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277 Commits

Author SHA1 Message Date
Wouter Deconinck
35ae2743d9 cans: update homepage and url (#46488) 2024-09-21 08:45:29 +02:00
Wouter Deconinck
cd3bd453d3 chatterbug: update homepage and git (#46489) 2024-09-21 08:44:49 +02:00
Stephen Herbener
fc6cd7c51f Introduce the bufr_query library from NOAA-EMC (#45920)
* Introduce the bufr_query library from NOAA-EMC (#461)

This PR adds in a new package.py script for the new bufr_query library from NOAA-EMC. This is being used by JEDI and other applications.

* Add explicit build dependency spec to the pybind11 depends_on spec

Co-authored-by: Wouter Deconinck <wdconinc@gmail.com>

* Convert patch file to the URL form which pulls the changes from github.

Co-authored-by: Wouter Deconinck <wdconinc@gmail.com>

* Added new version (0.0.3) and removed obsolete site-packages.patch file

---------

Co-authored-by: Wouter Deconinck <wdconinc@gmail.com>
2024-09-20 15:46:42 -06:00
John W. Parent
cfee88a5bb Docs/Windows: Clarify supported shells and caveats (#46381)
While the existing getting started guide does in fact reference the
powershell support, it's a footnote and easily missed. This PR adds
explicit, upfront mentions of the powershell support. Additionally
this PR adds notes about some of the issues with certain components
of the spec syntax when using CMD.
2024-09-20 11:55:17 -07:00
Harmen Stoppels
7711730f2c spack.modules: move get_module up (#46428) 2024-09-20 19:30:09 +02:00
Massimiliano Culpo
14e8902854 gcc: simplify setup_run_environment (#46505)
If the spec is external, it has extra attributes. If not, we know
which names are used. In both cases we don't need to search again
for executables.

Signed-off-by: Massimiliano Culpo <massimiliano.culpo@gmail.com>
2024-09-20 18:30:43 +02:00
eugeneswalker
97961555dc petsc@3.21 +rocm: add patches for rocm 6+ (#46486) 2024-09-20 18:12:56 +02:00
Wouter Deconinck
51df7e088a gptune: don't make git attribute an Executable (#46492)
* gptune: don't make `git` attribute an Executable

* gptune: fine, I'll fix style myself then
2024-09-20 11:02:22 -05:00
Massimiliano Culpo
b28583bc58 Remove code from Compiler that is not used anymore (#45982)
Signed-off-by: Massimiliano Culpo <massimiliano.culpo@gmail.com>
2024-09-20 10:00:34 +02:00
Tamara Dahlgren
f9f6f094c3 do_install: post #46423 cleanup (#46496) 2024-09-20 09:45:31 +02:00
Jon Rood
e780a83ac6 amr-wind: use CMAKE_CUDA_ARCHITECTURES (#46442) 2024-09-19 17:58:57 -06:00
Adam J. Stewart
7f57a85514 py-pyogrio: add missing GDAL dependency (#46458) 2024-09-19 18:25:33 -05:00
Harmen Stoppels
e4927b35d1 package_base: break dependency on installer (#46423)
Removes `spack.package_base.PackageBase.do_{install,deprecate}` in favor of
`spack.installer.PackageInstaller.install` and `spack.installer.deprecate` resp.

That drops a dependency of `spack.package_base` on `spack.installer`, which is
necessary to get rid of circular dependencies in Spack.

Also change the signature of `PackageInstaller.__init__` from taking a dict as
positional argument, to an explicit list of keyword arguments.
2024-09-19 23:25:36 +02:00
etiennemlb
098ad7ffc0 quantum-espresso: ensure no space in HDF5 lib variable (#46089)
* Ensure no space in HDF5 lib variable.
* QE patch fix
2024-09-19 14:00:34 -07:00
Harmen Stoppels
db7aece186 require spec in develop entry (#46485) 2024-09-19 20:11:22 +02:00
Ivan Maidanski
0e9f131b44 bdw-gc: add v8.2.8 (#46286) 2024-09-19 18:48:34 +02:00
Harmen Stoppels
1d18f571ae url join: fix oci scheme (#46483)
* url.py: also special case oci scheme in join

* avoid fetching keys from oci mirror
2024-09-19 16:06:44 +02:00
Harmen Stoppels
586360a8fe Revert "For "when:" and install_environment.json: Support fully qualified hos…" (#46478)
This reverts commit 6b0011c8f1.

It caused a major performance penalty in unit test time on macOS (about 30 minutes).
2024-09-19 15:34:12 +02:00
Harmen Stoppels
b1db22d406 run-unit-tests: no xdist if coverage (#46480)
xdist only slows down unit tests under coverage
2024-09-19 14:01:33 +02:00
Harmen Stoppels
7395656663 docs: refer to upstreams.yaml in chain.rst title (#46475) 2024-09-19 13:08:05 +02:00
Harmen Stoppels
d0b736607b spack.util.url: fix join breakage in python 3.12.6 (#46453) 2024-09-19 12:29:56 +02:00
Harmen Stoppels
fe5d7881f5 avoid multiprocessing in tests (#46439)
- silences a few pytest warnings related to forking in xdist
- speeds up a few tests / avoids possible oversubscription in xdist
2024-09-19 10:34:23 +02:00
Harmen Stoppels
28e3295fb0 Add GHA for circular imports regressions (#46436) 2024-09-18 09:07:23 +02:00
Massimiliano Culpo
314a3fbe77 Bump archspec to latest commit (#46445)
This should fix an issue with Neoverse XX detection

Signed-off-by: Massimiliano Culpo <massimiliano.culpo@gmail.com>
2024-09-18 00:54:39 +00:00
Auriane R.
6df831ef00 Replace if ... in spec with spec.satisfies in h* and i* packages (#46387)
* Replace if ... in spec with spec.satisfies in h* packages

* Replace if ... in spec with spec.satisfies in i* packages
2024-09-17 12:39:22 -05:00
Todd Gamblin
9818002219 variants: Unify metadata dictionaries to index by when (#44425)
Continuing the work started in #40326, his changes the structure
of Variant metadata on Packages from a single variant definition
per name with a list of `when` specs:

```
name: (Variant, [when_spec, ...])
```

to a Variant definition per `when_spec` per name:

```
when_spec: { name: Variant }
```

With this change, everything on a package *except* versions is
 keyed by `when` spec. This:

1. makes things consistent, in that conditional things are (nearly)
   all modeled in the same way; and

2. fixes an issue where we would lose information about multiple
   variant definitions in a package (see #38302). We can now have,
   e.g., different defaults for the same variant in different
   versions of a package.

Some notes:

1. This required some pretty deep changes to the solver. Previously,
   the solver's job was to select value(s) for a single variant definition
   per name per package. Now, the solver needs to:

   a. Determine which variant definition should be used for a given node,
      which can depend on the node's version, compiler, target, other variants, etc.
   b. Select valid value(s) for variants for each node based on the selected
      variant definition.

   When multiple variant definitions are enabled via their `when=` clause, we will
   always prefer the *last* matching definition, by declaration order in packages. This
   is implemented by adding a `precedence` to each variant at definition time, and we
   ensure they are added to the solver in order of precedence.

   This has the effect that variant definitions from derived classes are preferred over
   definitions from superclasses, and the last definition within the same class sticks.
   This matches python semantics. Some examples:

    ```python
    class ROCmPackage(PackageBase):
        variant("amdgpu_target", ..., when="+rocm")

    class Hipblas(ROCmPackage):
        variant("amdgpu_target", ...)
    ```

   The global variant in `hipblas` will always supersede the `when="+rocm"` variant in
   `ROCmPackage`. If `hipblas`'s variant was also conditional on `+rocm` (as it probably
   should be), we would again filter out the definition from `ROCmPackage` because it
   could never be activated. If you instead have:

    ```python
    class ROCmPackage(PackageBase):
        variant("amdgpu_target", ..., when="+rocm")

    class Hipblas(ROCmPackage):
        variant("amdgpu_target", ..., when="+rocm+foo")
    ```

   The variant on `hipblas` will win for `+rocm+foo` but the one on `ROCmPackage` will
   win with `rocm~foo`.

   So, *if* we can statically determine if a variant is overridden, we filter it out.
   This isn't strictly necessary, as the solver can handle many definitions fine, but
   this reduces the complexity of the problem instance presented to `clingo`, and
   simplifies output in `spack info` for derived packages. e.g., `spack info hipblas`
   now shows only one definition of `amdgpu_target` where before it showed two, one of
   which would never be used.

2. Nearly all access to the `variants` dictionary on packages has been refactored to
   use the following class methods on `PackageBase`:
    * `variant_names(cls) -> List[str]`: get all variant names for a package
    * `has_variant(cls, name) -> bool`: whether a package has a variant with a given name
    * `variant_definitions(cls, name: str) -> List[Tuple[Spec, Variant]]`: all definitions
      of variant `name` that are possible, along with their `when` specs.
    * `variant_items() -> `: iterate over `pkg.variants.items()`, with impossible variants
      filtered out.

   Consolidating to these methods seems to simplify the code a lot.

3. The solver does a lot more validation on variant values at setup time now. In
   particular, it checks whether a variant value on a spec is valid given the other
   constraints on that spec. This allowed us to remove the crufty logic in
   `update_variant_validate`, which was needed because we previously didn't *know* after
   a solve which variant definition had been used. Now, variant values from solves are
   constructed strictly based on which variant definition was selected -- no more
   heuristics.

4. The same prevalidation can now be done in package audits, and you can run:

   ```
   spack audit packages --strict-variants
   ```

   This turns up around 18 different places where a variant specification isn't valid
   given the conditions on variant definitions in packages. I haven't fixed those here
   but will open a separate PR to iterate on them. I plan to make strict checking the
   defaults once all existing package issues are resolved. It's not clear to me that
   strict checking should be the default for the prevalidation done at solve time.

There are a few other changes here that might be of interest:

  1. The `generator` variant in `CMakePackage` is now only defined when `build_system=cmake`.
  2. `spack info` has been updated to support the new metadata layout.
  3.  split out variant propagation into its own `.lp` file in the `solver` code.
  4. Add better typing and clean up code for variant types in `variant.py`.
  5. Add tests for new variant behavior.
2024-09-17 09:59:05 -07:00
Harmen Stoppels
1768b923f1 cloud_pipelines/.gitlab-ci.yml: run spack arch (#46437) 2024-09-17 17:07:26 +02:00
Harmen Stoppels
aa6651fe27 drop main dep from build_environment/subprocess_context (#46426) 2024-09-17 17:06:16 +02:00
Harmen Stoppels
3ded2fc9c5 untangle spack.config / spack.util.cpus & spack.spec (#46427) 2024-09-17 17:06:00 +02:00
Harmen Stoppels
623c5a4d24 package_base.py: do not depend on spack.environment (#46424) 2024-09-17 14:43:03 +02:00
Harmen Stoppels
673565aefe imports: automate missing imports (#46410) 2024-09-17 07:45:59 +02:00
Todd Gamblin
930e711771 coverage: only upload to codecov once (#46385)
Historically, every PR, push, etc. to Spack generates a bunch of jobs, each of which
uploads its coverage report to codecov independently. This means that we get annoying
partial coverage numbers when only a few of the jobs have finished, and frequently
codecov is bad at understanding when to merge reports for a given PR. The numbers of the
site can be weird as a result.

This restructures our coverage handling so that we do all the merging ourselves and
upload exactly one report per GitHub actions workflow. In practice, that means that
every push to every PR will get exactly one coverage report and exactly one coverage
number reported. I think this will at least partially restore peoples' faith in what
codecov is telling them, and it might even make codecov handle Spack a bit better, since
this reduces the report burden by ~7x.

- [x] test and audit jobs now upload artifacts for coverage
- [x] add a new job that downloads artifacts and merges coverage reports together
- [x] set `paths` section of `pyproject.toml` so that cross-platform clone locations are merged
- [x] upload to codecov once, at the end of the workflow

Signed-off-by: Todd Gamblin <tgamblin@llnl.gov>
2024-09-16 19:18:21 -07:00
Satish Balay
b1905186a6 kokkos, kokkos-kernels, kokkos-nvcc-wrapper: add v4.4.01 (#46377)
* kokkos, kokkos-kernels, kokkos-nvcc-wrapper: add v4.4.01

* trilinos: update @[master,develop] dependency on kokkos

==> Error: InstallError: For Trilinos@[master,develop], ^kokkos version in spec must match version in Trilinos source code. Specify ^kokkos@4.4.01 for trilinos@[master,develop] instead of ^kokkos@4.4.00.
2024-09-16 13:53:00 -06:00
Richard Berger
176b7f8854 lammps-example-plugin: add new versions, fix bug (#46331) 2024-09-16 12:15:02 -07:00
Wouter Deconinck
0cb4db950f nghttp2: add v1.62.1, v1.63.0 (#46358) 2024-09-16 12:13:24 -07:00
Wouter Deconinck
bba66f9dae libxslt: add through v1.1.42 (now at gnome.org) (#46364)
* libxslt: add through v1.1.42 (now at gnome.org)
* libxslt: add v1.1.35 (apparently forgotten)
2024-09-16 12:09:47 -07:00
Wouter Deconinck
9c222aee67 libedit: add v3.1-20240517, v3.1-20240808 (#46366) 2024-09-16 12:03:39 -07:00
Jen Herting
fcc28d72e8 [py-httpx] Dependency fixes and simplifications (#46367) 2024-09-16 12:02:22 -07:00
Satish Balay
8bc897cee1 hipfft: update @master dependency wrt rocfft (#46376)
* add master branch to rocfft and ensure its dependency on that branch for hip and rocm-cmake
* ensure hipfft@master uses rocm-cmake@master
2024-09-16 12:00:26 -07:00
David Collins
2b70f8367c Use the correct variable in configure() in bash package.py (#46384) 2024-09-16 11:44:27 -07:00
Teague Sterling
a9a23f4565 duckdb: add v1.1.0, deprecate v0.10.0 (#46391)
* duckdb: add v1.0.0, v0.10.3
* Adding issue reference
* duckdb: add v1.1.0

---------

Signed-off-by: Teague Sterling <teaguesterling@gmail.com>
2024-09-16 11:42:27 -07:00
Andrey Prokopenko
0d86ecf122 arborx: add 1.7 (#46392) 2024-09-16 11:40:39 -07:00
Wouter Deconinck
654d6f1397 qt: add v5.15.15 (#46405) 2024-09-16 12:38:13 -06:00
kwryankrattiger
ade9c8da0e Revert "allow failure for cray-sles (#46411)" (#46413)
This reverts commit 576251f0da.
2024-09-16 19:42:24 +02:00
Greg Becker
f4f59b7f18 openblas and others: change flag_handler idiom to respect incoming flags (#46211)
* openblas: fix flag_handler to respect flags

* arpack-ng: fix flag_handler to respect flags

* czmq: fix flag_handler to respect flags

* flex: fix flag_handler to respect flags

* json-c: fix flag_handler to respect flags

* mpifileutils: fix flag_handler to respect flags

* netlib-scalapack: fix flag_handler to respect flags

* sed: fix flag_handler to respect flags

---------

Co-authored-by: Harmen Stoppels <me@harmenstoppels.nl>
2024-09-16 09:14:24 -07:00
Massimiliano Culpo
61d6c5486c Add repositories for "requirements" and "flag mixing" unit tests (#46412) 2024-09-16 17:59:35 +02:00
Harmen Stoppels
576251f0da allow failure for cray-sles (#46411) 2024-09-16 17:17:36 +02:00
Harmen Stoppels
55e0ef1e64 Add missing & remove redundant imports (#46407) 2024-09-16 12:54:16 +02:00
Harmen Stoppels
ef0e54726d freexl: add missing deps (#46330) 2024-09-16 12:12:38 +02:00
Harmen Stoppels
8225b18985 Fix a few circular deps (#46373) 2024-09-16 09:15:51 +02:00
Satish Balay
02320b18f3 petsc, mfem: update rocm dependency (#46324)
* petsc: configure requires rocm-core/rocm_version.h to detect ROCM_VERSION_MAJOR.ROCM_VERSION_MINOR.ROCM_VERSION_PATCH

* mfem: add dependency on rocprim (as needed via petsc dependency)

In file included from linalg/petsc.cpp:19:
In file included from linalg/linalg.hpp:65:
In file included from linalg/petsc.hpp:48:
In file included from /scratch/svcpetsc/spack.x/opt/spack/linux-ubuntu22.04-x86_64/gcc-11.4.0/petsc-3.22.0-7dsxwizo24ycnqvwnsscupuh4i7yusrh/include/petscsystypes.h:530:
In file included from /scratch/svcpetsc/spack.x/opt/spack/linux-ubuntu22.04-x86_64/gcc-11.4.0/rocthrust-6.1.2-ux5nmi4utw27oaqmz3sfjmhb6hyt5zed/include/thrust/complex.h:30:
/scratch/svcpetsc/spack.x/opt/spack/linux-ubuntu22.04-x86_64/gcc-11.4.0/rocthrust-6.1.2-ux5nmi4utw27oaqmz3sfjmhb6hyt5zed/include/thrust/detail/type_traits.h:29:10: fatal error: 'rocprim/detail/match_result_type.hpp' file not found
   29 | #include <rocprim/detail/match_result_type.hpp>
      |          ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
2024-09-15 13:30:55 -05:00
Harmen Stoppels
b4e32706db fetch_strategy: show the effective URL on checksum validation failure (#46349) 2024-09-15 20:26:02 +02:00
Debojyoti Ghosh
bcde9a3afb Updated HyPar package (#46394)
* updated HyPar repo links

* updated configure args with and without MPI

* updated checksum for zipped source
2024-09-15 10:45:57 -05:00
Juan Miguel Carceller
363215717d py-awkward: add v2.6.6 and py-awkward-cpp v35 (#46372)
* py-awkward: add v2.6.6 and py-awkward-cpp v35

* Add dependencies on python and numpy

* Add a conflict with GCC 14

* Move conflict to py-awkward-cpp

* py-awkward: 2.1.1 depends on py-awkward-cpp@12

---------

Co-authored-by: jmcarcell <jmcarcell@users.noreply.github.com>
Co-authored-by: Wouter Deconinck <wdconinc@gmail.com>
2024-09-14 15:04:46 -06:00
Alec Scott
ca46fec985 glab: add v1.46.1 (#46353) 2024-09-14 15:47:53 -05:00
Weston Ortiz
7df4ac70da goma: add v7.7.0 (#46362) 2024-09-14 15:45:21 -05:00
Adam J. Stewart
88aa96b53b py-torchmetrics: add v1.4.2 (#46389) 2024-09-14 15:15:29 -05:00
Richard Berger
4da2444a43 py-future: add version 1.0.0 (#46375) 2024-09-14 15:09:49 -05:00
Richard Berger
1a55f2cdab enchant: new versions, update homepage and url (#46386) 2024-09-14 15:05:56 -05:00
Richard Berger
5398b1be15 texlive: add new versions (#46374)
* texlive: use https

* texlive: add 20230313 and 20240312 versions
2024-09-14 13:31:15 -05:00
Jen Herting
a80d2d42d6 py-pydantic-core: new package (#46306)
* py-pydantic-core: new package

* [py-pydantic-core] fixed licence(checked_by)

* [py-pydantic-core] removed unnecessary python dependency

---------

Co-authored-by: Alex C Leute <acl2809@rit.edu>
2024-09-13 13:56:57 -05:00
Jen Herting
60104f916d py-pypdf: new package (#46303)
* [py-pypdf] New package

* [py-pypdf] added webpage
2024-09-13 09:56:47 -05:00
dependabot[bot]
d04358c369 build(deps): bump urllib3 from 2.2.2 to 2.2.3 in /lib/spack/docs (#46368)
Bumps [urllib3](https://github.com/urllib3/urllib3) from 2.2.2 to 2.2.3.
- [Release notes](https://github.com/urllib3/urllib3/releases)
- [Changelog](https://github.com/urllib3/urllib3/blob/main/CHANGES.rst)
- [Commits](https://github.com/urllib3/urllib3/compare/2.2.2...2.2.3)

---
updated-dependencies:
- dependency-name: urllib3
  dependency-type: direct:production
  update-type: version-update:semver-patch
...

Signed-off-by: dependabot[bot] <support@github.com>
Co-authored-by: dependabot[bot] <49699333+dependabot[bot]@users.noreply.github.com>
2024-09-13 08:15:21 -05:00
Kyle Knoepfel
4fe417b620 Optionally output package namespace (#46359) 2024-09-13 08:08:58 -05:00
jeffmauldin
e3c5d5817b Seacas add libcatalyst variant 2 (#46339)
* Update seacas package.py
  Adding libcatalyst variant to seacas package
  When seacas is installed with "seacas +libcatalyst"
  then a dependency on the spack package "libcatalyst"
  (which is catalyst api 2 from kitware) is added, and
  the appropriage cmake variable for the catalyst TPL
  is set. The mpi variant option in catalyst (i.e. build
  with mpi or build without mpi) is passed on to
  libcatalyst. The default of the libcatalyst variant
  is false/off, so if seacas is installed without the
  "+libcatalyst" in the spec it will behave exactly as
  it did before the introduction of this variant.
* shortened line 202 to comply with < 100 characters per line style requirement
2024-09-13 05:36:49 -06:00
Harmen Stoppels
7573ea2ae5 audit: deprecate certain globals (#44895) 2024-09-13 13:21:58 +02:00
Wouter Deconinck
ef35811f39 nasm: add v2.16.03 (#46357)
* nasm: add v2.16.03
* nasm: don't need 2.16.02
2024-09-13 04:40:34 -06:00
Juan Miguel Carceller
a798f40d04 zziplib: add v0.13.78 (#46361)
Co-authored-by: jmcarcell <jmcarcell@users.noreply.github.com>
2024-09-13 04:14:03 -06:00
David Collins
a85afb829e bash: use libc malloc on musl instead of internal malloc (#46370) 2024-09-13 03:54:56 -06:00
Harmen Stoppels
71df434d1f remove self-import cycles (#46371) 2024-09-13 11:16:36 +02:00
Joseph Wang
668aba15a0 py-pycontour: add dev/fixes (#46290) 2024-09-13 09:56:26 +02:00
eugeneswalker
2277052a6b e4s rocm external ci stack: upgrade to rocm v6.2.0 (#46328)
* e4s rocm external ci stack: upgrade to rocm v6.2.0

* magma: add rocm 6.2.0
2024-09-12 17:51:19 -07:00
James Smillie
79d938fb1f py-pip package: fix bootstrap for Python 3.12+ on Windows (#46332) 2024-09-12 14:40:30 -07:00
Wouter Deconinck
6051d56014 fastjet: avoid plugins=all,cxx combinations (#46276)
* fastjet: avoid plugins=all,cxx combinations

* fastjet: depends_on fortran when plugins=all or plugins=pxcone
2024-09-12 15:46:08 -05:00
Wouter Deconinck
94af1d2dfe tl-expected: add v1.1.0; deprecated custom calver version (#46036)
* tl-expected: add v1.1.0; deprecated calver version
* tl-expected: fix url
2024-09-12 12:08:37 -07:00
Jen Herting
d4bc1b8be2 py-httpx: added version 0.27.0 and 0.27.2 (#46311)
* py-httpx: New version
* [py-httpx] fix when for dependencies
* [py-httpx] organized dependencies
* [py-httpx] added version 0.27.2

---------

Co-authored-by: Alex C Leute <aclrc@rit.edu>
2024-09-12 12:00:20 -07:00
Alec Scott
a81baaa12e emacs: add v29.4 (#46350)
* emacs: add v29.4
* confirmed license
* emacs: update git link for https clones

---------

Co-authored-by: Wouter Deconinck <wdconinc@gmail.com>
2024-09-12 12:48:43 -06:00
Alec Scott
1a17d0b535 go: add v1.23.1 (#46354) 2024-09-12 10:34:43 -07:00
Alec Scott
6d16d7ff83 fd: add v10.2.0 (#46352)
* fd: add v10.2.0
* fd: add rust build dependency constraint
2024-09-12 10:32:33 -07:00
Alec Scott
c89c84770f restic: add v0.17.1 (#46351) 2024-09-12 10:25:04 -07:00
Alec Scott
9154df9062 ripgrep: add v14.1.1 (#46348)
* ripgrep: add v14.1.1
* ripgrep: fix rust dependency type
2024-09-12 10:18:25 -07:00
Alec Scott
56f3ae18f6 kubectl: add v1.31.0 (#46343) 2024-09-12 10:17:16 -07:00
Alec Scott
9a4f83be1d fzf: add v0.55.0 (#46342) 2024-09-12 10:16:15 -07:00
Vanessasaurus
6b10f80cca flux-sched: add v0.37.0, v0.38.0 (#46215)
* Automated deployment to update package flux-sched 2024-09-05
* flux-sched: add back check for run environment
* flux-sched: add conflict for gcc and clang above 0.37.0

---------

Co-authored-by: github-actions <github-actions@users.noreply.github.com>
2024-09-12 10:12:21 -07:00
Lydéric Debusschère
e8e8d59803 cpp-argparse: Add version 3.1 (#46319) 2024-09-12 10:10:23 -07:00
dependabot[bot]
d8d1bc5d7e build(deps): bump pytest from 8.3.2 to 8.3.3 in /lib/spack/docs (#46315)
Bumps [pytest](https://github.com/pytest-dev/pytest) from 8.3.2 to 8.3.3.
- [Release notes](https://github.com/pytest-dev/pytest/releases)
- [Changelog](https://github.com/pytest-dev/pytest/blob/main/CHANGELOG.rst)
- [Commits](https://github.com/pytest-dev/pytest/compare/8.3.2...8.3.3)

---
updated-dependencies:
- dependency-name: pytest
  dependency-type: direct:production
  update-type: version-update:semver-patch
...

Signed-off-by: dependabot[bot] <support@github.com>
Co-authored-by: dependabot[bot] <49699333+dependabot[bot]@users.noreply.github.com>
2024-09-12 08:57:05 -07:00
Alec Scott
3531ee28f8 curl: add v8.8.0 (#44622)
Co-authored-by: Harmen Stoppels <harmenstoppels@gmail.com>
2024-09-12 17:05:41 +02:00
Rocco Meli
8b18f95e05 ELSI: add v2.11 and dlaf variant (#46317)
* provide dlaff libs

* fix incompatibility with ntpoly

* add cuda conflicts

* [@spackbot] updating style on behalf of RMeli

* Update var/spack/repos/builtin/packages/elsi/package.py

Co-authored-by: Alberto Invernizzi <9337627+albestro@users.noreply.github.com>

* move pexsi conflict to context

---------

Co-authored-by: RMeli <RMeli@users.noreply.github.com>
Co-authored-by: Alberto Invernizzi <9337627+albestro@users.noreply.github.com>
2024-09-12 06:34:48 -06:00
Xuefeng Ding
128cac34e0 geant4: add hdf5 variant (#46312) 2024-09-12 06:34:26 -06:00
Harmen Stoppels
8fa65b286c fix various pkgs depending on libtool only (#46299)
autotools packages with a configure script should generate the libtool
executable, there's no point in `depends_on("libtool", type="build")`.

the libtool executable in `<libtool prefix>/bin/libtool` is configured
for the wrong toolchain (libtools %compiler instead of the package's
%compiler).

Some package link to `libltdl.so`, which is fine, but had a wrong
dependency type.
2024-09-12 14:05:50 +02:00
Mikael Simberg
6cb16c39ab pika: Add conflicts between pika's and apex's allocator options (#46318) 2024-09-12 13:46:39 +02:00
Wouter Deconinck
7403469413 w3m: add v0.5.3.git20230121 (#45747) 2024-09-12 13:44:55 +02:00
Wouter Deconinck
533de03fef libssh: add v0.9.8, v0.10.6, v0.11.0 (#45689) 2024-09-12 13:41:48 +02:00
Wouter Deconinck
3fea1d6710 codespaces: add ubuntu22.04 (#46100) 2024-09-12 13:40:05 +02:00
Wouter Deconinck
257ebce108 py-zope-*: add new versions (#46338) 2024-09-12 13:39:17 +02:00
Wouter Deconinck
2623b9727f mdspan: fix typo in satisfies condition (#46340) 2024-09-12 13:37:57 +02:00
Wouter Deconinck
68df483bc6 re2: add versions through 2024-07-02; add variant icu (#46337) 2024-09-12 13:37:30 +02:00
Wouter Deconinck
0cc38d685f pcre2: add v10.44 (#46341) 2024-09-12 04:24:49 -06:00
Mikael Simberg
cec770b26e pika: Add conflict between HIP and GCC (libstdc++) >= 13 (#46291) 2024-09-12 09:03:58 +02:00
Todd Gamblin
f417e9f00c acts: further simplify cxxstd handling (#46333)
See https://github.com/spack/spack/pull/46314#discussion_r1752940332.

This further simplifies `cxxstd` variant handling in `acts` by removing superfluous
version constraints from dependencies for `geant4` and `root`.

The version constraints in the loop are redundant with the conditional variant
values here:

```python
    _cxxstd_values = (
        conditional("14", when="@:0.8.1"),
        conditional("17", when="@:35"),
        conditional("20", when="@24:"),
    )
    _cxxstd_common = {
        "values": _cxxstd_values,
        "multi": False,
        "description": "Use the specified C++ standard when building.",
    }
    variant("cxxstd", default="17", when="@:35", **_cxxstd_common)
    variant("cxxstd", default="20", when="@36:", **_cxxstd_common)
```

So we can simplify the dependencies in the loop to:

```python
    for _cxxstd in _cxxstd_values:
        for _v in _cxxstd:
            depends_on(f"geant4 cxxstd={_v.value}", when=f"cxxstd={_v.value} +geant4")
            depends_on(f"geant4 cxxstd={_v.value}", when=f"cxxstd={_v.value} +fatras_geant4")
            depends_on(f"root cxxstd={_v.value}", when=f"cxxstd={_v.value} +tgeo")
```

And avoid the potential for impossible variant expressions.

Signed-off-by: Todd Gamblin <tgamblin@llnl.gov>
2024-09-11 23:14:50 -06:00
Peter Scheibel
527e0fb4b4 bugfix: unit test broken everywhere by package change(#46344)
Openmpi provider statements were changed in #46102. The package change
was fine in and of itself, but apparently one of our tests depends on
the precise constraints used in those statements. I updated the test
to remove the checks for constraints that were removed.
2024-09-11 19:52:40 -07:00
Stephen Nicholas Swatman
c7e3fc9049 boost: add v1.86.0 (#46321)
This commit adds Boost v1.86.0.
2024-09-11 20:37:43 -06:00
Stephen Nicholas Swatman
5c59bb87a4 acts: add v36.3.0 (#46320)
This commit adds v36.3.0 of ACTS, and also marks a previously missing
conflict with Boost 1.85.0
2024-09-11 16:55:26 -06:00
Stephen Nicholas Swatman
bca975e66a hep tag: new versions as of 2024/09/11 (#46322)
This commit updates acts-algebra-plugins to v0.25.0, actsvg to v0.4.47,
detray to v0.74.2, geomodel to v6.5.0, and vecmem to v1.7.0.
2024-09-11 16:49:18 -06:00
Pranav Sivaraman
8160cd1b9e scnlib: new package (#46313) 2024-09-11 13:18:12 -07:00
Adam J. Stewart
5833fe0c36 py-scikit-learn: add v1.5.2 (#46327) 2024-09-11 12:23:42 -07:00
Adam J. Stewart
ff1bc9e555 py-xgboost: add v2.1.1 (#46260)
* py-xgboost: add v2.1.1
* setuptools no longer needed
* Better comment
2024-09-11 12:00:48 -07:00
Dom Heinzeller
6db1defba0 New packages: py-regionmask and py-pyogrio (#46209)
* Add py-geopandas versions 1.0.0 and 1.0.1, update dependencies
* New package py-pyogrio - dependency of newer py-geopandas
* New package py-regionmask - needs py-geopandas
2024-09-11 11:37:13 -07:00
Todd Gamblin
3099662df2 Fix variant expressions that will never match (#46314)
In #44425, we add stricter variant audits that catch expressions that can never match.

This fixes 13 packages that had this type of issue.

Most packages had lingering spec expressions from before conditional variants with
`when=` statements were added. For example:

* Given `conflicts("+a", when="~b")`, if the package has since added
  `variant("a", when="+b")`, the conflict is no longer needed, because
  `a` and `b` will never exist together.

* Similarly, two packages that depended on `py-torch` depended on
  `py-torch~cuda~cudnn`, which can't match because the `cudnn` variant
  doesn't exist when `cuda` is disabled. Note that neither `+foo` or `~foo`
  match (intentionally) if the `foo` variant doesn't exist.

* Some packages referred to impossible version/variant combinations, e.g.,
  `ceed@1.0.0+mfem~petsc` when the `petsc` variant only exist at version `2`
  or higher.

Some of these correct real issues (e.g. the `py-torch` dependencies would have never
worked). Others simply declutter old code in packages by making all constraints
consistent with version and variant updates.

The only one of these that I think is not all that useful is the one for `acts`,
where looping over `cxxstd` versions and package versions ends up adding some
constraints that are impossible. The additional dependencies could never have
happened and the code is more complicated with the needed extra constriant.
I think *probably* the best thing to do in `acts` is to just not to use a loop
and to write out the constraints explicitly, but maybe the code is easier to
maintain as written.

Signed-off-by: Todd Gamblin <tgamblin@llnl.gov>
2024-09-11 10:59:16 -07:00
Satish Balay
2185749bb4 openmpi: update dependency wrt mpi standard versions (#46102)
* openmpi: update mpi version dependency
* Use "disjoint sets" for version ranges
2024-09-11 09:13:17 -07:00
Dom Heinzeller
6287d98455 Update FMS: apply patch for fms@2023.03, add variant shared and patch for fms@2024.02 (#46238)
* Update var/spack/repos/builtin/packages/fms/package.py: apply patch for fms@2023.03 to fix compiler options bug in cmake config, add variant shared and corresponding patch for fms@2024.02
* Fix fms package audit: use c9bba516ba.patch?full_index=1 instead of c9bba516ba.patch?full_index=1
* Update checksum of patch for fms@2023.03
2024-09-11 09:08:52 -07:00
Harmen Stoppels
6c4990525d fixesproto: add xextproto dep (#46325)
needed according to pc file
2024-09-11 10:48:56 -05:00
Pierre Augier
5beed521bd py-fluidfft and co: add new packages (#46236)
* Add new packages: py-fluidfft and co

* py-fluidfft: add few contrains (version dependencies)
2024-09-11 09:45:56 -06:00
Adam J. Stewart
5fa8890bd3 CUDA: support Grace Hopper 9.0a compute capability (#45540)
* CUDA: support Grace Hopper 9.0a compute capability

* Fix other packages

* Add type annotations

* Support ancient Python versions

* isort

* spec -> self.spec

Co-authored-by: Andrew W Elble <aweits@rit.edu>

* [@spackbot] updating style on behalf of adamjstewart

---------

Co-authored-by: Andrew W Elble <aweits@rit.edu>
Co-authored-by: adamjstewart <adamjstewart@users.noreply.github.com>
2024-09-11 17:43:20 +02:00
Jannek Squar
122c3c2dbb CDO: add patch for missing algorithm header (#45692)
* add cdo patch for missing algorithm header

* add patch for 2.2.2:2.3.0

Signed-off-by: Jannek <squar@informatik.uni-hamburg.de>

* Add conflict of old cdo with new gcc

* Update var/spack/repos/builtin/packages/cdo/add_algorithm_header_222.patch

Co-authored-by: Wouter Deconinck <wdconinc@gmail.com>

* Adjust patch hash

* Update var/spack/repos/builtin/packages/cdo/package.py

fix copy-paste-error on hash

Co-authored-by: Wouter Deconinck <wdconinc@gmail.com>

---------

Signed-off-by: Jannek <squar@informatik.uni-hamburg.de>
Co-authored-by: Jannek <squar@informatik.uni-hamburg.de>
Co-authored-by: Try2Code <stark.dreamdetective@gmail.com>
Co-authored-by: Wouter Deconinck <wdconinc@gmail.com>
2024-09-11 08:00:56 -05:00
Adam J. Stewart
607d158a44 OpenCV: add v4.8-4.10 (#46223) 2024-09-11 14:52:39 +02:00
Rocco Meli
892b5d8037 cp2k: add v2024.3 (#46297) 2024-09-11 09:58:03 +02:00
Massimiliano Culpo
4f00c7173d nvhpc: add 'compiler' tag to the override (#46301)
fixes #46295

A proper solution would be a tag directive that accumulates tags
with the ones defined in base classes.

For the time being, rewrite them explicitly.

Signed-off-by: Massimiliano Culpo <massimiliano.culpo@gmail.com>
2024-09-11 09:47:55 +02:00
James Smillie
fc4a4ec70d boost package: fix Windows build (#43732)
* Boost:Adjust bootstrapping/b2 options as needed for Windows (the
  bootstrapping phase sufficiently differs between Windows/Unix
  that it is handled entirely within its own branch).
* Boost: Paths in user-config.jam should be POSIX, including on Windows
* Python: `.libs` for the Python package should return link libraries
  on Windows. The libraries are also stored in a different directory.
2024-09-11 01:43:28 -06:00
afzpatel
e1da0a7312 Bump up the version for ROCm-6.2.0 (#45701)
* initial update for rocm 6.2
* fix typo in rocprofiler-register
* update rocm-device-libs
* add patch to use clang 18 for roctracer-dev
* add updates for rocm-opencl and rocm-validation-suite
* add hipify-clang patch
* update remaining packages to 6.2
* update hipblaslt mivisionx patches
* update rocm-tensile to 6.2.0
* add hipsparselt changes for 6.2
* add rocm-openmp-extras patch
* add build-time test for rocprofiler-register
* update flang-legacy support for 6.2
* simplify version range
* update boost dependency in rpp

---------

Co-authored-by: Tamara Dahlgren <35777542+tldahlgren@users.noreply.github.com>
2024-09-10 20:13:21 -06:00
Taillefumier Mathieu
f58ee3ea2b SIRIUS: add v7.6.1 (#46296)
bug fix update for sirius
2024-09-10 13:08:32 -06:00
Massimiliano Culpo
ffdfa498bf Deprecate config:install_missing_compilers (#46237)
The option config:install_missing_compilers is currently buggy,
and has been for a while. Remove it, since it won't be needed
when compilers are treated as dependencies.

Signed-off-by: Massimiliano Culpo <massimiliano.culpo@gmail.com>
2024-09-10 20:02:05 +02:00
Teague Sterling
decefe0234 perl-bio-ensembl-io: new package (#44509)
* Adding the perl-bio-db-bigfile package

* Adding perl-bio-ensembl-io package

* Update package.py

* Update package.py

* Update package.py

* Update package.py

* Updating dependent package handling

Signed-off-by: Teague Sterling <teaguesterling@gmail.com>

* Updating dependent package handling

Signed-off-by: Teague Sterling <teaguesterling@gmail.com>

* Reverting variants

Signed-off-by: Teague Sterling <teaguesterling@gmail.com>

* Rename package.py to package.py

* Update package.py

* Update package.py

* Removing unneeded dependencies

Signed-off-by: Teague Sterling <teaguesterling@gmail.com>

* Update package.py

* Update package.py

* Update package.py

* Update package.py

* Update package.py

* Updated from testing by @ebiarnie

Signed-off-by: Teague Sterling <teaguesterling@gmail.com>

* Updated from testing by @ebiarnie

Signed-off-by: Teague Sterling <teaguesterling@gmail.com>

* Fixing depends

Signed-off-by: Teague Sterling <teaguesterling@gmail.com>

* Fix styles

Signed-off-by: Teague Sterling <teaguesterling@gmail.com>

* Update package.py

---------

Signed-off-by: Teague Sterling <teaguesterling@gmail.com>
2024-09-10 11:45:59 -06:00
Pranav Sivaraman
e2e5e74b99 fast-float: new package (#46137)
* fast-float: new package

* fast-float: add test dependency

* fast-float: fix doctest dependency type

* fast-float: convert deps to tuple

* fast-float: add v6.1.5 and v6.1.6

* fast-float: patch older versions to use find_package(doctest)
2024-09-10 12:36:23 -05:00
Tony Weaver
0629c5df38 py-your: Changed software pull location (#46201)
* py-your: new package

Spack package recipe for YOUR, Your Unified Reader.  YOUR processes pulsar data in different formats.

Output below from spack install py-your
spack install py-your
==> Installing py-your-0.6.7-djfzsn2lutp24ik6wrk6tjx5f7hil76x [83/83]
==> No binary for py-your-0.6.7-djfzsn2lutp24ik6wrk6tjx5f7hil76x found: installing from source
==> Fetching https://github.com/thepetabyteproject/your/archive/refs/tags/0.6.7.tar.gz
==> No patches needed for py-your
==> py-your: Executing phase: 'install'
==> py-your: Successfully installed py-your-0.6.7-djfzsn2lutp24ik6wrk6tjx5f7hil76x
  Stage: 1.43s.  Install: 0.99s.  Post-install: 0.12s.  Total: 3.12s

* Removed setup_run_environment

After some testing, both spack load and module load for the package will include the bin directory generated by py-your as well as the path to the version of python the package was built with, without the need for the setup_run_environment function.

I removed that function (Although, like Tamara I thought it would be necessary based on other package setups I used as a  basis for this package).

Note: I also updated the required version of py-astropy from py-astropy@4.0: to @py-astropy@6.1.0:  In my test builds, the install was picking up version py-astropy@4.0.1.post1 and numpy1.26.  However when I  tried to run some of the code I was getting errors about py-astropy making numpy calls that are now removed.  The newer version of py-astropy corrects these.  Ideally this would be handled in the py-astropy package to make sure numpy isn't too new

* Changed  software pull location

The original package pulled a tagged release version from GitHub.  That tagged version was created in 2022  and has not been updated since.  It no longer runs because newer versions of numpy have removed deprecation warnings for several of their calls.  The main branch for this repository has addressed these numpy issues as well as some other important fixes but no new release has been generated.  Because of this and the apparent minimal development that now appears to be going on, it is probably best to always pull from the main branch

* [@spackbot] updating style on behalf of aweaver1fandm

* py-your: Changed software pull location

1. Restored original URL and version (0.6.7) as requested
2. Updated py-numpy dependency versions to be constrained based on the version of your.  Because of numpy deprecations related to your version 0.6.7 need to ensure that the numpy version used is not 1.24 or greater because the depracations were removed starting with that version
2024-09-10 10:37:05 -05:00
Robert Underwood
79d778f8cd Add additional cuda-toolkit location variable used by py-torch (#46245)
superceds #46128

Co-authored-by: Robert Underwood <runderwood@anl.gov>
2024-09-10 17:20:05 +02:00
Teague Sterling
6f5ba44431 perl-bioperl: add v1.6.924, v1.7.8, deprecate v1.007002, refactor dependeicies, update url (#46213)
* perl-bioperl: add v1.6.924

Signed-off-by: Teague Sterling <teaguesterling@gmail.com>

* fix style

Signed-off-by: Teague Sterling <teaguesterling@gmail.com>

* perl-bioperl: add v1.6.924, v1.7.2, deprecate v1.007002, refactor dependencies

Signed-off-by: Teague Sterling <teaguesterling@gmail.com>

* perl-bioperl: add v1.7.8

Signed-off-by: Teague Sterling <teaguesterling@gmail.com>

* perl-bioperl: update url

Signed-off-by: Teague Sterling <teaguesterling@gmail.com>

* perl-bioperl: cleanup version urls

Signed-off-by: Teague Sterling <teaguesterling@gmail.com>

* remove v1.7.2

---------

Signed-off-by: Teague Sterling <teaguesterling@gmail.com>
2024-09-10 11:36:43 +01:00
Harmen Stoppels
0905edf592 r: do not create dir in setup_dependent_package (#46282) 2024-09-10 09:04:09 +02:00
Harmen Stoppels
16dba78288 spec.py: dedent format logic (#46279) 2024-09-10 09:02:37 +02:00
Todd Gamblin
b220938d42 bugfix: elfutils has no bzip2 or xz variants (#46294)
Signed-off-by: Todd Gamblin <tgamblin@llnl.gov>
2024-09-10 06:20:39 +00:00
Mikael Simberg
78117877e0 boost: Refactor header-only install and add missing compiled libraries (#46281) 2024-09-10 08:16:47 +02:00
Harmen Stoppels
975f4fbf84 cmake: remove last occurrences of std_cmake_args globals (#46288) 2024-09-10 07:56:51 +02:00
AcriusWinter
dc853b2cf4 gptune: new test API (#45383)
* gptune: new test API
* gptune: cleanup; finish API changes; separate unrelated test parts
* gptune: standalone test cleanup with timeout constraints
* gptune: ensure stand-alone test bash failures terminate; enable in CI
* gptune: add directory to terminate_bash_failures
* gptune/stand-alone tests: use satisifes for checking variants

---------

Co-authored-by: Tamara Dahlgren <dahlgren1@llnl.gov>
2024-09-09 15:21:55 -07:00
Philipp Edelmann
69b628a3f0 makedepf90: new package (#45816)
* makedepf90: new package

* reorder versions and dependencies
2024-09-09 16:40:25 -05:00
David Collins
98fb9c23f9 numactl: Add versions 2.0.16-2.0.18 (#46150)
* Add numactl 2.0.16-2.0.18

* Create link-with-latomic-if-needed-v2.0.16.patch

Add a link to libatomic, if needed, for numactl v2.0.16.

* Add some missing patches to v2.0.16

* Create numactl-2.0.18-syscall-NR-ppc64.patch

In short, we need numactl to set __NR_set_mempolicy_home_node on ppc64, if it's not already defined.

* Apply a necessary patch for v2.0.18 on PPC64

* Add libatomic patch for v2.0.16
2024-09-09 14:33:13 -06:00
Pranav Sivaraman
d5e08abe46 py-poxy: add new package (#46214)
* py-poxy: add new package
* py-poxy: depends on misk >= 0.8.1
2024-09-09 12:19:54 -07:00
Harmen Stoppels
2f789f01d3 Revert "Set module variables for all packages before running setup_dependent_…" (#46283)
This reverts commit 6f08db4631.
2024-09-09 10:37:26 -07:00
Kevin Kuriakose
0229240df4 darshan-runtime: fix JOBID determination (#46148) 2024-09-09 10:53:15 -06:00
Harmen Stoppels
9059756a11 reindex: do not assume fixed layout (#46170)
`spack reindex` relies on projections from configuration to locate
installed specs and prefixes. This is problematic because config can
change over time, and we have reasons to do so when turning compilers
into depedencies (removing `{compiler.name}-{compiler.version}` from
projections)

This commit makes reindex recursively search for .spack/ metadirs.
2024-09-09 17:26:30 +02:00
Pierre Augier
67089b967e Add new package py-fluiddyn (#46235) 2024-09-09 09:47:44 -05:00
Mikael Simberg
98e35f7232 pika: Add conflict with fmt 11 and newer (#46280) 2024-09-09 14:30:32 +02:00
Teague Sterling
3ff441c5b0 perl-graphviz: add graphviz dependency (#46268)
Signed-off-by: Teague Sterling <teaguesterling@gmail.com>
2024-09-09 11:08:34 +02:00
Jordan Galby
2502a3c2b6 Fix regression in spec format string for indiviual variants (#46206)
Fix a regression in {variants.X} and {variants.X.value} spec format strings.
2024-09-09 10:42:04 +02:00
Adam J. Stewart
9bdc97043e PyTorch: unpin pybind11 dependency (#46266) 2024-09-09 08:42:09 +02:00
snehring
66ee4caeab nekrs: add v23.0, add new build system (#45992) 2024-09-09 07:32:14 +02:00
Eric Berquist
18218d732a intel-pin: add up to v3.31 (#46185) 2024-09-09 07:28:53 +02:00
Paul Ferrell
4c6b3ccb40 charliecloud: fix libsquashfuse dependency type (#46189)
Should have been a link depenedency, not a build dependency.
2024-09-09 07:26:20 +02:00
Satish Balay
1d9c8a9034 xsdk: add amrex variant (#46190)
and remove compiler conditionals [as amrex conflict with clang no longer exists since #22967]
2024-09-09 07:19:31 +02:00
AMD Toolchain Support
216619bb53 namd: variant updates (#45825)
* Add missing variant, already used in recipe (avxtiles)

* Add memopt variant 

Co-authored-by: viveshar <vivek.sharma2@amd.com>
2024-09-09 07:12:16 +02:00
Wouter Deconinck
47c771f03f assimp: add v5.4.3, enable testing (#46267) 2024-09-09 06:51:57 +02:00
Wouter Deconinck
c7139eb690 wayland-protocols: add v1.37 (#46269) 2024-09-09 06:50:30 +02:00
Wouter Deconinck
74ba81368a py-vector: add v1.5.1 (#46271) 2024-09-09 06:49:35 +02:00
Wouter Deconinck
ef11fcdf34 protobuf: patch @3.22:3.24.3 when ^abseil-cpp@20240116: (#46273) 2024-09-09 06:48:50 +02:00
Wouter Deconinck
c4f3348af1 (py-)onnx: add v1.16.2; onnx: enable testing (#46274) 2024-09-09 06:47:45 +02:00
Richard Berger
fec2f30d5a lammps: add 20240829 and 20230802.4 releases (#46131) 2024-09-09 06:46:12 +02:00
Wouter Deconinck
6af92f59ec xrootd: add v5.7.1 (#46270) 2024-09-09 06:45:15 +02:00
Pierre Augier
cb47c5f0ac Add package py-transonic (#46234) 2024-09-08 20:03:09 -05:00
Dom Heinzeller
32727087f1 Add patch vfile_cassert.patch for ecflow@5.11.4 (#46095) 2024-09-07 07:54:43 -06:00
Jen Herting
5f9c6299d1 [py-langsmith] added version 0.1.81 (#46259) 2024-09-07 04:29:45 -06:00
Jen Herting
541e40e252 py-httpcore: add v1.0.5 (#46123)
* py-httpcore: Added new version

* [py-httpcore]

- added version 0.18.0
- restructured dependencies as everything has a when and
  type/when ordering was all over the place

* [py-httpcore] ordered dependencies in the order listed in v1.0.5 pyproject.toml

---------

Co-authored-by: Alex C Leute <aclrc@rit.edu>
2024-09-07 02:28:15 -06:00
Jen Herting
ddc8790896 [py-lpips] new package (#46256) 2024-09-06 18:54:51 -06:00
Jen Herting
7d6b643b58 [py-torch-fidelity] New package (#46257)
* [py-torch-fidelity] New package
* [py-torch-fidelity] add patch to fix missing requirements.txt
2024-09-06 18:54:36 -06:00
Dan Lipsa
6f08db4631 Set module variables for all packages before running setup_dependent_package (#44327)
When a package is running `setup_dependent_package` on a parent, ensure
that module variables like `spack_cc` are available. This was often
true prior to this commit, but externals were an exception.

---------

Co-authored-by: John Parent <john.parent@kitware.com>
2024-09-06 18:54:09 -06:00
eugeneswalker
7086d6f1ac use updated container with cmake@3.30.2 (#46262) 2024-09-06 18:48:45 -06:00
Robert Underwood
7a313295ac Sz3 fix (#46263)
* Updated version of sz3
  Supercedes #46128
* Add Robertu94 to maintainers fo r SZ3

---------

Co-authored-by: Robert Underwood <runderwood@anl.gov>
2024-09-06 14:35:55 -07:00
Jen Herting
3bdaaaf47c New package: py-monai (#46140)
* New package: py-monai

* Fixed linked issues with py-monai

* [py-monai] removed extra line

* [py-monai]

- New version 1.3.2
- ran black
- update copyright

* [py-monai] added license

* [py-monai]

- moved build only dependencies
- specified newer python requirements for newer versions

---------

Co-authored-by: vehrc <vehrc@rit.edu>
2024-09-06 15:19:12 -06:00
Massimiliano Culpo
a3fa54812f Remove deprecated config options (#44061)
These options have been deprecated in v0.21, and
slated for removal in v0.23
2024-09-06 15:14:36 -06:00
Kyle Gerheiser
afc9615abf libfabric: Add versions v1.22.0 and v1.21.1 (#46188)
* Add libfabric v1.22.0 and v1.21.1

* Fix whitespace
2024-09-06 14:21:41 -05:00
Adam J. Stewart
19352af10b GEOS: add v3.13.0 (#46261) 2024-09-06 12:17:41 -07:00
Robert Underwood
e4f8cff286 Updated version of sz3 (#46246)
Supercedes #46128

Co-authored-by: Robert Underwood <runderwood@anl.gov>
2024-09-06 12:15:03 -07:00
Sam Reeve
76df9de26a Update ExaCA backend handling and add version 2.0 (#46243)
* Add exaca 2.0
* Add kokkos/cuda/hip backend support for exaca
2024-09-06 14:53:21 -04:00
Auriane R.
983e7427f7 Replace if ... in spec with spec.satisfies in f* and g* packages (#46127)
* Replace if ... in spec with spec.satisfies in f* and g* packages

* gromacs: ^amdfftw -> ^[virtuals=fftw-api] amdfftw

* flamemaster: add virtuals lapack for the amdlibflame dependency

---------

Co-authored-by: Wouter Deconinck <wdconinc@gmail.com>
2024-09-06 13:22:19 -05:00
Adam J. Stewart
d9df520e85 py-pandas: relax build dependencies (#46229) 2024-09-06 11:19:49 -07:00
Adam J. Stewart
b51fd9f5a6 py-torchgeo: zipfile-deflate64 no longer required (#46233) 2024-09-06 11:18:10 -07:00
Robert Underwood
8058cd34e4 Require a newer version of cudnn for cupy (#46248)
cupy 12 needs a newer version of cudnn as documented here.  Supercedes #46128

Co-authored-by: Robert Underwood <runderwood@anl.gov>
2024-09-06 10:56:46 -07:00
Robert Underwood
2f488b9329 Use an HTTP git url for libpressio-opt (#46249)
superceds #46128

Co-authored-by: Robert Underwood <runderwood@anl.gov>
2024-09-06 10:43:23 -07:00
Peter Scheibel
78a4d3e7d2 Mixed-source cflags (#41049)
Allow flags from different sources (compilers, `require:`, command-line
specs, and `depends_on`) to be merged together, and enforce a consistent
order among them.

The order is based on the sources, e.g. flags on specs from the command
line always come last. Some flag order consistency issues are fixed:

1. Flags from `compilers.yaml` and the command line were always intra- and
   inter-source order consistent.
2. Flags from dependents and packages.yaml (introduced via `require:`)
   were not: for `-a -b` from one source and `-c` from another, the final
   result might rearrange `-a -b`, and would also be inconsistent in terms
   of whether `-c` came before or after.

(1) is/was handled by going back to the original source, i.e., flags are
retrieved directly from the command line spec rather than the solver.

(2) is addressed by:

* Keeping track of grouped flags in the solver
* Keeping track of flag sources in the solver on a per-flag basis

The latter info is used in this PR to enforce DAG ordering on flags
applied from multiple dependents to the same package, e.g., for this
graph:

```
   a
  /|\
 b | c
  \|/
   d
```

If `a`, `b`, and `c` impose flags on `d`, the combined flags on `d` will
contain the flags of `a`, `b`, and `c` -- in that order. 

Conflicting flags are allowed (e.g. -O2 and -O3). `Spec.satisifes()` has
been updated such that X satisfies Y as long as X has *at least* all of
the flags that Y has. This is also true in the solver constraints.
`.satisfies` does not account for how order can change behavior (so
`-O2 -O3` can satisfy `-O3 -O2`); it is expected that this can be
addressed later (e.g. by prohibiting flag conflicts).

`Spec.constrain` and `.intersects` have been updated to be consistent
with this new definition of `.satisfies`.
2024-09-06 10:37:33 -07:00
Juan Miguel Carceller
2b9a621d19 sleef: add the PIC flag (#46217) 2024-09-06 09:37:20 -06:00
Juan Miguel Carceller
fa5f4f1cab pthreadpool: add the PIC flag (#46216) 2024-09-06 15:11:03 +02:00
John W. Parent
4042afaa99 Bootstrap GnuPG and file on Windows (#41810)
Spack can now bootstrap two new dependencies on Windows: GnuPG, and file. 

These dependencies are modeled as a separate package, and they install a cross-compiled binary.
Details on how they binaries are built are in https://github.com/spack/windows-bootstrap-resources
2024-09-06 14:26:46 +02:00
Harmen Stoppels
7fdf1029b7 fish: use shlex.quote instead of custom quote (#46251) 2024-09-06 11:38:14 +00:00
Stephen Nicholas Swatman
814f4f20c0 py-pybind11: add v2.13.0-v2.13.4 and new conflict (#45872)
This PR adds py-pybind11 versions 2.13.0, 2.13.1, 2.13.2, 2.13.3, and
2.13.4. It also adds a new conflict between gcc 14 and pybind versions
up to and including 2.13.1.
2024-09-06 10:38:35 +02:00
Harmen Stoppels
7c473937ba db: more type hints (#46242) 2024-09-06 09:13:14 +02:00
Robert Underwood
9d754c127a Require a newer version of cudnn for cupy (#46247)
cupy 12 needs a newer version of cudnn as documented here.  Supercedes #46128

Co-authored-by: Robert Underwood <runderwood@anl.gov>
2024-09-05 23:12:46 -06:00
Massimiliano Culpo
9a8bff01ad Allow deprecating more than one property in config (#46221)
* Allow deprecating more than one property in config

This internal change allows the customization of errors
and warnings to be printed when deprecating a property.

Signed-off-by: Massimiliano Culpo <massimiliano.culpo@gmail.com>

* fix

Signed-off-by: Massimiliano Culpo <massimiliano.culpo@gmail.com>

* Use a list comprehension for "issues"

Signed-off-by: Massimiliano Culpo <massimiliano.culpo@gmail.com>

---------

Signed-off-by: Massimiliano Culpo <massimiliano.culpo@gmail.com>
2024-09-05 15:33:20 -07:00
Nicole C.
434a703bcf Windows: Update pytest with echo and remove others (#45620)
* Windows: Update pytest with echo and remove others

* Fix style

* Remove unused pytest import in undevelop

* Update test_test_part_pass to be Window compatible

* Style
2024-09-05 15:34:19 -05:00
Adam J. Stewart
a42108438d py-contourpy: add v1.3.0 (#46225) 2024-09-05 22:16:14 +02:00
Sebastian Pipping
1be9b7f53c expat: Add 2.6.3 with security fixes + deprecate vulnerable 2.6.2 (#46208) 2024-09-05 14:09:34 -06:00
Dom Heinzeller
6b05a80745 Bug fixes for building py-netcdf4 and py-ruamel-yaml-clib with apple-clang@15 (#46184)
* Fix compiler flags in py-netcdf4 for apple-clang@15:
* Fix compiler flags in py-ruamel-yaml-clib for apple-clang@15:
2024-09-05 11:29:26 -07:00
Fernando Ayats
4d36b0a5ef npb: fix mpi rank mismatch errors (#46075)
MPI variant has several rank mismatch errors, which are silently
ignored. This downgrades the errors to warnings.
2024-09-05 11:27:15 -07:00
Adam J. Stewart
636843f330 PyTorch: update ecosystem (#46220) 2024-09-05 11:06:57 -07:00
Adam J. Stewart
d4378b6e09 awscli-v2: remove upperbound on cryptography (#46222) 2024-09-05 11:04:56 -07:00
Adam J. Stewart
69b54d9039 py-imageio: add v2.35.1 (#46227) 2024-09-05 10:57:57 -07:00
Adam J. Stewart
618866b35c py-laspy: add v2.3.5 (#46228) 2024-09-05 10:56:51 -07:00
Adam J. Stewart
47bd8a6b26 py-pyvista: add v0.44.1 (#46231) 2024-09-05 10:53:42 -07:00
Adam J. Stewart
93d31225db py-tifffile: add v2024 (#46232) 2024-09-05 10:52:21 -07:00
Alex Richert
c3a1d1f91e Add when's to some tau dependencies (#46212)
* Add when's to some tau dependencies

* [@spackbot] updating style on behalf of AlexanderRichert-NOAA
2024-09-05 10:35:01 -07:00
estewart08
33621a9860 [rocm-openmp-extras] - Add support for flang-legacy in 6.1.2 (#46130)
* [rocm-openmp-extras] - Add support for flang-legacy in 6.1.2
* [rocm-openmp-extras] - Remove unused variable flang_legacy_dir
* [rocm-openmp-extras] - Limit flang-legacy build to 6.1 and newer ROCm versions
2024-09-05 12:27:50 -05:00
etiennemlb
055eb3cd94 PLUMED: Using a C compiler variable (#46082)
* Using a C compiler variable

* homogeneity
2024-09-05 10:43:28 -06:00
Massimiliano Culpo
c4d18671fe Avoid best-effort expansion of stacks (#40792)
fixes #40791

Currently stacks behave differently if used in unify:false
environments, which leads to inconsistencies during concretization.

For instance, we might have two abstract user specs that do not
intersect with each other map to the same concrete spec in the
environment. This is clearly wrong.

This PR removes the best effort expansion, so that user specs
are always applied strictly.
2024-09-05 10:32:15 -06:00
Thomas Madlener
5d9f0cf44e gaudi: Specify boost dependencies explicitly and cleanup package (#46194)
* gaudi: Specify boost components and add +fiber for v39

* gaudi: Limit fmt version to allow building master branch

* Make boost dependencies a bit more readable

* Remove patches for no longer existing versions
2024-09-05 08:27:04 -06:00
Harmen Stoppels
02faa7b97e reindex: ensure database is empty before reindex (#46199)
fixes two tests that did not clear the in-memory bits of a database
before calling reindex.
2024-09-05 14:53:29 +02:00
Mikael Simberg
d37749cedd pika: Add 0.28.0 (#46207)
* pika: Add 0.28.0

* Add conflict between pika 0.28.0 and dla-future
2024-09-05 14:12:21 +02:00
Harmen Stoppels
7e5e6f2833 Pass Database layout in constructor (#46219)
Ensures that Database instances do not reference a global
`spack.store.STORE.layout`. Simplify Database.{add,reindex} signature.
2024-09-05 10:49:03 +00:00
Massimiliano Culpo
37ea9657cf Remove test_external_package_module (#46218)
This test was possibly meant for the Cray platform, and
currently is a no-op.

Signed-off-by: Massimiliano Culpo <massimiliano.culpo@gmail.com>
2024-09-05 12:10:59 +02:00
Harmen Stoppels
2107a88514 spack deprecate: deprecate --link-type flag (#46202) 2024-09-05 11:06:46 +02:00
Auriane R.
1a4b07e730 Replace if ... in spec with spec.satisfies in d* and e* packages (#46126)
* Replace if ... in spec with spec.satisfies in d* and e* packages

* Use virtuals for different mpi implementations in esmf

* esmf: ^[virtuals=mpi] mpt

* extrae: ^[virtuals=mpi] intel-oneapi-mpi

---------

Co-authored-by: Wouter Deconinck <wdconinc@gmail.com>
2024-09-04 22:33:51 -06:00
Jack Morrison
c98045e028 libfabric: Add CUDA variant (#46203)
Signed-off-by: Jack Morrison <jack.morrison@cornelisnetworks.com>
2024-09-04 21:43:25 -06:00
mvlopri
bc5456a791 seacas: require +metis and +mpi instead of +parmetis (#46205)
This change aligns the build condition for parmetis with the
depends_on condition.
The current build condition of parmetis looks for "+parmetis" in
the spec which is not added by the depends_on as that adds
"^parmetis" instead.
2024-09-04 21:03:02 -06:00
Pranav Sivaraman
656720a387 py-schema: add v0.7.7 (#46210)
* py-schema: add v0.7.7

* py-schema: fix when spec

Co-authored-by: Wouter Deconinck <wdconinc@gmail.com>

---------

Co-authored-by: Wouter Deconinck <wdconinc@gmail.com>
2024-09-04 20:07:35 -06:00
Mikael Simberg
9604c0a9b3 boost: Conditionally include/exclude Boost.Json depending on Boost version (#46200) 2024-09-04 16:50:06 -06:00
Pranav Sivaraman
ee96194486 py-misk: add new package (#46153) 2024-09-04 11:25:01 -07:00
Felix Thaler
ab21fc1daf Added jump package (#46164) 2024-09-04 11:16:20 -07:00
Pranav Sivaraman
d593ad0c06 py-trieregex: new package (#46154)
* py-trieregex: new package
2024-09-04 10:58:08 -07:00
Weiqun Zhang
254fe6ed6e amrex: add v24.09 (#46171) 2024-09-04 10:54:49 -07:00
renjithravindrankannath
7e20874f54 rocm-openmp-extras: Avoiding registration of duplicate check-targets and fix for the failure in hostexec (#45658)
* Adding addtional check for omptarget library for amdgpu in nvidia environment
* Avoiding registration of duplicate when built on cuda
* Adding hsa library path in LD_LIBRARY_PATH
* Correction in hsa prefix library path in LD_LIBRARY_PATH
2024-09-04 10:31:28 -07:00
Vanessasaurus
cd4c40fdbd Automated deployment to update package flux-core 2024-09-04 (#46191)
Co-authored-by: github-actions <github-actions@users.noreply.github.com>
2024-09-04 10:28:44 -07:00
Harmen Stoppels
c13e8e49fe goaccess: new package (#46193) 2024-09-04 10:23:28 -07:00
Adam J. Stewart
35a2a0b3d0 py-rasterio: add v1.3.11 (#46195)
* py-rasterio: add v1.3.11
* Use default_args
2024-09-04 09:45:16 -07:00
Adam J. Stewart
22d69724f4 py-fiona: add v1.10.0 (#46196) 2024-09-04 09:36:43 -07:00
Adam J. Stewart
f6e3f6eec7 py-numpy: add v2.1.1 (#46197) 2024-09-04 09:33:07 -07:00
G-Ragghianti
866c440f0c Updating git repo location (#46183) 2024-09-04 10:34:05 -05:00
Juan Miguel Carceller
fe6f5b87dc texlive: clean up recipe (#45863)
* texlive: clean up recipe

* Update the poppler dependency

* Fix typo

---------

Co-authored-by: jmcarcell <jmcarcell@users.noreply.github.com>
2024-09-04 10:20:23 -05:00
Vicente Bolea
3df3f40984 paraview: add new v5.13.0 release (#46091) 2024-09-04 10:14:52 -05:00
Satish Balay
33f4a40df4 trilinos: update @[master,develop] dependency on kokkos (#46182)
==> Error: InstallError: For Trilinos@[master,develop], ^kokkos version in spec must match version in Trilinos source code. Specify ^kokkos@4.4.00 for trilinos@[master,develop] instead of ^kokkos@4.3.01.
2024-09-04 07:34:20 -06:00
Kyle Knoepfel
7ba0132f66 llvm: improve detection regexes (#46187) 2024-09-04 04:12:42 -06:00
Mikael Simberg
744f034dfb Add conflict between llvm-amdgpu until version 5 and ninja since version 1.12.0 (#45788)
* Add conflict between llvm-amdgpu and ninja since version 1.12.0

* Update llvm-amdgpu and ninja conflict to extend to 6.0
2024-09-04 10:37:48 +02:00
Massimiliano Culpo
d41fb3d542 llvm: be more strict with detection (#46179) 2024-09-03 22:37:30 +02:00
Laurent Aphecetche
9b077a360e root: fix @loader_path on macOS (#44826)
* root: fix @loader_path on macOS

* root: use loader patch from upstream

Co-authored-by: Wouter Deconinck <wdconinc@gmail.com>

* add missing comma

* root: rm unused patch

* root: conflict on macos 12 for @:6.27 when +python

---------

Co-authored-by: Wouter Deconinck <wdconinc@gmail.com>
2024-09-03 09:50:31 -05:00
Stephen Nicholas Swatman
5c297d8322 root: fix X11 and OpenGL-related issues on macOS (#45632)
* root: Add dependency on libglx

We have been trying to build the Acts package on MacOS, and in this
process we have been running into problems with the ROOT spec on that
operating system; the primary issue we are encountering is that the
compiler is unable to find the `GL/glx.h` header, which is part of glx.
It seems, therefore, that ROOT depends on libglx, but this is not
currently encoded in the spec. This commit ensures that ROOT depends on
the virtual libglx package when both the OpenCL and X11 variants are
enabled.

* Enable builtin glew on MacOS

* Allow `root+opengl+aqua~x` on macOS
2024-09-03 08:32:17 -05:00
Massimiliano Culpo
9e18e63053 solver: minor cleanup and optimization (#46176)
Signed-off-by: Massimiliano Culpo <massimiliano.culpo@gmail.com>
2024-09-03 10:35:54 +00:00
Harmen Stoppels
069286bda7 database: remove a few class properties (#46175) 2024-09-03 11:22:14 +02:00
Richard Berger
1679b5e141 nvpl updates (#45922)
* nvpl-blas: add new version 0.3.0

* nvpl-lapack: add new version 0.2.3.1
2024-09-03 08:07:24 +02:00
Pierre Augier
1f935ac356 Add py-pytest-allclose package (#45877) 2024-09-02 14:34:24 -06:00
Pariksheet Nanda
e66e572656 py-cellprofiler: add 4.2.6 new package (#44824)
* py-cellprofiler: add 4.2.6 new package

* py-mysqlclient: Limit pkg-config patch to @1.4:

Co-authored-by: Wouter Deconinck <wdconinc@gmail.com>

---------

Co-authored-by: Wouter Deconinck <wdconinc@gmail.com>
2024-09-02 14:21:39 -05:00
JCGoran
17d3d17d46 py-sympy: add version 1.13.0 (#46163)
* sympy: add version 1.13.0

* sympy: update deps
2024-09-02 09:51:44 -06:00
Thomas Madlener
c814fb5fe6 podio: Add the new datasource variant once it is available (#46078)
* podio: Add the new datasource variant once it is available

* Make sure to require a suitable minimal root version
2024-09-02 08:39:43 -05:00
Harmen Stoppels
fe2d06399f db: type hints (#46168) 2024-09-02 14:44:49 +02:00
Harmen Stoppels
b5dec35113 projections: simplify expression (#46167) 2024-09-02 12:38:47 +00:00
Harmen Stoppels
20565ba8ab remove dead code: fs.is_writable_dir was used on file (#46166) 2024-09-02 11:55:40 +00:00
Wouter Deconinck
c47a3ee05b package_base: sort deprecated versions later in preferred_version (#46025) 2024-09-02 10:42:15 +00:00
Wouter Deconinck
aaa7469b92 py-vector: add v1.4.2, v1.5.0; variant awkward (#46039) 2024-09-02 09:41:15 +02:00
Asher Mancinelli
1f8a6d8e8b [neovim] add utf8proc dependency (#46064)
I believe utf8proc was added as a neovim dependency in neovim/neovim#26165
and is only in the master branch.
2024-09-02 09:28:30 +02:00
Richard Berger
654bf45c01 kokkos-nvcc-wrapper: add new 4.4.00 version (#46067) 2024-09-02 09:27:13 +02:00
Wouter Deconinck
daa42be47f ddt: deprecate all versions in favor of linaro-forge (#46115) 2024-09-02 09:15:47 +02:00
Satish Balay
ca179deb8e petsc, py-petsc4py: add v3.21.5 (#46151) 2024-09-02 09:09:05 +02:00
Satish Balay
8f6092bf83 xsdk: remove develop and 0.7.0, and deprecate 0.8.0 (#46121) 2024-09-02 09:04:36 +02:00
pauleonix
6b649ccf4f cuda: add v12.6.1 (#46143)
Update build system conflict between CUDA 12.6 and Clang 18
2024-09-02 08:46:03 +02:00
Georgia Stuart
d463d4566d docs: update conditional definition arch (#46139)
Signed-off-by: Georgia Stuart <gstuart@umass.edu>

Co-authored-by: Jordan Galby <67924449+Jordan474@users.noreply.github.com>
2024-09-02 08:32:26 +02:00
Adam J. Stewart
f79be3022b py-torchgeo: add v0.6.0 (#46158) 2024-09-02 08:30:02 +02:00
eugeneswalker
7327e731b4 e4s ci stacks: add geopm-runtime (#45881) 2024-09-02 08:24:10 +02:00
Adam J. Stewart
ab6d494fe4 py-horovod: py-torch 2.1.0 now supported (#46152) 2024-09-02 08:21:16 +02:00
Christophe Prud'homme
e5aa74e7cb package cln 1.3.7 feelpp/spack#2 (#46162)
* package cln 1.3.7 feelpp/spack#2

* add myself as maintainer

* fix style issue, rm blankline
2024-09-01 22:38:26 -05:00
Gavin John
728f8e2654 nanomath: add version 1.4.0 (#46159) 2024-09-01 17:23:57 -06:00
Stephen Sachs
9a58a6da0d [openmpi] Add optional debug build variant (#45708) 2024-09-01 11:02:04 -05:00
Stephen Nicholas Swatman
395491815a dd4hep: mark conflict with root@6.31.1: (#45855)
dd4hep versions up to and including 1.27 had a conflict with root
versions starting from 6.31.1, as shown in
https://github.com/AIDASoft/DD4hep/issues/1210. This PR explicitly adds
that conflict to the spec.
2024-09-01 10:54:20 -05:00
Joseph Wang
fd98ebed9d add rapidjson conflict for gcc14 (#46007) 2024-09-01 10:01:53 -05:00
Harmen Stoppels
f7de621d0c Remove redundant inspect.getmodule(self) idiom in packages (#46073) 2024-09-01 11:25:51 +02:00
dunatotatos
a5f404cff5 Update py-numcodecs. (#45715) 2024-08-31 15:15:18 -06:00
Martin Pokorny
8100b0d575 casacore: add new versions 3.6.1, 3.6.0, 3.2.1 (#46068) 2024-08-31 15:14:52 -06:00
Juan Miguel Carceller
b38ab54028 whizard: add a patch when using hepmc3 3.3.0 or newer (#45862)
* whizard: add a patch when using hepmc3 3.3.0 or newer

* whizard: comment with patch origin

---------

Co-authored-by: jmcarcell <jmcarcell@users.noreply.github.com>
Co-authored-by: Wouter Deconinck <wdconinc@gmail.com>
2024-08-31 13:13:42 -06:00
Stephen Nicholas Swatman
412f22b76a podio: apply patch for gcc 14 builds (#45854)
* podio: apply patch for gcc 14 builds

Podio versions after 0.17.0 but before 1.0.0 are broken when using gcc
14 because of a missing include, which is addressed in the podio pull
request at https://github.com/AIDASoft/podio/pull/600. This commit
patches pre-1.0.0 versions of Podio so they can be compiled with gcc 14,
which is important for building Acts.

* Style

* Style 2

* Fixes

* Add comment:

* Add sha256
2024-08-31 13:42:02 -05:00
Jen Herting
d226ef31bd New package: py-jsonlines (#46124)
* py-jsonlines: new package

* py-jsonlines: fix dependency

---------

Co-authored-by: Alex C Leute <acl2809@rit.edu>
2024-08-31 12:30:07 -05:00
Jen Herting
ae32af927d New package: py-ops (#46122)
* New package: py-ops

* [py-ops]

- added version 2.16.0
- ran black
- updated copyright
- added license()

---------

Co-authored-by: vehrc <vehrc@rit.edu>
2024-08-31 12:11:27 -05:00
Alex Richert
400dd40492 sigio: add v2.3.3 (#46116) 2024-08-31 12:01:08 -05:00
dependabot[bot]
04bdff33ad build(deps): bump actions/setup-python from 5.1.1 to 5.2.0 (#46129)
Bumps [actions/setup-python](https://github.com/actions/setup-python) from 5.1.1 to 5.2.0.
- [Release notes](https://github.com/actions/setup-python/releases)
- [Commits](39cd14951b...f677139bbe)

---
updated-dependencies:
- dependency-name: actions/setup-python
  dependency-type: direct:production
  update-type: version-update:semver-minor
...

Signed-off-by: dependabot[bot] <support@github.com>
Co-authored-by: dependabot[bot] <49699333+dependabot[bot]@users.noreply.github.com>
2024-08-31 11:51:49 -05:00
Pranav Sivaraman
017e3dd417 doctest: add new package (#46138) 2024-08-31 11:48:20 -05:00
Alex Richert
f7e3902ca8 landsfcutil: add v2.4.2 (#46144) 2024-08-31 09:13:10 -05:00
Alex Richert
89da8d4c84 gfsio: add v1.4.2 (#46145) 2024-08-31 09:12:23 -05:00
Alex Richert
8cac74699b sfcio: add v1.4.2 (#46146)
* sfcio: add v1.4.2

* [@spackbot] updating style on behalf of AlexanderRichert-NOAA
2024-08-31 09:11:13 -05:00
dependabot[bot]
db311eef46 build(deps): bump actions/upload-artifact from 4.3.6 to 4.4.0 (#46149)
Bumps [actions/upload-artifact](https://github.com/actions/upload-artifact) from 4.3.6 to 4.4.0.
- [Release notes](https://github.com/actions/upload-artifact/releases)
- [Commits](834a144ee9...50769540e7)

---
updated-dependencies:
- dependency-name: actions/upload-artifact
  dependency-type: direct:production
  update-type: version-update:semver-minor
...

Signed-off-by: dependabot[bot] <support@github.com>
Co-authored-by: dependabot[bot] <49699333+dependabot[bot]@users.noreply.github.com>
2024-08-31 08:38:16 -05:00
etiennemlb
1427735876 unzip: use more generic strip flag for cce (#46087)
* Use more generic strip flag for cce

* [@spackbot] updating style on behalf of etiennemlb

* Apply always
2024-08-30 12:57:24 -05:00
Kacper Kornet
f88ca8cc1f plumed: add v2.9.1 (#46022) 2024-08-30 15:29:49 +02:00
Massimiliano Culpo
bf1f4e15ee boost: remove Compiler.cxx_names (#46037) 2024-08-30 13:25:40 +02:00
Harmen Stoppels
dd756d53de windows-vis: fix failing pipeline (#46135)
* seacas: fix gnu parallel dep

* add vtk@9.0 platform=windows conflict
2024-08-30 12:57:16 +02:00
Massimiliano Culpo
1c1970e727 Put some more constraint on a few mpi providers (#46132)
This should help not selecting, by default, some niche implementation that are supposed to be externals.

Signed-off-by: Massimiliano Culpo <massimiliano.culpo@gmail.com>
2024-08-30 11:16:35 +02:00
Massimiliano Culpo
c283fce487 Remove DetectedPackage class (#46071)
This PR simplifies the code doing external spec detection by removing 
the `DetectedPackage` class. Now, functions accepting or returning lists 
of `DetectedPackage`, will accept or return list of specs.

Performance doesn't seem to change if we use `Spec.__reduce__` instead 
of `DetectionPackage.__reduce__`.
2024-08-30 08:11:17 +00:00
816 changed files with 9307 additions and 6542 deletions

View File

@@ -1,4 +1,5 @@
{
"name": "Ubuntu 20.04",
"image": "ghcr.io/spack/ubuntu20.04-runner-amd64-gcc-11.4:2023.08.01",
"postCreateCommand": "./.devcontainer/postCreateCommand.sh"
}

View File

@@ -0,0 +1,5 @@
{
"name": "Ubuntu 22.04",
"image": "ghcr.io/spack/ubuntu-22.04:v2024-05-07",
"postCreateCommand": "./.devcontainer/postCreateCommand.sh"
}

View File

@@ -29,7 +29,7 @@ jobs:
shell: ${{ matrix.system.shell }}
steps:
- uses: actions/checkout@692973e3d937129bcbf40652eb9f2f61becf3332
- uses: actions/setup-python@39cd14951b08e74b54015e9e001cdefcf80e669f
- uses: actions/setup-python@f677139bbe7f9c59b41e40162b753c062f5d49a3
with:
python-version: ${{inputs.python_version}}
- name: Install Python packages
@@ -40,6 +40,8 @@ jobs:
run: |
python -m pip install --upgrade pywin32
- name: Package audits (with coverage)
env:
COVERAGE_FILE: coverage/.coverage-audits-${{ matrix.system.os }}
if: ${{ inputs.with_coverage == 'true' && runner.os != 'Windows' }}
run: |
. share/spack/setup-env.sh
@@ -47,27 +49,26 @@ jobs:
coverage run $(which spack) audit configs
coverage run $(which spack) -d audit externals
coverage combine
coverage xml
- name: Package audits (without coverage)
if: ${{ inputs.with_coverage == 'false' && runner.os != 'Windows' }}
run: |
. share/spack/setup-env.sh
. share/spack/setup-env.sh
spack -d audit packages
spack -d audit configs
spack -d audit externals
- name: Package audits (without coverage)
if: ${{ runner.os == 'Windows' }}
run: |
. share/spack/setup-env.sh
. share/spack/setup-env.sh
spack -d audit packages
./share/spack/qa/validate_last_exit.ps1
spack -d audit configs
./share/spack/qa/validate_last_exit.ps1
spack -d audit externals
./share/spack/qa/validate_last_exit.ps1
- uses: codecov/codecov-action@e28ff129e5465c2c0dcc6f003fc735cb6ae0c673
if: ${{ inputs.with_coverage == 'true' }}
- uses: actions/upload-artifact@50769540e7f4bd5e21e526ee35c689e35e0d6874
if: ${{ inputs.with_coverage == 'true' && runner.os != 'Windows' }}
with:
flags: unittests,audits
token: ${{ secrets.CODECOV_TOKEN }}
verbose: true
name: coverage-audits-${{ matrix.system.os }}
path: coverage
include-hidden-files: true

View File

@@ -63,7 +63,7 @@ jobs:
uses: actions/checkout@692973e3d937129bcbf40652eb9f2f61becf3332
with:
fetch-depth: 0
- uses: actions/setup-python@39cd14951b08e74b54015e9e001cdefcf80e669f
- uses: actions/setup-python@f677139bbe7f9c59b41e40162b753c062f5d49a3
with:
python-version: "3.12"
- name: Bootstrap clingo
@@ -112,10 +112,10 @@ jobs:
runs-on: ${{ matrix.runner }}
strategy:
matrix:
runner: ['macos-13', 'macos-14', "ubuntu-latest"]
runner: ['macos-13', 'macos-14', "ubuntu-latest", "windows-latest"]
steps:
- name: Setup macOS
if: ${{ matrix.runner != 'ubuntu-latest' }}
if: ${{ matrix.runner != 'ubuntu-latest' && matrix.runner != 'windows-latest'}}
run: |
brew install tree
# Remove GnuPG since we want to bootstrap it
@@ -124,11 +124,16 @@ jobs:
if: ${{ matrix.runner == 'ubuntu-latest' }}
run: |
sudo rm -rf $(which gpg) $(which gpg2) $(which patchelf)
- name: Setup Windows
if: ${{ matrix.runner == 'windows-latest' }}
run: |
Remove-Item -Path (Get-Command gpg).Path
Remove-Item -Path (Get-Command file).Path
- name: Checkout
uses: actions/checkout@692973e3d937129bcbf40652eb9f2f61becf3332
with:
fetch-depth: 0
- uses: actions/setup-python@39cd14951b08e74b54015e9e001cdefcf80e669f
- uses: actions/setup-python@f677139bbe7f9c59b41e40162b753c062f5d49a3
with:
python-version: |
3.8
@@ -137,11 +142,20 @@ jobs:
3.11
3.12
- name: Set bootstrap sources
env:
SETUP_SCRIPT_EXT: ${{ matrix.runner == 'windows-latest' && 'ps1' || 'sh' }}
SETUP_SCRIPT_SOURCE: ${{ matrix.runner == 'windows-latest' && './' || 'source ' }}
run: |
${{ env.SETUP_SCRIPT_SOURCE }}share/spack/setup-env.${{ env.SETUP_SCRIPT_EXT }}
spack bootstrap disable github-actions-v0.4
- name: Disable from source bootstrap
if: ${{ matrix.runner != 'windows-latest' }}
run: |
source share/spack/setup-env.sh
spack bootstrap disable github-actions-v0.4
spack bootstrap disable spack-install
- name: Bootstrap clingo
# No binary clingo on Windows yet
if: ${{ matrix.runner != 'windows-latest' }}
run: |
set -e
for ver in '3.8' '3.9' '3.10' '3.11' '3.12' ; do
@@ -164,7 +178,24 @@ jobs:
fi
done
- name: Bootstrap GnuPG
env:
SETUP_SCRIPT_EXT: ${{ matrix.runner == 'windows-latest' && 'ps1' || 'sh' }}
SETUP_SCRIPT_SOURCE: ${{ matrix.runner == 'windows-latest' && './' || 'source ' }}
USER_SCOPE_PARENT_DIR: ${{ matrix.runner == 'windows-latest' && '$env:userprofile' || '$HOME' }}
VALIDATE_LAST_EXIT: ${{ matrix.runner == 'windows-latest' && './share/spack/qa/validate_last_exit.ps1' || '' }}
run: |
source share/spack/setup-env.sh
${{ env.SETUP_SCRIPT_SOURCE }}share/spack/setup-env.${{ env.SETUP_SCRIPT_EXT }}
spack -d gpg list
tree ~/.spack/bootstrap/store/
${{ env.VALIDATE_LAST_EXIT }}
tree ${{ env.USER_SCOPE_PARENT_DIR }}/.spack/bootstrap/store/
- name: Bootstrap File
env:
SETUP_SCRIPT_EXT: ${{ matrix.runner == 'windows-latest' && 'ps1' || 'sh' }}
SETUP_SCRIPT_SOURCE: ${{ matrix.runner == 'windows-latest' && './' || 'source ' }}
USER_SCOPE_PARENT_DIR: ${{ matrix.runner == 'windows-latest' && '$env:userprofile' || '$HOME' }}
VALIDATE_LAST_EXIT: ${{ matrix.runner == 'windows-latest' && './share/spack/qa/validate_last_exit.ps1' || '' }}
run: |
${{ env.SETUP_SCRIPT_SOURCE }}share/spack/setup-env.${{ env.SETUP_SCRIPT_EXT }}
spack -d python share/spack/qa/bootstrap-file.py
${{ env.VALIDATE_LAST_EXIT }}
tree ${{ env.USER_SCOPE_PARENT_DIR }}/.spack/bootstrap/store/

View File

@@ -87,7 +87,7 @@ jobs:
fi
- name: Upload Dockerfile
uses: actions/upload-artifact@834a144ee995460fba8ed112a2fc961b36a5ec5a
uses: actions/upload-artifact@50769540e7f4bd5e21e526ee35c689e35e0d6874
with:
name: dockerfiles_${{ matrix.dockerfile[0] }}
path: dockerfiles
@@ -126,7 +126,7 @@ jobs:
needs: deploy-images
steps:
- name: Merge Artifacts
uses: actions/upload-artifact/merge@834a144ee995460fba8ed112a2fc961b36a5ec5a
uses: actions/upload-artifact/merge@50769540e7f4bd5e21e526ee35c689e35e0d6874
with:
name: dockerfiles
pattern: dockerfiles_*

View File

@@ -84,8 +84,30 @@ jobs:
needs: [ prechecks, changes ]
uses: ./.github/workflows/unit_tests.yaml
secrets: inherit
upload-coverage:
needs: [ unit-tests, prechecks ]
runs-on: ubuntu-latest
steps:
- uses: actions/checkout@692973e3d937129bcbf40652eb9f2f61becf3332
with:
fetch-depth: 0
- name: Download coverage files
uses: actions/download-artifact@fa0a91b85d4f404e444e00e005971372dc801d16
with:
pattern: coverage-*
path: coverage
merge-multiple: true
- run: pip install --upgrade coverage
- run: ls -la coverage
- run: coverage combine -a coverage/.coverage*
- run: coverage xml
- name: "Upload coverage"
uses: codecov/codecov-action@e28ff129e5465c2c0dcc6f003fc735cb6ae0c673
with:
token: ${{ secrets.CODECOV_TOKEN }}
verbose: true
all:
needs: [ unit-tests, bootstrap ]
needs: [ upload-coverage, bootstrap ]
runs-on: ubuntu-latest
steps:
- name: Success

View File

@@ -17,7 +17,7 @@ jobs:
- uses: actions/checkout@692973e3d937129bcbf40652eb9f2f61becf3332
with:
fetch-depth: 0
- uses: actions/setup-python@39cd14951b08e74b54015e9e001cdefcf80e669f
- uses: actions/setup-python@f677139bbe7f9c59b41e40162b753c062f5d49a3
with:
python-version: 3.9
- name: Install Python packages

View File

@@ -43,7 +43,7 @@ jobs:
- uses: actions/checkout@692973e3d937129bcbf40652eb9f2f61becf3332
with:
fetch-depth: 0
- uses: actions/setup-python@39cd14951b08e74b54015e9e001cdefcf80e669f
- uses: actions/setup-python@f677139bbe7f9c59b41e40162b753c062f5d49a3
with:
python-version: ${{ matrix.python-version }}
- name: Install System packages
@@ -76,14 +76,15 @@ jobs:
SPACK_PYTHON: python
SPACK_TEST_PARALLEL: 2
COVERAGE: true
COVERAGE_FILE: coverage/.coverage-${{ matrix.os }}-python${{ matrix.python-version }}
UNIT_TEST_COVERAGE: ${{ matrix.python-version == '3.11' }}
run: |
share/spack/qa/run-unit-tests
- uses: codecov/codecov-action@e28ff129e5465c2c0dcc6f003fc735cb6ae0c673
- uses: actions/upload-artifact@50769540e7f4bd5e21e526ee35c689e35e0d6874
with:
flags: unittests,linux,${{ matrix.concretizer }}
token: ${{ secrets.CODECOV_TOKEN }}
verbose: true
name: coverage-${{ matrix.os }}-python${{ matrix.python-version }}
path: coverage
include-hidden-files: true
# Test shell integration
shell:
runs-on: ubuntu-latest
@@ -91,7 +92,7 @@ jobs:
- uses: actions/checkout@692973e3d937129bcbf40652eb9f2f61becf3332
with:
fetch-depth: 0
- uses: actions/setup-python@39cd14951b08e74b54015e9e001cdefcf80e669f
- uses: actions/setup-python@f677139bbe7f9c59b41e40162b753c062f5d49a3
with:
python-version: '3.11'
- name: Install System packages
@@ -112,11 +113,11 @@ jobs:
COVERAGE: true
run: |
share/spack/qa/run-shell-tests
- uses: codecov/codecov-action@e28ff129e5465c2c0dcc6f003fc735cb6ae0c673
- uses: actions/upload-artifact@50769540e7f4bd5e21e526ee35c689e35e0d6874
with:
flags: shelltests,linux
token: ${{ secrets.CODECOV_TOKEN }}
verbose: true
name: coverage-shell
path: coverage
include-hidden-files: true
# Test RHEL8 UBI with platform Python. This job is run
# only on PRs modifying core Spack
@@ -151,7 +152,7 @@ jobs:
- uses: actions/checkout@692973e3d937129bcbf40652eb9f2f61becf3332
with:
fetch-depth: 0
- uses: actions/setup-python@39cd14951b08e74b54015e9e001cdefcf80e669f
- uses: actions/setup-python@f677139bbe7f9c59b41e40162b753c062f5d49a3
with:
python-version: '3.11'
- name: Install System packages
@@ -170,13 +171,14 @@ jobs:
- name: Run unit tests (full suite with coverage)
env:
COVERAGE: true
COVERAGE_FILE: coverage/.coverage-clingo-cffi
run: |
share/spack/qa/run-unit-tests
- uses: codecov/codecov-action@e28ff129e5465c2c0dcc6f003fc735cb6ae0c673
- uses: actions/upload-artifact@50769540e7f4bd5e21e526ee35c689e35e0d6874
with:
flags: unittests,linux,clingo
token: ${{ secrets.CODECOV_TOKEN }}
verbose: true
name: coverage-clingo-cffi
path: coverage
include-hidden-files: true
# Run unit tests on MacOS
macos:
runs-on: ${{ matrix.os }}
@@ -188,7 +190,7 @@ jobs:
- uses: actions/checkout@692973e3d937129bcbf40652eb9f2f61becf3332
with:
fetch-depth: 0
- uses: actions/setup-python@39cd14951b08e74b54015e9e001cdefcf80e669f
- uses: actions/setup-python@f677139bbe7f9c59b41e40162b753c062f5d49a3
with:
python-version: ${{ matrix.python-version }}
- name: Install Python packages
@@ -201,6 +203,7 @@ jobs:
- name: Run unit tests
env:
SPACK_TEST_PARALLEL: 4
COVERAGE_FILE: coverage/.coverage-${{ matrix.os }}-python${{ matrix.python-version }}
run: |
git --version
. .github/workflows/bin/setup_git.sh
@@ -209,11 +212,11 @@ jobs:
$(which spack) solve zlib
common_args=(--dist loadfile --tx '4*popen//python=./bin/spack-tmpconfig python -u ./bin/spack python' -x)
$(which spack) unit-test --verbose --cov --cov-config=pyproject.toml --cov-report=xml:coverage.xml "${common_args[@]}"
- uses: codecov/codecov-action@e28ff129e5465c2c0dcc6f003fc735cb6ae0c673
- uses: actions/upload-artifact@50769540e7f4bd5e21e526ee35c689e35e0d6874
with:
flags: unittests,macos
token: ${{ secrets.CODECOV_TOKEN }}
verbose: true
name: coverage-${{ matrix.os }}-python${{ matrix.python-version }}
path: coverage
include-hidden-files: true
# Run unit tests on Windows
windows:
defaults:
@@ -225,7 +228,7 @@ jobs:
- uses: actions/checkout@692973e3d937129bcbf40652eb9f2f61becf3332
with:
fetch-depth: 0
- uses: actions/setup-python@39cd14951b08e74b54015e9e001cdefcf80e669f
- uses: actions/setup-python@f677139bbe7f9c59b41e40162b753c062f5d49a3
with:
python-version: 3.9
- name: Install Python packages
@@ -235,13 +238,13 @@ jobs:
run: |
./.github/workflows/bin/setup_git.ps1
- name: Unit Test
env:
COVERAGE_FILE: coverage/.coverage-windows
run: |
spack unit-test -x --verbose --cov --cov-config=pyproject.toml
./share/spack/qa/validate_last_exit.ps1
coverage combine -a
coverage xml
- uses: codecov/codecov-action@e28ff129e5465c2c0dcc6f003fc735cb6ae0c673
- uses: actions/upload-artifact@50769540e7f4bd5e21e526ee35c689e35e0d6874
with:
flags: unittests,windows
token: ${{ secrets.CODECOV_TOKEN }}
verbose: true
name: coverage-windows
path: coverage
include-hidden-files: true

View File

@@ -19,7 +19,7 @@ jobs:
runs-on: ubuntu-latest
steps:
- uses: actions/checkout@692973e3d937129bcbf40652eb9f2f61becf3332
- uses: actions/setup-python@39cd14951b08e74b54015e9e001cdefcf80e669f
- uses: actions/setup-python@f677139bbe7f9c59b41e40162b753c062f5d49a3
with:
python-version: '3.11'
cache: 'pip'
@@ -38,7 +38,7 @@ jobs:
- uses: actions/checkout@692973e3d937129bcbf40652eb9f2f61becf3332
with:
fetch-depth: 0
- uses: actions/setup-python@39cd14951b08e74b54015e9e001cdefcf80e669f
- uses: actions/setup-python@f677139bbe7f9c59b41e40162b753c062f5d49a3
with:
python-version: '3.11'
cache: 'pip'
@@ -87,3 +87,62 @@ jobs:
spack -d bootstrap now --dev
spack style -t black
spack unit-test -V
import-check:
runs-on: ubuntu-latest
steps:
- uses: julia-actions/setup-julia@v2
with:
version: '1.10'
- uses: julia-actions/cache@v2
# PR: use the base of the PR as the old commit
- name: Checkout PR base commit
if: github.event_name == 'pull_request'
uses: actions/checkout@692973e3d937129bcbf40652eb9f2f61becf3332
with:
ref: ${{ github.event.pull_request.base.sha }}
path: old
# not a PR: use the previous commit as the old commit
- name: Checkout previous commit
if: github.event_name != 'pull_request'
uses: actions/checkout@692973e3d937129bcbf40652eb9f2f61becf3332
with:
fetch-depth: 2
path: old
- name: Checkout previous commit
if: github.event_name != 'pull_request'
run: git -C old reset --hard HEAD^
- name: Checkout new commit
uses: actions/checkout@692973e3d937129bcbf40652eb9f2f61becf3332
with:
path: new
- name: Install circular import checker
uses: actions/checkout@692973e3d937129bcbf40652eb9f2f61becf3332
with:
repository: haampie/circular-import-fighter
ref: 555519c6fd5564fd2eb844e7b87e84f4d12602e2
path: circular-import-fighter
- name: Install dependencies
working-directory: circular-import-fighter
run: make -j dependencies
- name: Import cycles before
working-directory: circular-import-fighter
run: make SPACK_ROOT=../old && cp solution solution.old
- name: Import cycles after
working-directory: circular-import-fighter
run: make clean-graph && make SPACK_ROOT=../new && cp solution solution.new
- name: Compare import cycles
working-directory: circular-import-fighter
run: |
edges_before="$(grep -oP 'edges to delete: \K\d+' solution.old)"
edges_after="$(grep -oP 'edges to delete: \K\d+' solution.new)"
if [ "$edges_after" -gt "$edges_before" ]; then
printf '\033[1;31mImport check failed: %s imports need to be deleted, ' "$edges_after"
printf 'previously this was %s\033[0m\n' "$edges_before"
printf 'Compare \033[1;97m"Import cycles before"\033[0m and '
printf '\033[1;97m"Import cycles after"\033[0m to see problematic imports.\n'
exit 1
else
printf '\033[1;32mImport check passed: %s <= %s\033[0m\n' "$edges_after" "$edges_before"
fi

View File

@@ -115,12 +115,6 @@ config:
suppress_gpg_warnings: false
# If set to true, Spack will attempt to build any compiler on the spec
# that is not already available. If set to False, Spack will only use
# compilers already configured in compilers.yaml
install_missing_compilers: false
# If set to true, Spack will always check checksums after downloading
# archives. If false, Spack skips the checksum step.
checksum: true

View File

@@ -72,3 +72,13 @@ packages:
permissions:
read: world
write: user
cray-mpich:
buildable: false
cray-mvapich2:
buildable: false
fujitsu-mpi:
buildable: false
hpcx-mpi:
buildable: false
spectrum-mpi:
buildable: false

View File

@@ -1175,6 +1175,17 @@ unspecified version, but packages can depend on other packages with
could depend on ``mpich@1.2:`` if it can only build with version
``1.2`` or higher of ``mpich``.
.. note:: Windows Spec Syntax Caveats
Windows has a few idiosyncrasies when it comes to the Spack spec syntax and the use of certain shells
Spack's spec dependency syntax uses the carat (``^``) character, however this is an escape string in CMD
so it must be escaped with an additional carat (i.e. ``^^``).
CMD also will attempt to interpret strings with ``=`` characters in them. Any spec including this symbol
must double quote the string.
Note: All of these issues are unique to CMD, they can be avoided by using Powershell.
For more context on these caveats see the related issues: `carat <https://github.com/spack/spack/issues/42833>`_ and `equals <https://github.com/spack/spack/issues/43348>`_
Below are more details about the specifiers that you can add to specs.
.. _version-specifier:

View File

@@ -5,9 +5,9 @@
.. chain:
============================
Chaining Spack Installations
============================
=============================================
Chaining Spack Installations (upstreams.yaml)
=============================================
You can point your Spack installation to another installation to use any
packages that are installed there. To register the other Spack instance,

View File

@@ -218,6 +218,7 @@ def setup(sphinx):
("py:class", "spack.spec.SpecfileReaderBase"),
("py:class", "spack.install_test.Pb"),
("py:class", "spack.filesystem_view.SimpleFilesystemView"),
("py:class", "spack.traverse.EdgeAndDepth"),
]
# The reST default role (used for this markup: `text`) to use for all documents.

View File

@@ -181,10 +181,6 @@ Spec-related modules
:mod:`spack.parser`
Contains :class:`~spack.parser.SpecParser` and functions related to parsing specs.
:mod:`spack.concretize`
Contains :class:`~spack.concretize.Concretizer` implementation,
which allows site administrators to change Spack's :ref:`concretization-policies`.
:mod:`spack.version`
Implements a simple :class:`~spack.version.Version` class with simple
comparison semantics. Also implements :class:`~spack.version.VersionRange`

View File

@@ -863,7 +863,7 @@ named list ``compilers`` is ``['%gcc', '%clang', '%intel']`` on
spack:
definitions:
- compilers: ['%gcc', '%clang']
- when: arch.satisfies('x86_64:')
- when: arch.satisfies('target=x86_64:')
compilers: ['%intel']
.. note::
@@ -893,9 +893,8 @@ The valid variables for a ``when`` clause are:
#. ``env``. The user environment (usually ``os.environ`` in Python).
#. ``hostname``. The hostname of the system.
#. ``full_hostname``. The fully qualified hostname of the system.
#. ``hostname``. The hostname of the system (if ``hostname`` is an
executable in the user's PATH).
^^^^^^^^^^^^^^^^^^^^^^^^
SpecLists as Constraints

View File

@@ -1475,16 +1475,14 @@ in a Windows CMD prompt.
Step 3: Run and configure Spack
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
To use Spack, run ``bin\spack_cmd.bat`` (you may need to Run as Administrator) from the top-level spack
directory. This will provide a Windows command prompt with an environment properly set up with Spack
and its prerequisites. If you receive a warning message that Python is not in your ``PATH``
On Windows, Spack supports both primary native shells, Powershell and the traditional command prompt.
To use Spack, pick your favorite shell, and run ``bin\spack_cmd.bat`` or ``share/spack/setup-env.ps1``
(you may need to Run as Administrator) from the top-level spack
directory. This will provide a Spack enabled shell. If you receive a warning message that Python is not in your ``PATH``
(which may happen if you installed Python from the website and not the Windows Store) add the location
of the Python executable to your ``PATH`` now. You can permanently add Python to your ``PATH`` variable
by using the ``Edit the system environment variables`` utility in Windows Control Panel.
.. note::
Alternatively, Powershell can be used in place of CMD
To configure Spack, first run the following command inside the Spack console:
.. code-block:: console
@@ -1549,7 +1547,7 @@ and not tabs, so ensure that this is the case when editing one directly.
.. note:: Cygwin
The use of Cygwin is not officially supported by Spack and is not tested.
However Spack will not throw an error, so use if choosing to use Spack
However Spack will not prevent this, so use if choosing to use Spack
with Cygwin, know that no functionality is garunteed.
^^^^^^^^^^^^^^^^^
@@ -1563,21 +1561,12 @@ Spack console via:
spack install cpuinfo
If in the previous step, you did not have CMake or Ninja installed, running the command above should bootstrap both packages
If in the previous step, you did not have CMake or Ninja installed, running the command above should install both packages
"""""""""""""""""""""""""""
Windows Compatible Packages
"""""""""""""""""""""""""""
.. note:: Spec Syntax Caveats
Windows has a few idiosyncrasies when it comes to the Spack spec syntax and the use of certain shells
See the Spack spec syntax doc for more information
Not all spack packages currently have Windows support. Some are inherently incompatible with the
platform, and others simply have yet to be ported. To view the current set of packages with Windows
support, the list command should be used via `spack list -t windows`. If there's a package you'd like
to install on Windows but is not in that list, feel free to reach out to request the port or contribute
the port yourself.
.. note::
This is by no means a comprehensive list, some packages may have ports that were not tagged
while others may just work out of the box on Windows and have not been tagged as such.
^^^^^^^^^^^^^^
For developers
@@ -1588,5 +1577,3 @@ Python, Git, and Spack, instead of requiring the user to do so manually.
Instructions for creating the installer are at
https://github.com/spack/spack/blob/develop/lib/spack/spack/cmd/installer/README.md
Alternatively a pre-built copy of the Windows installer is available as an artifact of Spack's Windows CI
available at each run of the CI on develop or any PR.

View File

@@ -663,11 +663,7 @@ build the package.
When including a bootstrapping phase as in the example above, the result is that
the bootstrapped compiler packages will be pushed to the binary mirror (and the
local artifacts mirror) before the actual release specs are built. In this case,
the jobs corresponding to subsequent release specs are configured to
``install_missing_compilers``, so that if spack is asked to install a package
with a compiler it doesn't know about, it can be quickly installed from the
binary mirror first.
local artifacts mirror) before the actual release specs are built.
Since bootstrapping compilers is optional, those items can be left out of the
environment/stack file, and in that case no bootstrapping will be done (only the

View File

@@ -5,8 +5,8 @@ sphinx-rtd-theme==2.0.0
python-levenshtein==0.25.1
docutils==0.20.1
pygments==2.18.0
urllib3==2.2.2
pytest==8.3.2
urllib3==2.2.3
pytest==8.3.3
isort==5.13.2
black==24.8.0
flake8==7.1.1

View File

@@ -18,7 +18,7 @@
* Homepage: https://pypi.python.org/pypi/archspec
* Usage: Labeling, comparison and detection of microarchitectures
* Version: 0.2.5-dev (commit 7e6740012b897ae4a950f0bba7e9726b767e921f)
* Version: 0.2.5-dev (commit cbb1fd5eb397a70d466e5160b393b87b0dbcc78f)
astunparse
----------------

View File

@@ -2844,8 +2844,7 @@
"asimdrdm",
"lrcpc",
"dcpop",
"asimddp",
"ssbs"
"asimddp"
],
"compilers" : {
"gcc": [
@@ -2942,7 +2941,6 @@
"uscat",
"ilrcpc",
"flagm",
"ssbs",
"dcpodp",
"svei8mm",
"svebf16",
@@ -3010,7 +3008,7 @@
},
{
"versions": "11:",
"flags" : "-march=armv8.4-a+sve+ssbs+fp16+bf16+crypto+i8mm+rng"
"flags" : "-march=armv8.4-a+sve+fp16+bf16+crypto+i8mm+rng"
},
{
"versions": "12:",
@@ -3066,7 +3064,6 @@
"uscat",
"ilrcpc",
"flagm",
"ssbs",
"sb",
"dcpodp",
"sve2",
@@ -3179,7 +3176,6 @@
"uscat",
"ilrcpc",
"flagm",
"ssbs",
"sb",
"dcpodp",
"sve2",

View File

@@ -27,8 +27,6 @@
from llnl.util.lang import dedupe, memoized
from llnl.util.symlink import islink, readlink, resolve_link_target_relative_to_the_link, symlink
from spack.util.executable import Executable, which
from ..path import path_to_os_path, system_path_filter
if sys.platform != "win32":
@@ -53,7 +51,6 @@
"find_all_headers",
"find_libraries",
"find_system_libraries",
"fix_darwin_install_name",
"force_remove",
"force_symlink",
"getuid",
@@ -248,42 +245,6 @@ def path_contains_subdirectory(path, root):
return norm_path.startswith(norm_root)
@memoized
def file_command(*args):
"""Creates entry point to `file` system command with provided arguments"""
file_cmd = which("file", required=True)
for arg in args:
file_cmd.add_default_arg(arg)
return file_cmd
@memoized
def _get_mime_type():
"""Generate method to call `file` system command to aquire mime type
for a specified path
"""
if sys.platform == "win32":
# -h option (no-dereference) does not exist in Windows
return file_command("-b", "--mime-type")
else:
return file_command("-b", "-h", "--mime-type")
def mime_type(filename):
"""Returns the mime type and subtype of a file.
Args:
filename: file to be analyzed
Returns:
Tuple containing the MIME type and subtype
"""
output = _get_mime_type()(filename, output=str, error=str).strip()
tty.debug("==> " + output)
type, _, subtype = output.partition("/")
return type, subtype
#: This generates the library filenames that may appear on any OS.
library_extensions = ["a", "la", "so", "tbd", "dylib"]
@@ -1679,41 +1640,6 @@ def safe_remove(*files_or_dirs):
raise
@system_path_filter
def fix_darwin_install_name(path):
"""Fix install name of dynamic libraries on Darwin to have full path.
There are two parts of this task:
1. Use ``install_name('-id', ...)`` to change install name of a single lib
2. Use ``install_name('-change', ...)`` to change the cross linking between
libs. The function assumes that all libraries are in one folder and
currently won't follow subfolders.
Parameters:
path (str): directory in which .dylib files are located
"""
libs = glob.glob(join_path(path, "*.dylib"))
for lib in libs:
# fix install name first:
install_name_tool = Executable("install_name_tool")
install_name_tool("-id", lib, lib)
otool = Executable("otool")
long_deps = otool("-L", lib, output=str).split("\n")
deps = [dep.partition(" ")[0][1::] for dep in long_deps[2:-1]]
# fix all dependencies:
for dep in deps:
for loc in libs:
# We really want to check for either
# dep == os.path.basename(loc) or
# dep == join_path(builddir, os.path.basename(loc)),
# but we don't know builddir (nor how symbolic links look
# in builddir). We thus only compare the basenames.
if os.path.basename(dep) == os.path.basename(loc):
install_name_tool("-change", dep, loc, lib)
break
def find_first(root: str, files: Union[Iterable[str], str], bfs_depth: int = 2) -> Optional[str]:
"""Find the first file matching a pattern.

View File

@@ -3,6 +3,13 @@
#
# SPDX-License-Identifier: (Apache-2.0 OR MIT)
import os
import re
from typing import Optional
import spack.paths
import spack.util.git
#: PEP440 canonical <major>.<minor>.<micro>.<devN> string
__version__ = "0.23.0.dev0"
spack_version = __version__
@@ -19,4 +26,47 @@ def __try_int(v):
spack_version_info = tuple([__try_int(v) for v in __version__.split(".")])
__all__ = ["spack_version_info", "spack_version"]
def get_spack_commit() -> Optional[str]:
"""Get the Spack git commit sha.
Returns:
(str or None) the commit sha if available, otherwise None
"""
git_path = os.path.join(spack.paths.prefix, ".git")
if not os.path.exists(git_path):
return None
git = spack.util.git.git()
if not git:
return None
rev = git(
"-C",
spack.paths.prefix,
"rev-parse",
"HEAD",
output=str,
error=os.devnull,
fail_on_error=False,
)
if git.returncode != 0:
return None
match = re.match(r"[a-f\d]{7,}$", rev)
return match.group(0) if match else None
def get_version() -> str:
"""Get a descriptive version of this instance of Spack.
Outputs '<PEP440 version> (<git commit sha>)'.
The commit sha is only added when available.
"""
commit = get_spack_commit()
if commit:
return f"{spack_version} ({commit})"
return spack_version
__all__ = ["spack_version_info", "spack_version", "get_version", "get_spack_commit"]

View File

@@ -46,11 +46,14 @@ def _search_duplicate_compilers(error_cls):
import pickle
import re
import warnings
from typing import Iterable, List, Set, Tuple
from urllib.request import urlopen
import llnl.util.lang
import spack.builder
import spack.config
import spack.fetch_strategy
import spack.patch
import spack.repo
import spack.spec
@@ -73,7 +76,9 @@ def __init__(self, summary, details):
self.details = tuple(details)
def __str__(self):
return self.summary + "\n" + "\n".join([" " + detail for detail in self.details])
if self.details:
return f"{self.summary}\n" + "\n".join(f" {detail}" for detail in self.details)
return self.summary
def __eq__(self, other):
if self.summary != other.summary or self.details != other.details:
@@ -257,40 +262,6 @@ def _search_duplicate_specs_in_externals(error_cls):
return errors
@config_packages
def _deprecated_preferences(error_cls):
"""Search package preferences deprecated in v0.21 (and slated for removal in v0.23)"""
# TODO (v0.23): remove this audit as the attributes will not be allowed in config
errors = []
packages_yaml = spack.config.CONFIG.get_config("packages")
def make_error(attribute_name, config_data, summary):
s = io.StringIO()
s.write("Occurring in the following file:\n")
dict_view = syaml.syaml_dict((k, v) for k, v in config_data.items() if k == attribute_name)
syaml.dump_config(dict_view, stream=s, blame=True)
return error_cls(summary=summary, details=[s.getvalue()])
if "all" in packages_yaml and "version" in packages_yaml["all"]:
summary = "Using the deprecated 'version' attribute under 'packages:all'"
errors.append(make_error("version", packages_yaml["all"], summary))
for package_name in packages_yaml:
if package_name == "all":
continue
package_conf = packages_yaml[package_name]
for attribute in ("compiler", "providers", "target"):
if attribute not in package_conf:
continue
summary = (
f"Using the deprecated '{attribute}' attribute " f"under 'packages:{package_name}'"
)
errors.append(make_error(attribute, package_conf, summary))
return errors
@config_packages
def _avoid_mismatched_variants(error_cls):
"""Warns if variant preferences have mismatched types or names."""
@@ -311,7 +282,7 @@ def _avoid_mismatched_variants(error_cls):
pkg_cls = spack.repo.PATH.get_pkg_class(pkg_name)
for variant in current_spec.variants.values():
# Variant does not exist at all
if variant.name not in pkg_cls.variants:
if variant.name not in pkg_cls.variant_names():
summary = (
f"Setting a preference for the '{pkg_name}' package to the "
f"non-existing variant '{variant.name}'"
@@ -320,9 +291,8 @@ def _avoid_mismatched_variants(error_cls):
continue
# Variant cannot accept this value
s = spack.spec.Spec(pkg_name)
try:
s.update_variant_validate(variant.name, variant.value)
spack.variant.prevalidate_variant_value(pkg_cls, variant, strict=True)
except Exception:
summary = (
f"Setting the variant '{variant.name}' of the '{pkg_name}' package "
@@ -692,9 +662,15 @@ def _ensure_env_methods_are_ported_to_builders(pkgs, error_cls):
errors = []
for pkg_name in pkgs:
pkg_cls = spack.repo.PATH.get_pkg_class(pkg_name)
buildsystem_variant, _ = pkg_cls.variants["build_system"]
buildsystem_names = [getattr(x, "value", x) for x in buildsystem_variant.values]
builder_cls_names = [spack.builder.BUILDER_CLS[x].__name__ for x in buildsystem_names]
# values are either Value objects (for conditional values) or the values themselves
build_system_names = set(
v.value if isinstance(v, spack.variant.Value) else v
for _, variant in pkg_cls.variant_definitions("build_system")
for v in variant.values
)
builder_cls_names = [spack.builder.BUILDER_CLS[x].__name__ for x in build_system_names]
module = pkg_cls.module
has_builders_in_package_py = any(
getattr(module, name, False) for name in builder_cls_names
@@ -713,6 +689,88 @@ def _ensure_env_methods_are_ported_to_builders(pkgs, error_cls):
return errors
class DeprecatedMagicGlobals(ast.NodeVisitor):
def __init__(self, magic_globals: Iterable[str]):
super().__init__()
self.magic_globals: Set[str] = set(magic_globals)
# State to track whether we're in a class function
self.depth: int = 0
self.in_function: bool = False
self.path = (ast.Module, ast.ClassDef, ast.FunctionDef)
# Defined locals in the current function (heuristically at least)
self.locals: Set[str] = set()
# List of (name, lineno) tuples for references to magic globals
self.references_to_globals: List[Tuple[str, int]] = []
def descend_in_function_def(self, node: ast.AST) -> None:
if not isinstance(node, self.path[self.depth]):
return
self.depth += 1
if self.depth == len(self.path):
self.in_function = True
super().generic_visit(node)
if self.depth == len(self.path):
self.in_function = False
self.locals.clear()
self.depth -= 1
def generic_visit(self, node: ast.AST) -> None:
# Recurse into function definitions
if self.depth < len(self.path):
return self.descend_in_function_def(node)
elif not self.in_function:
return
elif isinstance(node, ast.Global):
for name in node.names:
if name in self.magic_globals:
self.references_to_globals.append((name, node.lineno))
elif isinstance(node, ast.Assign):
# visit the rhs before lhs
super().visit(node.value)
for target in node.targets:
super().visit(target)
elif isinstance(node, ast.Name) and node.id in self.magic_globals:
if isinstance(node.ctx, ast.Load) and node.id not in self.locals:
self.references_to_globals.append((node.id, node.lineno))
elif isinstance(node.ctx, ast.Store):
self.locals.add(node.id)
else:
super().generic_visit(node)
@package_properties
def _uses_deprecated_globals(pkgs, error_cls):
"""Ensure that packages do not use deprecated globals"""
errors = []
for pkg_name in pkgs:
# some packages scheduled to be removed in v0.23 are not worth fixing.
pkg_cls = spack.repo.PATH.get_pkg_class(pkg_name)
if all(v.get("deprecated", False) for v in pkg_cls.versions.values()):
continue
file = spack.repo.PATH.filename_for_package_name(pkg_name)
tree = ast.parse(open(file).read())
visitor = DeprecatedMagicGlobals(("std_cmake_args",))
visitor.visit(tree)
if visitor.references_to_globals:
errors.append(
error_cls(
f"Package '{pkg_name}' uses deprecated globals",
[
f"{file}:{line} references '{name}'"
for name, line in visitor.references_to_globals
],
)
)
return errors
@package_https_directives
def _linting_package_file(pkgs, error_cls):
"""Check for correctness of links"""
@@ -879,20 +937,22 @@ def check_virtual_with_variants(spec, msg):
# check variants
dependency_variants = dep.spec.variants
for name, value in dependency_variants.items():
for name, variant in dependency_variants.items():
try:
v, _ = dependency_pkg_cls.variants[name]
v.validate_or_raise(value, pkg_cls=dependency_pkg_cls)
spack.variant.prevalidate_variant_value(
dependency_pkg_cls, variant, dep.spec, strict=True
)
except Exception as e:
summary = (
f"{pkg_name}: wrong variant used for dependency in 'depends_on()'"
)
error_msg = str(e)
if isinstance(e, KeyError):
error_msg = (
f"variant {str(e).strip()} does not exist in package {dep_name}"
f" in package '{dep_name}'"
)
error_msg += f" in package '{dep_name}'"
errors.append(
error_cls(summary=summary, details=[error_msg, f"in {filename}"])
@@ -904,39 +964,38 @@ def check_virtual_with_variants(spec, msg):
@package_directives
def _ensure_variant_defaults_are_parsable(pkgs, error_cls):
"""Ensures that variant defaults are present and parsable from cli"""
def check_variant(pkg_cls, variant, vname):
# bool is a subclass of int in python. Permitting a default that is an instance
# of 'int' means both foo=false and foo=0 are accepted. Other falsish values are
# not allowed, since they can't be parsed from CLI ('foo=')
default_is_parsable = isinstance(variant.default, int) or variant.default
if not default_is_parsable:
msg = f"Variant '{vname}' of package '{pkg_cls.name}' has an unparsable default value"
return [error_cls(msg, [])]
try:
vspec = variant.make_default()
except spack.variant.MultipleValuesInExclusiveVariantError:
msg = f"Can't create default value for variant '{vname}' in package '{pkg_cls.name}'"
return [error_cls(msg, [])]
try:
variant.validate_or_raise(vspec, pkg_cls.name)
except spack.variant.InvalidVariantValueError:
msg = "Default value of variant '{vname}' in package '{pkg.name}' is invalid"
question = "Is it among the allowed values?"
return [error_cls(msg, [question])]
return []
errors = []
for pkg_name in pkgs:
pkg_cls = spack.repo.PATH.get_pkg_class(pkg_name)
for variant_name, entry in pkg_cls.variants.items():
variant, _ = entry
default_is_parsable = (
# Permitting a default that is an instance on 'int' permits
# to have foo=false or foo=0. Other falsish values are
# not allowed, since they can't be parsed from cli ('foo=')
isinstance(variant.default, int)
or variant.default
)
if not default_is_parsable:
error_msg = "Variant '{}' of package '{}' has a bad default value"
errors.append(error_cls(error_msg.format(variant_name, pkg_name), []))
continue
try:
vspec = variant.make_default()
except spack.variant.MultipleValuesInExclusiveVariantError:
error_msg = "Cannot create a default value for the variant '{}' in package '{}'"
errors.append(error_cls(error_msg.format(variant_name, pkg_name), []))
continue
try:
variant.validate_or_raise(vspec, pkg_cls=pkg_cls)
except spack.variant.InvalidVariantValueError:
error_msg = (
"The default value of the variant '{}' in package '{}' failed validation"
)
question = "Is it among the allowed values?"
errors.append(error_cls(error_msg.format(variant_name, pkg_name), [question]))
for vname in pkg_cls.variant_names():
for _, variant_def in pkg_cls.variant_definitions(vname):
errors.extend(check_variant(pkg_cls, variant_def, vname))
return errors
@@ -946,11 +1005,11 @@ def _ensure_variants_have_descriptions(pkgs, error_cls):
errors = []
for pkg_name in pkgs:
pkg_cls = spack.repo.PATH.get_pkg_class(pkg_name)
for variant_name, entry in pkg_cls.variants.items():
variant, _ = entry
if not variant.description:
error_msg = "Variant '{}' in package '{}' is missing a description"
errors.append(error_cls(error_msg.format(variant_name, pkg_name), []))
for name in pkg_cls.variant_names():
for when, variant in pkg_cls.variant_definitions(name):
if not variant.description:
msg = f"Variant '{name}' in package '{pkg_name}' is missing a description"
errors.append(error_cls(msg, []))
return errors
@@ -1007,29 +1066,26 @@ def _version_constraints_are_satisfiable_by_some_version_in_repo(pkgs, error_cls
def _analyze_variants_in_directive(pkg, constraint, directive, error_cls):
variant_exceptions = (
spack.variant.InconsistentValidationError,
spack.variant.MultipleValuesInExclusiveVariantError,
spack.variant.InvalidVariantValueError,
KeyError,
)
errors = []
variant_names = pkg.variant_names()
summary = f"{pkg.name}: wrong variant in '{directive}' directive"
filename = spack.repo.PATH.filename_for_package_name(pkg.name)
for name, v in constraint.variants.items():
if name not in variant_names:
msg = f"variant {name} does not exist in {pkg.name}"
errors.append(error_cls(summary=summary, details=[msg, f"in {filename}"]))
continue
try:
variant, _ = pkg.variants[name]
variant.validate_or_raise(v, pkg_cls=pkg)
except variant_exceptions as e:
summary = pkg.name + ': wrong variant in "{0}" directive'
summary = summary.format(directive)
filename = spack.repo.PATH.filename_for_package_name(pkg.name)
error_msg = str(e).strip()
if isinstance(e, KeyError):
error_msg = "the variant {0} does not exist".format(error_msg)
err = error_cls(summary=summary, details=[error_msg, "in " + filename])
errors.append(err)
spack.variant.prevalidate_variant_value(pkg, v, constraint, strict=True)
except (
spack.variant.InconsistentValidationError,
spack.variant.MultipleValuesInExclusiveVariantError,
spack.variant.InvalidVariantValueError,
) as e:
msg = str(e).strip()
errors.append(error_cls(summary=summary, details=[msg, f"in {filename}"]))
return errors
@@ -1067,9 +1123,10 @@ def _extracts_errors(triggers, summary):
for dname in dnames
)
for vname, (variant, triggers) in pkg_cls.variants.items():
summary = f"{pkg_name}: wrong 'when=' condition for the '{vname}' variant"
errors.extend(_extracts_errors(triggers, summary))
for when, variants_by_name in pkg_cls.variants.items():
for vname, variant in variants_by_name.items():
summary = f"{pkg_name}: wrong 'when=' condition for the '{vname}' variant"
errors.extend(_extracts_errors([when], summary))
for when, providers, details in _error_items(pkg_cls.provided):
errors.extend(

View File

@@ -33,7 +33,6 @@
from llnl.util.symlink import readlink
import spack.caches
import spack.cmd
import spack.config as config
import spack.database as spack_db
import spack.error
@@ -44,9 +43,9 @@
import spack.oci.image
import spack.oci.oci
import spack.oci.opener
import spack.paths
import spack.platforms
import spack.relocate as relocate
import spack.repo
import spack.spec
import spack.stage
import spack.store
@@ -54,6 +53,7 @@
import spack.util.archive
import spack.util.crypto
import spack.util.file_cache as file_cache
import spack.util.filesystem as ssys
import spack.util.gpg
import spack.util.parallel
import spack.util.path
@@ -105,7 +105,7 @@ class BuildCacheDatabase(spack_db.Database):
record_fields = ("spec", "ref_count", "in_buildcache")
def __init__(self, root):
super().__init__(root, lock_cfg=spack_db.NO_LOCK)
super().__init__(root, lock_cfg=spack_db.NO_LOCK, layout=None)
self._write_transaction_impl = llnl.util.lang.nullcontext
self._read_transaction_impl = llnl.util.lang.nullcontext
@@ -687,7 +687,7 @@ def get_buildfile_manifest(spec):
# Non-symlinks.
for rel_path in visitor.files:
abs_path = os.path.join(root, rel_path)
m_type, m_subtype = fsys.mime_type(abs_path)
m_type, m_subtype = ssys.mime_type(abs_path)
if relocate.needs_binary_relocation(m_type, m_subtype):
# Why is this branch not part of needs_binary_relocation? :(
@@ -788,7 +788,9 @@ def sign_specfile(key: str, specfile_path: str) -> str:
return signed_specfile_path
def _read_specs_and_push_index(file_list, read_method, cache_prefix, db, temp_dir, concurrency):
def _read_specs_and_push_index(
file_list, read_method, cache_prefix, db: BuildCacheDatabase, temp_dir, concurrency
):
"""Read all the specs listed in the provided list, using thread given thread parallelism,
generate the index, and push it to the mirror.
@@ -812,7 +814,7 @@ def _read_specs_and_push_index(file_list, read_method, cache_prefix, db, temp_di
else:
continue
db.add(fetched_spec, None)
db.add(fetched_spec)
db.mark(fetched_spec, "in_buildcache", True)
# Now generate the index, compute its hash, and push the two files to
@@ -1444,7 +1446,9 @@ def _oci_push_pkg_blob(
filename = os.path.join(tmpdir, f"{spec.dag_hash()}.tar.gz")
# Create an oci.image.layer aka tarball of the package
compressed_tarfile_checksum, tarfile_checksum = spack.oci.oci.create_tarball(spec, filename)
compressed_tarfile_checksum, tarfile_checksum = _do_create_tarball(
filename, spec.prefix, get_buildinfo_dict(spec)
)
blob = spack.oci.oci.Blob(
Digest.from_sha256(compressed_tarfile_checksum),
@@ -1765,7 +1769,7 @@ def _oci_update_index(
for spec_dict in spec_dicts:
spec = Spec.from_dict(spec_dict)
db.add(spec, directory_layout=None)
db.add(spec)
db.mark(spec, "in_buildcache", True)
# Create the index.json file
@@ -2562,7 +2566,7 @@ def install_root_node(spec, unsigned=False, force=False, sha256=None):
tty.msg('Installing "{0}" from a buildcache'.format(spec.format()))
extract_tarball(spec, download_result, force)
spack.hooks.post_install(spec, False)
spack.store.STORE.db.add(spec, spack.store.STORE.layout)
spack.store.STORE.db.add(spec)
def install_single_spec(spec, unsigned=False, force=False):
@@ -2694,6 +2698,9 @@ def get_keys(install=False, trust=False, force=False, mirrors=None):
for mirror in mirror_collection.values():
fetch_url = mirror.fetch_url
# TODO: oci:// does not support signing.
if fetch_url.startswith("oci://"):
continue
keys_url = url_util.join(
fetch_url, BUILD_CACHE_RELATIVE_PATH, BUILD_CACHE_KEYS_RELATIVE_PATH
)

View File

@@ -9,6 +9,7 @@
all_core_root_specs,
ensure_clingo_importable_or_raise,
ensure_core_dependencies,
ensure_file_in_path_or_raise,
ensure_gpg_in_path_or_raise,
ensure_patchelf_in_path_or_raise,
)
@@ -19,6 +20,7 @@
"is_bootstrapping",
"ensure_bootstrap_configuration",
"ensure_core_dependencies",
"ensure_file_in_path_or_raise",
"ensure_gpg_in_path_or_raise",
"ensure_clingo_importable_or_raise",
"ensure_patchelf_in_path_or_raise",

View File

@@ -14,6 +14,7 @@
import spack.compilers
import spack.config
import spack.environment
import spack.modules
import spack.paths
import spack.platforms
import spack.repo

View File

@@ -37,21 +37,16 @@
import spack.binary_distribution
import spack.config
import spack.detection
import spack.environment
import spack.modules
import spack.paths
import spack.platforms
import spack.platforms.linux
import spack.repo
import spack.spec
import spack.store
import spack.user_environment
import spack.util.environment
import spack.util.executable
import spack.util.path
import spack.util.spack_yaml
import spack.util.url
import spack.version
from spack.installer import PackageInstaller
from ._common import _executables_in_store, _python_import, _root_spec, _try_import_from_store
from .clingo import ClingoBootstrapConcretizer
@@ -283,7 +278,7 @@ def try_import(self, module: str, abstract_spec_str: str) -> bool:
# Install the spec that should make the module importable
with spack.config.override(self.mirror_scope):
concrete_spec.package.do_install(fail_fast=True)
PackageInstaller([concrete_spec.package], fail_fast=True).install()
if _try_import_from_store(module, query_spec=concrete_spec, query_info=info):
self.last_search = info
@@ -306,7 +301,7 @@ def try_search_path(self, executables: Tuple[str], abstract_spec_str: str) -> bo
msg = "[BOOTSTRAP] Try installing '{0}' from sources"
tty.debug(msg.format(abstract_spec_str))
with spack.config.override(self.mirror_scope):
concrete_spec.package.do_install()
PackageInstaller([concrete_spec.package], fail_fast=True).install()
if _executables_in_store(executables, concrete_spec, query_info=info):
self.last_search = info
return True
@@ -472,7 +467,8 @@ def ensure_clingo_importable_or_raise() -> None:
def gnupg_root_spec() -> str:
"""Return the root spec used to bootstrap GnuPG"""
return _root_spec("gnupg@2.3:")
root_spec_name = "win-gpg" if IS_WINDOWS else "gnupg"
return _root_spec(f"{root_spec_name}@2.3:")
def ensure_gpg_in_path_or_raise() -> None:
@@ -482,6 +478,19 @@ def ensure_gpg_in_path_or_raise() -> None:
)
def file_root_spec() -> str:
"""Return the root spec used to bootstrap file"""
root_spec_name = "win-file" if IS_WINDOWS else "file"
return _root_spec(root_spec_name)
def ensure_file_in_path_or_raise() -> None:
"""Ensure file is in the PATH or raise"""
return ensure_executables_in_path_or_raise(
executables=["file"], abstract_spec=file_root_spec()
)
def patchelf_root_spec() -> str:
"""Return the root spec used to bootstrap patchelf"""
# 0.13.1 is the last version not to require C++17.
@@ -565,14 +574,15 @@ def ensure_core_dependencies() -> None:
"""Ensure the presence of all the core dependencies."""
if sys.platform.lower() == "linux":
ensure_patchelf_in_path_or_raise()
if not IS_WINDOWS:
ensure_gpg_in_path_or_raise()
elif sys.platform == "win32":
ensure_file_in_path_or_raise()
ensure_gpg_in_path_or_raise()
ensure_clingo_importable_or_raise()
def all_core_root_specs() -> List[str]:
"""Return a list of all the core root specs that may be used to bootstrap Spack"""
return [clingo_root_spec(), gnupg_root_spec(), patchelf_root_spec()]
return [clingo_root_spec(), gnupg_root_spec(), patchelf_root_spec(), file_root_spec()]
def bootstrapping_sources(scope: Optional[str] = None):

View File

@@ -14,9 +14,9 @@
from llnl.util import tty
import spack.environment
import spack.spec
import spack.tengine
import spack.util.cpus
import spack.util.executable
import spack.util.path
from ._common import _root_spec
from .config import root_path, spec_for_current_python, store_path

View File

@@ -88,7 +88,7 @@ def _core_requirements() -> List[RequiredResponseType]:
def _buildcache_requirements() -> List[RequiredResponseType]:
_buildcache_exes = {
"file": _missing("file", "required to analyze files for buildcaches"),
"file": _missing("file", "required to analyze files for buildcaches", system_only=False),
("gpg2", "gpg"): _missing("gpg2", "required to sign/verify buildcaches", False),
}
if platform.system().lower() == "darwin":

View File

@@ -53,6 +53,7 @@
from llnl.util.tty.color import cescape, colorize
from llnl.util.tty.log import MultiProcessFd
import spack.build_systems._checks
import spack.build_systems.cmake
import spack.build_systems.meson
import spack.build_systems.python
@@ -61,26 +62,20 @@
import spack.config
import spack.deptypes as dt
import spack.error
import spack.main
import spack.multimethod
import spack.package_base
import spack.paths
import spack.platforms
import spack.repo
import spack.schema.environment
import spack.spec
import spack.stage
import spack.store
import spack.subprocess_context
import spack.user_environment
import spack.util.executable
import spack.util.path
import spack.util.pattern
from spack import traverse
from spack.context import Context
from spack.error import NoHeadersError, NoLibrariesError
from spack.error import InstallError, NoHeadersError, NoLibrariesError
from spack.install_test import spack_install_test_log
from spack.installer import InstallError
from spack.util.cpus import determine_number_of_jobs
from spack.util.environment import (
SYSTEM_DIR_CASE_ENTRY,
EnvironmentModifications,
@@ -455,7 +450,7 @@ def set_wrapper_variables(pkg, env):
env.set(SPACK_DEBUG, "TRUE")
env.set(SPACK_SHORT_SPEC, pkg.spec.short_spec)
env.set(SPACK_DEBUG_LOG_ID, pkg.spec.format("{name}-{hash:7}"))
env.set(SPACK_DEBUG_LOG_DIR, spack.main.spack_working_dir)
env.set(SPACK_DEBUG_LOG_DIR, spack.paths.spack_working_dir)
if spack.config.get("config:ccache"):
# Enable ccache in the compiler wrapper
@@ -562,7 +557,7 @@ def set_package_py_globals(pkg, context: Context = Context.BUILD):
module.std_meson_args = spack.build_systems.meson.MesonBuilder.std_args(pkg)
module.std_pip_args = spack.build_systems.python.PythonPipBuilder.std_args(pkg)
jobs = determine_number_of_jobs(parallel=pkg.parallel)
jobs = spack.config.determine_number_of_jobs(parallel=pkg.parallel)
module.make_jobs = jobs
# TODO: make these build deps that can be installed if not found.
@@ -1139,7 +1134,7 @@ def _setup_pkg_and_run(
return_value = function(pkg, kwargs)
write_pipe.send(return_value)
except StopPhase as e:
except spack.error.StopPhase as e:
# Do not create a full ChildError from this, it's not an error
# it's a control statement.
write_pipe.send(e)
@@ -1300,7 +1295,7 @@ def exitcode_msg(p):
p.join()
# If returns a StopPhase, raise it
if isinstance(child_result, StopPhase):
if isinstance(child_result, spack.error.StopPhase):
# do not print
raise child_result
@@ -1509,17 +1504,6 @@ def _make_child_error(msg, module, name, traceback, log, log_type, context):
return ChildError(msg, module, name, traceback, log, log_type, context)
class StopPhase(spack.error.SpackError):
"""Pickle-able exception to control stopped builds."""
def __reduce__(self):
return _make_stop_phase, (self.message, self.long_message)
def _make_stop_phase(msg, long_msg):
return StopPhase(msg, long_msg)
def write_log_summary(out, log_type, log, last=None):
errors, warnings = parse_log_events(log)
nerr = len(errors)
@@ -1553,21 +1537,21 @@ class ModuleChangePropagator:
_PROTECTED_NAMES = ("package", "current_module", "modules_in_mro", "_set_attributes")
def __init__(self, package):
def __init__(self, package: spack.package_base.PackageBase) -> None:
self._set_self_attributes("package", package)
self._set_self_attributes("current_module", package.module)
#: Modules for the classes in the MRO up to PackageBase
modules_in_mro = []
for cls in type(package).__mro__:
module = cls.module
for cls in package.__class__.__mro__:
module = getattr(cls, "module", None)
if module == self.current_module:
continue
if module == spack.package_base:
if module is None or module is spack.package_base:
break
if module is self.current_module:
continue
modules_in_mro.append(module)
self._set_self_attributes("modules_in_mro", modules_in_mro)
self._set_self_attributes("_set_attributes", {})

View File

@@ -8,7 +8,7 @@
import llnl.util.lang
import spack.builder
import spack.installer
import spack.error
import spack.relocate
import spack.spec
import spack.store
@@ -34,7 +34,7 @@ def check_paths(path_list, filetype, predicate):
if not predicate(abs_path):
msg = "Install failed for {0}. No such {1} in prefix: {2}"
msg = msg.format(pkg.name, filetype, path)
raise spack.installer.InstallError(msg)
raise spack.error.InstallError(msg)
check_paths(pkg.sanity_check_is_file, "file", os.path.isfile)
check_paths(pkg.sanity_check_is_dir, "directory", os.path.isdir)
@@ -42,7 +42,7 @@ def check_paths(path_list, filetype, predicate):
ignore_file = llnl.util.lang.match_predicate(spack.store.STORE.layout.hidden_file_regexes)
if all(map(ignore_file, os.listdir(pkg.prefix))):
msg = "Install failed for {0}. Nothing was installed!"
raise spack.installer.InstallError(msg.format(pkg.name))
raise spack.error.InstallError(msg.format(pkg.name))
def apply_macos_rpath_fixups(builder: spack.builder.Builder):

View File

@@ -2,7 +2,6 @@
# Spack Project Developers. See the top-level COPYRIGHT file for details.
#
# SPDX-License-Identifier: (Apache-2.0 OR MIT)
import inspect
import os
import os.path
import stat
@@ -14,6 +13,7 @@
import spack.build_environment
import spack.builder
import spack.error
import spack.package_base
from spack.directives import build_system, conflicts, depends_on
from spack.multimethod import when
@@ -249,7 +249,7 @@ def runs_ok(script_abs_path):
# An external gnuconfig may not not have a prefix.
if gnuconfig_dir is None:
raise spack.build_environment.InstallError(
raise spack.error.InstallError(
"Spack could not find substitutes for GNU config files because no "
"prefix is available for the `gnuconfig` package. Make sure you set a "
"prefix path instead of modules for external `gnuconfig`."
@@ -269,7 +269,7 @@ def runs_ok(script_abs_path):
msg += (
" or the `gnuconfig` package prefix is misconfigured as" " an external package"
)
raise spack.build_environment.InstallError(msg)
raise spack.error.InstallError(msg)
# Filter working substitutes
candidates = [f for f in candidates if runs_ok(f)]
@@ -294,9 +294,7 @@ def runs_ok(script_abs_path):
and set the prefix to the directory containing the `config.guess` and
`config.sub` files.
"""
raise spack.build_environment.InstallError(
msg.format(", ".join(to_be_found), self.name)
)
raise spack.error.InstallError(msg.format(", ".join(to_be_found), self.name))
# Copy the good files over the bad ones
for abs_path in to_be_patched:
@@ -549,13 +547,12 @@ def autoreconf(self, pkg, spec, prefix):
tty.warn("* a custom AUTORECONF phase in the package *")
tty.warn("*********************************************************")
with fs.working_dir(self.configure_directory):
m = inspect.getmodule(self.pkg)
# This line is what is needed most of the time
# --install, --verbose, --force
autoreconf_args = ["-ivf"]
autoreconf_args += self.autoreconf_search_path_args
autoreconf_args += self.autoreconf_extra_args
m.autoreconf(*autoreconf_args)
self.pkg.module.autoreconf(*autoreconf_args)
@property
def autoreconf_search_path_args(self):
@@ -579,7 +576,9 @@ def set_configure_or_die(self):
raise RuntimeError(msg.format(self.configure_directory))
# Monkey-patch the configure script in the corresponding module
inspect.getmodule(self.pkg).configure = Executable(self.configure_abs_path)
globals_for_pkg = spack.build_environment.ModuleChangePropagator(self.pkg)
globals_for_pkg.configure = Executable(self.configure_abs_path)
globals_for_pkg.propagate_changes_to_mro()
def configure_args(self):
"""Return the list of all the arguments that must be passed to configure,
@@ -596,7 +595,7 @@ def configure(self, pkg, spec, prefix):
options += self.configure_args()
with fs.working_dir(self.build_directory, create=True):
inspect.getmodule(self.pkg).configure(*options)
pkg.module.configure(*options)
def build(self, pkg, spec, prefix):
"""Run "make" on the build targets specified by the builder."""
@@ -604,12 +603,12 @@ def build(self, pkg, spec, prefix):
params = ["V=1"]
params += self.build_targets
with fs.working_dir(self.build_directory):
inspect.getmodule(self.pkg).make(*params)
pkg.module.make(*params)
def install(self, pkg, spec, prefix):
"""Run "make" on the install targets specified by the builder."""
with fs.working_dir(self.build_directory):
inspect.getmodule(self.pkg).make(*self.install_targets)
pkg.module.make(*self.install_targets)
spack.builder.run_after("build")(execute_build_time_tests)
@@ -688,9 +687,8 @@ def _activate_or_not(
variant = variant or name
# Defensively look that the name passed as argument is among
# variants
if variant not in self.pkg.variants:
# Defensively look that the name passed as argument is among variants
if not self.pkg.has_variant(variant):
msg = '"{0}" is not a variant of "{1}"'
raise KeyError(msg.format(variant, self.pkg.name))
@@ -699,27 +697,19 @@ def _activate_or_not(
# Create a list of pairs. Each pair includes a configuration
# option and whether or not that option is activated
variant_desc, _ = self.pkg.variants[variant]
if set(variant_desc.values) == set((True, False)):
vdef = self.pkg.get_variant(variant)
if set(vdef.values) == set((True, False)):
# BoolValuedVariant carry information about a single option.
# Nonetheless, for uniformity of treatment we'll package them
# in an iterable of one element.
condition = "+{name}".format(name=variant)
options = [(name, condition in spec)]
options = [(name, f"+{variant}" in spec)]
else:
condition = "{variant}={value}"
# "feature_values" is used to track values which correspond to
# features which can be enabled or disabled as understood by the
# package's build system. It excludes values which have special
# meanings and do not correspond to features (e.g. "none")
feature_values = (
getattr(variant_desc.values, "feature_values", None) or variant_desc.values
)
options = [
(value, condition.format(variant=variant, value=value) in spec)
for value in feature_values
]
feature_values = getattr(vdef.values, "feature_values", None) or vdef.values
options = [(value, f"{variant}={value}" in spec) for value in feature_values]
# For each allowed value in the list of values
for option_value, activated in options:

View File

@@ -89,7 +89,7 @@ def define_cmake_cache_from_variant(self, cmake_var, variant=None, comment=""):
if variant is None:
variant = cmake_var.lower()
if variant not in self.pkg.variants:
if not self.pkg.has_variant(variant):
raise KeyError('"{0}" is not a variant of "{1}"'.format(variant, self.pkg.name))
if variant not in self.pkg.spec.variants:

View File

@@ -3,8 +3,6 @@
#
# SPDX-License-Identifier: (Apache-2.0 OR MIT)
import inspect
import llnl.util.filesystem as fs
import spack.builder
@@ -72,9 +70,7 @@ def check_args(self):
def build(self, pkg, spec, prefix):
"""Runs ``cargo install`` in the source directory"""
with fs.working_dir(self.build_directory):
inspect.getmodule(pkg).cargo(
"install", "--root", "out", "--path", ".", *self.build_args
)
pkg.module.cargo("install", "--root", "out", "--path", ".", *self.build_args)
def install(self, pkg, spec, prefix):
"""Copy build files into package prefix."""
@@ -86,4 +82,4 @@ def install(self, pkg, spec, prefix):
def check(self):
"""Run "cargo test"."""
with fs.working_dir(self.build_directory):
inspect.getmodule(self.pkg).cargo("test", *self.check_args)
self.pkg.module.cargo("test", *self.check_args)

View File

@@ -3,7 +3,6 @@
#
# SPDX-License-Identifier: (Apache-2.0 OR MIT)
import collections.abc
import inspect
import os
import pathlib
import platform
@@ -16,6 +15,7 @@
import spack.build_environment
import spack.builder
import spack.deptypes as dt
import spack.error
import spack.package_base
from spack.directives import build_system, conflicts, depends_on, variant
from spack.multimethod import when
@@ -146,6 +146,7 @@ def _values(x):
default=default,
values=_values,
description="the build system generator to use",
when="build_system=cmake",
)
for x in not_used:
conflicts(f"generator={x}")
@@ -345,7 +346,7 @@ def std_args(pkg, generator=None):
msg = "Invalid CMake generator: '{0}'\n".format(generator)
msg += "CMakePackage currently supports the following "
msg += "primary generators: '{0}'".format("', '".join(valid_primary_generators))
raise spack.package_base.InstallError(msg)
raise spack.error.InstallError(msg)
try:
build_type = pkg.spec.variants["build_type"].value
@@ -505,7 +506,7 @@ def define_from_variant(self, cmake_var, variant=None):
if variant is None:
variant = cmake_var.lower()
if variant not in self.pkg.variants:
if not self.pkg.has_variant(variant):
raise KeyError('"{0}" is not a variant of "{1}"'.format(variant, self.pkg.name))
if variant not in self.pkg.spec.variants:
@@ -544,24 +545,24 @@ def cmake(self, pkg, spec, prefix):
options += self.cmake_args()
options.append(os.path.abspath(self.root_cmakelists_dir))
with fs.working_dir(self.build_directory, create=True):
inspect.getmodule(self.pkg).cmake(*options)
pkg.module.cmake(*options)
def build(self, pkg, spec, prefix):
"""Make the build targets"""
with fs.working_dir(self.build_directory):
if self.generator == "Unix Makefiles":
inspect.getmodule(self.pkg).make(*self.build_targets)
pkg.module.make(*self.build_targets)
elif self.generator == "Ninja":
self.build_targets.append("-v")
inspect.getmodule(self.pkg).ninja(*self.build_targets)
pkg.module.ninja(*self.build_targets)
def install(self, pkg, spec, prefix):
"""Make the install targets"""
with fs.working_dir(self.build_directory):
if self.generator == "Unix Makefiles":
inspect.getmodule(self.pkg).make(*self.install_targets)
pkg.module.make(*self.install_targets)
elif self.generator == "Ninja":
inspect.getmodule(self.pkg).ninja(*self.install_targets)
pkg.module.ninja(*self.install_targets)
spack.builder.run_after("build")(execute_build_time_tests)

View File

@@ -14,6 +14,7 @@
import spack.compiler
import spack.package_base
import spack.util.executable
# Local "type" for type hints
Path = Union[str, pathlib.Path]

View File

@@ -3,6 +3,9 @@
#
# SPDX-License-Identifier: (Apache-2.0 OR MIT)
import re
from typing import Iterable, List
import spack.variant
from spack.directives import conflicts, depends_on, variant
from spack.multimethod import when
@@ -44,6 +47,7 @@ class CudaPackage(PackageBase):
"87",
"89",
"90",
"90a",
)
# FIXME: keep cuda and cuda_arch separate to make usage easier until
@@ -70,6 +74,27 @@ def cuda_flags(arch_list):
for s in arch_list
]
@staticmethod
def compute_capabilities(arch_list: Iterable[str]) -> List[str]:
"""Adds a decimal place to each CUDA arch.
>>> compute_capabilities(['90', '90a'])
['9.0', '9.0a']
Args:
arch_list: A list of integer strings, optionally followed by a suffix.
Returns:
A list of float strings, optionally followed by a suffix
"""
pattern = re.compile(r"(\d+)")
capabilities = []
for arch in arch_list:
_, number, letter = re.split(pattern, arch)
number = "{0:.1f}".format(float(number) / 10.0)
capabilities.append(number + letter)
return capabilities
depends_on("cuda", when="+cuda")
# CUDA version vs Architecture
@@ -145,7 +170,8 @@ def cuda_flags(arch_list):
conflicts("%clang@15:", when="+cuda ^cuda@:12.0")
conflicts("%clang@16:", when="+cuda ^cuda@:12.1")
conflicts("%clang@17:", when="+cuda ^cuda@:12.3")
conflicts("%clang@18:", when="+cuda ^cuda@:12.6")
conflicts("%clang@18:", when="+cuda ^cuda@:12.5")
conflicts("%clang@19:", when="+cuda ^cuda@:12.6")
# https://gist.github.com/ax3l/9489132#gistcomment-3860114
conflicts("%gcc@10", when="+cuda ^cuda@:11.4.0")

View File

@@ -3,8 +3,6 @@
#
# SPDX-License-Identifier: (Apache-2.0 OR MIT)
import inspect
import llnl.util.filesystem as fs
import spack.builder
@@ -82,7 +80,7 @@ def check_args(self):
def build(self, pkg, spec, prefix):
"""Runs ``go build`` in the source directory"""
with fs.working_dir(self.build_directory):
inspect.getmodule(pkg).go("build", *self.build_args)
pkg.module.go("build", *self.build_args)
def install(self, pkg, spec, prefix):
"""Install built binaries into prefix bin."""
@@ -95,4 +93,4 @@ def install(self, pkg, spec, prefix):
def check(self):
"""Run ``go test .`` in the source directory"""
with fs.working_dir(self.build_directory):
inspect.getmodule(self.pkg).go("test", *self.check_args)
self.pkg.module.go("test", *self.check_args)

View File

@@ -22,9 +22,10 @@
install,
)
import spack.builder
import spack.error
from spack.build_environment import dso_suffix
from spack.package_base import InstallError
from spack.error import InstallError
from spack.util.environment import EnvironmentModifications
from spack.util.executable import Executable
from spack.util.prefix import Prefix

View File

@@ -2,7 +2,6 @@
# Spack Project Developers. See the top-level COPYRIGHT file for details.
#
# SPDX-License-Identifier: (Apache-2.0 OR MIT)
import inspect
from typing import List
import llnl.util.filesystem as fs
@@ -103,12 +102,12 @@ def edit(self, pkg, spec, prefix):
def build(self, pkg, spec, prefix):
"""Run "make" on the build targets specified by the builder."""
with fs.working_dir(self.build_directory):
inspect.getmodule(self.pkg).make(*self.build_targets)
pkg.module.make(*self.build_targets)
def install(self, pkg, spec, prefix):
"""Run "make" on the install targets specified by the builder."""
with fs.working_dir(self.build_directory):
inspect.getmodule(self.pkg).make(*self.install_targets)
pkg.module.make(*self.install_targets)
spack.builder.run_after("build")(execute_build_time_tests)

View File

@@ -2,7 +2,6 @@
# Spack Project Developers. See the top-level COPYRIGHT file for details.
#
# SPDX-License-Identifier: (Apache-2.0 OR MIT)
import inspect
import os
from typing import List
@@ -195,19 +194,19 @@ def meson(self, pkg, spec, prefix):
options += self.std_meson_args
options += self.meson_args()
with fs.working_dir(self.build_directory, create=True):
inspect.getmodule(self.pkg).meson(*options)
pkg.module.meson(*options)
def build(self, pkg, spec, prefix):
"""Make the build targets"""
options = ["-v"]
options += self.build_targets
with fs.working_dir(self.build_directory):
inspect.getmodule(self.pkg).ninja(*options)
pkg.module.ninja(*options)
def install(self, pkg, spec, prefix):
"""Make the install targets"""
with fs.working_dir(self.build_directory):
inspect.getmodule(self.pkg).ninja(*self.install_targets)
pkg.module.ninja(*self.install_targets)
spack.builder.run_after("build")(execute_build_time_tests)

View File

@@ -2,7 +2,6 @@
# Spack Project Developers. See the top-level COPYRIGHT file for details.
#
# SPDX-License-Identifier: (Apache-2.0 OR MIT)
import inspect
from typing import List # novm
import llnl.util.filesystem as fs
@@ -104,7 +103,7 @@ def msbuild_install_args(self):
def build(self, pkg, spec, prefix):
"""Run "msbuild" on the build targets specified by the builder."""
with fs.working_dir(self.build_directory):
inspect.getmodule(self.pkg).msbuild(
pkg.module.msbuild(
*self.std_msbuild_args,
*self.msbuild_args(),
self.define_targets(*self.build_targets),
@@ -114,6 +113,6 @@ def install(self, pkg, spec, prefix):
"""Run "msbuild" on the install targets specified by the builder.
This is INSTALL by default"""
with fs.working_dir(self.build_directory):
inspect.getmodule(self.pkg).msbuild(
pkg.module.msbuild(
*self.msbuild_install_args(), self.define_targets(*self.install_targets)
)

View File

@@ -2,7 +2,6 @@
# Spack Project Developers. See the top-level COPYRIGHT file for details.
#
# SPDX-License-Identifier: (Apache-2.0 OR MIT)
import inspect
from typing import List # novm
import llnl.util.filesystem as fs
@@ -132,9 +131,7 @@ def build(self, pkg, spec, prefix):
if self.makefile_name:
opts.append("/F{}".format(self.makefile_name))
with fs.working_dir(self.build_directory):
inspect.getmodule(self.pkg).nmake(
*opts, *self.build_targets, ignore_quotes=self.ignore_quotes
)
pkg.module.nmake(*opts, *self.build_targets, ignore_quotes=self.ignore_quotes)
def install(self, pkg, spec, prefix):
"""Run "nmake" on the install targets specified by the builder.
@@ -146,6 +143,4 @@ def install(self, pkg, spec, prefix):
opts.append("/F{}".format(self.makefile_name))
opts.append(self.define("PREFIX", fs.windows_sfn(prefix)))
with fs.working_dir(self.build_directory):
inspect.getmodule(self.pkg).nmake(
*opts, *self.install_targets, ignore_quotes=self.ignore_quotes
)
pkg.module.nmake(*opts, *self.install_targets, ignore_quotes=self.ignore_quotes)

View File

@@ -2,8 +2,6 @@
# Spack Project Developers. See the top-level COPYRIGHT file for details.
#
# SPDX-License-Identifier: (Apache-2.0 OR MIT)
import inspect
import spack.builder
import spack.package_base
from spack.directives import build_system, extends
@@ -47,7 +45,7 @@ class OctaveBuilder(BaseBuilder):
def install(self, pkg, spec, prefix):
"""Install the package from the archive file"""
inspect.getmodule(self.pkg).octave(
pkg.module.octave(
"--quiet",
"--norc",
"--built-in-docstrings-file=/dev/null",

View File

@@ -15,7 +15,7 @@
import spack.util.path
from spack.build_environment import dso_suffix
from spack.directives import conflicts, license, redistribute, variant
from spack.package_base import InstallError
from spack.error import InstallError
from spack.util.environment import EnvironmentModifications
from spack.util.executable import Executable

View File

@@ -2,7 +2,6 @@
# Spack Project Developers. See the top-level COPYRIGHT file for details.
#
# SPDX-License-Identifier: (Apache-2.0 OR MIT)
import inspect
import os
from typing import Iterable
@@ -134,7 +133,7 @@ def build_method(self):
def build_executable(self):
"""Returns the executable method to build the perl package"""
if self.build_method == "Makefile.PL":
build_executable = inspect.getmodule(self.pkg).make
build_executable = self.pkg.module.make
elif self.build_method == "Build.PL":
build_executable = Executable(os.path.join(self.pkg.stage.source_path, "Build"))
return build_executable
@@ -158,7 +157,7 @@ def configure(self, pkg, spec, prefix):
options = ["Build.PL", "--install_base", prefix]
options += self.configure_args()
inspect.getmodule(self.pkg).perl(*options)
pkg.module.perl(*options)
# It is possible that the shebang in the Build script that is created from
# Build.PL may be too long causing the build to fail. Patching the shebang

View File

@@ -4,7 +4,6 @@
# SPDX-License-Identifier: (Apache-2.0 OR MIT)
import functools
import inspect
import operator
import os
import re
@@ -25,6 +24,8 @@
import spack.detection
import spack.multimethod
import spack.package_base
import spack.platforms
import spack.repo
import spack.spec
import spack.store
from spack.directives import build_system, depends_on, extends
@@ -228,7 +229,7 @@ def test_imports(self) -> None:
# Make sure we are importing the installed modules,
# not the ones in the source directory
python = inspect.getmodule(self).python # type: ignore[union-attr]
python = self.module.python
for module in self.import_modules:
with test_part(
self,
@@ -315,9 +316,9 @@ def get_external_python_for_prefix(self):
)
python_externals_detected = [
d.spec
for d in python_externals_detection.get("python", [])
if d.prefix == self.spec.external_path
spec
for spec in python_externals_detection.get("python", [])
if spec.external_path == self.spec.external_path
]
if python_externals_detected:
return python_externals_detected[0]

View File

@@ -2,8 +2,6 @@
# Spack Project Developers. See the top-level COPYRIGHT file for details.
#
# SPDX-License-Identifier: (Apache-2.0 OR MIT)
import inspect
from llnl.util.filesystem import working_dir
import spack.builder
@@ -66,17 +64,17 @@ def qmake_args(self):
def qmake(self, pkg, spec, prefix):
"""Run ``qmake`` to configure the project and generate a Makefile."""
with working_dir(self.build_directory):
inspect.getmodule(self.pkg).qmake(*self.qmake_args())
pkg.module.qmake(*self.qmake_args())
def build(self, pkg, spec, prefix):
"""Make the build targets"""
with working_dir(self.build_directory):
inspect.getmodule(self.pkg).make()
pkg.module.make()
def install(self, pkg, spec, prefix):
"""Make the install targets"""
with working_dir(self.build_directory):
inspect.getmodule(self.pkg).make("install")
pkg.module.make("install")
def check(self):
"""Search the Makefile for a ``check:`` target and runs it if found."""

View File

@@ -2,10 +2,10 @@
# Spack Project Developers. See the top-level COPYRIGHT file for details.
#
# SPDX-License-Identifier: (Apache-2.0 OR MIT)
import inspect
from typing import Optional, Tuple
import llnl.util.lang as lang
from llnl.util.filesystem import mkdirp
from spack.directives import extends
@@ -37,6 +37,7 @@ def configure_vars(self):
def install(self, pkg, spec, prefix):
"""Installs an R package."""
mkdirp(pkg.module.r_lib_dir)
config_args = self.configure_args()
config_vars = self.configure_vars()
@@ -44,14 +45,14 @@ def install(self, pkg, spec, prefix):
args = ["--vanilla", "CMD", "INSTALL"]
if config_args:
args.append("--configure-args={0}".format(" ".join(config_args)))
args.append(f"--configure-args={' '.join(config_args)}")
if config_vars:
args.append("--configure-vars={0}".format(" ".join(config_vars)))
args.append(f"--configure-vars={' '.join(config_vars)}")
args.extend(["--library={0}".format(self.pkg.module.r_lib_dir), self.stage.source_path])
args.extend([f"--library={pkg.module.r_lib_dir}", self.stage.source_path])
inspect.getmodule(self.pkg).R(*args)
pkg.module.R(*args)
class RPackage(Package):
@@ -80,27 +81,21 @@ class RPackage(Package):
@lang.classproperty
def homepage(cls):
if cls.cran:
return "https://cloud.r-project.org/package=" + cls.cran
return f"https://cloud.r-project.org/package={cls.cran}"
elif cls.bioc:
return "https://bioconductor.org/packages/" + cls.bioc
return f"https://bioconductor.org/packages/{cls.bioc}"
@lang.classproperty
def url(cls):
if cls.cran:
return (
"https://cloud.r-project.org/src/contrib/"
+ cls.cran
+ "_"
+ str(list(cls.versions)[0])
+ ".tar.gz"
)
return f"https://cloud.r-project.org/src/contrib/{cls.cran}_{str(list(cls.versions)[0])}.tar.gz"
@lang.classproperty
def list_url(cls):
if cls.cran:
return "https://cloud.r-project.org/src/contrib/Archive/" + cls.cran + "/"
return f"https://cloud.r-project.org/src/contrib/Archive/{cls.cran}/"
@property
def git(self):
if self.bioc:
return "https://git.bioconductor.org/packages/" + self.bioc
return f"https://git.bioconductor.org/packages/{self.bioc}"

View File

@@ -11,9 +11,9 @@
import spack.builder
from spack.build_environment import SPACK_NO_PARALLEL_MAKE
from spack.config import determine_number_of_jobs
from spack.directives import build_system, extends, maintainers
from spack.package_base import PackageBase
from spack.util.cpus import determine_number_of_jobs
from spack.util.environment import env_flag
from spack.util.executable import Executable, ProcessError

View File

@@ -3,7 +3,6 @@
#
# SPDX-License-Identifier: (Apache-2.0 OR MIT)
import glob
import inspect
import spack.builder
import spack.package_base
@@ -52,10 +51,10 @@ def build(self, pkg, spec, prefix):
gemspecs = glob.glob("*.gemspec")
rakefiles = glob.glob("Rakefile")
if gemspecs:
inspect.getmodule(self.pkg).gem("build", "--norc", gemspecs[0])
pkg.module.gem("build", "--norc", gemspecs[0])
elif rakefiles:
jobs = inspect.getmodule(self.pkg).make_jobs
inspect.getmodule(self.pkg).rake("package", "-j{0}".format(jobs))
jobs = pkg.module.make_jobs
pkg.module.rake("package", "-j{0}".format(jobs))
else:
# Some Ruby packages only ship `*.gem` files, so nothing to build
pass
@@ -70,6 +69,6 @@ def install(self, pkg, spec, prefix):
# if --install-dir is not used, GEM_PATH is deleted from the
# environement, and Gems required to build native extensions will
# not be found. Those extensions are built during `gem install`.
inspect.getmodule(self.pkg).gem(
pkg.module.gem(
"install", "--norc", "--ignore-dependencies", "--install-dir", prefix, gems[0]
)

View File

@@ -2,8 +2,6 @@
# Spack Project Developers. See the top-level COPYRIGHT file for details.
#
# SPDX-License-Identifier: (Apache-2.0 OR MIT)
import inspect
import spack.builder
import spack.package_base
from spack.directives import build_system, depends_on
@@ -63,8 +61,7 @@ def build_args(self, spec, prefix):
def build(self, pkg, spec, prefix):
"""Build the package."""
args = self.build_args(spec, prefix)
inspect.getmodule(self.pkg).scons(*args)
pkg.module.scons(*self.build_args(spec, prefix))
def install_args(self, spec, prefix):
"""Arguments to pass to install."""
@@ -72,9 +69,7 @@ def install_args(self, spec, prefix):
def install(self, pkg, spec, prefix):
"""Install the package."""
args = self.install_args(spec, prefix)
inspect.getmodule(self.pkg).scons("install", *args)
pkg.module.scons("install", *self.install_args(spec, prefix))
def build_test(self):
"""Run unit tests after build.

View File

@@ -2,7 +2,6 @@
# Spack Project Developers. See the top-level COPYRIGHT file for details.
#
# SPDX-License-Identifier: (Apache-2.0 OR MIT)
import inspect
import os
import re
@@ -86,14 +85,13 @@ def import_modules(self):
def python(self, *args, **kwargs):
"""The python ``Executable``."""
inspect.getmodule(self).python(*args, **kwargs)
self.pkg.module.python(*args, **kwargs)
def test_imports(self):
"""Attempts to import modules of the installed package."""
# Make sure we are importing the installed modules,
# not the ones in the source directory
python = inspect.getmodule(self).python
for module in self.import_modules:
with spack.install_test.test_part(
self,
@@ -101,7 +99,7 @@ def test_imports(self):
purpose="checking import of {0}".format(module),
work_dir="spack-test",
):
python("-c", "import {0}".format(module))
self.python("-c", "import {0}".format(module))
@spack.builder.builder("sip")
@@ -136,7 +134,7 @@ def configure(self, pkg, spec, prefix):
"""Configure the package."""
# https://www.riverbankcomputing.com/static/Docs/sip/command_line_tools.html
args = ["--verbose", "--target-dir", inspect.getmodule(self.pkg).python_platlib]
args = ["--verbose", "--target-dir", pkg.module.python_platlib]
args.extend(self.configure_args())
# https://github.com/Python-SIP/sip/commit/cb0be6cb6e9b756b8b0db3136efb014f6fb9b766
@@ -155,7 +153,7 @@ def build(self, pkg, spec, prefix):
args = self.build_args()
with working_dir(self.build_directory):
inspect.getmodule(self.pkg).make(*args)
pkg.module.make(*args)
def build_args(self):
"""Arguments to pass to build."""
@@ -166,7 +164,7 @@ def install(self, pkg, spec, prefix):
args = self.install_args()
with working_dir(self.build_directory):
inspect.getmodule(self.pkg).make("install", *args)
pkg.module.make("install", *args)
def install_args(self):
"""Arguments to pass to install."""

View File

@@ -2,8 +2,6 @@
# Spack Project Developers. See the top-level COPYRIGHT file for details.
#
# SPDX-License-Identifier: (Apache-2.0 OR MIT)
import inspect
from llnl.util.filesystem import working_dir
import spack.builder
@@ -90,11 +88,11 @@ def build_directory(self):
def python(self, *args, **kwargs):
"""The python ``Executable``."""
inspect.getmodule(self.pkg).python(*args, **kwargs)
self.pkg.module.python(*args, **kwargs)
def waf(self, *args, **kwargs):
"""Runs the waf ``Executable``."""
jobs = inspect.getmodule(self.pkg).make_jobs
jobs = self.pkg.module.make_jobs
with working_dir(self.build_directory):
self.python("waf", "-j{0}".format(jobs), *args, **kwargs)

View File

@@ -6,12 +6,11 @@
import collections.abc
import copy
import functools
import inspect
from typing import List, Optional, Tuple
from llnl.util import lang
import spack.build_environment
import spack.error
import spack.multimethod
#: Builder classes, as registered by the "builder" decorator
@@ -97,11 +96,10 @@ class hierarchy (look at AspellDictPackage for an example of that)
Args:
pkg (spack.package_base.PackageBase): package object for which we need a builder
"""
package_module = inspect.getmodule(pkg)
package_buildsystem = buildsystem_name(pkg)
default_builder_cls = BUILDER_CLS[package_buildsystem]
builder_cls_name = default_builder_cls.__name__
builder_cls = getattr(package_module, builder_cls_name, None)
builder_cls = getattr(pkg.module, builder_cls_name, None)
if builder_cls:
return builder_cls(pkg)
@@ -463,15 +461,13 @@ def _on_phase_start(self, instance):
# If a phase has a matching stop_before_phase attribute,
# stop the installation process raising a StopPhase
if getattr(instance, "stop_before_phase", None) == self.name:
raise spack.build_environment.StopPhase(
"Stopping before '{0}' phase".format(self.name)
)
raise spack.error.StopPhase("Stopping before '{0}' phase".format(self.name))
def _on_phase_exit(self, instance):
# If a phase has a matching last_phase attribute,
# stop the installation process raising a StopPhase
if getattr(instance, "last_phase", None) == self.name:
raise spack.build_environment.StopPhase("Stopping at '{0}' phase".format(self.name))
raise spack.error.StopPhase("Stopping at '{0}' phase".format(self.name))
def copy(self):
return copy.deepcopy(self)

View File

@@ -11,9 +11,7 @@
from llnl.util.filesystem import mkdirp
import spack.config
import spack.error
import spack.fetch_strategy
import spack.mirror
import spack.paths
import spack.util.file_cache
import spack.util.path

View File

@@ -31,6 +31,7 @@
import spack
import spack.binary_distribution as bindist
import spack.concretize
import spack.config as cfg
import spack.environment as ev
import spack.main
@@ -38,7 +39,6 @@
import spack.paths
import spack.repo
import spack.spec
import spack.stage
import spack.util.git
import spack.util.gpg as gpg_util
import spack.util.spack_yaml as syaml
@@ -1219,8 +1219,8 @@ def main_script_replacements(cmd):
# Capture the version of Spack used to generate the pipeline, that can be
# passed to `git checkout` for version consistency. If we aren't in a Git
# repository, presume we are a Spack release and use the Git tag instead.
spack_version = spack.main.get_version()
version_to_clone = spack.main.get_spack_commit() or f"v{spack.spack_version}"
spack_version = spack.get_version()
version_to_clone = spack.get_spack_commit() or f"v{spack.spack_version}"
output_object["variables"] = {
"SPACK_ARTIFACTS_ROOT": rel_artifacts_root,

View File

@@ -17,7 +17,7 @@
from llnl.util.tty.colify import colify
from llnl.util.tty.color import colorize
import spack.config
import spack.config # breaks a cycle.
import spack.environment as ev
import spack.error
import spack.extensions

View File

@@ -11,6 +11,7 @@
import llnl.util.tty.color as color
import spack.platforms
import spack.spec
description = "print architecture information about this machine"
section = "system"

View File

@@ -115,15 +115,11 @@ def audit(parser, args):
def _process_reports(reports):
for check, errors in reports:
if errors:
msg = "{0}: {1} issue{2} found".format(
check, len(errors), "" if len(errors) == 1 else "s"
)
header = "@*b{" + msg + "}"
print(cl.colorize(header))
status = f"{len(errors)} issue{'' if len(errors) == 1 else 's'} found"
print(cl.colorize(f"{check}: @*r{{{status}}}"))
numdigits = len(str(len(errors)))
for idx, error in enumerate(errors):
print(str(idx + 1) + ". " + str(error))
print(f"{idx + 1:>{numdigits}}. {error}")
raise SystemExit(1)
else:
msg = "{0}: 0 issues found.".format(check)
header = "@*b{" + msg + "}"
print(cl.colorize(header))
print(cl.colorize(f"{check}: @*g{{passed}}"))

View File

@@ -16,11 +16,11 @@
import spack.bootstrap.config
import spack.bootstrap.core
import spack.config
import spack.main
import spack.mirror
import spack.spec
import spack.stage
import spack.util.path
import spack.util.spack_yaml
from spack.cmd.common import arguments
description = "manage bootstrap configuration"

View File

@@ -23,14 +23,9 @@
import spack.error
import spack.mirror
import spack.oci.oci
import spack.oci.opener
import spack.relocate
import spack.repo
import spack.spec
import spack.stage
import spack.store
import spack.user_environment
import spack.util.crypto
import spack.util.parallel
import spack.util.url as url_util
import spack.util.web as web_util

View File

@@ -4,6 +4,7 @@
# SPDX-License-Identifier: (Apache-2.0 OR MIT)
import spack.cmd
import spack.spec
from spack.cmd.common import arguments
description = "change an existing spec in an environment"

View File

@@ -15,7 +15,6 @@
import spack.repo
import spack.spec
import spack.stage
import spack.util.crypto
import spack.util.web as web_util
from spack.cmd.common import arguments
from spack.package_base import (

View File

@@ -19,7 +19,6 @@
import spack.cmd.buildcache as buildcache
import spack.config as cfg
import spack.environment as ev
import spack.environment.depfile
import spack.hash_types as ht
import spack.mirror
import spack.util.gpg as gpg_util

View File

@@ -10,11 +10,9 @@
import llnl.util.filesystem
import llnl.util.tty as tty
import spack.bootstrap
import spack.caches
import spack.cmd.test
import spack.cmd
import spack.config
import spack.repo
import spack.stage
import spack.store
import spack.util.path

View File

@@ -7,6 +7,7 @@
import copy
import os
import re
import shlex
import sys
from argparse import ArgumentParser, Namespace
from typing import IO, Any, Callable, Dict, Iterable, List, Optional, Sequence, Set, Tuple, Union
@@ -16,8 +17,10 @@
from llnl.util.tty.colify import colify
import spack.cmd
import spack.config
import spack.main
import spack.paths
import spack.platforms
from spack.main import section_descriptions
description = "list available spack commands"
@@ -139,7 +142,7 @@ def usage(self, usage: str) -> str:
cmd = self.parser.prog.replace(" ", "-")
if cmd in self.documented:
string += "\n:ref:`More documentation <cmd-{0}>`\n".format(cmd)
string = f"{string}\n:ref:`More documentation <cmd-{cmd}>`\n"
return string
@@ -249,33 +252,27 @@ def body(
Function body.
"""
if positionals:
return """
return f"""
if $list_options
then
{0}
{self.optionals(optionals)}
else
{1}
{self.positionals(positionals)}
fi
""".format(
self.optionals(optionals), self.positionals(positionals)
)
"""
elif subcommands:
return """
return f"""
if $list_options
then
{0}
{self.optionals(optionals)}
else
{1}
{self.subcommands(subcommands)}
fi
""".format(
self.optionals(optionals), self.subcommands(subcommands)
)
"""
else:
return """
{0}
""".format(
self.optionals(optionals)
)
return f"""
{self.optionals(optionals)}
"""
def positionals(self, positionals: Sequence[str]) -> str:
"""Return the syntax for reporting positional arguments.
@@ -304,7 +301,7 @@ def optionals(self, optionals: Sequence[str]) -> str:
Returns:
Syntax for optional flags.
"""
return 'SPACK_COMPREPLY="{0}"'.format(" ".join(optionals))
return f'SPACK_COMPREPLY="{" ".join(optionals)}"'
def subcommands(self, subcommands: Sequence[str]) -> str:
"""Return the syntax for reporting subcommands.
@@ -315,7 +312,7 @@ def subcommands(self, subcommands: Sequence[str]) -> str:
Returns:
Syntax for subcommand parsers
"""
return 'SPACK_COMPREPLY="{0}"'.format(" ".join(subcommands))
return f'SPACK_COMPREPLY="{" ".join(subcommands)}"'
# Map argument destination names to their complete commands
@@ -395,7 +392,7 @@ def _fish_dest_get_complete(prog: str, dest: str) -> Optional[str]:
subcmd = s[1] if len(s) == 2 else ""
for (prog_key, pos_key), value in _dest_to_fish_complete.items():
if subcmd.startswith(prog_key) and re.match("^" + pos_key + "$", dest):
if subcmd.startswith(prog_key) and re.match(f"^{pos_key}$", dest):
return value
return None
@@ -427,24 +424,6 @@ def format(self, cmd: Command) -> str:
+ self.complete(cmd.prog, positionals, optionals, subcommands)
)
def _quote(self, string: str) -> str:
"""Quote string and escape special characters if necessary.
Args:
string: Input string.
Returns:
Quoted string.
"""
# Goal here is to match fish_indent behavior
# Strings without spaces (or other special characters) do not need to be escaped
if not any([sub in string for sub in [" ", "'", '"']]):
return string
string = string.replace("'", r"\'")
return f"'{string}'"
def optspecs(
self,
prog: str,
@@ -463,7 +442,7 @@ def optspecs(
optspec_var = "__fish_spack_optspecs_" + prog.replace(" ", "_").replace("-", "_")
if optionals is None:
return "set -g %s\n" % optspec_var
return f"set -g {optspec_var}\n"
# Build optspec by iterating over options
args = []
@@ -490,11 +469,11 @@ def optspecs(
long = [f[2:] for f in flags if f.startswith("--")]
while len(short) > 0 and len(long) > 0:
arg = "%s/%s%s" % (short.pop(), long.pop(), required)
arg = f"{short.pop()}/{long.pop()}{required}"
while len(short) > 0:
arg = "%s/%s" % (short.pop(), required)
arg = f"{short.pop()}/{required}"
while len(long) > 0:
arg = "%s%s" % (long.pop(), required)
arg = f"{long.pop()}{required}"
args.append(arg)
@@ -503,7 +482,7 @@ def optspecs(
# indicate that such subcommand exists.
args = " ".join(args)
return "set -g %s %s\n" % (optspec_var, args)
return f"set -g {optspec_var} {args}\n"
@staticmethod
def complete_head(
@@ -524,12 +503,14 @@ def complete_head(
subcmd = s[1] if len(s) == 2 else ""
if index is None:
return "complete -c %s -n '__fish_spack_using_command %s'" % (s[0], subcmd)
return f"complete -c {s[0]} -n '__fish_spack_using_command {subcmd}'"
elif nargs in [argparse.ZERO_OR_MORE, argparse.ONE_OR_MORE, argparse.REMAINDER]:
head = "complete -c %s -n '__fish_spack_using_command_pos_remainder %d %s'"
return (
f"complete -c {s[0]} -n '__fish_spack_using_command_pos_remainder "
f"{index} {subcmd}'"
)
else:
head = "complete -c %s -n '__fish_spack_using_command_pos %d %s'"
return head % (s[0], index, subcmd)
return f"complete -c {s[0]} -n '__fish_spack_using_command_pos {index} {subcmd}'"
def complete(
self,
@@ -597,25 +578,18 @@ def positionals(
if choices is not None:
# If there are choices, we provide a completion for all possible values.
commands.append(head + " -f -a %s" % self._quote(" ".join(choices)))
commands.append(f"{head} -f -a {shlex.quote(' '.join(choices))}")
else:
# Otherwise, we try to find a predefined completion for it
value = _fish_dest_get_complete(prog, args)
if value is not None:
commands.append(head + " " + value)
commands.append(f"{head} {value}")
return "\n".join(commands) + "\n"
def prog_comment(self, prog: str) -> str:
"""Return a comment line for the command.
Args:
prog: Program name.
Returns:
Comment line.
"""
return "\n# %s\n" % prog
"""Return a comment line for the command."""
return f"\n# {prog}\n"
def optionals(
self,
@@ -658,28 +632,28 @@ def optionals(
for f in flags:
if f.startswith("--"):
long = f[2:]
prefix += " -l %s" % long
prefix = f"{prefix} -l {long}"
elif f.startswith("-"):
short = f[1:]
assert len(short) == 1
prefix += " -s %s" % short
prefix = f"{prefix} -s {short}"
# Check if option require argument.
# Currently multi-argument options are not supported, so we treat it like one argument.
if nargs != 0:
prefix += " -r"
prefix = f"{prefix} -r"
if dest is not None:
# If there are choices, we provide a completion for all possible values.
commands.append(prefix + " -f -a %s" % self._quote(" ".join(dest)))
commands.append(f"{prefix} -f -a {shlex.quote(' '.join(dest))}")
else:
# Otherwise, we try to find a predefined completion for it
value = _fish_dest_get_complete(prog, dest)
if value is not None:
commands.append(prefix + " " + value)
commands.append(f"{prefix} {value}")
if help:
commands.append(prefix + " -d %s" % self._quote(help))
commands.append(f"{prefix} -d {shlex.quote(help)}")
return "\n".join(commands) + "\n"
@@ -697,11 +671,11 @@ def subcommands(self, prog: str, subcommands: List[Tuple[ArgumentParser, str, st
head = self.complete_head(prog, 0)
for _, subcommand, help in subcommands:
command = head + " -f -a %s" % self._quote(subcommand)
command = f"{head} -f -a {shlex.quote(subcommand)}"
if help is not None and len(help) > 0:
help = help.split("\n")[0]
command += " -d %s" % self._quote(help)
command = f"{command} -d {shlex.quote(help)}"
commands.append(command)
@@ -747,7 +721,7 @@ def rst_index(out: IO) -> None:
for i, cmd in enumerate(sorted(commands)):
description = description.capitalize() if i == 0 else ""
ref = ":ref:`%s <spack-%s>`" % (cmd, cmd)
ref = f":ref:`{cmd} <spack-{cmd}>`"
comma = "," if i != len(commands) - 1 else ""
bar = "| " if i % 8 == 0 else " "
out.write(line % (description, bar + ref + comma))
@@ -858,10 +832,10 @@ def _commands(parser: ArgumentParser, args: Namespace) -> None:
# check header first so we don't open out files unnecessarily
if args.header and not os.path.exists(args.header):
tty.die("No such file: '%s'" % args.header)
tty.die(f"No such file: '{args.header}'")
if args.update:
tty.msg("Updating file: %s" % args.update)
tty.msg(f"Updating file: {args.update}")
with open(args.update, "w") as f:
prepend_header(args, f)
formatter(args, f)

View File

@@ -15,7 +15,6 @@
import spack.deptypes as dt
import spack.environment as ev
import spack.mirror
import spack.modules
import spack.reporters
import spack.spec
import spack.store

View File

@@ -9,6 +9,7 @@
import llnl.util.tty as tty
import spack.cmd
import spack.spec
display_args = {"long": True, "show_flags": False, "variants": False, "indent": 4}

View File

@@ -10,7 +10,6 @@
import spack.cmd
import spack.deptypes as dt
import spack.error
import spack.paths
import spack.spec
import spack.store
from spack import build_environment, traverse

View File

@@ -13,9 +13,9 @@
import spack.config
import spack.environment as ev
import spack.repo
import spack.error
import spack.schema.env
import spack.schema.packages
import spack.spec
import spack.store
import spack.util.spack_yaml as syaml
from spack.cmd.common import arguments
@@ -256,7 +256,7 @@ def config_remove(args):
existing.pop(value, None)
else:
# This should be impossible to reach
raise spack.config.ConfigError("Config has nested non-dict values")
raise spack.error.ConfigError("Config has nested non-dict values")
spack.config.set(path, existing, scope)
@@ -340,7 +340,7 @@ def _config_change(config_path, match_spec_str=None):
if not changed:
existing_requirements = spack.config.get(key_path)
if isinstance(existing_requirements, str):
raise spack.config.ConfigError(
raise spack.error.ConfigError(
"'config change' needs to append a requirement,"
" but existing require: config is not a list"
)
@@ -536,11 +536,11 @@ def config_prefer_upstream(args):
# Get and list all the variants that differ from the default.
variants = []
for var_name, variant in spec.variants.items():
if var_name in ["patches"] or var_name not in spec.package.variants:
if var_name in ["patches"] or not spec.package.has_variant(var_name):
continue
variant_desc, _ = spec.package.variants[var_name]
if variant.value != variant_desc.default:
vdef = spec.package.get_variant(var_name)
if variant.value != vdef.default:
variants.append(str(variant))
variants.sort()
variants = " ".join(variants)

View File

@@ -13,7 +13,6 @@
import spack.repo
import spack.stage
import spack.util.web
from spack.spec import Spec
from spack.url import (
UndetectableNameError,

View File

@@ -13,11 +13,12 @@
import llnl.util.tty as tty
from llnl.util.filesystem import working_dir
import spack.config
import spack
import spack.paths
import spack.platforms
import spack.spec
import spack.store
import spack.util.git
from spack.main import get_version
from spack.util.executable import which
description = "debugging commands for troubleshooting Spack"
@@ -89,7 +90,7 @@ def report(args):
host_os = host_platform.operating_system("frontend")
host_target = host_platform.target("frontend")
architecture = spack.spec.ArchSpec((str(host_platform), str(host_os), str(host_target)))
print("* **Spack:**", get_version())
print("* **Spack:**", spack.get_version())
print("* **Python:**", platform.python_version())
print("* **Platform:**", architecture)

View File

@@ -11,7 +11,6 @@
import spack.cmd
import spack.environment as ev
import spack.package_base
import spack.repo
import spack.store
from spack.cmd.common import arguments

View File

@@ -14,13 +14,13 @@
installation and its deprecator.
"""
import argparse
import os
import llnl.util.tty as tty
from llnl.util.symlink import symlink
import spack.cmd
import spack.environment as ev
import spack.installer
import spack.store
from spack.cmd.common import arguments
from spack.database import InstallStatuses
@@ -76,12 +76,7 @@ def setup_parser(sp):
)
sp.add_argument(
"-l",
"--link-type",
type=str,
default="soft",
choices=["soft", "hard"],
help="type of filesystem link to use for deprecation (default soft)",
"-l", "--link-type", type=str, default=None, choices=["soft", "hard"], help="(deprecated)"
)
sp.add_argument(
@@ -91,6 +86,9 @@ def setup_parser(sp):
def deprecate(parser, args):
"""Deprecate one spec in favor of another"""
if args.link_type is not None:
tty.warn("The --link-type option is deprecated and will be removed in a future release.")
env = ev.active_environment()
specs = spack.cmd.parse_specs(args.specs)
@@ -144,7 +142,5 @@ def deprecate(parser, args):
if not answer:
tty.die("Will not deprecate any packages.")
link_fn = os.link if args.link_type == "hard" else symlink
for dcate, dcator in zip(all_deprecate, all_deprecators):
dcate.package.do_deprecate(dcator, link_fn)
spack.installer.deprecate(dcate, dcator, symlink)

View File

@@ -8,10 +8,13 @@
import llnl.util.tty as tty
import spack.build_environment
import spack.cmd
import spack.cmd.common.arguments
import spack.config
import spack.repo
from spack.cmd.common import arguments
from spack.installer import PackageInstaller
description = "developer build: build from code in current working directory"
section = "build"
@@ -129,9 +132,9 @@ def dev_build(self, args):
elif args.test == "root":
tests = [spec.name for spec in specs]
spec.package.do_install(
PackageInstaller(
[spec.package],
tests=tests,
make_jobs=args.jobs,
keep_prefix=args.keep_prefix,
install_deps=not args.ignore_deps,
verbose=not args.quiet,
@@ -139,7 +142,7 @@ def dev_build(self, args):
stop_before=args.before,
skip_patch=args.skip_patch,
stop_at=args.until,
)
).install()
# drop into the build environment of the package?
if args.shell is not None:

View File

@@ -10,7 +10,6 @@
import spack.cmd
import spack.config
import spack.fetch_strategy
import spack.package_base
import spack.repo
import spack.spec
import spack.stage

View File

@@ -12,7 +12,6 @@
import spack.cmd
import spack.environment as ev
import spack.solver.asp as asp
import spack.util.environment
import spack.util.spack_json as sjson
from spack.cmd.common import arguments

View File

@@ -21,15 +21,12 @@
import spack.cmd
import spack.cmd.common
import spack.cmd.common.arguments
import spack.cmd.install
import spack.cmd.modules
import spack.cmd.uninstall
import spack.config
import spack.environment as ev
import spack.environment.depfile as depfile
import spack.environment.environment
import spack.environment.shell
import spack.schema.env
import spack.spec
import spack.tengine
from spack.cmd.common import arguments
from spack.util.environment import EnvironmentModifications

View File

@@ -18,9 +18,9 @@
import spack.cray_manifest as cray_manifest
import spack.detection
import spack.error
import spack.package_base
import spack.repo
import spack.spec
import spack.util.environment
from spack.cmd.common import arguments
description = "manage external packages in Spack configuration"

View File

@@ -8,7 +8,6 @@
import spack.cmd
import spack.config
import spack.environment as ev
import spack.repo
import spack.traverse
from spack.cmd.common import arguments

View File

@@ -10,10 +10,11 @@
import llnl.util.tty as tty
import llnl.util.tty.color as color
import spack.bootstrap
import spack.cmd as cmd
import spack.config
import spack.environment as ev
import spack.repo
import spack.spec
import spack.store
from spack.cmd.common import arguments
from spack.database import InstallStatuses

View File

@@ -16,6 +16,7 @@
import spack.install_test
import spack.repo
import spack.spec
import spack.variant
import spack.version
from spack.cmd.common import arguments
from spack.package_base import preferred_version
@@ -48,6 +49,7 @@ def setup_parser(subparser):
options = [
("--detectable", print_detectable.__doc__),
("--maintainers", print_maintainers.__doc__),
("--namespace", print_namespace.__doc__),
("--no-dependencies", "do not " + print_dependencies.__doc__),
("--no-variants", "do not " + print_variants.__doc__),
("--no-versions", "do not " + print_versions.__doc__),
@@ -189,6 +191,15 @@ def print_maintainers(pkg, args):
color.cprint(section_title("Maintainers: ") + mnt)
def print_namespace(pkg, args):
"""output package namespace"""
repo = spack.repo.PATH.get_repo(pkg.namespace)
color.cprint("")
color.cprint(section_title("Namespace:"))
color.cprint(f" @c{{{repo.namespace}}} at {repo.root}")
def print_phases(pkg, args):
"""output installation phases"""
@@ -323,26 +334,6 @@ def _fmt_variant(variant, max_name_default_len, indent, when=None, out=None):
out.write("\n")
def _variants_by_name_when(pkg):
"""Adaptor to get variants keyed by { name: { when: { [Variant...] } }."""
# TODO: replace with pkg.variants_by_name(when=True) when unified directive dicts are merged.
variants = {}
for name, (variant, whens) in sorted(pkg.variants.items()):
for when in whens:
variants.setdefault(name, {}).setdefault(when, []).append(variant)
return variants
def _variants_by_when_name(pkg):
"""Adaptor to get variants keyed by { when: { name: Variant } }"""
# TODO: replace with pkg.variants when unified directive dicts are merged.
variants = {}
for name, (variant, whens) in pkg.variants.items():
for when in whens:
variants.setdefault(when, {})[name] = variant
return variants
def _print_variants_header(pkg):
"""output variants"""
@@ -353,32 +344,22 @@ def _print_variants_header(pkg):
color.cprint("")
color.cprint(section_title("Variants:"))
variants_by_name = _variants_by_name_when(pkg)
# Calculate the max length of the "name [default]" part of the variant display
# This lets us know where to print variant values.
max_name_default_len = max(
color.clen(_fmt_name_and_default(variant))
for name, when_variants in variants_by_name.items()
for variants in when_variants.values()
for variant in variants
for name in pkg.variant_names()
for _, variant in pkg.variant_definitions(name)
)
return max_name_default_len, variants_by_name
def _unconstrained_ver_first(item):
"""sort key that puts specs with open version ranges first"""
spec, _ = item
return (spack.version.any_version not in spec.versions, spec)
return max_name_default_len
def print_variants_grouped_by_when(pkg):
max_name_default_len, _ = _print_variants_header(pkg)
max_name_default_len = _print_variants_header(pkg)
indent = 4
variants = _variants_by_when_name(pkg)
for when, variants_by_name in sorted(variants.items(), key=_unconstrained_ver_first):
for when, variants_by_name in pkg.variant_items():
padded_values = max_name_default_len + 4
start_indent = indent
@@ -396,15 +377,14 @@ def print_variants_grouped_by_when(pkg):
def print_variants_by_name(pkg):
max_name_default_len, variants_by_name = _print_variants_header(pkg)
max_name_default_len = _print_variants_header(pkg)
max_name_default_len += 4
indent = 4
for name, when_variants in variants_by_name.items():
for when, variants in sorted(when_variants.items(), key=_unconstrained_ver_first):
for variant in variants:
_fmt_variant(variant, max_name_default_len, indent, when, out=sys.stdout)
sys.stdout.write("\n")
for name in pkg.variant_names():
for when, variant in pkg.variant_definitions(name):
_fmt_variant(variant, max_name_default_len, indent, when, out=sys.stdout)
sys.stdout.write("\n")
def print_variants(pkg, args):
@@ -522,6 +502,7 @@ def info(parser, args):
# Now output optional information in expected order
sections = [
(args.all or args.maintainers, print_maintainers),
(args.all or args.namespace, print_namespace),
(args.all or args.detectable, print_detectable),
(args.all or args.tags, print_tags),
(args.all or not args.no_versions, print_versions),

View File

@@ -13,18 +13,15 @@
from llnl.string import plural
from llnl.util import lang, tty
import spack.build_environment
import spack.cmd
import spack.config
import spack.environment as ev
import spack.fetch_strategy
import spack.package_base
import spack.paths
import spack.report
import spack.spec
import spack.store
from spack.cmd.common import arguments
from spack.error import SpackError
from spack.error import InstallError, SpackError
from spack.installer import PackageInstaller
description = "build and install packages"
@@ -287,7 +284,7 @@ def require_user_confirmation_for_overwrite(concrete_specs, args):
tty.die("Reinstallation aborted.")
def _dump_log_on_error(e: spack.build_environment.InstallError):
def _dump_log_on_error(e: InstallError):
e.print_context()
assert e.pkg, "Expected InstallError to include the associated package"
if not os.path.exists(e.pkg.log_path):
@@ -352,7 +349,7 @@ def reporter_factory(specs):
install_with_active_env(env, args, install_kwargs, reporter_factory)
else:
install_without_active_env(args, install_kwargs, reporter_factory)
except spack.build_environment.InstallError as e:
except InstallError as e:
if args.show_log_on_error:
_dump_log_on_error(e)
raise
@@ -477,5 +474,5 @@ def install_without_active_env(args, install_kwargs, reporter_factory):
installs = [s.package for s in concrete_specs]
install_kwargs["explicit"] = [s.dag_hash() for s in concrete_specs]
builder = PackageInstaller(installs, install_kwargs)
builder = PackageInstaller(installs, **install_kwargs)
builder.install()

View File

@@ -6,11 +6,10 @@
import sys
import spack.cmd
import spack.cmd.find
import spack.cmd.common
import spack.environment as ev
import spack.store
import spack.user_environment as uenv
import spack.util.environment
from spack.cmd.common import arguments
description = "add package to the user environment"

View File

@@ -8,9 +8,6 @@
from llnl.util import tty
import spack.cmd
import spack.error
import spack.package_base
import spack.repo
import spack.store
from spack.cmd.common import arguments
from spack.database import InstallStatuses

View File

@@ -17,7 +17,6 @@
import spack.mirror
import spack.repo
import spack.spec
import spack.util.path
import spack.util.web as web_util
from spack.cmd.common import arguments
from spack.error import SpackError

View File

@@ -15,6 +15,7 @@
import spack.cmd
import spack.config
import spack.error
import spack.modules
import spack.modules.common
import spack.repo
@@ -124,13 +125,13 @@ def check_module_set_name(name):
names = [k for k in modules if k != "prefix_inspections"]
if not names:
raise spack.config.ConfigError(
raise spack.error.ConfigError(
f"Module set configuration is missing. Cannot use module set '{name}'"
)
pretty_names = "', '".join(names)
raise spack.config.ConfigError(
raise spack.error.ConfigError(
f"Cannot use invalid module set '{name}'.",
f"Valid module set names are: '{pretty_names}'.",
)
@@ -172,7 +173,7 @@ def loads(module_type, specs, args, out=None):
modules = list(
(
spec,
spack.modules.common.get_module(
spack.modules.get_module(
module_type,
spec,
get_full_path=False,
@@ -221,7 +222,7 @@ def find(module_type, specs, args):
try:
modules = [
spack.modules.common.get_module(
spack.modules.get_module(
module_type,
spec,
args.full_path,
@@ -232,7 +233,7 @@ def find(module_type, specs, args):
]
modules.append(
spack.modules.common.get_module(
spack.modules.get_module(
module_type,
single_spec,
args.full_path,

View File

@@ -9,7 +9,6 @@
import spack.config
import spack.environment as ev
import spack.package_base
import spack.repo
import spack.traverse
from spack.cmd.common import arguments

View File

@@ -12,7 +12,6 @@
from llnl.util.tty.colify import colify
import spack.cmd
import spack.paths
import spack.repo
import spack.util.executable as exe
import spack.util.package_hash as ph

View File

@@ -78,8 +78,8 @@ def python(parser, args, unknown_args):
# Run user choice of interpreter
if args.python_interpreter == "ipython":
return spack.cmd.python.ipython_interpreter(args)
return spack.cmd.python.python_interpreter(args)
return ipython_interpreter(args)
return python_interpreter(args)
def ipython_interpreter(args):

View File

@@ -6,7 +6,6 @@
import llnl.util.tty as tty
import spack.cmd
import spack.repo
from spack.cmd.common import arguments
description = "revert checked out package source code"

View File

@@ -12,11 +12,12 @@
import spack
import spack.cmd
import spack.cmd.common.arguments
import spack.config
import spack.environment
import spack.hash_types as ht
import spack.package_base
import spack.solver.asp as asp
import spack.spec
from spack.cmd.common import arguments
description = "concretize a specs using an ASP solver"

View File

@@ -14,6 +14,7 @@
import spack.hash_types as ht
import spack.spec
import spack.store
import spack.traverse
from spack.cmd.common import arguments
description = "show what would be installed, given a spec"

View File

@@ -11,8 +11,6 @@
import spack.config
import spack.environment as ev
import spack.package_base
import spack.repo
import spack.stage
import spack.traverse
from spack.cmd.common import arguments

View File

@@ -9,8 +9,8 @@
import llnl.util.tty as tty
import llnl.util.tty.colify as colify
import spack.environment
import spack.repo
import spack.store
import spack.tag
description = "show package tags and associated packages"

View File

@@ -15,11 +15,12 @@
from llnl.util.tty import colify
import spack.cmd
import spack.config
import spack.environment as ev
import spack.install_test
import spack.package_base
import spack.repo
import spack.report
import spack.store
from spack.cmd.common import arguments
description = "run spack's tests for an install"

View File

@@ -10,6 +10,7 @@
from llnl.util.filesystem import working_dir
import spack
import spack.cmd
import spack.config
import spack.paths
import spack.util.git

View File

@@ -6,6 +6,7 @@
import llnl.util.tty as tty
import spack.cmd
import spack.config
from spack.cmd.common import arguments
description = "remove specs from an environment"

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