
assert "does not appear to have a package file" in out[1]
assert len(fns) == 2, "Expected two test functions"
for f in fns:
assert f[1].__name__ in ["test_echo", "test_skip"]
assert "virtual does not appear to have a package file" in out[1]
# TODO: This test should go away when compilers as dependencies is supported
@@ -301,7 +305,7 @@ def test_test_part_fail(tmpdir, install_mockery_mutable_config, mock_fetch, mock
for part_name, status in pkg.tester.test_parts.items():
assert part_name.endswith(name)
assert status == spack.install_test.TestStatus.FAILED
assert status == TestStatus.FAILED
def test_test_part_pass(install_mockery_mutable_config, mock_fetch, mock_test_stage):
@@ -317,7 +321,7 @@ def test_test_part_pass(install_mockery_mutable_config, mock_fetch, mock_test_st
for part_name, status in pkg.tester.test_parts.items():
assert part_name.endswith(name)
assert status == spack.install_test.TestStatus.PASSED
assert status == TestStatus.PASSED
def test_test_part_skip(install_mockery_mutable_config, mock_fetch, mock_test_stage):
@@ -331,7 +335,7 @@ def test_test_part_skip(install_mockery_mutable_config, mock_fetch, mock_test_st
for part_name, status in pkg.tester.test_parts.items():
assert part_name.endswith(name)
assert status == spack.install_test.TestStatus.SKIPPED
assert status == TestStatus.SKIPPED
def test_test_part_missing_exe_fail_fast(
@@ -354,7 +358,7 @@ def test_test_part_missing_exe_fail_fast(
assert len(test_parts) == 1
for part_name, status in test_parts.items():
assert part_name.endswith(name)
assert status == spack.install_test.TestStatus.FAILED
assert status == TestStatus.FAILED
def test_test_part_missing_exe(
@@ -375,7 +379,90 @@ def test_test_part_missing_exe(
assert len(test_parts) == 1
for part_name, status in test_parts.items():
assert part_name.endswith(name)
assert status == spack.install_test.TestStatus.FAILED
assert status == TestStatus.FAILED
# TODO (embedded test parts): Update this once embedded test part tracking
# TODO (embedded test parts): properly handles the nested context managers.
@pytest.mark.parametrize(
"current,substatuses,expected",
[
(TestStatus.PASSED, [TestStatus.PASSED, TestStatus.PASSED], TestStatus.PASSED),
(TestStatus.FAILED, [TestStatus.PASSED, TestStatus.PASSED], TestStatus.FAILED),
(TestStatus.SKIPPED, [TestStatus.PASSED, TestStatus.PASSED], TestStatus.SKIPPED),
(TestStatus.NO_TESTS, [TestStatus.PASSED, TestStatus.PASSED], TestStatus.NO_TESTS),
(TestStatus.PASSED, [TestStatus.PASSED, TestStatus.SKIPPED], TestStatus.PASSED),
(TestStatus.PASSED, [TestStatus.PASSED, TestStatus.FAILED], TestStatus.FAILED),
(TestStatus.PASSED, [TestStatus.SKIPPED, TestStatus.SKIPPED], TestStatus.SKIPPED),
],
)
def test_embedded_test_part_status(
install_mockery_mutable_config, mock_fetch, mock_test_stage, current, substatuses, expected
):
"""Check to ensure the status of the enclosing test part reflects summary of embedded parts."""
s = spack.spec.Spec("trivial-smoke-test").concretized()
pkg = s.package
base_name = "test_example"
part_name = f"{pkg.__class__.__name__}::{base_name}"
pkg.tester.test_parts[part_name] = current
for i, status in enumerate(substatuses):
pkg.tester.test_parts[f"{part_name}_{i}"] = status
pkg.tester.status(base_name, current)
assert pkg.tester.test_parts[part_name] == expected
@pytest.mark.parametrize(
"statuses,expected",
[
([TestStatus.PASSED, TestStatus.PASSED], TestStatus.PASSED),
([TestStatus.PASSED, TestStatus.SKIPPED], TestStatus.PASSED),
([TestStatus.PASSED, TestStatus.FAILED], TestStatus.FAILED),
([TestStatus.SKIPPED, TestStatus.SKIPPED], TestStatus.SKIPPED),
([], TestStatus.NO_TESTS),
],
)
def test_write_tested_status(
tmpdir, install_mockery_mutable_config, mock_fetch, mock_test_stage, statuses, expected
):
"""Check to ensure the status of the enclosing test part reflects summary of embedded parts."""
s = spack.spec.Spec("trivial-smoke-test").concretized()
pkg = s.package
for i, status in enumerate(statuses):
pkg.tester.test_parts[f"test_{i}"] = status
pkg.tester.counts[status] += 1
pkg.tester.tested_file = tmpdir.join("test-log.txt")
pkg.tester.write_tested_status()
with open(pkg.tester.tested_file, "r") as f:
status = int(f.read().strip("\n"))
assert TestStatus(status) == expected
@pytest.mark.regression("37840")
def test_write_tested_status_no_repeats(
tmpdir, install_mockery_mutable_config, mock_fetch, mock_test_stage
):
"""Emulate re-running the same stand-alone tests a second time."""
s = spack.spec.Spec("trivial-smoke-test").concretized()
pkg = s.package
statuses = [TestStatus.PASSED, TestStatus.PASSED]
for i, status in enumerate(statuses):
pkg.tester.test_parts[f"test_{i}"] = status
pkg.tester.counts[status] += 1
pkg.tester.tested_file = tmpdir.join("test-log.txt")
pkg.tester.write_tested_status()
pkg.tester.write_tested_status()
# The test should NOT result in a ValueError: invalid literal for int()
# with base 10: '2\n2' (i.e., the results being appended instead of
# written to the file).
with open(pkg.tester.tested_file, "r") as f:
status = int(f.read().strip("\n"))
assert TestStatus(status) == TestStatus.PASSED
def test_check_special_outputs(tmpdir):

View File

@@ -119,7 +119,10 @@ def test_dump_environment(prepare_environment_for_tests, tmpdir):
dumpfile_path = str(tmpdir.join("envdump.txt"))
envutil.dump_environment(dumpfile_path)
with open(dumpfile_path, "r") as dumpfile:
assert "TEST_ENV_VAR={0}; export TEST_ENV_VAR\n".format(test_paths) in list(dumpfile)
if sys.platform == "win32":
assert 'set "TEST_ENV_VAR={}"\n'.format(test_paths) in list(dumpfile)
else:
assert "TEST_ENV_VAR={0}; export TEST_ENV_VAR\n".format(test_paths) in list(dumpfile)
def test_reverse_environment_modifications(working_env):

View File

@@ -171,7 +171,11 @@ def path_put_first(var_name: str, directories: List[Path]):
BASH_FUNCTION_FINDER = re.compile(r"BASH_FUNC_(.*?)\(\)")
def _env_var_to_source_line(var: str, val: str) -> str:
def _win_env_var_to_set_line(var: str, val: str) -> str:
return f'set "{var}={val}"'
def _nix_env_var_to_source_line(var: str, val: str) -> str:
if var.startswith("BASH_FUNC"):
source_line = "function {fname}{decl}; export -f {fname}".format(
fname=BASH_FUNCTION_FINDER.sub(r"\1", var), decl=val
@@ -181,6 +185,13 @@ def _env_var_to_source_line(var: str, val: str) -> str:
return source_line
def _env_var_to_source_line(var: str, val: str) -> str:
if sys.platform == "win32":
return _win_env_var_to_set_line(var, val)
else:
return _nix_env_var_to_source_line(var, val)
@system_path_filter(arg_slice=slice(1))
def dump_environment(path: Path, environment: Optional[MutableMapping[str, str]] = None):
"""Dump an environment dictionary to a source-able file.

View File

@@ -14,6 +14,26 @@ default:
SPACK_TARGET_PLATFORM: "linux"
SPACK_TARGET_ARCH: "x86_64_v3"
.linux_skylake:
variables:
SPACK_TARGET_PLATFORM: "linux"
SPACK_TARGET_ARCH: "skylake_avx512"
.linux_icelake:
variables:
SPACK_TARGET_PLATFORM: "linux"
SPACK_TARGET_ARCH: "icelake"
.linux_neoverse_n1:
variables:
SPACK_TARGET_PLATFORM: "linux"
SPACK_TARGET_ARCH: "neoverse_n1"
.linux_neoverse_v1:
variables:
SPACK_TARGET_PLATFORM: "linux"
SPACK_TARGET_ARCH: "neoverse_v1"
.linux_aarch64:
variables:
SPACK_TARGET_PLATFORM: "linux"
@@ -108,6 +128,38 @@ default:
extends: [ ".base-job", ".generate-base" ]
tags: ["spack", "public", "medium", "x86_64"]
.darwin-generate-base:
stage: generate
script:
- export SPACK_DISABLE_LOCAL_CONFIG=1
- export SPACK_USER_CACHE_PATH=$(pwd)/_user_cache
- uname -a || true
- grep -E 'vendor|model name' /proc/cpuinfo 2>/dev/null | sort -u || head -n10 /proc/cpuinfo 2>/dev/null || true
- nproc || true
- . "./share/spack/setup-env.sh"
- spack --version
- cd share/spack/gitlab/cloud_pipelines/stacks/${SPACK_CI_STACK_NAME}
- spack env activate --without-view .
- spack -d ci generate --check-index-only
--buildcache-destination "${SPACK_BUILDCACHE_DESTINATION}"
--artifacts-root "${CI_PROJECT_DIR}/jobs_scratch_dir"
--output-file "${CI_PROJECT_DIR}/jobs_scratch_dir/cloud-ci-pipeline.yml"
after_script:
- cat /proc/loadavg || true
artifacts:
paths:
- "${CI_PROJECT_DIR}/jobs_scratch_dir"
interruptible: true
timeout: 60 minutes
retry:
max: 2
when:
- always
.darwin-generate:
extends: [ ".base-job", ".darwin-generate-base" ]
.generate-deprecated:
extends: [ ".base-job" ]
stage: generate
@@ -216,124 +268,6 @@ protected-publish:
# - artifacts: True
# job: my-super-cool-stack-generate
########################################
# E4S Mac Stack
#
# With no near-future plans to have
# protected aws runners running mac
# builds, it seems best to decouple
# them from the rest of the stacks for
# the time being. This way they can
# still run on UO runners and be signed
# using the previous approach.
########################################
# .e4s-mac:
# variables:
# SPACK_CI_STACK_NAME: e4s-mac
# allow_failure: True
# .mac-pr:
# only:
# - /^pr[\d]+_.*$/
# - /^github\/pr[\d]+_.*$/
# variables:
# SPACK_BUILDCACHE_DESTINATION: "s3://spack-binaries-prs/${CI_COMMIT_REF_NAME}"
# SPACK_PRUNE_UNTOUCHED: "True"
# .mac-protected:
# only:
# - /^develop$/
# - /^releases\/v.*/
# - /^v.*/
# - /^github\/develop$/
# variables:
# SPACK_BUILDCACHE_DESTINATION: "s3://spack-binaries/${CI_COMMIT_REF_NAME}/${SPACK_CI_STACK_NAME}"
# .mac-pr-build:
# extends: [ ".mac-pr", ".build" ]
# variables:
# AWS_ACCESS_KEY_ID: ${PR_MIRRORS_AWS_ACCESS_KEY_ID}
# AWS_SECRET_ACCESS_KEY: ${PR_MIRRORS_AWS_SECRET_ACCESS_KEY}
# .mac-protected-build:
# extends: [ ".mac-protected", ".build" ]
# variables:
# AWS_ACCESS_KEY_ID: ${PROTECTED_MIRRORS_AWS_ACCESS_KEY_ID}
# AWS_SECRET_ACCESS_KEY: ${PROTECTED_MIRRORS_AWS_SECRET_ACCESS_KEY}
# SPACK_SIGNING_KEY: ${PACKAGE_SIGNING_KEY}
# e4s-mac-pr-generate:
# extends: [".e4s-mac", ".mac-pr"]
# stage: generate
# script:
# - tmp="$(mktemp -d)"; export SPACK_USER_CONFIG_PATH="$tmp"; export SPACK_USER_CACHE_PATH="$tmp"
# - . "./share/spack/setup-env.sh"
# - spack --version
# - cd share/spack/gitlab/cloud_pipelines/stacks/${SPACK_CI_STACK_NAME}
# - spack env activate --without-view .
# - spack ci generate --check-index-only
# --buildcache-destination "${SPACK_BUILDCACHE_DESTINATION}"
# --artifacts-root "${CI_PROJECT_DIR}/jobs_scratch_dir"
# --output-file "${CI_PROJECT_DIR}/jobs_scratch_dir/cloud-ci-pipeline.yml"
# artifacts:
# paths:
# - "${CI_PROJECT_DIR}/jobs_scratch_dir"
# tags:
# - lambda
# interruptible: true
# retry:
# max: 2
# when:
# - runner_system_failure
# - stuck_or_timeout_failure
# timeout: 60 minutes
# e4s-mac-protected-generate:
# extends: [".e4s-mac", ".mac-protected"]
# stage: generate
# script:
# - tmp="$(mktemp -d)"; export SPACK_USER_CONFIG_PATH="$tmp"; export SPACK_USER_CACHE_PATH="$tmp"
# - . "./share/spack/setup-env.sh"
# - spack --version
# - cd share/spack/gitlab/cloud_pipelines/stacks/${SPACK_CI_STACK_NAME}
# - spack env activate --without-view .
# - spack ci generate --check-index-only
# --artifacts-root "${CI_PROJECT_DIR}/jobs_scratch_dir"
# --output-file "${CI_PROJECT_DIR}/jobs_scratch_dir/cloud-ci-pipeline.yml"
# artifacts:
# paths:
# - "${CI_PROJECT_DIR}/jobs_scratch_dir"
# tags:
# - omicron
# interruptible: true
# retry:
# max: 2
# when:
# - runner_system_failure
# - stuck_or_timeout_failure
# timeout: 60 minutes
# e4s-mac-pr-build:
# extends: [ ".e4s-mac", ".mac-pr-build" ]
# trigger:
# include:
# - artifact: jobs_scratch_dir/cloud-ci-pipeline.yml
# job: e4s-mac-pr-generate
# strategy: depend
# needs:
# - artifacts: True
# job: e4s-mac-pr-generate
# e4s-mac-protected-build:
# extends: [ ".e4s-mac", ".mac-protected-build" ]
# trigger:
# include:
# - artifact: jobs_scratch_dir/cloud-ci-pipeline.yml
# job: e4s-mac-protected-generate
# strategy: depend
# needs:
# - artifacts: True
# job: e4s-mac-protected-generate
########################################
# E4S pipeline
########################################
@@ -742,6 +676,28 @@ ml-linux-x86_64-rocm-build:
- artifacts: True
job: ml-linux-x86_64-rocm-generate
########################################
# Machine Learning - Darwin aarch64 (MPS)
########################################
.ml-darwin-aarch64-mps:
variables:
SPACK_CI_STACK_NAME: ml-darwin-aarch64-mps
ml-darwin-aarch64-mps-generate:
tags: [ "macos-ventura", "apple-clang-14", "aarch64-macos" ]
extends: [ ".ml-darwin-aarch64-mps", ".darwin-generate"]
ml-darwin-aarch64-mps-build:
extends: [ ".ml-darwin-aarch64-mps", ".build" ]
trigger:
include:
- artifact: jobs_scratch_dir/cloud-ci-pipeline.yml
job: ml-darwin-aarch64-mps-generate
strategy: depend
needs:
- artifacts: True
job: ml-darwin-aarch64-mps-generate
########################################
# Deprecated CI testing
########################################
@@ -762,3 +718,100 @@ deprecated-ci-build:
needs:
- artifacts: True
job: deprecated-ci-generate
########################################
# AWS PCLUSTER
########################################
.aws-pcluster-generate-image:
image: { "name": "ghcr.io/spack/pcluster-amazonlinux-2:v2023-05-25", "entrypoint": [""] }
.aws-pcluster-generate:
before_script:
# Use gcc from local container buildcache
- - . "./share/spack/setup-env.sh"
- . /etc/profile.d/modules.sh
- spack mirror add local-cache /bootstrap/local-cache
- spack gpg trust /bootstrap/public-key
- cd "${CI_PROJECT_DIR}" && curl -sOL https://raw.githubusercontent.com/spack/spack-configs/main/AWS/parallelcluster/postinstall.sh
- sed -i -e "s/spack arch -t/echo ${SPACK_TARGET_ARCH}/g" postinstall.sh
- /bin/bash postinstall.sh -fg
- spack config --scope site add "packages:all:target:\"target=${SPACK_TARGET_ARCH}\""
after_script:
- - mv "${CI_PROJECT_DIR}/postinstall.sh" "${CI_PROJECT_DIR}/jobs_scratch_dir/"
# Icelake (one pipeline per target)
.aws-pcluster-icelake:
variables:
SPACK_CI_STACK_NAME: aws-pcluster-icelake
aws-pcluster-generate-icelake:
extends: [ ".linux_icelake", ".aws-pcluster-icelake", ".generate", ".tags-x86_64_v4", ".aws-pcluster-generate", ".aws-pcluster-generate-image" ]
aws-pcluster-build-icelake:
extends: [ ".linux_icelake", ".aws-pcluster-icelake", ".build" ]
trigger:
include:
- artifact: jobs_scratch_dir/cloud-ci-pipeline.yml
job: aws-pcluster-generate-icelake
strategy: depend
needs:
- artifacts: True
job: aws-pcluster-generate-icelake
# Skylake_avx512 (one pipeline per target)
.aws-pcluster-skylake:
variables:
SPACK_CI_STACK_NAME: aws-pcluster-skylake
aws-pcluster-generate-skylake:
extends: [ ".linux_skylake", ".aws-pcluster-skylake", ".generate", ".tags-x86_64_v4", ".aws-pcluster-generate", ".aws-pcluster-generate-image" ]
aws-pcluster-build-skylake:
extends: [ ".linux_skylake", ".aws-pcluster-skylake", ".build" ]
trigger:
include:
- artifact: jobs_scratch_dir/cloud-ci-pipeline.yml
job: aws-pcluster-generate-skylake
strategy: depend
needs:
- artifacts: True
job: aws-pcluster-generate-skylake
# Neoverse_n1 (one pipeline per target)
.aws-pcluster-neoverse_n1:
variables:
SPACK_CI_STACK_NAME: aws-pcluster-neoverse_n1
aws-pcluster-generate-neoverse_n1:
extends: [ ".linux_neoverse_n1", ".aws-pcluster-neoverse_n1", ".generate-aarch64", ".aws-pcluster-generate", ".aws-pcluster-generate-image" ]
aws-pcluster-build-neoverse_n1:
extends: [ ".linux_neoverse_n1", ".aws-pcluster-neoverse_n1", ".build" ]
trigger:
include:
- artifact: jobs_scratch_dir/cloud-ci-pipeline.yml
job: aws-pcluster-generate-neoverse_n1
strategy: depend
needs:
- artifacts: True
job: aws-pcluster-generate-neoverse_n1
# Neoverse_v1 (one pipeline per target)
.aws-pcluster-neoverse_v1:
variables:
SPACK_CI_STACK_NAME: aws-pcluster-neoverse_v1
aws-pcluster-generate-neoverse_v1:
extends: [ ".linux_neoverse_v1", ".aws-pcluster-neoverse_v1", ".generate-aarch64", ".aws-pcluster-generate", ".aws-pcluster-generate-image" ]
aws-pcluster-build-neoverse_v1:
extends: [ ".linux_neoverse_v1", ".aws-pcluster-neoverse_v1", ".build" ]
trigger:
include:
- artifact: jobs_scratch_dir/cloud-ci-pipeline.yml
job: aws-pcluster-generate-neoverse_v1
strategy: depend
needs:
- artifacts: True
job: aws-pcluster-generate-neoverse_v1

View File

@@ -0,0 +1,27 @@
compilers:
- compiler:
spec: apple-clang@14.0.0
paths:
cc: /usr/bin/clang
cxx: /usr/bin/clang++
f77: /opt/homebrew/bin/gfortran
fc: /opt/homebrew/bin/gfortran
flags: {}
operating_system: ventura
target: aarch64
modules: []
environment: {}
extra_rpaths: []
- compiler:
spec: gcc@12.2.0
paths:
cc: /opt/homebrew/bin/gcc-12
cxx: /opt/homebrew/bin/g++-12
f77: /opt/homebrew/bin/gfortran-12
fc: /opt/homebrew/bin/gfortran-12
flags: {}
operating_system: ventura
target: aarch64
modules: []
environment: {}
extra_rpaths: []

View File

@@ -0,0 +1,3 @@
config:
install_tree:
root: $spack/opt/spack

View File

@@ -1,14 +0,0 @@
ci:
pipeline-gen:
- build-job:
script: |
- tmp="$(mktemp -d)"; export SPACK_USER_CONFIG_PATH="$tmp"; export SPACK_USER_CACHE_PATH="$tmp"
- . "./share/spack/setup-env.sh"
- spack --version
- spack arch
- cd ${SPACK_CONCRETE_ENV_DIR}
- spack env activate --without-view .
- spack config add "config:install_tree:projections:${SPACK_JOB_SPEC_PKG_NAME}:'morepadding/{architecture}/{compiler.name}-{compiler.version}/{name}-{version}-{hash}'"
- mkdir -p ${SPACK_ARTIFACTS_ROOT}/user_data
- spack --color=always --backtrace ci rebuild > >(tee ${SPACK_ARTIFACTS_ROOT}/user_data/pipeline_out.txt) 2> >(tee ${SPACK_ARTIFACTS_ROOT}/user_data/pipeline_err.txt >&2)
tags: ["lambda"]

View File

@@ -0,0 +1,11 @@
ci:
pipeline-gen:
- any-job:
variables:
SPACK_TARGET_ARCH: icelake
- build-job:
before_script:
- - curl -LfsS "https://github.com/JuliaBinaryWrappers/GNUMake_jll.jl/releases/download/GNUMake-v4.3.0+1/GNUMake.v4.3.0.x86_64-linux-gnu.tar.gz" -o gmake.tar.gz
- printf "fef1f59e56d2d11e6d700ba22d3444b6e583c663d6883fd0a4f63ab8bd280f0f gmake.tar.gz" | sha256sum --check --strict --quiet
- tar -xzf gmake.tar.gz -C /usr bin/make 2> /dev/null
tags: ["x86_64_v4"]

View File

@@ -0,0 +1,7 @@
ci:
pipeline-gen:
- any-job:
variables:
SPACK_TARGET_ARCH: neoverse_n1
- build-job:
tags: ["aarch64", "graviton2"]

View File

@@ -0,0 +1,7 @@
ci:
pipeline-gen:
- any-job:
variables:
SPACK_TARGET_ARCH: neoverse_v1
- build-job:
tags: ["aarch64", "graviton3"]

View File

@@ -0,0 +1,11 @@
ci:
pipeline-gen:
- any-job:
variables:
SPACK_TARGET_ARCH: skylake_avx512
- build-job:
before_script:
- - curl -LfsS "https://github.com/JuliaBinaryWrappers/GNUMake_jll.jl/releases/download/GNUMake-v4.3.0+1/GNUMake.v4.3.0.x86_64-linux-gnu.tar.gz" -o gmake.tar.gz
- printf "fef1f59e56d2d11e6d700ba22d3444b6e583c663d6883fd0a4f63ab8bd280f0f gmake.tar.gz" | sha256sum --check --strict --quiet
- tar -xzf gmake.tar.gz -C /usr bin/make 2> /dev/null
tags: ["x86_64_v4"]

View File

@@ -0,0 +1,55 @@
spack:
view: false
definitions:
- compiler_specs:
- gcc
- gettext
- compiler_target:
- '%gcc@7.3.1 target=x86_64_v3'
- optimized_configs:
# - gromacs
- lammps
# - mpas-model
- openfoam
# - palace
# - py-devito
# - quantum-espresso
# - wrf
- optimized_libs:
- mpich
- openmpi
specs:
- matrix:
- - $compiler_specs
- - $compiler_target
- $optimized_configs
# - $optimized_libs
mirrors: { "mirror": "s3://spack-binaries/develop/aws-pcluster-icelake" }
ci:
pipeline-gen:
- build-job:
image: { "name": "ghcr.io/spack/pcluster-amazonlinux-2:v2023-05-25", "entrypoint": [""] }
before_script:
- - . "./share/spack/setup-env.sh"
- . /etc/profile.d/modules.sh
- spack --version
- spack arch
# Use gcc from local container buildcache
- - spack mirror add local-cache /bootstrap/local-cache
- spack gpg trust /bootstrap/public-key
- - /bin/bash "${SPACK_ARTIFACTS_ROOT}/postinstall.sh" -fg
- spack config --scope site add "packages:all:target:\"target=${SPACK_TARGET_ARCH}\""
- signing-job:
before_script:
# Do not distribute Intel & ARM binaries
- - for i in $(aws s3 ls --recursive ${SPACK_REMOTE_MIRROR_OVERRIDE}/build_cache/ | grep intel-oneapi | awk '{print $4}' | sed -e 's?^.*build_cache/??g'); do aws s3 rm ${SPACK_REMOTE_MIRROR_OVERRIDE}/build_cache/$i; done
- for i in $(aws s3 ls --recursive ${SPACK_REMOTE_MIRROR_OVERRIDE}/build_cache/ | grep armpl | awk '{print $4}' | sed -e 's?^.*build_cache/??g'); do aws s3 rm ${SPACK_REMOTE_MIRROR_OVERRIDE}/build_cache/$i; done
cdash:
build-group: AWS Packages

View File

@@ -0,0 +1,58 @@
spack:
view: false
definitions:
- compiler_specs:
- gcc
- gettext
- compiler_target:
- '%gcc@7.3.1 target=aarch64'
- optimized_configs:
- gromacs
# - lammps
# - mpas-model
- openfoam
- palace
# - py-devito
# - quantum-espresso
# - wrf
- optimized_libs:
- mpich
- openmpi
specs:
- matrix:
- - $compiler_specs
- - $compiler_target
- $optimized_configs
- $optimized_libs
mirrors: { "mirror": "s3://spack-binaries/develop/aws-pcluster-neoverse_n1" }
ci:
pipeline-gen:
- build-job:
image: { "name": "ghcr.io/spack/pcluster-amazonlinux-2:v2023-05-25", "entrypoint": [""] }
tags: ["aarch64"]
before_script:
- - . "./share/spack/setup-env.sh"
- . /etc/profile.d/modules.sh
- spack --version
- spack arch
# Use gcc from local container buildcache
- - spack mirror add local-cache /bootstrap/local-cache
- spack gpg trust /bootstrap/public-key
- - /bin/bash "${SPACK_ARTIFACTS_ROOT}/postinstall.sh" -fg
- spack config --scope site add "packages:all:target:\"target=${SPACK_TARGET_ARCH}\""
- signing-job:
before_script:
# Do not distribute Intel & ARM binaries
- - for i in $(aws s3 ls --recursive ${SPACK_REMOTE_MIRROR_OVERRIDE}/build_cache/ | grep intel-oneapi | awk '{print $4}' | sed -e 's?^.*build_cache/??g'); do aws s3 rm ${SPACK_REMOTE_MIRROR_OVERRIDE}/build_cache/$i; done
- for i in $(aws s3 ls --recursive ${SPACK_REMOTE_MIRROR_OVERRIDE}/build_cache/ | grep armpl | awk '{print $4}' | sed -e 's?^.*build_cache/??g'); do aws s3 rm ${SPACK_REMOTE_MIRROR_OVERRIDE}/build_cache/$i; done
cdash:
build-group: AWS Packages

View File

@@ -0,0 +1,58 @@
spack:
view: false
definitions:
- compiler_specs:
- gcc
- gettext
- compiler_target:
- '%gcc@7.3.1 target=aarch64'
- optimized_configs:
- gromacs
# - lammps
# - mpas-model
- openfoam
- palace
# - py-devito
# - quantum-espresso
# - wrf
- optimized_libs:
- mpich
- openmpi
specs:
- matrix:
- - $compiler_specs
- - $compiler_target
- $optimized_configs
- $optimized_libs
mirrors: { "mirror": "s3://spack-binaries/develop/aws-pcluster-neoverse_v1" }
ci:
pipeline-gen:
- build-job:
image: { "name": "ghcr.io/spack/pcluster-amazonlinux-2:v2023-05-25", "entrypoint": [""] }
tags: ["aarch64"]
before_script:
- - . "./share/spack/setup-env.sh"
- . /etc/profile.d/modules.sh
- spack --version
- spack arch
# Use gcc from local container buildcache
- - spack mirror add local-cache /bootstrap/local-cache
- spack gpg trust /bootstrap/public-key
- - /bin/bash "${SPACK_ARTIFACTS_ROOT}/postinstall.sh" -fg
- spack config --scope site add "packages:all:target:\"target=${SPACK_TARGET_ARCH}\""
- signing-job:
before_script:
# Do not distribute Intel & ARM binaries
- - for i in $(aws s3 ls --recursive ${SPACK_REMOTE_MIRROR_OVERRIDE}/build_cache/ | grep intel-oneapi | awk '{print $4}' | sed -e 's?^.*build_cache/??g'); do aws s3 rm ${SPACK_REMOTE_MIRROR_OVERRIDE}/build_cache/$i; done
- for i in $(aws s3 ls --recursive ${SPACK_REMOTE_MIRROR_OVERRIDE}/build_cache/ | grep armpl | awk '{print $4}' | sed -e 's?^.*build_cache/??g'); do aws s3 rm ${SPACK_REMOTE_MIRROR_OVERRIDE}/build_cache/$i; done
cdash:
build-group: AWS Packages

View File

@@ -0,0 +1,55 @@
spack:
view: false
definitions:
- compiler_specs:
- gcc
- gettext
- compiler_target:
- '%gcc@7.3.1 target=x86_64_v3'
- optimized_configs:
# - gromacs
- lammps
# - mpas-model
- openfoam
# - palace
# - py-devito
# - quantum-espresso
# - wrf
- optimized_libs:
- mpich
- openmpi
specs:
- matrix:
- - $compiler_specs
- - $compiler_target
- $optimized_configs
# - $optimized_libs
mirrors: { "mirror": "s3://spack-binaries/develop/aws-pcluster-skylake" }
ci:
pipeline-gen:
- build-job:
image: { "name": "ghcr.io/spack/pcluster-amazonlinux-2:v2023-05-25", "entrypoint": [""] }
before_script:
- - . "./share/spack/setup-env.sh"
- . /etc/profile.d/modules.sh
- spack --version
- spack arch
# Use gcc from local container buildcache
- - spack mirror add local-cache /bootstrap/local-cache
- spack gpg trust /bootstrap/public-key
- - /bin/bash "${SPACK_ARTIFACTS_ROOT}/postinstall.sh" -fg
- spack config --scope site add "packages:all:target:\"target=${SPACK_TARGET_ARCH}\""
- signing-job:
before_script:
# Do not distribute Intel & ARM binaries
- - for i in $(aws s3 ls --recursive ${SPACK_REMOTE_MIRROR_OVERRIDE}/build_cache/ | grep intel-oneapi | awk '{print $4}' | sed -e 's?^.*build_cache/??g'); do aws s3 rm ${SPACK_REMOTE_MIRROR_OVERRIDE}/build_cache/$i; done
- for i in $(aws s3 ls --recursive ${SPACK_REMOTE_MIRROR_OVERRIDE}/build_cache/ | grep armpl | awk '{print $4}' | sed -e 's?^.*build_cache/??g'); do aws s3 rm ${SPACK_REMOTE_MIRROR_OVERRIDE}/build_cache/$i; done
cdash:
build-group: AWS Packages

View File

@@ -1,40 +0,0 @@
spack:
view: false
packages:
all:
compiler: [apple-clang@13.1.6]
target: [m1]
definitions:
- easy_specs:
- berkeley-db
- ncurses
- gcc
- py-jupyterlab
- py-scipy
- py-matplotlib
- py-pandas
- arch:
- '%apple-clang@13.1.6 target=m1'
specs:
- matrix:
- - $easy_specs
- - $arch
mirrors: { "mirror": "s3://spack-binaries/develop/e4s-mac" }
ci:
pipeline-gen:
- cleanup-job:
before_script: |
- export SPACK_USER_CACHE_PATH=$(pwd)/.spack-user-cache
- export SPACK_USER_CONFIG_PATH=$(pwd)/.spack-user-config
- . "./share/spack/setup-env.sh"
- spack --version
tags: [lambda]
cdash:
build-group: E4S Mac

View File

@@ -70,6 +70,7 @@ spack:
- charliecloud
- conduit
- datatransferkit
- dealii
- dyninst
- ecp-data-vis-sdk ~cuda ~rocm +adios2 +ascent +cinema +darshan +faodel +hdf5 +paraview +pnetcdf +sz +unifyfs +veloc ~visit +vtkm +zfp ^hdf5@1.14
- exaworks

View File

@@ -0,0 +1,139 @@
spack:
view: false
concretizer:
unify: false
reuse: false
config:
concretizer: clingo
db_lock_timeout: 120
install_tree:
root: $spack/opt/spack
padded_length: 256
projections:
all: '{architecture}/{compiler.name}-{compiler.version}/{name}-{version}-{hash}'
packages:
all:
require: target=aarch64
variants: +mps~cuda~rocm
mpi:
require: openmpi
specs:
# Hugging Face
- py-transformers
# JAX
- py-jax
# - py-jaxlib # bazel codesign
# Keras
- py-keras-applications
- py-keras-preprocessing
- py-keras2onnx
# - py-keras # bazel codesign
# MXNet
- mxnet
# PyTorch
- py-botorch
- py-gpytorch
- py-pytorch-gradual-warmup-lr
- py-segmentation-models-pytorch
- py-timm
- py-torch
- py-torch-cluster
- py-torch-geometric
- py-torch-sparse
- py-torchdata
- py-torchfile
- py-torchgeo
- py-torchvision
# scikit-learn
- py-scikit-learn
- py-scikit-learn-extra
# TensorBoard
- py-tensorboard
- py-tensorboard-data-server
- py-tensorboard-plugin-wit
- py-tensorboardx
# TensorFlow
# - py-tensorflow # bazel codesign
# - py-tensorflow-datasets # bazel codesign
# - py-tensorflow-hub # bazel codesign
# - py-tensorflow-metadata # bazel codesign
# - py-tensorflow-estimator # bazel codesign
# - py-tensorflow-probability # py-dm-tree due to bazel codesign
# XGBoost
- py-xgboost
- xgboost
# ERRORS
# - py-efficientnet-pytorch # py-torch
# - py-horovod # py-torch
# - py-kornia # py-torch
# - py-lightning # py-torch
# - py-pytorch-lightning # py-torch
# - py-torch-nvidia-apex # py-torch
# - py-torch-scatter # py-torch
# - py-torch-spline-conv # py-torch
# - py-torchaudio # py-torchaudio
# - py-torchmetrics # py-torch
# - py-torchtext # py-torchtext
# - py-vector-quantize-pytorch # py-torch
# - r-xgboost # r
mirrors: { "mirror": "s3://spack-binaries/develop/ml-darwin-aarch64-cpu" }
ci:
pipeline-gen:
- build-job-remove:
image: no-image
tags: [spack, public]
- build-job:
tags: [ "macos-ventura", "apple-clang-14", "aarch64-macos" ]
script::
- - spack compiler find
- cd ${SPACK_CONCRETE_ENV_DIR}
- spack env activate --without-view .
- if [ -n "$SPACK_BUILD_JOBS" ]; then spack config add "config:build_jobs:$SPACK_BUILD_JOBS"; fi
- mkdir -p ${SPACK_ARTIFACTS_ROOT}/user_data
# AWS runners mount E4S public key (verification), UO runners mount public/private (signing/verification)
- if [[ -r /etc/protected-runner/e4s.gpg ]]; then spack gpg trust /etc/protected-runner/e4s.gpg; fi
# UO runners mount intermediate ci public key (verification), AWS runners mount public/private (signing/verification)
- if [[ -r /etc/protected-runner/intermediate_ci_signing_key.gpg ]]; then spack gpg trust /etc/protected-runner/intermediate_ci_signing_key.gpg; fi
- if [[ -r /etc/protected-runner/spack_public_key.gpg ]]; then spack gpg trust /etc/protected-runner/spack_public_key.gpg; fi
- spack --color=always --backtrace ci rebuild --tests > >(tee ${SPACK_ARTIFACTS_ROOT}/user_data/pipeline_out.txt) 2> >(tee ${SPACK_ARTIFACTS_ROOT}/user_data/pipeline_err.txt >&2)
after_script:
- - cat /proc/loadavg || true
- signing-job:
image: { "name": "ghcr.io/spack/notary:latest", "entrypoint": [""] }
tags: ["aws"]
script:
- - aws s3 sync --exclude "*" --include "*spec.json*" ${SPACK_REMOTE_MIRROR_OVERRIDE}/build_cache /tmp
- /sign.sh
- aws s3 sync --exclude "*" --include "*spec.json.sig*" /tmp ${SPACK_REMOTE_MIRROR_OVERRIDE}/build_cache
- aws s3 cp /tmp/public_keys ${SPACK_REMOTE_MIRROR_OVERRIDE}/build_cache/_pgp --recursive --exclude "*" --include "*.pub"
- any-job:
image: "ghcr.io/spack/e4s-ubuntu-18.04:v2021-10-18"
tags: ["spack"]
before_script:
- - uname -a || true
- grep -E "vendor|model name" /proc/cpuinfo 2>/dev/null | sort -u || head -n10 /proc/cpuinfo 2>/dev/null || true
- nproc || true
- - . "./share/spack/setup-env.sh"
- spack --version
- spack arch
cdash:
build-group: Machine Learning MPS
url: https://cdash.spack.io
project: Spack Testing
site: Cloud Gitlab Infrastructure

View File

@@ -1060,7 +1060,7 @@ _spack_external_list() {
}
_spack_external_read_cray_manifest() {
SPACK_COMPREPLY="-h --help --file --directory --dry-run --fail-on-error"
SPACK_COMPREPLY="-h --help --file --directory --ignore-default-dir --dry-run --fail-on-error"
}
_spack_fetch() {

View File

@@ -7,16 +7,24 @@
class SimpleStandaloneTest(Package):
"""This package has a simple stand-alone test features."""
"""This package has simple stand-alone test features."""
homepage = "http://www.example.com/simple_test"
url = "http://www.unit-test-should-replace-this-url/simple_test-1.0.tar.gz"
version("1.0", md5="0123456789abcdef0123456789abcdef")
version("1.0", md5="123456789abcdef0123456789abcdefg")
version("0.9", md5="0123456789abcdef0123456789abcdef")
provides("standalone-test")
provides("standalone-ifc")
def test_echo(self):
"""simple stand-alone test"""
echo = which("echo")
echo("testing echo", output=str.split, error=str.split)
def test_skip(self):
"""simple skip test"""
if self.spec.satisfies("@1.0:"):
raise SkipTest("This test is not available from v1.0 on")
print("Ran test_skip")

View File

@@ -36,6 +36,40 @@
}
_versions = {
"23.04.1": {
"RHEL-7": (
"5e84daaf0510f73c235723112f9241bbd744ed89eb4f70f089bac05cf2aad2c4",
"https://developer.arm.com/-/media/Files/downloads/hpc/arm-compiler-for-linux/23-04-1/arm-compiler-for-linux_23.04.1_RHEL-7_aarch64.tar",
),
"RHEL-8": (
"6ec1f2c7338ea8a2831a7ff353ab44f87804f56716d1f3686576fb950c2f730f",
"https://developer.arm.com/-/media/Files/downloads/hpc/arm-compiler-for-linux/23-04-1/arm-compiler-for-linux_23.04.1_RHEL-8_aarch64.tar",
),
"RHEL-9": (
"dbd6493ea762b9b4c6cb54a76ad42e2223360882165ee3c223c1b7d1ebe927e2",
"https://developer.arm.com/-/media/Files/downloads/hpc/arm-compiler-for-linux/23-04-1/arm-compiler-for-linux_23.04.1_RHEL-9_aarch64.tar",
),
"SLES-15": (
"74c29890d47556114922c77e5a9797b055f8fe49f0c8665d17102465fca766b4",
"https://developer.arm.com/-/media/Files/downloads/hpc/arm-compiler-for-linux/23-04-1/arm-compiler-for-linux_23.04.1_SLES-15_aarch64.tar",
),
"Ubuntu-20.04": (
"78015ff5a246facfe45219a03a3774221b2f3b58db6fa3d9840d2574d103310c",
"https://developer.arm.com/-/media/Files/downloads/hpc/arm-compiler-for-linux/23-04-1/arm-compiler-for-linux_23.04.1_Ubuntu-20.04_aarch64.tar",
),
"Ubuntu-22.04": (
"19213db67aa11de44b617255e9e32efd294f930c6b6145192acf9ee331452ea6",
"https://developer.arm.com/-/media/Files/downloads/hpc/arm-compiler-for-linux/23-04-1/arm-compiler-for-linux_23.04.1_Ubuntu-22.04_aarch64.tar",
),
"AmazonLinux-2": (
"31ba559302a2889e5f0897f1c07563b20a5a8eaa671e623bef406b6490d1f4f2",
"https://developer.arm.com/-/media/Files/downloads/hpc/arm-compiler-for-linux/23-04-1/arm-compiler-for-linux_23.04.1_AmazonLinux-2_aarch64.tar",
),
"AmazonLinux-2023": (
"fa38f3d79775e9a537c59c8ba39c3b10505e895a3602bbd93c09445170db571f",
"https://developer.arm.com/-/media/Files/downloads/hpc/arm-compiler-for-linux/23-04-1/arm-compiler-for-linux_23.04.1_AmazonLinux-2023_aarch64.tar",
),
},
"23.04": {
"RHEL-7": (
"6526218484e87c195c1145f60536552fabbd25ba98c05cf096f54de18381a422",
@@ -72,23 +106,23 @@
},
"22.1": {
"RHEL-7": (
"bfbfef9099bf0e90480d48b3a1a741d583fc939284f869958e9c09e177098c73",
"367b9a60fa13b5fcf2fa787122c12d4bfb14d6f3e3e7b0460efc7627484a56a4",
"https://developer.arm.com/-/media/Files/downloads/hpc/arm-compiler-for-linux/22-1/arm-compiler-for-linux_22.1_RHEL-7_aarch64.tar",
),
"RHEL-8": (
"28116f6030c95ee8f69eba89023966974d6b44d4a686098f5c3c03e34f7495f6",
"f03ad3381a74df73a4c25baf5f1c15bd466cfd6286498c38b37ddeaa85c9965e",
"https://developer.arm.com/-/media/Files/downloads/hpc/arm-compiler-for-linux/22-1/arm-compiler-for-linux_22.1_RHEL-8_aarch64.tar",
),
"SLES-15": (
"6616dba1af4a73300ce822b645a0f1dfd363f507db5ea44cab1c6051ea388554",
"8a1c5bd570bd195982c342da8dafb7075f8f6b373b44539d4c810e69e8157c1f",
"https://developer.arm.com/-/media/Files/downloads/hpc/arm-compiler-for-linux/22-1/arm-compiler-for-linux_22.1_SLES-15_aarch64.tar",
),
"Ubuntu-18.04": (
"3b3dd6f416299fbd14fbaf0b1bddf7e2f4445a186de7a87e9efdae0b9d0dc3d5",
"4628599d389efcee07d0986cc3e791931e6a37eddb6e4b93c7846e17efe2148f",
"https://developer.arm.com/-/media/Files/downloads/hpc/arm-compiler-for-linux/22-1/arm-compiler-for-linux_22.1_Ubuntu-18.04_aarch64.tar",
),
"Ubuntu-20.04": (
"e6361a08f75817c8dbfb56dc72578810eaf5ffb65591215e394cb3ec6bdd9c10",
"20d950d16e6bb0b3a4c4f3c8ad393aae2356d4c998303b319da9e9833d4a6d12",
"https://developer.arm.com/-/media/Files/downloads/hpc/arm-compiler-for-linux/22-1/arm-compiler-for-linux_22.1_Ubuntu-20.04_aarch64.tar",
),
},
@@ -199,8 +233,8 @@ class Acfl(Package):
with a modern LLVM-based compiler framework.
"""
homepage = "https://developer.arm.com/tools-and-software/server-and-hpc/arm-allinea-studio"
url = "https://developer.arm.com/-/media/Files/downloads/hpc/arm-compiler-for-linux/22-1/arm-compiler-for-linux_22.1_Ubuntu-20.04_aarch64.tar"
homepage = "https://developer.arm.com/Tools%20and%20Software/Arm%20Compiler%20for%20Linux"
url = "https://developer.arm.com/-/media/Files/downloads/hpc/arm-compiler-for-linux/23-04-1/arm-compiler-for-linux_23.04.1_Ubuntu-22.04_aarch64.tar"
maintainers("annop-w")

View File

@@ -25,6 +25,7 @@ class Aluminum(CMakePackage, CudaPackage, ROCmPackage):
maintainers("bvanessen")
version("master", branch="master")
version("1.3.1", sha256="28ce0af6c6f29f97b7f19c5e45184bd2f8a0b1428f1e898b027d96d47cb74b0b")
version("1.3.0", sha256="d0442efbebfdfb89eec793ae65eceb8f1ba65afa9f2e48df009f81985a4c27e3")
version("1.2.3", sha256="9b214bdf30f9b7e8e017f83e6615db6be2631f5be3dd186205dbe3aa62f4018a")
version(

View File

@@ -21,6 +21,8 @@ class Amgx(CMakePackage, CudaPackage):
maintainers("js947")
version("2.3.0", sha256="419b3cd5bd3eb3469cbef79d64a8d19d5db88dd5cce809e49cac6fc4fc2edff1")
version("2.2.0", sha256="dac78516bb528135cad903399fe0093aa0904e304565ef2d3da4fae05eda7928")
version("2.1.0", sha256="6245112b768a1dc3486b2b3c049342e232eb6281a6021fffa8b20c11631f63cc")
version("2.0.1", sha256="6f9991f1836fbf4ba2114ce9f49febd0edc069a24f533bd94fd9aa9be72435a7")
version("2.0.0", sha256="8ec7ea8412be3de216fcf7243c4e2a8bcf76878e6865468e4238630a082a431b")

View File

@@ -31,6 +31,7 @@ class Aml(AutotoolsPackage):
# version string is generated from git tags, requires entire repo
version("master", branch="master", submodules=True, get_full_repo=True)
version("0.2.1", sha256="bae49e89ed0f2a2ad3547430e79b7e4c018d6228c6ed951a12d59afd0b35f71c")
version("0.2.0", sha256="2044a2f3f1d7a19827dd9c0726172b690189b4d3fe938656c4160c022468cc4a")
version(
"0.1.0",
@@ -45,10 +46,12 @@ class Aml(AutotoolsPackage):
variant("ze", default=False, description="Support for memory operations on top of Level Zero.")
variant("hip", default=False, description="Support for memory operations on top of HIP.")
variant("cuda", default=False, description="Support for memory operations on top of CUDA.")
variant("hwloc", default=False, description="Enable feature related to topology management")
variant("hwloc", default=True, description="Enable feature related to topology management")
variant(
"hip-platform",
values=disjoint_sets(("amd", "nvidia")),
values=("none", conditional("amd", when="+hip"), conditional("nvidia", when="+cuda")),
default="none",
multi=False,
description="HIP backend platform.",
)
@@ -68,6 +71,10 @@ class Aml(AutotoolsPackage):
depends_on("hwloc@2.1:", when="+hwloc")
# - ocl-icd >= 2.1 becomes a dependency when +opencl variant is used.
depends_on("ocl-icd@2.1:", when="+opencl")
# Required on master for autoconf pull the right pkg.m4 macros,
# and on other builds to detect dependencies
# Note: This does NOT work with pkg-config but requires pkgconf!
depends_on("pkgconf", type="build")
# when on master, we need all the autotools and extras to generate files.
with when("@master"):
@@ -75,9 +82,6 @@ class Aml(AutotoolsPackage):
depends_on("autoconf", type="build")
depends_on("automake", type="build")
depends_on("libtool", type="build")
# Required to have pkg config macros in configure.
# Note: This does NOT work with pkg-config but requires pkgconf!
depends_on("pkgconf", type="build")
# Required to generate AML version in configure.
depends_on("git", type="build")
@@ -91,9 +95,9 @@ def configure_args(self):
config_args.extend(self.with_or_without(b))
if self.spec.satisfies("%oneapi"):
config_args += ["--with-openmp-flags=-fiopenmp -fopenmp-targets=spir64"]
if "hip-platform=amd" in self.spec:
if self.spec.variants["hip-platform"].value == "amd":
config_args += ["--with-hip-platform=amd"]
if "hip-platform=nvidia" in self.spec:
if self.spec.variants["hip-platform"].value == "nvidia":
config_args += ["--with-hip-platform=nvidia"]
return config_args

View File

@@ -17,6 +17,7 @@ class AmqpCpp(CMakePackage):
maintainers("lpottier")
version("4.3.24", sha256="c3312f8af813cacabf6c257dfaf41bf9e66606bbf7d62d085a9b7da695355245")
version("4.3.19", sha256="ca29bb349c498948576a4604bed5fd3c27d87240b271a4441ccf04ba3797b31d")
variant(

View File

@@ -314,43 +314,20 @@ def cmake_args(self):
return args
# TODO: Replace this method and its 'get' use for cmake path with
# join_path(self.spec['cmake'].prefix.bin, 'cmake') once stand-alone
# tests can access build dependencies through self.spec['cmake'].
def cmake_bin(self, set=True):
"""(Hack) Set/get cmake dependency path."""
filepath = join_path(self.install_test_root, "cmake_bin_path.txt")
if set:
with open(filepath, "w") as out_file:
cmake_bin = join_path(self.spec["cmake"].prefix.bin, "cmake")
out_file.write("{0}\n".format(cmake_bin))
else:
with open(filepath, "r") as in_file:
return in_file.read().strip()
@run_after("build")
def setup_smoke_test(self):
"""Skip setup smoke tests for AMReX versions less than 21.12."""
def setup_standalone_test(self):
"""Setup stand-alonetests for AMReX versions from 21.12 on."""
if self.spec.satisfies("@:21.11"):
return
self.cache_extra_test_sources(["Tests"])
# TODO: Remove once self.spec['cmake'] is available here
self.cmake_bin(set=True)
def test(self):
"""Skip smoke tests for AMReX versions less than 21.12."""
def test_run_install_test(self):
"""build and run AmrCore test"""
if self.spec.satisfies("@:21.11"):
print("SKIPPED: Stand-alone tests not supported for this version of AMReX.")
return
raise SkipTest("Test is not supported for versions @:21.11")
"""Perform smoke tests on installed package."""
# TODO: Remove/replace once self.spec['cmake'] is available here
cmake_bin = self.cmake_bin(set=False)
args = []
args.append("-S./cache/amrex/Tests/SpackSmokeTest")
args = ["-S{0}".format(join_path(".", "cache", "amrex", "Tests", "SpackSmokeTest"))]
args.append("-DAMReX_ROOT=" + self.prefix)
if "+mpi" in self.spec:
args.append("-DMPI_C_COMPILER=" + self.spec["mpi"].mpicc)
@@ -360,15 +337,15 @@ def test(self):
args.append("-DCMAKE_CUDA_COMPILER=" + join_path(self.spec["cuda"].prefix.bin, "nvcc"))
args.extend(self.cmake_args())
self.run_test(cmake_bin, args, purpose="Configure with CMake")
cmake = which(self.spec["cmake"].prefix.bin.cmake)
cmake(*args)
self.run_test("make", [], purpose="Compile")
make = which("make")
make()
self.run_test(
"install_test",
["./cache/amrex/Tests/Amr/Advection_AmrCore/Exec/inputs-ci"],
["finalized"],
installed=False,
purpose="AMReX Stand-Alone Smoke Test -- AmrCore",
skip_missing=False,
install_test = which("install_test")
inputs_path = join_path(
".", "cache", "amrex", "Tests", "Amr", "Advection_AmrCore", "Exec", "inputs-ci"
)
out = install_test(inputs_path, output=str.split, error=str.split)
assert "finalized" in out

View File

@@ -2,6 +2,7 @@
# Spack Project Developers. See the top-level COPYRIGHT file for details.
#
# SPDX-License-Identifier: (Apache-2.0 OR MIT)
import os
from spack.package import *
@@ -17,7 +18,10 @@ class Arborx(CMakePackage, CudaPackage, ROCmPackage):
maintainers("aprokop")
test_requires_compiler = True
version("master", branch="master")
version("1.4", sha256="803a1018a6305cf3fea161172b3ada49537f59261279d91c2abbcce9492ee7af")
version("1.3", sha256="3f1e17f029a460ab99f8396e2772cec908eefc4bf3868c8828907624a2d0ce5d")
version("1.2", sha256="ed1939110b2330b7994dcbba649b100c241a2353ed2624e627a200a398096c20")
version("1.1", sha256="2b5f2d2d5cec57c52f470c2bf4f42621b40271f870b4f80cb57e52df1acd90ce")
@@ -61,7 +65,8 @@ class Arborx(CMakePackage, CudaPackage, ROCmPackage):
# Standalone Kokkos
depends_on("kokkos@3.1.00:", when="~trilinos")
depends_on("kokkos@3.4.00:", when="@1.2~trilinos")
depends_on("kokkos@3.6.00:", when="@1.3:~trilinos")
depends_on("kokkos@3.6.00:", when="@1.3~trilinos")
depends_on("kokkos@3.7.01:", when="@1.4:~trilinos")
for backend in kokkos_backends:
depends_on("kokkos+%s" % backend.lower(), when="~trilinos+%s" % backend.lower())
@@ -83,7 +88,8 @@ class Arborx(CMakePackage, CudaPackage, ROCmPackage):
depends_on("trilinos+kokkos", when="+trilinos")
depends_on("trilinos+openmp", when="+trilinos+openmp")
depends_on("trilinos@13.2.0:", when="@1.2+trilinos")
depends_on("trilinos@13.4.0:", when="@1.3:+trilinos")
depends_on("trilinos@13.4.0:", when="@1.3+trilinos")
depends_on("trilinos@14.0.0:", when="@1.4:+trilinos")
conflicts("~serial", when="+trilinos")
conflicts("+cuda", when="+trilinos")
@@ -117,18 +123,18 @@ def cached_tests_work_dir(self):
"""The working directory for cached test sources."""
return join_path(self.test_suite.current_test_cache_dir, self.examples_src_dir)
def build_tests(self):
"""Build the stand-alone/smoke test."""
def test_run_ctest(self):
"""run ctest tests on the installed package"""
arborx_dir = self.spec["arborx"].prefix
cmake_prefix_path = "-DCMAKE_PREFIX_PATH={0}".format(arborx_dir)
cmake_prefix_path = f"-DCMAKE_PREFIX_PATH={arborx_dir}"
if "+mpi" in self.spec:
cmake_prefix_path += ";{0}".format(self.spec["mpi"].prefix)
cmake_prefix_path += f";{self.spec['mpi'].prefix}"
cmake_args = [
".",
cmake_prefix_path,
"-DCMAKE_CXX_COMPILER={0}".format(self.compiler.cxx),
f"-DCMAKE_CXX_COMPILER={os.environ['CXX']}",
self.define(
"Kokkos_ROOT",
self.spec["kokkos"].prefix
@@ -136,23 +142,11 @@ def build_tests(self):
else self.spec["trilinos"].prefix,
),
]
cmake = which(self.spec["cmake"].prefix.bin.cmake)
make = which("make")
ctest = which("ctest")
self.run_test(
"cmake", cmake_args, purpose="test: calling cmake", work_dir=self.cached_tests_work_dir
)
self.run_test(
"make", [], purpose="test: building the tests", work_dir=self.cached_tests_work_dir
)
def test(self):
"""Perform stand-alone/smoke tests on the installed package."""
self.build_tests()
self.run_test(
"ctest",
["-V"],
purpose="test: running the tests",
installed=False,
work_dir=self.cached_tests_work_dir,
)
with working_dir(self.cached_tests_work_dir):
cmake(*cmake_args)
make()
ctest("-V")

View File

@@ -3,7 +3,6 @@
#
# SPDX-License-Identifier: (Apache-2.0 OR MIT)
import os
from spack.package import *
@@ -50,25 +49,17 @@ def cache_test_sources(self):
install test subdirectory for use during `spack test run`."""
self.cache_extra_test_sources(["test"])
def run_parallel_example_test(self):
"""Run stand alone test: parallel-simple"""
def test_run_parallel_example(self):
"""build and run parallel-simple"""
test_dir = join_path(self.test_suite.current_test_cache_dir, "test", "parallel")
if not os.path.exists(test_dir):
print("Skipping archer test")
return
raise SkipTest("Parallel test directory does not exist")
exe = "parallel-simple"
test_exe = "parallel-simple"
test_src = "{0}.c".format(test_exe)
with working_dir(test_dir):
clang = which("clang-archer")
clang("-o", test_exe, test_src)
self.run_test(
"clang-archer",
options=["-o", exe, "{0}".format(join_path(test_dir, "parallel-simple.c"))],
purpose="test: compile {0} example".format(exe),
work_dir=test_dir,
)
self.run_test(exe, purpose="test: run {0} example".format(exe), work_dir=test_dir)
def test(self):
self.run_parallel_example_test()
parallel_simple = which(test_exe)
parallel_simple()

View File

@@ -30,7 +30,7 @@ class Armcomputelibrary(SConsPackage):
url = "https://github.com/ARM-software/ComputeLibrary/archive/refs/tags/v23.02.zip"
git = "https://github.com/ARM-software/ComputeLibrary.git"
maintainers = ["annop-w"]
maintainers("annop-w")
version("23.02", sha256="bed1b24047ce00155e552204bc3983e86f46775414c554a34a7ece931d67ec62")
version("22.11", sha256="2f70f54d84390625222503ea38650c00c49d4b70bc86a6b9aeeebee9d243865f")

View File

@@ -36,6 +36,50 @@
}
_versions = {
"23.04.1_gcc-12.2": {
"RHEL-7": ("789cc093cb7e0d9294aff0fdf94b74987435a09cdff4c1b7118a03350548d03c"),
"RHEL-8": ("1b668baec6d3df2d48c5aedc70baa6a9b638983b94bf2cd58d378859a1da49f0"),
"RHEL-9": ("8a4d7aec2fe109aedcb9e8fdec566dc1ba3adcb3ba79e5c08b78b9717578db1c"),
"SLES-15": ("9c8aa114907d3ac9311301b991d732d535422e73516e0f337395637ce6a14c4a"),
"Ubuntu-20.04": ("c0a67afb6989b2bdb172052ff7d20a9e3197356714df06c862edd3ac71ef62f0"),
"Ubuntu-22.04": ("02e59d834c341164f5acf633555024bf614726aed8a85c1b0b46d024ce7840e2"),
"AmazonLinux-2": ("1cbb9a3d777353b42bfb5af327419c231640e7744ab46ab3a13e97802b1ce227"),
"AmazonLinux-2023": ("ee9b0b6ee0d881280e473390007020504a147b75bf6076d245832f101b01653e"),
},
"23.04.1_gcc-11.3": {
"RHEL-7": ("522e0269ca03d6251c10ee3aa8d94ceec4618887f47847defb535849434439a5"),
"RHEL-8": ("00f6fee4ba4bbff5be6d5ad34137973ab89505fc61a23d8e0c302b8860c70484"),
"RHEL-9": ("2402165267b25d07fd64b6d444b3120354dfd27594b11a1f082e85e76465e712"),
"SLES-15": ("a928539efe5af760fc86a009e3d87c9648e4d4e91490c13bc136a837591549c3"),
"Ubuntu-20.04": ("5754d8a6040bb6d0b1df326c9ab61901a72e5cc6d2d4195e52ca9271e55fb9f6"),
"Ubuntu-22.04": ("8af5aca7512a604b051a7808701a5c0285e92d88232138612d8caf973b7b1252"),
"AmazonLinux-2": ("8c710cb7bb21694130b915cc2650cfb85fb00cfca7e5fca9bbdec5c59a09c007"),
"AmazonLinux-2023": ("8b9c69a72c5b1ed5814e28ddd122ab09dbe5dd3585e4c395242ed590eea6ea79"),
},
"23.04.1_gcc-10.2": {
"RHEL-7": ("40d62517bd978516c308b2e57ab88772699fd8bb579d98bbc10ea397c0bab431"),
"RHEL-8": ("76554ea1f3d143f1236afea67e33eea74660f57718ef57c12986843da75e03d3"),
"SLES-15": ("63a6acb00300a9e85cfafd2141515ecb28dac82c1f441778d74e8add038724e2"),
"Ubuntu-20.04": ("7b6bcb8d1b9ca8be2d29e7620862fa961d965f479fa04873616ac8cc9bb399fc"),
"AmazonLinux-2": ("c6410ce2c109ae72568186bb7e162fcf4a9b05ea89da36d17db695b7df34f506"),
},
"23.04.1_gcc-9.3": {
"RHEL-7": ("782bbc27c77c230426086c226a78b8951501066d631947438e65ca51d33f24c3"),
"RHEL-8": ("8d3be6381b3e5032c5068a1d2e3d0e69c308a93496f85af42d43a579f9f7d9a3"),
"SLES-15": ("abe2245674a66ec93cff3c93dac7ae04a99c6c7e43e2733de214ec188e0d6cae"),
"Ubuntu-20.04": ("a7d385b901f2d1c07f243c816030ad19543e00667615dea1969ce16d29759271"),
"AmazonLinux-2": ("7113b6e2c795933ce8d18d468889168732d3a52a0df4a48ef4bf4497e891083a"),
},
"23.04.1_gcc-8.2": {
"RHEL-7": ("4e077813121c1cbd8abd1afe5348cafcce5b70f96affa725c7c2d8671e2d5eed"),
"RHEL-8": ("772aaab9304191e3a398cba2dec21ec22fd0abadcaf44d44f32114968bd3b59d"),
"SLES-15": ("33766ac351fb4628c6b39f16d6bdb310ad09d88b6a6f43740349405c960d4d21"),
"AmazonLinux-2": ("c215ed8de77b5144a60b6552f79ef2b59ccbfac5350f083ef135305ddf643a4e"),
},
"23.04.1_gcc-7.5": {
"RHEL-7": ("7b2239b2ce5315e1be14dbd8fe15aff2d3b07968d64b5c80c8ab57140b6a17a8"),
"AmazonLinux-2": ("a2e0f176df627c50f851924ac57994f582f63b0f3d42ad0b65c915ea04dc0467"),
},
"23.04_gcc-12.2": {
"RHEL-7": ("e159f84f14d885aa5e47ca17c16ef3d95128f834a655827bf6b48fcf8d6ec459"),
"RHEL-8": ("6ac1974ec9bd814d3a4eecf330cefd67cf2c878f026a8b04bc2928368948671a"),
@@ -225,6 +269,13 @@ class ArmplGcc(Package):
conflicts("target=ppc64:", msg="Only available on Aarch64")
conflicts("target=ppc64le:", msg="Only available on Aarch64")
conflicts("%gcc@:11", when="@23.04.1_gcc-12.2")
conflicts("%gcc@:10", when="@23.04.1_gcc-11.3")
conflicts("%gcc@:9", when="@23.04.1_gcc-10.2")
conflicts("%gcc@:8", when="@23.04.1_gcc-9.3")
conflicts("%gcc@:7", when="@23.04.1_gcc-8.2")
conflicts("%gcc@:6", when="@23.04.1_gcc-7.5")
conflicts("%gcc@:11", when="@23.04_gcc-12.2")
conflicts("%gcc@:10", when="@23.04_gcc-11.3")
conflicts("%gcc@:9", when="@23.04_gcc-10.2")

View File

@@ -14,17 +14,44 @@ class Asio(AutotoolsPackage):
homepage = "https://think-async.com/Asio/"
url = "https://github.com/chriskohlhoff/asio/archive/asio-1-18-2.tar.gz"
git = "https://github.com/chriskohlhoff/asio.git"
maintainers("msimberg")
maintainers("msimberg", "pauleonix")
version("1.21.0", sha256="5d2d2dcb7bfb39bff941cabbfc8c27ee322a495470bf0f3a7c5238648cf5e6a9")
# As uneven minor versions of asio are not considered stable, they wont be added anymore
version("1.28.0", sha256="226438b0798099ad2a202563a83571ce06dd13b570d8fded4840dbc1f97fa328")
version("1.26.0", sha256="935583f86825b7b212479277d03543e0f419a55677fa8cb73a79a927b858a72d")
version("1.24.0", sha256="cbcaaba0f66722787b1a7c33afe1befb3a012b5af3ad7da7ff0f6b8c9b7a8a5b")
version("1.22.2", sha256="985fc2d522f32d232d8386d2fa4ac6f2b25a0cad30495bf2e2e7997bce743f0b")
version("1.22.1", sha256="30cb54a5de5e465d10ec0c2026d6b5917f5e89fffabdbabeb1475846fc9a2cf0")
version("1.22.0", sha256="17bfd506f6d55c85a33603277a256b42ca5883bf290930040489ffeeed23724a")
version(
"1.21.0",
sha256="5d2d2dcb7bfb39bff941cabbfc8c27ee322a495470bf0f3a7c5238648cf5e6a9",
deprecated=True, # non-stable
)
version("1.20.0", sha256="34a8f07be6f54e3753874d46ecfa9b7ab7051c4e3f67103c52a33dfddaea48e6")
version("1.19.2", sha256="5ee191aee825dfb1325cbacf643d599b186de057c88464ea98f1bae5ba4ff47a")
version("1.19.1", sha256="2555e0a29256de5c77d6a34b14faefd28c76555e094ba0371acb0b91d483520e")
version("1.19.0", sha256="11bc0e22fcdfb3f0b77574ac33760a3592c0dac7e7eece7668b823c158243629")
version(
"1.19.2",
sha256="5ee191aee825dfb1325cbacf643d599b186de057c88464ea98f1bae5ba4ff47a",
deprecated=True, # non-stable
)
version(
"1.19.1",
sha256="2555e0a29256de5c77d6a34b14faefd28c76555e094ba0371acb0b91d483520e",
deprecated=True, # non-stable
)
version(
"1.19.0",
sha256="11bc0e22fcdfb3f0b77574ac33760a3592c0dac7e7eece7668b823c158243629",
deprecated=True, # non-stable
)
version("1.18.2", sha256="8d67133b89e0f8b212e9f82fdcf1c7b21a978d453811e2cd941c680e72c2ca32")
version("1.18.1", sha256="39c721b987b7a0d2fe2aee64310bd128cd8cc10f43481604d18cb2d8b342fd40")
version("1.18.0", sha256="820688d1e0387ff55194ae20036cbae0fb3c7d11b7c3f46492369723c01df96f")
version("1.17.0", sha256="46406a830f8334b3789e7352ed7309a39c7c30b685b0499d289eda4fd4ae2067")
version(
"1.17.0",
sha256="46406a830f8334b3789e7352ed7309a39c7c30b685b0499d289eda4fd4ae2067",
deprecated=True, # non-stable
)
version("1.16.1", sha256="e40bbd531530f08318b7c7d7e84e457176d8eae6f5ad2e3714dc27b9131ecd35")
version("1.16.0", sha256="c87410ea62de6245aa239b9ed2057edf01d7f66acc3f5e50add9a29343c87512")
@@ -32,6 +59,15 @@ class Asio(AutotoolsPackage):
depends_on("automake", type="build")
depends_on("m4", type="build")
depends_on("libtool", type="build")
depends_on("pkgconfig", type="build", when="@1.23:")
# See https://github.com/chriskohlhoff/asio/issues/944 and
# https://github.com/chriskohlhoff/asio/pull/995
conflicts(
"%gcc@12:",
when="@:1.22.0",
msg="asio v1.22.1 fixed missing includes necessary for gcc v12 and above",
)
stds = ("11", "14", "17", "2a")
variant(

View File

@@ -0,0 +1,22 @@
# Copyright 2013-2023 Lawrence Livermore National Security, LLC and other
# Spack Project Developers. See the top-level COPYRIGHT file for details.
#
# SPDX-License-Identifier: (Apache-2.0 OR MIT)
from spack.package import *
class Azcopy(Package):
"""AzCopy is a command-line utility that you can use to copy data to and from containers and
file shares in Azure Storage accounts.
"""
homepage = "https://github.com/Azure/azure-storage-azcopy"
url = "https://github.com/Azure/azure-storage-azcopy/archive/refs/tags/v10.18.1.tar.gz"
version("10.18.1", sha256="80292625d7f1a6fc41688c5948b3a20cfdae872464d37d831e20999430819c3f")
depends_on("go", type="build")
def install(self, spec, prefix):
go("build", "-o", prefix.bin.azcopy)

View File

@@ -25,7 +25,8 @@ class Babelstream(CMakePackage, CudaPackage, ROCmPackage):
version("4.0", sha256="a9cd39277fb15d977d468435eb9b894f79f468233f0131509aa540ffda4f5953")
version("main", branch="main")
version("develop", branch="develop")
maintainers = ["tomdeakin", "kaanolgu" "tom91136", "robj0nes"]
maintainers("tomdeakin", "kaanolgu", "tom91136", "robj0nes")
# Languages
# Also supported variants are cuda and rocm (for HIP)

View File

@@ -12,8 +12,6 @@ class Bart(MakefilePackage, CudaPackage):
homepage = "https://mrirecon.github.io/bart/"
url = "https://github.com/mrirecon/bart/archive/v0.5.00.tar.gz"
maintainers("glennpj")
version("0.7.00", sha256="a16afc4b632c703d95b5c34e47acd82fafc19f51f9aff442373eecfef08bfc41")
version("0.6.00", sha256="dbbd33d1e3ed3324fe21f90a3b62cb51765fe369f21df100b46a32004928f18d")
version("0.5.00", sha256="30eedcda0f0ef3808157542e0d67df5be49ee41e4f41487af5c850632788f643")

View File

@@ -12,7 +12,10 @@ class Bbcp(Package):
homepage = "https://www.slac.stanford.edu/~abh/bbcp/"
git = "https://www.slac.stanford.edu/~abh/bbcp/bbcp.git"
version("master", branch="master")
maintainers("vanderwb")
# Stanford's git server does not support "smart https" shallow clones
version("master", branch="master", get_full_repo=True)
depends_on("zlib")
depends_on("openssl")

View File

@@ -17,6 +17,13 @@ class Beast2(Package):
homepage = "http://beast2.org/"
url = "https://github.com/CompEvol/beast2/releases/download/v2.6.4/BEAST.v2.6.4.Linux.tgz"
maintainers("snehring")
version(
"2.7.4",
sha256="f5086c74a0337190ae3459ef018468fc6b2eff68ae2b53fb5c96eb7b5df84004",
url="https://github.com/CompEvol/beast2/releases/download/v2.7.4/BEAST.v2.7.4.Linux.x86.tgz",
)
version("2.6.7", sha256="05dcc619c2e10163f2c1089ec66149f6e53ec5a0583cd2cb8ffdccbbdb1d8183")
version("2.6.4", sha256="4f80e2920eb9d87f3e9f64433119774dc67aca390fbd13dd480f852e3f8701a4")
version("2.6.3", sha256="8899277b0d7124ab04dc512444d45f0f1a13505f3ce641e1f117098be3e2e20d")
@@ -24,6 +31,19 @@ class Beast2(Package):
version("2.4.6", sha256="84029c5680cc22f95bef644824130090f5f12d3d7f48d45cb4efc8e1d6b75e93")
depends_on("java")
depends_on("java@17:", when="@2.7.0:")
depends_on("javafx", when="@2.7.0:")
def patch(self):
# handle javafx stuff
if self.spec.satisfies("@2.7.0:"):
javafx = "--module-path {}".format(self.spec["javafx"].prefix.lib)
modules = "--add-modules javafx.controls"
with working_dir("bin"):
for i in find(".", "*"):
filter_file(
r"(beast\.pkgmgmt.*\b)|(viz.*\b)", "{0} {1} \\1".format(javafx, modules), i
)
def setup_run_environment(self, env):
env.set("BEAST", self.prefix)
@@ -33,4 +53,8 @@ def install(self, spec, prefix):
install_tree("examples", join_path(self.prefix, "examples"))
install_tree("images", join_path(self.prefix, "images"))
install_tree("lib", prefix.lib)
install_tree("templates", join_path(self.prefix, "templates"))
if spec.satisfies("@:2.6.4"):
template_dir = "templates"
else:
template_dir = "fxtemplates"
install_tree(template_dir, join_path(self.prefix, template_dir))

View File

@@ -16,6 +16,8 @@ class Bedops(MakefilePackage):
url = "https://github.com/bedops/bedops/archive/v2.4.39.tar.gz"
maintainers("jacorvar")
version("2.4.41", sha256="3b868c820d59dd38372417efc31e9be3fbdca8cf0a6b39f13fb2b822607d6194")
version("2.4.40", sha256="8c01db76669dc58c595e2e1b9bdb6d462f3363fc569b15c460a63a63b8b6bf30")
version("2.4.39", sha256="f8bae10c6e1ccfb873be13446c67fc3a54658515fb5071663883f788fc0e4912")
version("2.4.35", sha256="da0265cf55ef5094834318f1ea4763d7a3ce52a6900e74f532dd7d3088c191fa")

View File

@@ -2,6 +2,7 @@
# Spack Project Developers. See the top-level COPYRIGHT file for details.
#
# SPDX-License-Identifier: (Apache-2.0 OR MIT)
import os
import re
from spack.package import *
@@ -93,25 +94,40 @@ def configure_args(self):
return config_args
def test(self):
"""Perform smoke tests on the installed package binaries."""
exes = [
"db_checkpoint",
"db_deadlock",
"db_dump",
"db_load",
"db_printlog",
"db_stat",
"db_upgrade",
"db_verify",
]
for exe in exes:
reason = "test version of {0} is {1}".format(exe, self.spec.version)
self.run_test(
exe,
["-V"],
[self.spec.version.string],
installed=True,
purpose=reason,
skip_missing=True,
)
def check_exe_version(self, exe):
"""Check that the installed executable prints the correct version."""
installed_exe = join_path(self.prefix.bin, exe)
if not os.path.exists(installed_exe):
raise SkipTest(f"{exe} is not installed")
exe = which(installed_exe)
out = exe("-V", output=str.split, error=str.split)
assert self.spec.version.string in out
def test_db_checkpoint(self):
"""check db_checkpoint version"""
self.check_exe_version("db_checkpoint")
def test_db_deadlock(self):
"""check db_deadlock version"""
self.check_exe_version("db_deadlock")
def test_db_dump(self):
"""check db_dump version"""
self.check_exe_version("db_dump")
def test_db_load(self):
"""check db_load version"""
self.check_exe_version("db_load")
def test_db_stat(self):
"""check db_stat version"""
self.check_exe_version("db_stat")
def test_db_upgrade(self):
"""check db_upgrade version"""
self.check_exe_version("db_upgrade")
def test_db_verify(self):
"""check db_verify version"""
self.check_exe_version("db_verify")

View File

@@ -2,6 +2,7 @@
# Spack Project Developers. See the top-level COPYRIGHT file for details.
#
# SPDX-License-Identifier: (Apache-2.0 OR MIT)
import os
import re
import spack.build_systems.autotools
@@ -192,31 +193,36 @@ def flag_handler(self, name, flags):
iflags.append("-Wl,-z,notext")
return (iflags, None, flags)
def test(self):
spec_vers = str(self.spec.version)
def test_binaries(self):
binaries = [
"ar",
"c++filt",
"coffdump",
"dlltool",
"elfedit",
"gprof",
"ld",
"nm",
"objdump",
"ranlib",
"readelf",
"size",
"strings",
]
checks = {
"ar": spec_vers,
"c++filt": spec_vers,
"coffdump": spec_vers,
"dlltool": spec_vers,
"elfedit": spec_vers,
"gprof": spec_vers,
"ld": spec_vers,
"nm": spec_vers,
"objdump": spec_vers,
"ranlib": spec_vers,
"readelf": spec_vers,
"size": spec_vers,
"strings": spec_vers,
}
# Since versions can have mixed separator characters after the minor
# version, just check the first two components
version = str(self.spec.version.up_to(2))
for _bin in binaries:
reason = "checking version of {0} is {1}".format(_bin, version)
with test_part(self, "test_binaries_{0}".format(_bin), purpose=reason):
installed_exe = join_path(self.prefix.bin, _bin)
if not os.path.exists(installed_exe):
raise SkipTest("{0} is not installed".format(_bin))
for exe in checks:
expected = checks[exe]
reason = "test: ensuring version of {0} is {1}".format(exe, expected)
self.run_test(
exe, "--version", expected, installed=True, purpose=reason, skip_missing=True
)
exe = which(installed_exe)
out = exe("--version", output=str.split, error=str.split)
assert version in out
class AutotoolsBuilder(spack.build_systems.autotools.AutotoolsBuilder):

View File

@@ -30,25 +30,16 @@ def configure_args(self):
args = ["--with-libmaus2={0}".format(self.spec["libmaus2"].prefix)]
return args
def _fix_shortsort(self):
"""Fix the testshortsort.sh file copied during installation."""
test_dir = join_path(self.install_test_root, self.test_src_dir)
filter_file("../src/", "", join_path(test_dir, "testshortsort.sh"))
@run_after("install")
def cache_test_sources(self):
"""Copy the test source files after the package is installed to an
install test subdirectory for use during `spack test run`."""
self.cache_extra_test_sources(self.test_src_dir)
self._fix_shortsort()
def test(self):
"""Perform stand-alone/smoke test on installed package."""
def test_short_sort(self):
"""run testshortsort.sh to check alignments sorted by coordinate"""
test_dir = join_path(self.test_suite.current_test_cache_dir, self.test_src_dir)
self.run_test(
"sh",
["testshortsort.sh"],
expected="Alignments sorted by coordinate.",
purpose="test: checking alignments",
work_dir=test_dir,
)
with working_dir(test_dir):
sh = which("sh")
out = sh("testshortsort.sh", output=str.split, error=str.split)
assert "Alignments sorted by coordinate." in out

View File

@@ -5,8 +5,6 @@
import os
from llnl.util import tty
from spack.package import *
@@ -26,6 +24,8 @@ class Bolt(CMakePackage):
git = "https://github.com/pmodels/bolt.git"
maintainers("shintaro-iwasaki")
test_requires_compiler = True
tags = ["e4s"]
version("main", branch="main")
@@ -33,8 +33,6 @@ class Bolt(CMakePackage):
version("1.0.1", sha256="769e30dfc4042cee7ebbdadd23cf08796c03bcd8b335f516dc8cbc3f8adfa597")
version("1.0", sha256="1c0d2f75597485ca36335d313a73736594e75c8a36123c5a6f54d01b5ba5c384")
test_requires_compiler = True
depends_on("argobots")
depends_on("autoconf", type="build")
depends_on("automake", type="build")
@@ -55,20 +53,20 @@ def cache_test_sources(self):
install test subdirectory for use during `spack test run`."""
self.cache_extra_test_sources(["examples"])
def run_sample_nested_example(self):
"""Run stand alone test: sample_nested"""
def test_sample_nested_example(self):
"""build and run sample_nested"""
test_dir = join_path(self.test_suite.current_test_cache_dir, "examples")
exe = "sample_nested"
source_file = "sample_nested.c"
source_file = "{0}.c".format(exe)
if not os.path.isfile(join_path(test_dir, source_file)):
tty.warn("Skipping bolt test:" "{0} does not exist".format(source_file))
return
path = find_required_file(
self.test_suite.current_test_cache_dir, source_file, expected=1, recursive=True
)
self.run_test(
exe=os.environ["CXX"],
options=[
test_dir = os.path.dirname(path)
with working_dir(test_dir):
cxx = which(os.environ["CXX"])
cxx(
"-L{0}".format(self.prefix.lib),
"-I{0}".format(self.prefix.include),
"{0}".format(join_path(test_dir, source_file)),
@@ -76,12 +74,7 @@ def run_sample_nested_example(self):
exe,
"-lomp",
"-lbolt",
],
purpose="test: compile {0} example".format(exe),
work_dir=test_dir,
)
)
self.run_test(exe, purpose="test: run {0} example".format(exe), work_dir=test_dir)
def test(self):
self.run_sample_nested_example()
sample_nested = which(exe)
sample_nested()

View File

@@ -14,7 +14,7 @@ class CRaft(AutotoolsPackage):
git = "https://github.com/canonical/raft.git"
url = "https://github.com/canonical/raft/archive/refs/tags/v0.17.1.tar.gz"
maintainers = ["mdorier"]
maintainers("mdorier")
version("master", branch="master")
version("0.17.1", sha256="e31c7fafbdd5f94913161c5d64341a203364e512524b47295c97a91e83c4198b")

View File

@@ -13,12 +13,19 @@ class Catch2(CMakePackage):
homepage = "https://github.com/catchorg/Catch2"
url = "https://github.com/catchorg/Catch2/archive/v2.13.10.tar.gz"
git = "https://github.com/catchorg/Catch2.git"
maintainers("ax3l", "AndrewGaspar")
maintainers("ax3l")
# In-Development
version("develop", branch="devel")
# Releases
version("3.3.2", sha256="8361907f4d9bff3ae7c1edb027f813659f793053c99b67837a0c0375f065bae2")
version("3.3.1", sha256="d90351cdc55421f640c553cfc0875a8c834428679444e8062e9187d05b18aace")
version("3.3.0", sha256="fe2f29a54ca775c2dd04bb97ffb79d398e6210e3caa174348b5cd3b7e4ca887d")
version("3.2.1", sha256="4613d3e8142b672159fcae252a4860d72c8cf8e2df5043b1ae3541db9ef5d73c")
version("3.2.0", sha256="feee04647e28ac3cbeff46cb42abc8ee2d8d5f646d36e3fb3ba274b8c69a58ea")
version("3.1.1", sha256="2106bccfec18c8ce673623d56780220e38527dd8f283ccba26aa4b8758737d0e")
version("3.1.0", sha256="c252b2d9537e18046d8b82535069d2567f77043f8e644acf9a9fffc22ea6e6f7")
version("3.0.1", sha256="8c4173c68ae7da1b5b505194a0c2d6f1b2aef4ec1e3e7463bde451f26bbaf4e7")
version(
"3.0.0-preview4", sha256="2458d47d923b65ab611656cb7669d1810bcc4faa62e4c054a7405b1914cd4aee"
@@ -27,6 +34,7 @@ class Catch2(CMakePackage):
"3.0.0-preview3", sha256="06a4f903858f21c553e988f8b76c9c6915d1f95f95512d6a58c421e02a2c4975"
)
version("2.13.10", sha256="d54a712b7b1d7708bc7a819a8e6e47b2fde9536f487b89ccbca295072a7d9943")
version("2.13.9", sha256="06dbc7620e3b96c2b69d57bf337028bf245a211b3cddb843835bfe258f427a52")
version("2.13.8", sha256="b9b592bd743c09f13ee4bf35fc30eeee2748963184f6bea836b146e6cc2a585a")
version("2.13.7", sha256="3cdb4138a072e4c0290034fe22d9f0a80d3bcfb8d7a8a5c49ad75d3a5da24fae")
version("2.13.6", sha256="48dfbb77b9193653e4e72df9633d2e0383b9b625a47060759668480fdf24fbd4")

View File

@@ -18,6 +18,7 @@ class Cbc(AutotoolsPackage):
depends_on("osi")
depends_on("cgl")
version("2.10.9", sha256="96d02593b01fd1460d421f002734384e4eb1e93ebe1fb3570dc2b7600f20a27e")
version("2.10.8", sha256="8525abb541ee1b8e6ff03b00411b66e98bbc58f95be1aefd49d2bca571be2eaf")
version("2.10.5", sha256="cc44c1950ff4615e7791d7e03ea34318ca001d3cac6dc3f7f5ee392459ce6719")

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