Version bump to 0.9.1

- Bugfixes for spack find
- 0.9.1 can read specs from current develop.

.codecov.yml

@@ -1,34 +0,0 @@
-coverage:
-  precision: 2
-  round: nearest
-  range: 60...90
-  status:
-    project:
-      default:
-        threshold: 0.2%
-
-ignore:
-  - lib/spack/spack/test/.*
-  - lib/spack/docs/.*
-  - lib/spack/external/.*
-  - share/spack/qa/.*
-
-comment: off
-
-# Inline codecov annotations make the code hard to read, and they add
-# annotations in files that seemingly have nothing to do with the PR.
-github_checks:
-    annotations: false
-
-# Attempt to fix "Missing base commit" messages in the codecov UI.
-# Because we do not run full tests on package PRs, package PRs' merge
-# commits on `develop` don't have coverage info.  It appears that
-# codecov will give you an error if the pseudo-base's coverage data
-# doesn't all apply properly to the real PR base.
-#
-# See here for docs:
-#   https://docs.codecov.com/docs/comparing-commits#pseudo-comparison
-# See here for another potential solution:
-#   https://community.codecov.com/t/2480/15
-codecov:
-  allow_coverage_offsets: true

.coveragerc

@@ -0,0 +1,34 @@
+# -*- conf -*-
+# .coveragerc to control coverage.py
+[run]
+branch = True
+source = lib
+omit =
+     lib/spack/spack/test/*
+     lib/spack/env/*
+     lib/spack/docs/*
+     lib/spack/external/*
+
+[report]
+# Regexes for lines to exclude from consideration
+exclude_lines =
+    # Have to re-enable the standard pragma
+    pragma: no cover
+
+    # Don't complain about missing debug-only code:
+    def __repr__
+    if self\.debug
+
+    # Don't complain if tests don't hit defensive assertion code:
+    raise AssertionError
+    raise NotImplementedError
+
+    # Don't complain if non-runnable code isn't run:
+    if 0:
+    if False:
+    if __name__ == .__main__.:
+
+ignore_errors = True
+
+[html]
+directory = htmlcov

.dockerignore

@@ -1,11 +0,0 @@
-.git/*
-opt/spack/*
-
-/etc/spack/*
-!/etc/spack/defaults
-
-share/spack/dotkit/*
-share/spack/lmod/*
-share/spack/modules/*
-lib/spack/spack/test/*
-var/spack/cache/*

.flake8

@@ -1,73 +1,20 @@
 # -*- conf -*-
-# flake8 settings for Spack core files.
+# flake8 settings for Spack.
 #
-# These exceptions are for Spack core files. We're slightly more lenient
-# with packages.  See .flake8_packages for that.
+# Below we describe which flake8 checks Spack ignores and what the
+# rationale is.
 #
-# E1: Indentation
-# - E129: visually indented line with same indent as next logical line
-#
-# E2: Whitespace
+# Let people line things up nicely:
 # - E221: multiple spaces before operator
-# - E241: multiple spaces after ','
-# - E272: multiple spaces before keyword
+# - E241: multiple spaces after ‘,’
 #
-# E7: Statement
-# - E731: do not assign a lambda expression, use a def
+# Spack allows wildcard imports:
+# - F403: disable wildcard import
 #
-# W5: Line break warning
-# - W503: line break before binary operator
-# - W504: line break after binary operator
-#
-# These are required to get the package.py files to test clean:
-# - F999: syntax error in doctest
-#
-# N8: PEP8-naming
-# - N801: class names should use CapWords convention
-# - N813: camelcase imported as lowercase
-# - N814: camelcase imported as constant
-#
-# F4: pyflakes import checks, these are now checked by mypy more precisely
-# - F403: from module import *
-# - F405: undefined name or from *
-#
-# Black ignores, these are incompatible with black style and do not follow PEP-8
-# - E203: white space around slice operators can be required, ignore : warn
-# - W503: see above, already ignored for line-breaks
+# These are required to get the package.py files to test clean.
+# - F821: undefined name (needed for cmake, configure, etc.)
+# - F999: name name be undefined or undefined from star imports.
 #
 [flake8]
-ignore = E129,E221,E241,E272,E731,W503,W504,F999,N801,N813,N814,F403,F405
-max-line-length = 88
-
-# F4: Import
-# - F405: `name` may be undefined, or undefined from star imports: `module`
-#
-# F8: Name
-# - F821: undefined name `name`
-#
-per-file-ignores =
-  var/spack/repos/*/package.py:F405,F821
-
-# exclude things we usually do not want linting for.
-# These still get linted when passed explicitly, as when spack flake8 passes
-# them on the command line.
-exclude =
-  .git
-  etc/
-  opt/
-  share/
-  var/spack/cache/
-  var/spack/gpg*/
-  var/spack/junit-report/
-  var/spack/mock-configs/
-  lib/spack/external
-  __pycache__
-  var
-
-format = spack
-
-[flake8:local-plugins]
-report =
-  spack = flake8_formatter:SpackFormatter
-paths =
-  ./share/spack/qa/
+ignore = E221,E241,F403,F821,F999
+max-line-length = 79

.gitattributes

@@ -1,3 +0,0 @@
-*.py diff=python
-*.lp linguist-language=Prolog
-lib/spack/external/* linguist-vendored

.github/CODE_OF_CONDUCT.md

@@ -1,46 +0,0 @@
-# Spack Community Code of Conduct
-
-## Our Pledge
-
-In the interest of fostering an open and welcoming environment, we as contributors and maintainers pledge to making participation in our project and our community a harassment-free experience for everyone, regardless of age, body size, disability, ethnicity, gender identity and expression, level of experience, nationality, personal appearance, race, religion, or sexual identity and orientation.
-
-## Our Standards
-
-Examples of behavior that contributes to creating a positive environment include:
-
-* Using welcoming and inclusive language
-* Being respectful of differing viewpoints and experiences
-* Gracefully accepting constructive criticism
-* Focusing on what is best for the community
-* Showing empathy towards other community members
-
-Examples of unacceptable behavior by participants include:
-
-* The use of sexualized language or imagery and unwelcome sexual attention or advances
-* Trolling, insulting/derogatory comments, and personal or political attacks
-* Public or private harassment
-* Publishing others' private information, such as a physical or electronic address, without explicit permission
-* Other conduct which could reasonably be considered inappropriate in a professional setting
-
-## Our Responsibilities
-
-Project maintainers are responsible for clarifying the standards of acceptable behavior and are expected to take appropriate and fair corrective action in response to any instances of unacceptable behavior.
-
-Project maintainers have the right and responsibility to remove, edit, or reject comments, commits, code, wiki edits, issues, and other contributions that are not aligned to this Code of Conduct, or to ban temporarily or permanently any contributor for other behaviors that they deem inappropriate, threatening, offensive, or harmful.
-
-## Scope
-
-This Code of Conduct applies both within project spaces and in public spaces when an individual is representing the Spack project or its community. Examples of representing the project or community include using an official project e-mail address, posting via an official social media account, or acting as an appointed representative at an online or offline event. Representation of the project may be further defined and clarified by Spack maintainers.
-
-## Enforcement
-
-Instances of abusive, harassing, or otherwise unacceptable behavior may be reported by contacting the project team at maintainers@spack.io. The project team will review and investigate all complaints, and will respond in a way that it deems appropriate to the circumstances. The project team is obligated to maintain confidentiality with regard to the reporter of an incident. Further details of specific enforcement policies may be posted separately.
-
-Project maintainers who do not follow or enforce the Code of Conduct in good faith may face temporary or permanent repercussions as determined by other members of the project's leadership.
-
-## Attribution
-
-This Code of Conduct is adapted from the [Contributor Covenant][homepage], version 1.4, available at [http://contributor-covenant.org/version/1/4][version]
-
-[homepage]: http://contributor-covenant.org
-[version]: http://contributor-covenant.org/version/1/4/

.github/CONTRIBUTING.md

@@ -1,8 +0,0 @@
-# Contributing to Spack
-
-All contributions to Spack must be made under both the Apache License,
-Version 2.0 (Apache-2.0) and the MIT license (MIT).
-
-Before contributing to Spack, you should read the
-[Contribution Guide](https://spack.readthedocs.io/en/latest/contribution_guide.html),
-which is maintained as part of Spack's documentation.

.github/ISSUE_TEMPLATE/bug_report.yml

@@ -1,58 +0,0 @@
-name: "\U0001F41E Bug report"
-description: Report a bug in the core of Spack (command not working as expected, etc.)
-labels: [bug, triage]
-body:
-  - type: textarea
-    id: reproduce
-    attributes:
-      label: Steps to reproduce
-      description: |
-        Explain, in a clear and concise way, the command you ran and the result you were trying to achieve.
-        Example: "I ran `spack find` to list all the installed packages and ..."
-      placeholder: |
-        ```console
-        $ spack <command1> <spec>
-        $ spack <command2> <spec>
-        ...
-        ```
-    validations:
-      required: true
-  - type: textarea
-    id: error
-    attributes:
-      label: Error message
-      description: |
-        If Spack reported an error, provide the error message. If it did not report an error but the output appears incorrect, provide the incorrect output. If there was no error message and no output but the result is incorrect, describe how it does not match what you expect.
-      placeholder: |
-        ```console
-        $ spack --debug --stacktrace <command>
-        ```
-  - type: textarea
-    id: information
-    attributes:
-      label: Information on your system
-      description: Please include the output of `spack debug report`
-    validations:
-      required: true
-  - type: markdown
-    attributes:
-      value: |
-        If you have any relevant configuration detail (custom `packages.yaml` or `modules.yaml`, etc.) you can add that here as well.
-  - type: checkboxes
-    id: checks
-    attributes:
-      label: General information
-      options:
-        - label: I have run `spack debug report` and reported the version of Spack/Python/Platform
-          required: true
-        - label: I have searched the issues of this repo and believe this is not a duplicate
-          required: true
-        - label: I have run the failing commands in debug mode and reported the output
-          required: true
-  - type: markdown
-    attributes:
-      value: |
-        We encourage you to try, as much as possible, to reduce your problem to the minimal example that still reproduces the issue. That would help us a lot in fixing it quickly and effectively!
-        If you want to ask a question about the tool (how to use it, what it can currently do, etc.), try the `#general` channel on [our Slack](https://slack.spack.io/) first. We have a welcoming community and chances are you'll get your reply faster and without opening an issue.
-        
-        Other than that, thanks for taking the time to contribute to Spack!

.github/ISSUE_TEMPLATE/build_error.yml

@@ -1,64 +0,0 @@
-name: "\U0001F4A5 Build error"
-description: Some package in Spack didn't build correctly
-title: "Installation issue: "
-labels: [build-error]
-body:
-  - type: markdown
-    attributes:
-      value: |
-        Thanks for taking the time to report this build failure. To proceed with the report please:
-        1. Title the issue `Installation issue: <name-of-the-package>`.
-        2. Provide the information required below.
-        
-        We encourage you to try, as much as possible, to reduce your problem to the minimal example that still reproduces the issue. That would help us a lot in fixing it quickly and effectively!
-  - type: textarea
-    id: reproduce
-    attributes:
-      label: Steps to reproduce the issue
-      description: |
-        Fill in the exact spec you are trying to build and the relevant part of the error message
-      placeholder: |
-        ```console
-        $ spack install <spec>
-        ...
-        ```
-    validations:
-      required: true
-  - type: textarea
-    id: information
-    attributes:
-      label: Information on your system
-      description: Please include the output of `spack debug report`
-    validations:
-      required: true
-  - type: markdown
-    attributes:
-      value: |
-        If you have any relevant configuration detail (custom `packages.yaml` or `modules.yaml`, etc.) you can add that here as well.
-  - type: textarea
-    id: additional_information
-    attributes:
-      label: Additional information
-      description: |
-        Please upload the following files:
-        * **`spack-build-out.txt`**
-        * **`spack-build-env.txt`**
-        
-        They should be present in the stage directory of the failing build. Also upload any `config.log` or similar file if one exists.
-  - type: markdown
-    attributes:
-      value: |
-        Some packages have maintainers who have volunteered to debug build failures. Run `spack maintainers <name-of-the-package>` and **@mention** them here if they exist.
-  - type: checkboxes
-    id: checks
-    attributes:
-      label: General information
-      options:
-        - label: I have run `spack debug report` and reported the version of Spack/Python/Platform
-          required: true
-        - label: I have run `spack maintainers <name-of-the-package>` and **@mentioned** any maintainers
-          required: true
-        - label: I have uploaded the build log and environment files
-          required: true
-        - label: I have searched the issues of this repo and believe this is not a duplicate
-          required: true

.github/ISSUE_TEMPLATE/config.yml

@@ -1 +0,0 @@
-blank_issues_enabled: true

.github/ISSUE_TEMPLATE/feature_request.yml

@@ -1,41 +0,0 @@
-name: "\U0001F38A Feature request" 
-description: Suggest adding a feature that is not yet in Spack
-labels: [feature]
-body:
-  - type: textarea
-    id: summary
-    attributes:
-      label: Summary
-      description: Please add a concise summary of your suggestion here.
-    validations:
-      required: true
-  - type: textarea
-    id: rationale
-    attributes:
-      label: Rationale
-      description: Is your feature request related to a problem? Please describe it!
-  - type: textarea
-    id: description
-    attributes:
-      label: Description
-      description: Describe the solution you'd like and the alternatives you have considered.
-  - type: textarea
-    id: additional_information
-    attributes:
-      label: Additional information
-      description: Add any other context about the feature request here.
-  - type: checkboxes
-    id: checks
-    attributes:
-      label: General information
-      options:
-        - label: I have run `spack --version` and reported the version of Spack
-          required: true
-        - label: I have searched the issues of this repo and believe this is not a duplicate
-          required: true
-  - type: markdown
-    attributes:
-      value: |
-        If you want to ask a question about the tool (how to use it, what it can currently do, etc.), try the `#general` channel on [our Slack](https://slack.spack.io/) first. We have a welcoming community and chances are you'll get your reply faster and without opening an issue.
-        
-        Other than that, thanks for taking the time to contribute to Spack!

.github/dependabot.yml

@@ -1,7 +0,0 @@
-version: 2
-updates:
-  # Maintain dependencies for GitHub Actions
-  - package-ecosystem: "github-actions"
-    directory: "/"
-    schedule:
-      interval: "daily"

.github/workflows/bootstrap.yml

@@ -1,161 +0,0 @@
-name: Bootstrapping
-
-on:
-  pull_request:
-    branches:
-      - develop
-      - releases/**
-    paths-ignore:
-      # Don't run if we only modified packages in the
-      # built-in repository or documentation
-      - 'var/spack/repos/builtin/**'
-      - '!var/spack/repos/builtin/packages/clingo-bootstrap/**'
-      - '!var/spack/repos/builtin/packages/python/**'
-      - '!var/spack/repos/builtin/packages/re2c/**'
-      - 'lib/spack/docs/**'
-  schedule:
-    # nightly at 2:16 AM
-    - cron: '16 2 * * *'
-
-jobs:
-
-  fedora-sources:
-    runs-on: ubuntu-latest
-    container: "fedora:latest"
-    steps:
-      - name: Install dependencies
-        run: |
-          dnf install -y \
-              bzip2 curl file gcc-c++ gcc gcc-gfortran git gnupg2 gzip \
-              make patch unzip which xz python3 python3-devel tree \
-              cmake bison bison-devel libstdc++-static
-      - uses: actions/checkout@ec3a7ce113134d7a93b817d10a8272cb61118579 # @v2
-      - name: Setup repo and non-root user
-        run: |
-          git --version
-          git fetch --unshallow
-          . .github/workflows/setup_git.sh
-          useradd spack-test
-          chown -R spack-test .
-      - name: Bootstrap clingo
-        shell: runuser -u spack-test -- bash {0}
-        run: |
-          source share/spack/setup-env.sh
-          spack bootstrap untrust github-actions
-          spack external find cmake bison
-          spack -d solve zlib
-          tree ~/.spack/bootstrap/store/
-
-  ubuntu-sources:
-    runs-on: ubuntu-latest
-    container: "ubuntu:latest"
-    steps:
-      - name: Install dependencies
-        env:
-          DEBIAN_FRONTEND: noninteractive
-        run: |
-          apt-get update -y && apt-get upgrade -y
-          apt-get install -y \
-              bzip2 curl file g++ gcc gfortran git gnupg2 gzip \
-              make patch unzip xz-utils python3 python3-dev tree \
-              cmake bison
-      - uses: actions/checkout@ec3a7ce113134d7a93b817d10a8272cb61118579 # @v2
-      - name: Setup repo and non-root user
-        run: |
-          git --version
-          git fetch --unshallow
-          . .github/workflows/setup_git.sh
-          useradd -m spack-test
-          chown -R spack-test .
-      - name: Bootstrap clingo
-        shell: runuser -u spack-test -- bash {0}
-        run: |
-          source share/spack/setup-env.sh
-          spack bootstrap untrust github-actions
-          spack external find cmake bison
-          spack -d solve zlib
-          tree ~/.spack/bootstrap/store/
-
-  opensuse-sources:
-    runs-on: ubuntu-latest
-    container: "opensuse/leap:latest"
-    steps:
-      - name: Install dependencies
-        run: |
-          zypper update -y
-          zypper install -y \
-              bzip2 curl file gcc-c++ gcc gcc-fortran tar git gpg2 gzip \
-              make patch unzip which xz python3 python3-devel tree \
-              cmake bison
-      - uses: actions/checkout@ec3a7ce113134d7a93b817d10a8272cb61118579 # @v2
-      - name: Setup repo and non-root user
-        run: |
-          git --version
-          git fetch --unshallow
-          . .github/workflows/setup_git.sh
-      - name: Bootstrap clingo
-        run: |
-          source share/spack/setup-env.sh
-          spack bootstrap untrust github-actions
-          spack external find cmake bison
-          spack -d solve zlib
-          tree ~/.spack/bootstrap/store/
-
-  macos-sources:
-    runs-on: macos-latest
-    steps:
-      - name: Install dependencies
-        run: |
-          brew install cmake bison@2.7 tree
-      - uses: actions/checkout@ec3a7ce113134d7a93b817d10a8272cb61118579 # @v2
-      - name: Bootstrap clingo
-        run: |
-          source share/spack/setup-env.sh
-          export PATH=/usr/local/opt/bison@2.7/bin:$PATH
-          spack bootstrap untrust github-actions
-          spack external find --not-buildable cmake bison
-          spack -d solve zlib
-          tree ~/.spack/bootstrap/store/
-
-  macos-clingo-binaries:
-    runs-on: macos-latest
-    strategy:
-      matrix:
-        python-version: ['3.5', '3.6', '3.7', '3.8', '3.9']
-    steps:
-      - name: Install dependencies
-        run: |
-          brew install tree
-      - uses: actions/checkout@ec3a7ce113134d7a93b817d10a8272cb61118579 # @v2
-      - uses: actions/setup-python@dc73133d4da04e56a135ae2246682783cc7c7cb6 # @v2
-        with:
-          python-version: ${{ matrix.python-version }}
-      - name: Bootstrap clingo
-        run: |
-          source share/spack/setup-env.sh
-          spack bootstrap untrust spack-install
-          spack -d solve zlib
-          tree ~/.spack/bootstrap/store/
-
-
-  ubuntu-clingo-binaries:
-    runs-on: ubuntu-latest
-    strategy:
-      matrix:
-        python-version: ['2.7', '3.5', '3.6', '3.7', '3.8', '3.9']
-    steps:
-      - uses: actions/checkout@ec3a7ce113134d7a93b817d10a8272cb61118579 # @v2
-      - uses: actions/setup-python@dc73133d4da04e56a135ae2246682783cc7c7cb6 # @v2
-        with:
-          python-version: ${{ matrix.python-version }}
-      - name: Setup repo and non-root user
-        run: |
-          git --version
-          git fetch --unshallow
-          . .github/workflows/setup_git.sh
-      - name: Bootstrap clingo
-        run: |
-          source share/spack/setup-env.sh
-          spack bootstrap untrust spack-install
-          spack -d solve zlib
-          tree ~/.spack/bootstrap/store/

.github/workflows/build-containers.yml

@@ -1,91 +0,0 @@
-name: Containers
-
-on:
-  # This Workflow can be triggered manually
-  workflow_dispatch:
-  # Build new Spack develop containers nightly.
-  schedule:
-    - cron: '34 0 * * *'
-  # Run on pull requests that modify this file
-  pull_request:
-    branches:
-      - develop
-    paths:
-      - '.github/workflows/build-containers.yml'
-  # Let's also build & tag Spack containers on releases.
-  release:
-    types: [published]
-
-jobs:
-  deploy-images:
-    runs-on: ubuntu-latest
-    permissions:
-      packages: write
-    strategy:
-      # Even if one container fails to build we still want the others
-      # to continue their builds.
-      fail-fast: false
-      # A matrix of Dockerfile paths, associated tags, and which architectures
-      # they support.
-      matrix:
-        dockerfile: [[amazon-linux, amazonlinux-2.dockerfile, 'linux/amd64,linux/arm64'],
-                     [centos7, centos-7.dockerfile, 'linux/amd64,linux/arm64,linux/ppc64le'],
-                     [leap15, leap-15.dockerfile, 'linux/amd64,linux/arm64,linux/ppc64le'],
-                     [ubuntu-xenial, ubuntu-1604.dockerfile, 'linux/amd64,linux/arm64,linux/ppc64le'],
-                     [ubuntu-bionic, ubuntu-1804.dockerfile, 'linux/amd64,linux/arm64,linux/ppc64le']]
-    name: Build ${{ matrix.dockerfile[0] }}
-    steps:
-      - name: Checkout
-        uses: actions/checkout@ec3a7ce113134d7a93b817d10a8272cb61118579 # @v2
-
-      - name: Set Container Tag Normal (Nightly)
-        run: |
-          container="${{ matrix.dockerfile[0] }}:latest"
-          echo "container=${container}" >> $GITHUB_ENV
-          echo "versioned=${container}" >> $GITHUB_ENV
-
-        # On a new release create a container with the same tag as the release.
-      - name: Set Container Tag on Release
-        if: github.event_name == 'release'
-        run: |
-          versioned="${{matrix.dockerfile[0]}}:${GITHUB_REF##*/}"
-          echo "versioned=${versioned}" >> $GITHUB_ENV
-
-      - name: Check ${{ matrix.dockerfile[1] }} Exists
-        run: |
-          printf "Preparing to build ${{ env.container }} from ${{ matrix.dockerfile[1] }}"
-          if [ ! -f "share/spack/docker/${{ matrix.dockerfile[1]}}" ]; then
-              printf "Dockerfile ${{ matrix.dockerfile[0]}} does not exist"
-              exit 1;
-          fi
-
-      - name: Set up QEMU
-        uses: docker/setup-qemu-action@27d0a4f181a40b142cce983c5393082c365d1480 # @v1
-
-      - name: Set up Docker Buildx
-        uses: docker/setup-buildx-action@94ab11c41e45d028884a99163086648e898eed25 # @v1
-
-      - name: Log in to GitHub Container Registry
-        uses: docker/login-action@f054a8b539a109f9f41c372932f1ae047eff08c9 # @v1
-        with:
-          registry: ghcr.io
-          username: ${{ github.actor }}
-          password: ${{ secrets.GITHUB_TOKEN }}
-
-      - name: Log in to DockerHub
-        uses: docker/login-action@f054a8b539a109f9f41c372932f1ae047eff08c9 # @v1
-        with:
-          username: ${{ secrets.DOCKERHUB_USERNAME }}
-          password: ${{ secrets.DOCKERHUB_TOKEN }}
-
-      - name: Build & Deploy ${{ matrix.dockerfile[1] }}
-        uses: docker/build-push-action@a66e35b9cbcf4ad0ea91ffcaf7bbad63ad9e0229 # @v2
-        with:
-          file: share/spack/docker/${{matrix.dockerfile[1]}}
-          platforms: ${{ matrix.dockerfile[2] }}
-          push: ${{ github.event_name != 'pull_request' }}
-          tags: |
-            spack/${{ env.container }}
-            spack/${{ env.versioned }}
-            ghcr.io/spack/${{ env.container }}
-            ghcr.io/spack/${{ env.versioned }}

.github/workflows/install_spack.sh

@@ -1,20 +0,0 @@
-#!/usr/bin/env sh
-. share/spack/setup-env.sh
-echo -e "config:\n  build_jobs: 2" > etc/spack/config.yaml
-spack config add "packages:all:target:[x86_64]"
-# TODO: remove this explicit setting once apple-clang detection is fixed
-cat <<EOF > etc/spack/compilers.yaml
-compilers:
-- compiler:
-    spec: apple-clang@11.0.3
-    paths:
-      cc: /usr/bin/clang
-      cxx: /usr/bin/clang++
-      f77: /usr/local/bin/gfortran-9
-      fc: /usr/local/bin/gfortran-9
-    modules: []
-    operating_system: catalina
-    target: x86_64
-EOF
-spack compiler info apple-clang
-spack debug report

.github/workflows/macos_python.yml

@@ -1,64 +0,0 @@
-# These are nightly package tests for macOS
-# focus areas:
-# - initial user experience
-# - scientific python stack
-name: macOS builds nightly
-
-on:
-  schedule:
-    # nightly at 1 AM
-    - cron: '0 1 * * *'
-  pull_request:
-    branches:
-    - develop
-    paths:
-      # Run if we modify this yaml file
-      - '.github/workflows/macos_python.yml'
-      # TODO: run if we touch any of the recipes involved in this
-
-# GitHub Action Limits
-# https://help.github.com/en/actions/reference/workflow-syntax-for-github-actions
-
-jobs:
-  install_gcc:
-    name: gcc with clang
-    runs-on: macos-latest
-    steps:
-    - uses: actions/checkout@ec3a7ce113134d7a93b817d10a8272cb61118579 # @v2
-    - uses: actions/setup-python@dc73133d4da04e56a135ae2246682783cc7c7cb6 # @v2
-      with:
-        python-version: 3.9
-    - name: spack install
-      run: |
-        . .github/workflows/install_spack.sh
-        # 9.2.0 is the latest version on which we apply homebrew patch
-        spack install -v --fail-fast gcc@9.2.0 %apple-clang
-
-  install_jupyter_clang:
-    name: jupyter
-    runs-on: macos-latest
-    timeout-minutes: 700
-    steps:
-    - uses: actions/checkout@ec3a7ce113134d7a93b817d10a8272cb61118579 # @v2
-    - uses: actions/setup-python@dc73133d4da04e56a135ae2246682783cc7c7cb6 # @v2
-      with:
-        python-version: 3.9
-    - name: spack install
-      run: |
-        . .github/workflows/install_spack.sh
-        spack install -v --fail-fast py-jupyterlab %apple-clang
-
-  install_scipy_clang:
-    name: scipy, mpl, pd
-    runs-on: macos-latest
-    steps:
-    - uses: actions/checkout@ec3a7ce113134d7a93b817d10a8272cb61118579 # @v2
-    - uses: actions/setup-python@dc73133d4da04e56a135ae2246682783cc7c7cb6 # @v2
-      with:
-        python-version: 3.9
-    - name: spack install
-      run: |
-        . .github/workflows/install_spack.sh
-        spack install -v --fail-fast py-scipy %apple-clang
-        spack install -v --fail-fast py-matplotlib %apple-clang
-        spack install -v --fail-fast py-pandas %apple-clang

.github/workflows/setup_git.sh

@@ -1,9 +0,0 @@
-#!/usr/bin/env sh
-git config --global user.email "spack@example.com"
-git config --global user.name "Test User"
-# With fetch-depth: 0 we have a remote develop
-# but not a local branch. Don't do this on develop
-if [ "$(git branch --show-current)" != "develop" ]
-then
-  git branch develop origin/develop
-fi

.github/workflows/unit_tests.yaml

@@ -1,347 +0,0 @@
-name: linux tests
-
-on:
-  push:
-    branches:
-      - develop
-      - releases/**
-  pull_request:
-    branches:
-      - develop
-      - releases/**
-jobs:
-  # Validate that the code can be run on all the Python versions
-  # supported by Spack
-  validate:
-    runs-on: ubuntu-latest
-    steps:
-    - uses: actions/checkout@ec3a7ce113134d7a93b817d10a8272cb61118579 # @v2
-    - uses: actions/setup-python@dc73133d4da04e56a135ae2246682783cc7c7cb6 # @v2
-      with:
-        python-version: 3.9
-    - name: Install Python Packages
-      run: |
-        pip install --upgrade pip
-        pip install --upgrade vermin
-    - name: vermin (Spack's Core)
-      run: vermin --backport argparse --violations --backport typing -t=2.6- -t=3.5- -vvv lib/spack/spack/ lib/spack/llnl/ bin/
-    - name: vermin (Repositories)
-      run: vermin --backport argparse --violations --backport typing -t=2.6- -t=3.5- -vvv var/spack/repos
-  # Run style checks on the files that have been changed
-  style:
-    runs-on: ubuntu-latest
-    steps:
-    - uses: actions/checkout@ec3a7ce113134d7a93b817d10a8272cb61118579 # @v2
-      with:
-        fetch-depth: 0
-    - uses: actions/setup-python@dc73133d4da04e56a135ae2246682783cc7c7cb6 # @v2
-      with:
-        python-version: 3.9
-    - name: Install Python packages
-      run: |
-        pip install --upgrade pip six setuptools types-six
-    - name: Setup git configuration
-      run: |
-        # Need this for the git tests to succeed.
-        git --version
-        . .github/workflows/setup_git.sh
-    - name: Run style tests
-      run: |
-          share/spack/qa/run-style-tests
-  # Check which files have been updated by the PR
-  changes:
-    runs-on: ubuntu-latest
-    # Set job outputs to values from filter step
-    outputs:
-      core: ${{ steps.filter.outputs.core }}
-      packages: ${{ steps.filter.outputs.packages }}
-      with_coverage: ${{ steps.coverage.outputs.with_coverage }}
-    steps:
-    - uses: actions/checkout@ec3a7ce113134d7a93b817d10a8272cb61118579 # @v2
-      if: ${{ github.event_name == 'push' }}
-      with:
-        fetch-depth: 0
-    # For pull requests it's not necessary to checkout the code
-    - uses: dorny/paths-filter@b2feaf19c27470162a626bd6fa8438ae5b263721
-      id: filter
-      with:
-        # See https://github.com/dorny/paths-filter/issues/56 for the syntax used below
-        filters: |
-          core:
-          - './!(var/**)/**'
-          packages:
-          - 'var/**'
-    # Some links for easier reference:
-    #
-    # "github" context: https://docs.github.com/en/actions/reference/context-and-expression-syntax-for-github-actions#github-context
-    # job outputs: https://docs.github.com/en/actions/reference/workflow-syntax-for-github-actions#jobsjob_idoutputs
-    # setting environment variables from earlier steps: https://docs.github.com/en/actions/reference/workflow-commands-for-github-actions#setting-an-environment-variable
-    #
-    - id: coverage
-      # Run the subsequent jobs with coverage if core has been modified,
-      # regardless of whether this is a pull request or a push to a branch
-      run: |
-        echo Core changes: ${{ steps.filter.outputs.core }}
-        echo Event name: ${{ github.event_name }}
-        if [ "${{ steps.filter.outputs.core }}" == "true" ]
-        then
-          echo "::set-output name=with_coverage::true"
-        else
-          echo "::set-output name=with_coverage::false"
-        fi
-
-  # Run unit tests with different configurations on linux
-  unittests:
-    needs: [ validate, style, changes ]
-    runs-on: ubuntu-latest
-    strategy:
-      matrix:
-        python-version: [2.7, 3.5, 3.6, 3.7, 3.8, 3.9]
-        concretizer: ['original', 'clingo']
-    steps:
-    - uses: actions/checkout@ec3a7ce113134d7a93b817d10a8272cb61118579 # @v2
-      with:
-        fetch-depth: 0
-    - uses: actions/setup-python@dc73133d4da04e56a135ae2246682783cc7c7cb6 # @v2
-      with:
-        python-version: ${{ matrix.python-version }}
-    - name: Install System packages
-      run: |
-          sudo apt-get -y update
-          # Needed for unit tests
-          sudo apt-get -y install \
-              coreutils cvs gfortran graphviz gnupg2 mercurial ninja-build \
-              patchelf cmake bison libbison-dev kcov
-    - name: Install Python packages
-      run: |
-          pip install --upgrade pip six setuptools codecov coverage[toml]
-          # ensure style checks are not skipped in unit tests for python >= 3.6
-          # note that true/false (i.e., 1/0) are opposite in conditions in python and bash
-          if python -c 'import sys; sys.exit(not sys.version_info >= (3, 6))'; then
-              pip install --upgrade flake8 isort>=4.3.5 mypy>=0.900 black
-          fi
-    - name: Setup git configuration
-      run: |
-          # Need this for the git tests to succeed.
-          git --version
-          . .github/workflows/setup_git.sh
-    - name: Bootstrap clingo
-      if: ${{ matrix.concretizer == 'clingo' }}
-      env:
-          SPACK_PYTHON: python
-      run: |
-          . share/spack/setup-env.sh
-          spack bootstrap untrust spack-install
-          spack -v solve zlib
-    - name: Run unit tests (full suite with coverage)
-      if: ${{ needs.changes.outputs.with_coverage == 'true' }}
-      env:
-          SPACK_PYTHON: python
-          COVERAGE: true
-          SPACK_TEST_SOLVER: ${{ matrix.concretizer }}
-      run: |
-          share/spack/qa/run-unit-tests
-          coverage combine
-          coverage xml
-    - name: Run unit tests (reduced suite without coverage)
-      if: ${{ needs.changes.outputs.with_coverage == 'false' }}
-      env:
-          SPACK_PYTHON: python
-          ONLY_PACKAGES: true
-          SPACK_TEST_SOLVER: ${{ matrix.concretizer }}
-      run: |
-          share/spack/qa/run-unit-tests
-    - uses: codecov/codecov-action@f32b3a3741e1053eb607407145bc9619351dc93b # @v2.1.0
-      if: ${{ needs.changes.outputs.with_coverage == 'true' }}
-      with:
-        flags: unittests,linux,${{ matrix.concretizer }}
-  # Test shell integration
-  shell:
-    needs: [ validate, style, changes ]
-    runs-on: ubuntu-latest
-    steps:
-    - uses: actions/checkout@ec3a7ce113134d7a93b817d10a8272cb61118579 # @v2
-      with:
-        fetch-depth: 0
-    - uses: actions/setup-python@dc73133d4da04e56a135ae2246682783cc7c7cb6 # @v2
-      with:
-        python-version: 3.9
-    - name: Install System packages
-      run: |
-          sudo apt-get -y update
-          # Needed for shell tests
-          sudo apt-get install -y coreutils kcov csh zsh tcsh fish dash bash
-    - name: Install Python packages
-      run: |
-          pip install --upgrade pip six setuptools codecov coverage[toml]
-    - name: Setup git configuration
-      run: |
-          # Need this for the git tests to succeed.
-          git --version
-          . .github/workflows/setup_git.sh
-    - name: Run shell tests (without coverage)
-      if: ${{ needs.changes.outputs.with_coverage == 'false' }}
-      run: |
-          share/spack/qa/run-shell-tests
-    - name: Run shell tests (with coverage)
-      if: ${{ needs.changes.outputs.with_coverage == 'true' }}
-      env:
-          COVERAGE: true
-      run: |
-          share/spack/qa/run-shell-tests
-    - uses: codecov/codecov-action@f32b3a3741e1053eb607407145bc9619351dc93b # @v2.1.0
-      if: ${{ needs.changes.outputs.with_coverage == 'true' }}
-      with:
-        flags: shelltests,linux
-  # Test for Python2.6 run on Centos 6
-  centos6:
-    needs: [ validate, style, changes ]
-    runs-on: ubuntu-latest
-    container: spack/github-actions:centos6
-    steps:
-    - name: Run unit tests (full test-suite)
-      # The CentOS 6 container doesn't run with coverage, but
-      # under the same conditions it runs the full test suite
-      if: ${{ needs.changes.outputs.with_coverage == 'true' }}
-      env:
-          HOME: /home/spack-test
-          SPACK_TEST_SOLVER: original
-      run: |
-          whoami && echo $HOME && cd $HOME
-          git clone "${{ github.server_url }}/${{ github.repository }}.git" && cd spack
-          git fetch origin "${{ github.ref }}:test-branch"
-          git checkout test-branch
-          bin/spack unit-test -x
-    - name: Run unit tests (only package tests)
-      if: ${{ needs.changes.outputs.with_coverage == 'false' }}
-      env:
-          HOME: /home/spack-test
-          ONLY_PACKAGES: true
-          SPACK_TEST_SOLVER: original
-      run: |
-          whoami && echo $HOME && cd $HOME
-          git clone "${{ github.server_url }}/${{ github.repository }}.git" && cd spack
-          git fetch origin "${{ github.ref }}:test-branch"
-          git checkout test-branch
-          bin/spack unit-test -x -m "not maybeslow" -k "package_sanity"
-
-  # Test RHEL8 UBI with platform Python. This job is run
-  # only on PRs modifying core Spack
-  rhel8-platform-python:
-    needs: [ validate, style, changes ]
-    runs-on: ubuntu-latest
-    if: ${{ needs.changes.outputs.with_coverage == 'true' }}
-    container: registry.access.redhat.com/ubi8/ubi
-    steps:
-    - name: Install dependencies
-      run: |
-          dnf install -y \
-              bzip2 curl file gcc-c++ gcc gcc-gfortran git gnupg2 gzip \
-              make patch tcl unzip which xz
-    - uses: actions/checkout@ec3a7ce113134d7a93b817d10a8272cb61118579 # @v2
-    - name: Setup repo and non-root user
-      run: |
-          git --version
-          git fetch --unshallow
-          . .github/workflows/setup_git.sh
-          useradd spack-test
-          chown -R spack-test .
-    - name: Run unit tests
-      shell: runuser -u spack-test -- bash {0}
-      run: |
-          source share/spack/setup-env.sh
-          spack -d solve zlib
-          spack unit-test -k 'not cvs and not svn and not hg' -x --verbose
-  # Test for the clingo based solver (using clingo-cffi)
-  clingo-cffi:
-    needs: [ validate, style, changes ]
-    runs-on: ubuntu-latest
-    steps:
-    - uses: actions/checkout@ec3a7ce113134d7a93b817d10a8272cb61118579 # @v2
-      with:
-        fetch-depth: 0
-    - uses: actions/setup-python@dc73133d4da04e56a135ae2246682783cc7c7cb6 # @v2
-      with:
-        python-version: 3.9
-    - name: Install System packages
-      run: |
-          sudo apt-get -y update
-          # Needed for unit tests
-          sudo apt-get -y install \
-              coreutils cvs gfortran graphviz gnupg2 mercurial ninja-build \
-              patchelf kcov
-    - name: Install Python packages
-      run: |
-          pip install --upgrade pip six setuptools codecov coverage[toml] clingo
-    - name: Setup git configuration
-      run: |
-          # Need this for the git tests to succeed.
-          git --version
-          . .github/workflows/setup_git.sh
-    - name: Run unit tests (full suite with coverage)
-      if: ${{ needs.changes.outputs.with_coverage == 'true' }}
-      env:
-          COVERAGE: true
-          SPACK_TEST_SOLVER: clingo
-      run: |
-          share/spack/qa/run-unit-tests
-          coverage combine
-          coverage xml
-    - name: Run unit tests (reduced suite without coverage)
-      if: ${{ needs.changes.outputs.with_coverage == 'false' }}
-      env:
-          ONLY_PACKAGES: true
-          SPACK_TEST_SOLVER: clingo
-      run: |
-          share/spack/qa/run-unit-tests
-    - uses: codecov/codecov-action@f32b3a3741e1053eb607407145bc9619351dc93b # @v2.1.0
-      if: ${{ needs.changes.outputs.with_coverage == 'true' }}
-      with:
-        flags: unittests,linux,clingo
-  # Run unit tests on MacOS
-  build:
-    needs: [ validate, style, changes ]
-    runs-on: macos-latest
-    strategy:
-      matrix:
-        python-version: [3.8]
-    steps:
-    - uses: actions/checkout@ec3a7ce113134d7a93b817d10a8272cb61118579 # @v2
-      with:
-        fetch-depth: 0
-    - uses: actions/setup-python@dc73133d4da04e56a135ae2246682783cc7c7cb6 # @v2
-      with:
-        python-version: ${{ matrix.python-version }}
-    - name: Install Python packages
-      run: |
-          pip install --upgrade pip six setuptools
-          pip install --upgrade codecov coverage[toml]
-    - name: Setup Homebrew packages
-      run: |
-        brew install dash fish gcc gnupg2 kcov
-    - name: Run unit tests
-      env:
-        SPACK_TEST_SOLVER: clingo
-      run: |
-        git --version
-        . .github/workflows/setup_git.sh
-        . share/spack/setup-env.sh
-        $(which spack) bootstrap untrust spack-install
-        $(which spack) solve zlib
-        if [ "${{ needs.changes.outputs.with_coverage }}" == "true" ]
-        then
-          coverage run $(which spack) unit-test -x
-          coverage combine
-          coverage xml
-          # Delete the symlink going from ./lib/spack/docs/_spack_root back to
-          # the initial directory, since it causes ELOOP errors with codecov/actions@2
-          rm lib/spack/docs/_spack_root
-        else
-          echo "ONLY PACKAGE RECIPES CHANGED [skipping coverage]"
-          $(which spack) unit-test -x -m "not maybeslow" -k "package_sanity"
-        fi
-    - uses: codecov/codecov-action@f32b3a3741e1053eb607407145bc9619351dc93b # @v2.1.0
-      if: ${{ needs.changes.outputs.with_coverage == 'true' }}
-      with:
-        files: ./coverage.xml
-        flags: unittests,macos

.gitignore

@@ -1,515 +1,13 @@
-##########################
-# Spack-specific ignores #
-##########################
-
 /var/spack/stage
-/var/spack/cache
-/var/spack/environments
-/var/spack/repos/*/index.yaml
-/var/spack/repos/*/lock
-/opt
-# Ignore everything in /etc/spack except /etc/spack/defaults
-/etc/spack/*
-!/etc/spack/defaults
-/share/spack/modules
-/share/spack/lmod
-# Debug logs
-spack-db.*
-*.in.log
-*.out.log
-
-###########################
-# Python-specific ignores #
-###########################
-
-# Byte-compiled / optimized / DLL files
-__pycache__/
-*.py[cod]
-*$py.class
-
-# C extensions
-*.so
-
-# Distribution / packaging
-.Python
-build/
-develop-eggs/
-dist/
-downloads/
-eggs/
-.eggs/
-#lib/
-#lib64/
-parts/
-sdist/
-#var/
-wheels/
-share/python-wheels/
-*.egg-info/
-.installed.cfg
-*.egg
-MANIFEST
-
-# PyInstaller
-#  Usually these files are written by a python script from a template
-#  before PyInstaller builds the exe, so as to inject date/other infos into it.
-*.manifest
-*.spec
-
-# Installer logs
-pip-log.txt
-pip-delete-this-directory.txt
-
-# Unit test / coverage reports
-htmlcov/
-.tox/
-.nox/
-.coverage
-.coverage.*
-.cache
-nosetests.xml
-coverage.xml
-*.cover
-*.py,cover
-.hypothesis/
-.pytest_cache/
-cover/
-
-# Translations
-*.mo
-*.pot
-
-# Django stuff:
-*.log
-local_settings.py
-db.sqlite3
-db.sqlite3-journal
-
-# Flask stuff:
-instance/
-.webassets-cache
-
-# Scrapy stuff:
-.scrapy
-
-# Sphinx documentation
-docs/_build/
-
-# PyBuilder
-.pybuilder/
-target/
-
-# Jupyter Notebook
-.ipynb_checkpoints
-
-# IPython
-profile_default/
-ipython_config.py
-
-# pyenv
-#   For a library or package, you might want to ignore these files since the code is
-#   intended to run in multiple environments; otherwise, check them in:
-# .python-version
-
-# pipenv
-#   According to pypa/pipenv#598, it is recommended to include Pipfile.lock in version control.
-#   However, in case of collaboration, if having platform-specific dependencies or dependencies
-#   having no cross-platform support, pipenv may install dependencies that don't work, or not
-#   install all needed dependencies.
-#Pipfile.lock
-
-# PEP 582; used by e.g. github.com/David-OConnor/pyflow
-__pypackages__/
-
-# Celery stuff
-celerybeat-schedule
-celerybeat.pid
-
-# SageMath parsed files
-*.sage.py
-
-# Environments
-.env
-.venv
-env/
-venv/
-ENV/
-env.bak/
-venv.bak/
-!/lib/spack/env
-
-# Spyder project settings
-.spyderproject
-.spyproject
-
-# Rope project settings
-.ropeproject
-
-# mkdocs documentation
-/site
-
-# mypy
-.mypy_cache/
-.dmypy.json
-dmypy.json
-
-# Pyre type checker
-.pyre/
-
-# pytype static type analyzer
-.pytype/
-
-# Cython debug symbols
-cython_debug/
-
-########################
-# Vim-specific ignores #
-########################
-
-# Swap
-[._]*.s[a-v][a-z]
-!*.svg  # comment out if you don't need vector files
-[._]*.sw[a-p]
-[._]s[a-rt-v][a-z]
-[._]ss[a-gi-z]
-[._]sw[a-p]
-
-# Session
-Session.vim
-Sessionx.vim
-
-# Temporary
-.netrwhist
+*.pyc
+/opt/
 *~
-# Auto-generated tag files
-tags
-# Persistent undo
-[._]*.un~
-
-##########################
-# Emacs-specific ignores #
-##########################
-
-*~
-\#*\#
-/.emacs.desktop
-/.emacs.desktop.lock
-*.elc
-auto-save-list
-tramp
-.\#*
-
-# Org-mode
-.org-id-locations
-*_archive
-
-# flymake-mode
-*_flymake.*
-
-# eshell files
-/eshell/history
-/eshell/lastdir
-
-# zsh byte-compiled files
-*.zwc
-
-# elpa packages
-/elpa/
-
-# reftex files
-*.rel
-
-# AUCTeX auto folder
-/auto/
-
-# cask packages
-.cask/
-dist/
-
-# Flycheck
-flycheck_*.el
-
-# server auth directory
-/server/
-
-# projectiles files
-.projectile
-
-# directory configuration
-.dir-locals.el
-
-# network security
-/network-security.data
-
-############################
-# Eclipse-specific ignores #
-############################
-
-.metadata
-#bin/
-tmp/
-*.tmp
-*.bak
-*.swp
-*~.nib
-local.properties
-.settings/
-.loadpath
-.recommenders
-
-# External tool builders
-.externalToolBuilders/
-
-# Locally stored "Eclipse launch configurations"
-*.launch
-
-# PyDev specific (Python IDE for Eclipse)
-*.pydevproject
-
-# CDT-specific (C/C++ Development Tooling)
-.cproject
-
-# CDT- autotools
-.autotools
-
-# Java annotation processor (APT)
-.factorypath
-
-# PDT-specific (PHP Development Tools)
-.buildpath
-
-# sbteclipse plugin
-.target
-
-# Tern plugin
-.tern-project
-
-# TeXlipse plugin
-.texlipse
-
-# STS (Spring Tool Suite)
-.springBeans
-
-# Code Recommenders
-.recommenders/
-
-# Annotation Processing
-.apt_generated/
-.apt_generated_test/
-
-# Scala IDE specific (Scala & Java development for Eclipse)
-.cache-main
-.scala_dependencies
-.worksheet
-
-# Uncomment this line if you wish to ignore the project description file.
-# Typically, this file would be tracked if it contains build/dependency configurations:
-#.project
-
-##################################
-# Visual Studio-specific ignores #
-##################################
-
-.vscode/*
-!.vscode/settings.json
-!.vscode/tasks.json
-!.vscode/launch.json
-!.vscode/extensions.json
-*.code-workspace
-
-# Local History for Visual Studio Code
-.history/
-
-#################################
-# Sublime Text-specific ignores #
-#################################
-
-# Cache files for Sublime Text
-*.tmlanguage.cache
-*.tmPreferences.cache
-*.stTheme.cache
-
-# Workspace files are user-specific
-*.sublime-workspace
-
-# Project files should be checked into the repository, unless a significant
-# proportion of contributors will probably not be using Sublime Text
-# *.sublime-project
-
-# SFTP configuration file
-sftp-config.json
-sftp-config-alt*.json
-
-# Package control specific files
-Package Control.last-run
-Package Control.ca-list
-Package Control.ca-bundle
-Package Control.system-ca-bundle
-Package Control.cache/
-Package Control.ca-certs/
-Package Control.merged-ca-bundle
-Package Control.user-ca-bundle
-oscrypto-ca-bundle.crt
-bh_unicode_properties.cache
-
-# Sublime-github package stores a github token in this file
-# https://packagecontrol.io/packages/sublime-github
-GitHub.sublime-settings
-
-##############################
-# JetBrains-specific ignores #
-##############################
-
-# Ignore the entire folder since it may conatin more files than
-# just the ones listed below
-.idea/
-
-# Covers JetBrains IDEs: IntelliJ, RubyMine, PhpStorm, AppCode, PyCharm, CLion, Android Studio, WebStorm and Rider
-# Reference: https://intellij-support.jetbrains.com/hc/en-us/articles/206544839
-
-# User-specific stuff
-.idea/**/workspace.xml
-.idea/**/tasks.xml
-.idea/**/usage.statistics.xml
-.idea/**/dictionaries
-.idea/**/shelf
-
-# Generated files
-.idea/**/contentModel.xml
-
-# Sensitive or high-churn files
-.idea/**/dataSources/
-.idea/**/dataSources.ids
-.idea/**/dataSources.local.xml
-.idea/**/sqlDataSources.xml
-.idea/**/dynamic.xml
-.idea/**/uiDesigner.xml
-.idea/**/dbnavigator.xml
-
-# Gradle
-.idea/**/gradle.xml
-.idea/**/libraries
-
-# Gradle and Maven with auto-import
-# When using Gradle or Maven with auto-import, you should exclude module files,
-# since they will be recreated, and may cause churn.  Uncomment if using
-# auto-import.
-# .idea/artifacts
-# .idea/compiler.xml
-# .idea/jarRepositories.xml
-# .idea/modules.xml
-# .idea/*.iml
-# .idea/modules
-# *.iml
-# *.ipr
-
-# CMake
-cmake-build-*/
-
-# Mongo Explorer plugin
-.idea/**/mongoSettings.xml
-
-# File-based project format
-*.iws
-
-# IntelliJ
-out/
-
-# mpeltonen/sbt-idea plugin
-.idea_modules/
-
-# JIRA plugin
-atlassian-ide-plugin.xml
-
-# Cursive Clojure plugin
-.idea/replstate.xml
-
-# Crashlytics plugin (for Android Studio and IntelliJ)
-com_crashlytics_export_strings.xml
-crashlytics.properties
-crashlytics-build.properties
-fabric.properties
-
-# Editor-based Rest Client
-.idea/httpRequests
-
-# Android studio 3.1+ serialized cache file
-.idea/caches/build_file_checksums.ser
-
-##########################
-# macOS-specific ignores #
-##########################
-
-# General
 .DS_Store
-.AppleDouble
-.LSOverride
-
-# Icon must end with two \r
-Icon
-
-# Thumbnails
-._*
-
-# Files that might appear in the root of a volume
-.DocumentRevisions-V100
-.fseventsd
-.Spotlight-V100
-.TemporaryItems
-.Trashes
-.VolumeIcon.icns
-.com.apple.timemachine.donotpresent
-
-# Directories potentially created on remote AFP share
-.AppleDB
-.AppleDesktop
-Network Trash Folder
-Temporary Items
-.apdisk
-
-##########################
-# Linux-specific ignores #
-##########################
-
-*~
-
-# temporary files which can be created if a process still has a handle open of a deleted file
-.fuse_hidden*
-
-# KDE directory preferences
-.directory
-
-# Linux trash folder which might appear on any partition or disk
-.Trash-*
-
-# .nfs files are created when an open file is removed but is still being accessed
-.nfs*
-
-############################
-# Windows-specific ignores #
-############################
-
-# Windows thumbnail cache files
-Thumbs.db
-Thumbs.db:encryptable
-ehthumbs.db
-ehthumbs_vista.db
-
-# Dump file
-*.stackdump
-
-# Folder config file
-[Dd]esktop.ini
-
-# Recycle Bin used on file shares
-$RECYCLE.BIN/
-
-# Windows Installer files
-*.cab
-*.msi
-*.msix
-*.msm
-*.msp
-
-# Windows shortcuts
-*.lnk
+.idea
+/etc/spack/*
+/etc/spackconfig
+/share/spack/dotkit
+/share/spack/modules
+/TAGS
+/htmlcov
+.coverage

.mailmap

@@ -1,59 +1,20 @@
-Abhinav Bhatele       <bhatele@llnl.gov>                Abhinav Bhatele         <bhatele@gmail.com>
-Adam Moody            <moody20@llnl.gov>                Adam T. Moody           <moody20@llnl.gov>
-Alfredo Gimenez       <gimenez1@llnl.gov>               Alfredo Gimenez         <alfredo.gimenez@gmail.com>
-Alfredo Gimenez       <gimenez1@llnl.gov>               Alfredo Adolfo Gimenez  <alfredo.gimenez@gmail.com>
-Andrew Williams       <williamsa89@cardiff.ac.uk>       Andrew Williams         <andrew@alshain.org.uk>
-Axel Huebl            <axelhuebl@lbl.gov>               Axel Huebl              <a.huebl@hzdr.de>
-Axel Huebl            <axelhuebl@lbl.gov>               Axel Huebl              <axel.huebl@plasma.ninja>
-Ben Boeckel           <ben.boeckel@kitware.com>         Ben Boeckel             <mathstuf@gmail.com>
-Ben Boeckel           <ben.boeckel@kitware.com>         Ben Boeckel             <mathstuf@users.noreply.github.com>
-Benedikt Hegner       <hegner@cern.ch>                  Benedikt Hegner         <benedikt.hegner@cern.ch>
-Brett Viren           <bv@bnl.gov>                      Brett Viren             <brett.viren@gmail.com>
-David Boehme          <boehme3@llnl.gov>                David Boehme            <boehme3@sierra324.llnl.gov>
-David Boehme          <boehme3@llnl.gov>                David Boehme            <boehme3@sierra648.llnl.gov>
-David Poliakoff       <poliakoff1@llnl.gov>             David Poliakoff         <david.poliakoff@gmail.com>
-Dhanannjay Deo        <dhanannjay.deo@kitware.com>      Dhanannjay 'Djay' Deo   <dhanannjay.deo@kitware.com>
-Elizabeth Fischer     <elizabeth.fischer@columbia.edu>  Elizabeth F             <elizabeth.fischer@columbia.edu>
-Elizabeth Fischer     <elizabeth.fischer@columbia.edu>  Elizabeth F             <rpf2116@columbia.edu>
-Elizabeth Fischer     <elizabeth.fischer@columbia.edu>  Elizabeth Fischer       <rpf2116@columbia.edu>
-Elizabeth Fischer     <elizabeth.fischer@columbia.edu>  citibeth                <rpf2116@columbia.edu>
-Geoffrey Oxberry      <oxberry1@llnl.gov>               Geoffrey Oxberry        <goxberry@gmail.com>
-Glenn Johnson         <glenn-johnson@uiowa.edu>         Glenn Johnson           <gjohnson@argon-ohpc.hpc.uiowa.edu>
-Glenn Johnson         <glenn-johnson@uiowa.edu>         Glenn Johnson           <glennpj@gmail.com>
-Gregory Becker        <becker33@llnl.gov>               Gregory Becker          <becker33.llnl.gov>
-Gregory Becker        <becker33@llnl.gov>               Gregory Becker          <becker33.llnl.gov>
-Gregory Becker        <becker33@llnl.gov>               Gregory Becker          <becker33@llnl.gov>
-Gregory L. Lee        <lee218@llnl.gov>                 Greg Lee                <lee218@llnl.gov>
-Gregory L. Lee        <lee218@llnl.gov>                 Gregory L. Lee          <lee218@cab687.llnl.gov>
-Gregory L. Lee        <lee218@llnl.gov>                 Gregory L. Lee          <lee218@cab690.llnl.gov>
-Gregory L. Lee        <lee218@llnl.gov>                 Gregory L. Lee          <lee218@catalyst159.llnl.gov>
-Gregory L. Lee        <lee218@llnl.gov>                 Gregory L. Lee          <lee218@surface86.llnl.gov>
-Gregory L. Lee        <lee218@llnl.gov>                 Gregory Lee             <lee218@llnl.gov>
-Ian Lee               <lee1001@llnl.gov>                Ian Lee                 <IanLee1521@gmail.com>
-James Wynne III       <wynnejr@ornl.gov>                James Riley Wynne III   <wynnejr@ornl.gov>
-James Wynne III       <wynnejr@ornl.gov>                James Wynne III         <wynnejr@gpujake.com>
-Joachim Protze        <protze@rz.rwth-aachen.de>        jprotze                 <protze@rz.rwth-aachen.de>
-Kelly (KT) Thompson   <kgt@lanl.gov>                                            <kellyt@MENE.localdomain>
-Kelly (KT) Thompson   <kgt@lanl.gov>                    Kelly Thompson          <KineticTheory@users.noreply.github.com>
-Kevin Brandstatter    <kjbrandstatter@gmail.com>        Kevin Brandstatter      <kbrandst@hawk.iit.edu>
-Luc Jaulmes           <luc.jaulmes@bsc.es>              Luc Jaulmes             <jaulmes1@llnl.gov>
-Mario Melara          <maamelara@gmail.com>             Mario Melara            <mamelara@genepool1.nersc.gov>
-Mark Miller           <miller86@llnl.gov>               miller86                <miller86@llnl.gov>
-Massimiliano Culpo    <massimiliano.culpo@epfl.ch>      Massimiliano Culpo      <massimiliano.culpo@googlemail.com>
-Massimiliano Culpo    <massimiliano.culpo@epfl.ch>      alalazo                 <massimiliano.culpo@googlemail.com>
-Mayeul d'Avezac       <m.davezac@ucl.ac.uk>             Mayeul d'Avezac         <mdavezac@gmail.com>
-Mitchell Devlin       <mitchell.r.devlin@gmail.com>     Mitchell Devlin         <devlin@blogin4.lcrc.anl.gov>
-Nicolas Richart       <nicolas.richart@epfl.ch>         Nicolas                 <nrichart@users.noreply.github.com>
-Nicolas Richart       <nicolas.richart@epfl.ch>         Nicolas Richart         <nrichart@users.noreply.github.com>
-Peter Scheibel        <scheibel1@llnl.gov>              scheibelp               <scheibel1@llnl.gov>
-Robert D. French      <frenchrd@ornl.gov>               Robert D. French        <robert@robertdfrench.me>
-Robert D. French      <frenchrd@ornl.gov>               Robert.French           <frenchrd@ornl.gov>
-Robert D. French      <frenchrd@ornl.gov>               robertdfrench           <frenchrd@ornl.gov>
-Saravan Pantham       <saravan.pantham@gmail.com>       Saravan Pantham         <pantham1@surface86.llnl.gov>
-Sergey Kosukhin       <sergey.kosukhin@mpimet.mpg.de>   Sergey Kosukhin         <skosukhin@gmail.com>
-Stephen Herbein       <sherbein@udel.edu>               Stephen Herbein         <stephen272@gmail.com>
-Todd Gamblin          <tgamblin@llnl.gov>               George Todd Gamblin     <gamblin2@llnl.gov>
-Todd Gamblin          <tgamblin@llnl.gov>               Todd Gamblin            <gamblin2@llnl.gov>
-Tom Scogland          <tscogland@llnl.gov>              Tom Scogland            <scogland1@llnl.gov>
-Tom Scogland          <tscogland@llnl.gov>              Tom Scogland            <tom.scogland@gmail.com>
-Tzanio Kolev          <tzanio@llnl.gov>                 Tzanio                  <tzanio@llnl.gov>
+Todd Gamblin       <tgamblin@llnl.gov>          George Todd Gamblin <gamblin2@llnl.gov>
+Todd Gamblin       <tgamblin@llnl.gov>          Todd Gamblin        <gamblin2@llnl.gov>
+Adam Moody         <moody20@llnl.gov>           Adam T. Moody       <moody20@llnl.gov>
+Alfredo Gimenez    <gimenez1@llnl.gov>          Alfredo Gimenez     <alfredo.gimenez@gmail.com>
+David Boehme       <boehme3@llnl.gov>           David Boehme        <boehme3@sierra324.llnl.gov>
+David Boehme       <boehme3@llnl.gov>           David Boehme        <boehme3@sierra648.llnl.gov>
+Kevin Brandstatter <kjbrandstatter@gmail.com>   Kevin Brandstatter  <kbrandst@hawk.iit.edu>
+Luc Jaulmes        <luc.jaulmes@bsc.es>         Luc Jaulmes         <jaulmes1@llnl.gov>
+Saravan Pantham    <saravan.pantham@gmail.com>  Saravan Pantham     <pantham1@surface86.llnl.gov>
+Tom Scogland       <tscogland@llnl.gov>         Tom Scogland        <scogland1@llnl.gov>
+Tom Scogland       <tscogland@llnl.gov>         Tom Scogland        <tom.scogland@gmail.com>
+Joachim Protze     <protze@rz.rwth-aachen.de>   jprotze             <protze@rz.rwth-aachen.de>
+Gregory L. Lee     <lee218@llnl.gov>            Gregory L. Lee      <lee218@surface86.llnl.gov>
+Gregory L. Lee     <lee218@llnl.gov>            Gregory L. Lee      <lee218@cab687.llnl.gov>
+Gregory L. Lee     <lee218@llnl.gov>            Gregory L. Lee      <lee218@cab690.llnl.gov>
+Gregory L. Lee     <lee218@llnl.gov>            Gregory L. Lee      <lee218@catalyst159.llnl.gov>
+Gregory L. Lee     <lee218@llnl.gov>            Gregory Lee         <lee218@llnl.gov>
+Massimiliano Culpo <massimiliano.culpo@epfl.ch> Massimiliano Culpo  <massimiliano.culpo@googlemail.com>
+Massimiliano Culpo <massimiliano.culpo@epfl.ch> alalazo             <massimiliano.culpo@googlemail.com>
+Mark Miller        <miller86@llnl.gov>          miller86            <miller86@llnl.gov>

.readthedocs.yml

@@ -1,10 +0,0 @@
-version: 2
-
-sphinx:
-  configuration: lib/spack/docs/conf.py
-  fail_on_warning: true
-
-python:
-  version: 3.7
-  install:
-    - requirements: lib/spack/docs/requirements.txt

.travis.yml

@@ -0,0 +1,43 @@
+language: python
+python:
+  - "2.6"
+  - "2.7"
+
+# Use new Travis infrastructure (Docker can't sudo yet)
+sudo: false
+
+# Install coveralls to obtain code coverage
+install:
+  - "pip install coveralls"
+  - "pip install flake8"
+
+before_install:
+  # Need this for the git tests to succeed.
+  - git config --global user.email "spack@example.com"
+  - git config --global user.name "Test User"
+
+  # Need this to be able to compute the list of changed files
+  - git fetch origin develop:develop
+
+script:
+  # Regular spack setup and tests
+  - . share/spack/setup-env.sh
+  - spack compilers
+  - spack config get compilers
+  - spack install -v libdwarf
+
+  # Run unit tests with code coverage
+  - coverage run bin/spack test
+
+  # Run flake8 code style checks.
+  - share/spack/qa/run-flake8
+
+after_success:
+  - coveralls
+
+notifications:
+  email:
+    recipients:
+      - tgamblin@llnl.gov
+    on_success: change
+    on_failure: always

CHANGELOG.md

@@ -1,775 +0,0 @@
-# v0.16.2 (2021-05-22)
-
-* Major performance improvement for `spack load` and other commands. (#23661)
-* `spack fetch` is now environment-aware. (#19166)
-* Numerous fixes for the new, `clingo`-based concretizer. (#23016, #23307,
-  #23090, #22896, #22534, #20644, #20537, #21148)
-* Supoprt for automatically bootstrapping `clingo` from source. (#20652, #20657
-  #21364, #21446, #21913, #22354, #22444, #22460, #22489, #22610, #22631)
-* Python 3.10 support: `collections.abc` (#20441)
-* Fix import issues by using `__import__` instead of Spack package importe.
-  (#23288, #23290)
-* Bugfixes and `--source-dir` argument for `spack location`. (#22755, #22348,
-  #22321)
-* Better support for externals in shared prefixes. (#22653)
-* `spack build-env` now prefers specs defined in the active environment.
-  (#21642)
-* Remove erroneous warnings about quotes in `from_sourcing_files`. (#22767)
-* Fix clearing cache of `InternalConfigScope`. (#22609)
-* Bugfix for active when pkg is already active error. (#22587)
-* Make `SingleFileScope` able to repopulate the cache after clearing it.
-  (#22559)
-* Channelflow: Fix the package. (#22483)
-* More descriptive error message for bugs in `package.py` (#21811)
-* Use package-supplied `autogen.sh`. (#20319)
-* Respect `-k/verify-ssl-false` in `_existing_url` method. (#21864)
-
-
-# v0.16.1 (2021-02-22)
-
-This minor release includes a new feature and associated fixes:
-* intel-oneapi support through new packages (#20411, #20686, #20693, #20717,
-  #20732, #20808, #21377, #21448)
-
-This release also contains bug fixes/enhancements for:
-* HIP/ROCm support (#19715, #20095)
-* concretization (#19988, #20020, #20082, #20086, #20099, #20102, #20128,
-  #20182, #20193, #20194, #20196, #20203, #20247, #20259, #20307, #20362,
-  #20383, #20423, #20473, #20506, #20507, #20604, #20638, #20649, #20677,
-  #20680, #20790)
-* environment install reporting fix (#20004)
-* avoid import in ABI compatibility info (#20236)
-* restore ability of dev-build to skip patches (#20351)
-* spack find -d spec grouping (#20028)
-* spack smoke test support (#19987, #20298)
-* macOS fixes (#20038, #21662)
-* abstract spec comparisons (#20341)
-* continuous integration (#17563)
-* performance improvements for binary relocation (#19690, #20768)
-* additional sanity checks for variants in builtin packages (#20373)
-* do not pollute auto-generated configuration files with empty lists or
-  dicts (#20526)
-
-plus assorted documentation (#20021, #20174) and package bug fixes/enhancements
-(#19617, #19933, #19986, #20006, #20097, #20198, #20794, #20906, #21411).
-
-
-# v0.16.0 (2020-11-18)
-
-`v0.16.0` is a major feature release.
-
-## Major features in this release
-
-1. **New concretizer (experimental)** Our new backtracking concretizer is
-   now in Spack as an experimental feature. You will need to install
-   `clingo@master+python` and set `concretizer: clingo` in `config.yaml`
-   to use it. The original concretizer is not exhaustive and is not
-   guaranteed to find a solution if one exists. We encourage you to use
-   the new concretizer and to report any bugs you find with it. We
-   anticipate making the new concretizer the default and including all
-   required dependencies for it in Spack `v0.17`. For more details, see
-   #19501.
-
-2. **spack test (experimental)** Users can add `test()` methods to their
-   packages to run smoke tests on installations with the new `spack test`
-   command (the old `spack test` is now `spack unit-test`). `spack test`
-   is environment-aware, so you can `spack install` an environment and
-   `spack test run` smoke tests on all of its packages. Historical test
-   logs can be perused with `spack test results`. Generic smoke tests for
-   MPI implementations, C, C++, and Fortran compilers as well as specific
-   smoke tests for 18 packages. This is marked experimental because the
-   test API (`self.run_test()`) is likely to be change, but we encourage
-   users to upstream tests, and we will maintain and refactor any that
-   are added to mainline packages (#15702).
-
-3. **spack develop** New `spack develop` command allows you to develop
-   several packages at once within a Spack environment. Running
-   `spack develop foo@v1` and `spack develop bar@v2` will check
-    out specific versions of `foo` and `bar` into subdirectories, which you
-    can then build incrementally with `spack install ` (#15256).
-
-4. **More parallelism** Spack previously installed the dependencies of a
-   _single_ spec in parallel. Entire environments can now be installed in
-   parallel, greatly accelerating builds of large environments. get
-   parallelism from individual specs. Spack now parallelizes entire
-   environment builds (#18131).
-
-5. **Customizable base images for spack containerize**
-    `spack containerize` previously only output a `Dockerfile` based
-    on `ubuntu`. You may now specify any base image of your choosing (#15028).
-
-6. **more external finding** `spack external find` was added in `v0.15`,
-   but only `cmake` had support. `spack external find` can now find
-   `bison`, `cuda`, `findutils`, `flex`, `git`, `lustre` `m4`, `mpich`,
-   `mvapich2`, `ncurses`, `openmpi`, `perl`, `spectrum-mpi`, `tar`, and
-   `texinfo` on your system and add them automatically to
-   `packages.yaml`.
-
-7. **Support aocc, nvhpc, and oneapi compilers** We are aggressively
-   pursuing support for the newest vendor compilers, especially those for
-   the U.S. exascale and pre-exascale systems. Compiler classes and
-   auto-detection for `aocc`, `nvhpc`, `oneapi` are now in Spack (#19345,
-   #19294, #19330).
-
-## Additional new features of note
-
-* New `spack mark` command can be used to designate packages as explicitly
-  installed, so that `spack gc` will not garbage-collect them (#16662).
-* `install_tree` can be customized with Spack's projection format (#18341)
-* `sbang` now lives in the `install_tree` so that all users can access it (#11598)
-* `csh` and `tcsh` users no longer need to set `SPACK_ROOT` before
-  sourcing `setup-env.csh` (#18225)
-* Spec syntax now supports `variant=*` syntax for finding any package
-  that has a particular variant (#19381).
-* Spack respects `SPACK_GNUPGHOME` variable for custom GPG directories (#17139)
-* Spack now recognizes Graviton chips
-
-## Major refactors
-
-* Use spawn instead of fork on Python >= 3.8 on macOS (#18205)
-* Use indexes for public build caches (#19101, #19117, #19132, #19141,  #19209)
-* `sbang` is an external package now (https://github.com/spack/sbang, #19582)
-* `archspec` is an external package now (https://github.com/archspec/archspec, #19600)
-
-## Deprecations and Removals
-
-* `spack bootstrap` was deprecated in v0.14.0, and has now been removed.
-* `spack setup` is deprecated as of v0.16.0.
-* What was `spack test` is now called `spack unit-test`. `spack test` is
-  now the smoke testing feature in (2) above.
-
-## Bugfixes
-
-Some of the most notable bugfixes in this release include:
-
-* Better warning messages for deprecated syntax in `packages.yaml` (#18013)
-* `buildcache list --allarch` now works properly (#17827)
-* Many fixes and tests for buildcaches and binary relcoation (#15687,
-  *#17455, #17418, #17455, #15687, #18110)
-
-## Package Improvements
-
-Spack now has 5050 total packages, 720 of which were added since `v0.15`.
-
-* ROCm packages (`hip`, `aomp`, more) added by AMD (#19957, #19832, others)
-* Many improvements for ARM support
-* `llvm-flang`, `flang`, and `f18` removed, as `llvm` has real `flang`
-  support since Flang was merged to LLVM mainline
-* Emerging support for `spack external find` and `spack test` in packages.
-
-## Infrastructure
-
-* Major infrastructure improvements to pipelines on `gitlab.spack.io`
-* Support for testing PRs from forks (#19248) is being enabled for all
-  forks to enable rolling, up-to-date binary builds on `develop`
-
-
-# v0.15.4 (2020-08-12)
-
-This release contains one feature addition:
-
-* Users can set `SPACK_GNUPGHOME` to override Spack's GPG path (#17139)
-
-Several bugfixes for CUDA, binary packaging, and `spack -V`:
-
-* CUDA package's `.libs` method searches for `libcudart` instead of `libcuda` (#18000)
-* Don't set `CUDAHOSTCXX` in environments that contain CUDA (#17826)
-* `buildcache create`: `NoOverwriteException` is a warning, not an error (#17832)
-* Fix `spack buildcache list --allarch` (#17884)
-* `spack -V` works with `releases/latest` tag and shallow clones (#17884)
-
-And fixes for GitHub Actions and tests to ensure that CI passes on the
-release branch (#15687, #17279, #17328, #17377, #17732).
-
-# v0.15.3 (2020-07-28)
-
-This release contains the following bugfixes:
-
-* Fix handling of relative view paths (#17721)
-* Fixes for binary relocation (#17418, #17455)
-* Fix redundant printing of error messages in build environment (#17709)
-
-It also adds a support script for Spack tutorials:
-
-* Add a tutorial setup script to share/spack (#17705, #17722)
-
-# v0.15.2 (2020-07-23)
-
-This minor release includes two new features:
-
-* Spack install verbosity is decreased, and more debug levels are added (#17546)
-* The $spack/share/spack/keys directory contains public keys that may be optionally trusted for public binary mirrors (#17684)
-
-This release also includes several important fixes:
-
-* MPICC and related variables are now cleand in the build environment (#17450)
-* LLVM flang only builds CUDA offload components when +cuda (#17466)
-* CI pipelines no longer upload user environments that can contain secrets to the internet (#17545)
-* CI pipelines add bootstrapped compilers to the compiler config (#17536)
-* `spack buildcache list` does not exit on first failure and lists later mirrors (#17565)
-* Apple's "gcc" executable that is an apple-clang compiler does not generate a gcc compiler config (#17589)
-* Mixed compiler toolchains are merged more naturally across different compiler suffixes (#17590)
-* Cray Shasta platforms detect the OS properly (#17467)
-* Additional more minor fixes.
-
-# v0.15.1 (2020-07-10)
-
-This minor release includes several important fixes:
-
-* Fix shell support on Cray (#17386)
-* Fix use of externals installed with other Spack instances (#16954)
-* Fix gcc+binutils build (#9024)
-* Fixes for usage of intel-mpi (#17378 and #17382)
-* Fixes to Autotools config.guess detection (#17333 and #17356)
-* Update `spack install` message to prompt user when an environment is not
-  explicitly activated (#17454)
-
-This release also adds a mirror for all sources that are
-fetched in Spack (#17077). It is expected to be useful when the
-official website for a Spack package is unavailable.
-
-# v0.15.0 (2020-06-28)
-
-`v0.15.0` is a major feature release.
-
-## Major Features in this release
-
-1. **Cray support** Spack will now work properly on Cray "Cluster"
-systems (non XC systems) and after a `module purge` command on Cray
-systems. See #12989
-
-2. **Virtual package configuration** Virtual packages are allowed in
-packages.yaml configuration. This allows users to specify a virtual
-package as non-buildable without needing to specify for each
-implementation. See #14934
-
-3. **New config subcommands** This release adds `spack config add` and
-`spack config remove` commands to add to and remove from yaml
-configuration files from the CLI. See #13920
-
-4. **Environment activation** Anonymous environments are **no longer**
-automatically activated in the current working directory. To activate
-an environment from a `spack.yaml` file in the current directory, use
-the `spack env activate .` command. This removes a concern that users
-were too easily polluting their anonymous environments with accidental
-installations. See #17258
-
-5. **Apple clang compiler** The clang compiler and the apple-clang
-compiler are now separate compilers in Spack. This allows Spack to
-improve support for the apple-clang compiler. See #17110
-
-6. **Finding external packages** Spack packages can now support an API
-for finding external installations. This allows the `spack external
-find` command to automatically add installations of those packages to
-the user's configuration. See #15158
-
-
-## Additional new features of note
-
-* support for using Spack with the fish shell (#9279)
-* `spack load --first` option to load first match (instead of prompting user) (#15622)
-* support the Cray cce compiler both new and classic versions (#17256, #12989)
-* `spack dev-build` command:
-  * supports stopping before a specified phase (#14699)
-  * supports automatically launching a shell in the build environment (#14887)
-* `spack install --fail-fast` allows builds to fail at the first error (rather than best-effort) (#15295)
-* environments: SpecList references can be dereferenced as compiler or dependency constraints (#15245)
-* `spack view` command: new support for a copy/relocate view type (#16480)
-* ci pipelines: see documentation for several improvements
-* `spack mirror -a` command now supports excluding packages (#14154)
-* `spack buildcache create` is now environment-aware (#16580)
-* module generation: more flexible format for specifying naming schemes (#16629)
-* lmod module generation: packages can be configured as core specs for lmod hierarchy (#16517)
-
-## Deprecations and Removals
-
-The following commands were deprecated in v0.13.0, and have now been removed:
-
-* `spack configure`
-* `spack build`
-* `spack diy`
-
-The following commands were deprecated in v0.14.0, and will be removed in the next major release:
-
-* `spack bootstrap`
-
-## Bugfixes
-
-Some of the most notable bugfixes in this release include:
-
-* Spack environments can now contain the string `-h` (#15429)
-* The `spack install` gracefully handles being backgrounded (#15723, #14682)
-* Spack uses `-isystem` instead of `-I` in cases that the underlying build system does as well (#16077)
-* Spack no longer prints any specs that cannot be safely copied into a Spack command (#16462)
-* Incomplete Spack environments containing python no longer cause problems (#16473)
-* Several improvements to binary package relocation
-
-## Package Improvements
-
-The Spack project is constantly engaged in routine maintenance,
-bugfixes, and improvements for the package ecosystem. Of particular
-note in this release are the following:
-
-* Spack now contains 4339 packages. There are 430 newly supported packages in v0.15.0
-* GCC now builds properly on ARM architectures (#17280)
-* Python: patched to support compiling mixed C/C++ python modules through distutils (#16856)
-* improvements to pytorch and py-tensorflow packages
-* improvements to major MPI implementations: mvapich2, mpich, openmpi, and others
-
-## Spack Project Management:
-
-* Much of the Spack CI infrastructure has moved from Travis to GitHub Actions (#16610, #14220, #16345)
-* All merges to the `develop` branch run E4S CI pipeline (#16338)
-* New `spack debug report` command makes reporting bugs easier (#15834)
-
-# v0.14.2 (2020-04-15)
-
-This is a minor release on the `0.14` series. It includes performance
-improvements and bug fixes:
-
-* Improvements to how `spack install` handles foreground/background (#15723)
-* Major performance improvements for reading the package DB (#14693, #15777)
-* No longer check for the old `index.yaml` database file (#15298)
-* Properly activate environments with '-h' in the name (#15429)
-* External packages have correct `.prefix` in environments/views (#15475)
-* Improvements to computing env modifications from sourcing files (#15791)
-* Bugfix on Cray machines when getting `TERM` env variable (#15630)
-* Avoid adding spurious `LMOD` env vars to Intel modules (#15778)
-* Don't output [+] for mock installs run during tests (#15609)
-
-# v0.14.1 (2020-03-20)
-
-This is a bugfix release on top of `v0.14.0`.  Specific fixes include:
-
-* several bugfixes for parallel installation (#15339, #15341, #15220, #15197)
-* `spack load` now works with packages that have been renamed (#14348)
-* bugfix for `suite-sparse` installation (#15326)
-* deduplicate identical suffixes added to module names (#14920)
-* fix issues with `configure_args` during module refresh (#11084)
-* increased test coverage and test fixes (#15237, #15354, #15346)
-* remove some unused code (#15431)
-
-# v0.14.0 (2020-02-23)
-
-`v0.14.0` is a major feature release, with 3 highlighted features:
-
-1. **Distributed builds.** Multiple Spack instances will now coordinate
-   properly with each other through locks. This works on a single node
-   (where you've called `spack` several times) or across multiple nodes
-   with a shared filesystem. For example, with SLURM, you could build
-   `trilinos` and its dependencies on 2 24-core nodes, with 3 Spack
-   instances per node and 8 build jobs per instance, with `srun -N 2 -n 6
-   spack install -j 8 trilinos`. This requires a filesystem with locking
-   enabled, but not MPI or any other library for parallelism.
-
-2.  **Build pipelines.** You can also build in parallel through Gitlab
-   CI. Simply create a Spack environment and push it to Gitlab to build
-   on Gitlab runners. Pipeline support is now integrated into a single
-   `spack ci` command, so setting it up is easier than ever.  See the
-   [Pipelines section](https://spack.readthedocs.io/en/v0.14.0/pipelines.html)
-   in the docs.
-
-3. **Container builds.** The new `spack containerize` command allows you
-   to create a Docker or Singularity recipe from any Spack environment.
-   There are options to customize the build if you need them. See the
-   [Container Images section](https://spack.readthedocs.io/en/latest/containers.html)
-   in the docs.
-
-In addition, there are several other new commands, many bugfixes and
-improvements, and `spack load` no longer requires modules, so you can use
-it the same way on your laptop or on your supercomputer.
-
-Spack grew by over 300 packages since our last release in November 2019,
-and the project grew to over 500 contributors.  Thanks to all of you for
-making yet another great release possible. Detailed notes below.
-
-## Major new core features
-* Distributed builds: spack instances coordinate and build in parallel (#13100)
-* New `spack ci` command to manage CI pipelines (#12854)
-* Generate container recipes from environments: `spack containerize` (#14202)
-* `spack load` now works without using modules (#14062, #14628)
-* Garbage collect old/unused installations with `spack gc` (#13534)
-* Configuration files all set environment modifications the same way (#14372,
-  [docs](https://spack.readthedocs.io/en/v0.14.0/configuration.html#environment-modifications))
-* `spack commands --format=bash` auto-generates completion (#14393, #14607)
-* Packages can specify alternate fetch URLs in case one fails (#13881)
-
-## Improvements
-* Improved locking for concurrency with environments (#14676, #14621, #14692)
-* `spack test` sends args to `pytest`, supports better listing (#14319)
-* Better support for aarch64 and cascadelake microarch (#13825, #13780, #13820)
-* Archspec is now a separate library (see https://github.com/archspec/archspec)
-* Many improvements to the `spack buildcache` command (#14237, #14346,
-  #14466, #14467, #14639, #14642, #14659, #14696, #14698, #14714, #14732,
-  #14929, #15003, #15086, #15134)
-
-## Selected Bugfixes
-* Compilers now require an exact match on version (#8735, #14730, #14752)
-* Bugfix for patches that specified specific versions (#13989)
-* `spack find -p` now works in environments (#10019, #13972)
-* Dependency queries work correctly in `spack find` (#14757)
-* Bugfixes for locking upstream Spack instances chains (#13364)
-* Fixes for PowerPC clang optimization flags (#14196)
-* Fix for issue with compilers and specific microarchitectures (#13733, #14798)
-
-## New commands and options
-* `spack ci` (#12854)
-* `spack containerize` (#14202)
-* `spack gc` (#13534)
-* `spack load` accepts `--only package`, `--only dependencies` (#14062, #14628)
-* `spack commands --format=bash` (#14393)
-* `spack commands --update-completion` (#14607)
-* `spack install --with-cache` has new option: `--no-check-signature` (#11107)
-* `spack test` now has `--list`, `--list-long`, and `--list-names` (#14319)
-* `spack install --help-cdash` moves CDash help out of the main help (#13704)
-
-## Deprecations
-* `spack release-jobs` has been rolled into `spack ci`
-* `spack bootstrap` will be removed in a future version, as it is no longer
-  needed to set up modules (see `spack load` improvements above)
-
-## Documentation
-* New section on building container images with Spack (see
-  [docs](https://spack.readthedocs.io/en/latest/containers.html))
-* New section on using `spack ci` command to build pipelines (see
-  [docs](https://spack.readthedocs.io/en/latest/pipelines.html))
-* Document how to add conditional dependencies (#14694)
-* Document how to use Spack to replace Homebrew/Conda (#13083, see
-  [docs](https://spack.readthedocs.io/en/latest/workflows.html#using-spack-to-replace-homebrew-conda))
-
-## Important package changes
-* 3,908 total packages (345 added since 0.13.0)
-* Added first cut at a TensorFlow package (#13112)
-* We now build R without "recommended" packages, manage them w/Spack (#12015)
-* Elpa and OpenBLAS now leverage microarchitecture support (#13655, #14380)
-* Fix `octave` compiler wrapper usage (#14726)
-* Enforce that packages in `builtin` aren't missing dependencies (#13949)
-
-
-# v0.13.4 (2020-02-07)
-
-This release contains several bugfixes:
-
-* bugfixes for invoking python in various environments (#14349, #14496, #14569)
-* brought tab completion up to date (#14392)
-* bugfix for removing extensions from views in order (#12961)
-* bugfix for nondeterministic hashing for specs with externals (#14390)
-
-# v0.13.3 (2019-12-23)
-
-This release contains more major performance improvements for Spack
-environments, as well as bugfixes for mirrors and a `python` issue with
-RHEL8.
-
-* mirror bugfixes: symlinks, duplicate patches, and exception handling (#13789)
-* don't try to fetch `BundlePackages` (#13908)
-* avoid re-fetching patches already added to a mirror (#13908)
-* avoid re-fetching already added patches (#13908)
-* avoid re-fetching already added patches (#13908)
-* allow repeated invocations of `spack mirror create` on the same dir (#13908)
-* bugfix for RHEL8 when `python` is unavailable (#14252)
-* improve concretization performance in environments (#14190)
-* improve installation performance in environments (#14263)
-
-# v0.13.2 (2019-12-04)
-
-This release contains major performance improvements for Spack environments, as
-well as some bugfixes and minor changes.
-
-* allow missing modules if they are blacklisted (#13540)
-* speed up environment activation (#13557)
-* mirror path works for unknown versions (#13626)
-* environments: don't try to modify run-env if a spec is not installed (#13589)
-* use semicolons instead of newlines in module/python command (#13904)
-* verify.py: os.path.exists exception handling (#13656)
-* Document use of the maintainers field (#13479)
-* bugfix with config caching (#13755)
-* hwloc: added 'master' version pointing at the HEAD of the master branch (#13734)
-* config option to allow gpg warning suppression (#13744)
-* fix for relative symlinks when relocating binary packages (#13727)
-* allow binary relocation of strings in relative binaries (#13724)
-
-# v0.13.1 (2019-11-05)
-
-This is a bugfix release on top of `v0.13.0`.  Specific fixes include:
-
-* `spack find` now displays variants and other spec constraints
-* bugfix: uninstall should find concrete specs by DAG hash (#13598)
-* environments: make shell modifications partially unconditional (#13523)
-* binary distribution: relocate text files properly in relative binaries (#13578)
-* bugfix: fetch prefers to fetch local mirrors over remote resources (#13545)
-* environments: only write when necessary (#13546)
-* bugfix: spack.util.url.join() now handles absolute paths correctly (#13488)
-* sbang: use utf-8 for encoding when patching (#13490)
-* Specs with quoted flags containing spaces are parsed correctly (#13521)
-* targets: print a warning message before downgrading (#13513)
-* Travis CI: Test Python 3.8 (#13347)
-* Documentation: Database.query methods share docstrings (#13515)
-* cuda: fix conflict statements for x86-64 targets (#13472)
-* cpu: fix clang flags for generic x86_64 (#13491)
-* syaml_int type should use int.__repr__ rather than str.__repr__ (#13487)
-* elpa: prefer 2016.05.004 until sse/avx/avx2 issues are resolved (#13530)
-* trilinos: temporarily constrain netcdf@:4.7.1 (#13526)
-
-# v0.13.0 (2019-10-25)
-
-`v0.13.0` is our biggest Spack release yet, with *many* new major features.
-From facility deployment to improved environments, microarchitecture
-support, and auto-generated build farms, this release has features for all of
-our users.
-
-Spack grew by over 700 packages in the past year, and the project now has
-over 450 contributors.  Thanks to all of you for making this release possible.
-
-## Major new core features
-- Chaining: use dependencies from external "upstream" Spack instances
-- Environments now behave more like virtualenv/conda
-  - Each env has a *view*: a directory with all packages symlinked in
-  - Activating an environment sets `PATH`, `LD_LIBRARY_PATH`, `CPATH`,
-    `CMAKE_PREFIX_PATH`, `PKG_CONFIG_PATH`, etc. to point to this view.
-- Spack detects and builds specifically for your microarchitecture
-  - named, understandable targets like `skylake`, `broadwell`, `power9`, `zen2`
-  - Spack knows which compilers can build for which architectures
-  - Packages can easily query support for features like `avx512` and `sse3`
-  - You can pick a target with, e.g. `spack install foo target=icelake`
-- Spack stacks: combinatorial environments for facility deployment
-  - Environments can now build cartesian products of specs (with `matrix:`)
-  - Conditional syntax support to exclude certain builds from the stack
-- Projections: ability to build easily navigable symlink trees environments
-- Support no-source packages (BundlePackage) to aggregate related packages
-- Extensions: users can write custom commands that live outside of Spack repo
-- Support ARM and Fujitsu compilers
-
-## CI/build farm support
-- `spack release-jobs` can detect `package.py` changes and generate
-    `.gitlab-ci.yml` to create binaries for an environment or stack
-	in parallel (initial support -- will change in future release).
-- Results of build pipelines can be uploaded to a CDash server.
-- Spack can now upload/fetch from package mirrors in Amazon S3
-
-## New commands/options
-- `spack mirror create --all` downloads *all* package sources/resources/patches
-- `spack dev-build` runs phases of the install pipeline on the working directory
-- `spack deprecate` permanently symlinks an old, unwanted package to a new one
-- `spack verify` chcecks that packages' files match what was originally installed
-- `spack find --json` prints `JSON` that is easy to parse with, e.g. `jq`
-- `spack find --format FORMAT` allows you to flexibly print package metadata
-- `spack spec --json` prints JSON version of `spec.yaml`
-
-## Selected improvements
-- Auto-build requested compilers if they do not exist
-- Spack automatically adds `RPATHs` needed to make executables find compiler
-    runtime libraries (e.g., path to newer `libstdc++` in `icpc` or `g++`)
-- setup-env.sh is now compatible with Bash, Dash, and Zsh
-- Spack now caps build jobs at min(16, ncores) by default
-- `spack compiler find` now also throttles number of spawned processes
-- Spack now writes stage directories directly to `$TMPDIR` instead of
-    symlinking stages within `$spack/var/spack/cache`.
-- Improved and more powerful `spec` format strings
-- You can pass a `spec.yaml` file anywhere in the CLI you can type a spec.
-- Many improvements to binary caching
-- Gradually supporting new features from Environment Modules v4
-- `spack edit` respects `VISUAL` environment variable
-- Simplified package syntax for specifying build/run environment modifications
-- Numerous improvements to support for environments across Spack commands
-- Concretization improvements
-
-## Documentation
-- Multi-lingual documentation (Started a Japanese translation)
-- Tutorial now has its own site at spack-tutorial.readthedocs.io
-  - This enables us to keep multiple versions of the tutorial around
-
-## Deprecations
-- Spack no longer supports dotkit (LLNL's homegrown, now deprecated module tool)
-- `spack build`, `spack configure`, `spack diy` deprecated in favor of
-    `spack dev-build` and `spack install`
-
-## Important package changes
-- 3,563 total packages (718 added since 0.12.1)
-- Spack now defaults to Python 3 (previously preferred 2.7 by default)
-- Much improved ARM support thanks to Fugaku (RIKEN) and SNL teams
-- Support new special versions: master, trunk, and head (in addition to develop)
-- Better finding logic for libraries and headers
-
-
-# v0.12.1 (2018-11-13)
-
-This is a minor bugfix release, with a minor fix in the tutorial and a `flake8` fix.
-
-Bugfixes
-* Add `r` back to regex strings in binary distribution
-* Fix gcc install version in the tutorial
-
-
-# v0.12.0 (2018-11-13)
-
-## Major new features
-- Spack environments
-- `spack.yaml` and `spack.lock` files for tracking dependencies
-- Custom configurations via command line
-- Better support for linking Python packages into view directories
-- Packages have more control over compiler flags via flag handlers
-- Better support for module file generation
-- Better support for Intel compilers, Intel MPI, etc.
-- Many performance improvements, improved startup time
-
-## License
-- As of this release, all of Spack is permissively licensed under Apache-2.0 or MIT, at the user's option.
-- Consents from over 300 contributors were obtained to make this relicense possible.
-- Previous versions were distributed under the LGPL license, version 2.1.
-
-## New packages
-Over 2,900 packages (800 added since last year)
-
-Spack would not be possible without our community.  Thanks to all of our
-[contributors](https://github.com/spack/spack/graphs/contributors) for the
-new features and packages in this release!
-
-
-# v0.11.2 (2018-02-07)
-
-This release contains the following fixes:
-
-* Fixes for `gfortran` 7 compiler detection (#7017)
-* Fixes for exceptions thrown during module generation (#7173)
-
-
-# v0.11.1 (2018-01-19)
-
-This release contains bugfixes for compiler flag handling.  There were issues in `v0.11.0` that caused some packages to be built without proper optimization.
-
-Fixes:
-* Issue #6999: FFTW installed with Spack 0.11.0 gets built without optimisations
-
-Includes:
-* PR #6415: Fixes for flag handling behavior
-* PR #6960: Fix type issues with setting flag handlers
-* 880e319: Upstream fixes to `list_url` in various R packages
-
-
-# v0.11.0 (2018-01-17)
-
-Spack v0.11.0 contains many improvements since v0.10.0.
-Below is a summary of the major features, broken down by category.
-
-## New packages
-- Spack now has 2,178 packages (from 1,114 in v0.10.0)
-- Many more Python packages (356) and R packages (471)
-- 48 Exascale Proxy Apps (try `spack list -t proxy-app`)
-
-
-## Core features for users
-- Relocatable binary packages (`spack buildcache`, #4854)
-- Spack now fully supports Python 3 (#3395)
-- Packages can be tagged and searched by tags (#4786)
-- Custom module file templates using Jinja (#3183)
-- `spack bootstrap` command now sets up a basic module environment (#3057)
-- Simplified and better organized help output (#3033)
-- Improved, less redundant `spack install` output (#5714, #5950)
-- Reworked `spack dependents` and `spack dependencies` commands (#4478)
-
-
-## Major new features for packagers
-- Multi-valued variants (#2386)
-- New `conflicts()` directive (#3125)
-- New dependency type: `test` dependencies (#5132)
-- Packages can require their own patches on dependencies (#5476)
-  - `depends_on(..., patches=<patch list>)`
-- Build interface for passing linker information through Specs (#1875)
-  - Major packages that use blas/lapack now use this interface
-- Flag handlers allow packages more control over compiler flags (#6415)
-- Package subclasses support many more build systems:
-  - autotools, perl, qmake, scons, cmake, makefile, python, R, WAF
-  - package-level support for installing Intel HPC products (#4300)
-- `spack blame` command shows contributors to packages (#5522)
-- `spack create` now guesses many more build systems (#2707)
-- Better URL parsing to guess package version URLs (#2972)
-- Much improved `PythonPackage` support (#3367)
-
-
-## Core
-- Much faster concretization (#5716, #5783)
-- Improved output redirection (redirecting build output works properly #5084)
-- Numerous improvements to internal structure and APIs
-
-
-## Tutorials & Documentation
-- Many updates to documentation
-- [New tutorial material from SC17](https://spack.readthedocs.io/en/latest/tutorial.html)
-  - configuration
-  - build systems
-  - build interface
-  - working with module generation
-- Documentation on docker workflows and best practices
-
-
-## Selected improvements and bug fixes
-- No longer build Python eggs -- installations are plain directories (#3587)
-- Improved filtering of system paths from build PATHs and RPATHs (#2083, #3910)
-- Git submodules are properly handled on fetch (#3956)
-- Can now set default number of parallel build jobs in `config.yaml`
-- Improvements to `setup-env.csh` (#4044)
-- Better default compiler discovery on Mac OS X (#3427)
-  - clang will automatically mix with gfortran
-- Improved compiler detection on Cray machines (#3075)
-- Better support for IBM XL compilers
-- Better tab completion
-- Resume gracefully after prematurely terminated partial installs (#4331)
-- Better mesa support (#5170)
-
-
-Spack would not be possible without our community.  Thanks to all of our
-[contributors](https://github.com/spack/spack/graphs/contributors) for the
-new features and packages in this release!
-
-
-# v0.10.0 (2017-01-17)
-
-This is Spack `v0.10.0`.  With this release, we will start to push Spack
-releases more regularly.  This is the last Spack release without
-automated package testing.  With the next release, we will begin to run
-package tests in addition to unit tests.
-
-Spack has grown rapidly from 422 to
-[1,114 packages](https://spack.readthedocs.io/en/v0.10.0/package_list.html),
-thanks to the hard work of over 100 contributors.  Below is a condensed
-version of all the changes since `v0.9.1`.
-
-### Packages
-- Grew from 422 to 1,114 packages
-  - Includes major updates like X11, Qt
-  - Expanded HPC, R, and Python ecosystems
-
-### Core
-- Major speed improvements for spack find and concretization
-- Completely reworked architecture support
-  - Platforms can have front-end and back-end OS/target combinations
-  - Much better support for Cray and BG/Q cross-compiled environments
-- Downloads are now cached locally
-- Support installations in deeply nested directories: patch long shebangs using `sbang`
-
-### Basic usage
-- Easier global configuration via config.yaml
-  - customize install, stage, and cache locations
-- Hierarchical configuration scopes: default, site, user
-  - Platform-specific scopes allow better per-platform defaults
-- Ability to set `cflags`, `cxxflags`, `fflags` on the command line
-- YAML-configurable support for both Lmod and tcl modules in mainline
-- `spack install` supports --dirty option for emergencies
-
-### For developers
-- Support multiple dependency types: `build`, `link`, and `run`
-- Added `Package` base classes for custom build systems
-  - `AutotoolsPackage`, `CMakePackage`, `PythonPackage`, etc.
-  - `spack create` now guesses many more build systems
-- Development environment integration with `spack setup`
-- New interface to pass linking information via `spec` objects
-  - Currently used for `BLAS`/`LAPACK`/`SCALAPACK` libraries
-  - Polymorphic virtual dependency attributes: `spec['blas'].blas_libs`
-
-### Testing & Documentation
-- Unit tests run continuously on Travis CI for Mac and Linux
-- Switched from `nose` to `pytest` for unit tests.
-  - Unit tests take 1 minute now instead of 8
-- Massively expanded documentation
-- Docs are now hosted on [spack.readthedocs.io](https://spack.readthedocs.io)

COPYRIGHT

@@ -1,95 +0,0 @@
-Intellectual Property Notice
-------------------------------
-
-Spack is licensed under the Apache License, Version 2.0 (LICENSE-APACHE
-or http://www.apache.org/licenses/LICENSE-2.0) or the MIT license,
-(LICENSE-MIT or http://opensource.org/licenses/MIT), at your option.
-
-Copyrights and patents in the Spack project are retained by contributors.
-No copyright assignment is required to contribute to Spack.
-
-Spack was originally distributed under the LGPL-2.1 license. Consent from
-contributors to relicense to Apache-2.0/MIT is documented at
-https://github.com/spack/spack/issues/9137.
-
-
-SPDX usage
-------------
-
-Individual files contain SPDX tags instead of the full license text.
-This enables machine processing of license information based on the SPDX
-License Identifiers that are available here: https://spdx.org/licenses/
-
-Files that are dual-licensed as Apache-2.0 OR MIT contain the following
-text in the license header:
-
-    SPDX-License-Identifier: (Apache-2.0 OR MIT)
-
-
-External Packages
--------------------
-
-Spack bundles most external dependencies in lib/spack/external. It also
-includes the sbang tool directly in bin/sbang. These packages are covered
-by various permissive licenses. A summary listing follows. See the
-license included with each package for full details.
-
-PackageName: argparse
-PackageHomePage: https://pypi.python.org/pypi/argparse
-PackageLicenseDeclared: Python-2.0
-
-PackageName: ctest_log_parser
-PackageHomePage: https://github.com/Kitware/CMake
-PackageLicenseDeclared: BSD-3-Clause
-
-PackageName: distro
-PackageHomePage: https://pypi.python.org/pypi/distro
-PackageLicenseDeclared: Apache-2.0
-
-PackageName: functools
-PackageHomePage: https://github.com/python/cpython/blob/2.7/Lib/functools.py
-PackageLicenseDeclared: Python-2.0
-
-PackageName: jinja2
-PackageHomePage: https://pypi.python.org/pypi/Jinja2
-PackageLicenseDeclared: BSD-3-Clause
-
-PackageName: jsonschema
-PackageHomePage: https://pypi.python.org/pypi/jsonschema
-PackageLicenseDeclared: MIT
-
-PackageName: markupsafe
-PackageHomePage: https://pypi.python.org/pypi/MarkupSafe
-PackageLicenseDeclared: BSD-3-Clause
-
-PackageName: orderddict
-Homepage: https://pypi.org/project/ordereddict/
-PackageLicenseDeclared: MIT
-
-PackageName: py
-PackageHomePage: https://pypi.python.org/pypi/py
-PackageLicenseDeclared: MIT
-
-PackageName: pytest
-PackageHomePage: https://pypi.python.org/pypi/pytest
-PackageLicenseDeclared: MIT
-
-PackageName: ruamel.yaml
-PackageHomePage: https://yaml.readthedocs.io/
-PackageLicenseDeclared: MIT
-
-PackageName: sbang
-PackageHomePage: https://github.com/spack/sbang
-PackageLicenseDeclared: Apache-2.0 OR MIT
-
-PackageName: six
-PackageHomePage: https://pypi.python.org/pypi/six
-PackageLicenseDeclared: MIT
-
-PackageName: macholib
-PackageHomePage: https://macholib.readthedocs.io/en/latest/index.html
-PackageLicenseDeclared: MIT
-
-PackageName: altgraph
-PackageHomePage: https://altgraph.readthedocs.io/en/latest/index.html
-PackageLicenseDeclared: MIT

LICENSE

@@ -0,0 +1,393 @@
+########################################################################
+GNU LESSER GENERAL PUBLIC LICENSE (Lesser GPL)
+Version 2.1, February 1999
+########################################################################
+Copyright (c) 2013-2016, Lawrence Livermore National Security, LLC.
+Produced at the Lawrence Livermore National Laboratory.
+
+This file is part of Spack.
+Created by Todd Gamblin, tgamblin@llnl.gov, All rights reserved.
+LLNL-CODE-647188
+
+For details, see https://github.com/llnl/spack
+
+This program is free software; you can redistribute it and/or modify
+it under the terms of the GNU Lesser General Public License (as
+published by the Free Software Foundation) version 2.1, February 1999.
+
+This program is distributed in the hope that it will be useful, but
+WITHOUT ANY WARRANTY; without even the IMPLIED WARRANTY OF
+MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the terms and
+conditions of the GNU Lesser General Public License for more details.
+
+You should have received a copy of the GNU Lesser General Public
+License along with this program; if not, write to the Free Software
+Foundation, Inc., 59 Temple Place, Suite 330, Boston, MA 02111-1307 USA
+
+########################################################################
+LLNL NOTICE AND TERMS AND CONDITIONS OF THE GNU LGPL
+
+LLNL Preamble Notice
+
+A. This notice is required to be provided under LLNL's contract with
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+   Lawrence Livermore National Laboratory under Contract
+   No. DE-AC52-07NA27344 with the DOE.
+
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-      the terms of any separate license agreement you may have executed
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-      appropriateness of using or redistributing the Work and assume any
-      risks associated with Your exercise of permissions under this License.
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-   8. Limitation of Liability. In no event and under no legal theory,
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-      defend, and hold each Contributor harmless for any liability
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-
-   END OF TERMS AND CONDITIONS
-
-   APPENDIX: How to apply the Apache License to your work.
-
-      To apply the Apache License to your work, attach the following
-      boilerplate notice, with the fields enclosed by brackets "[]"
-      replaced with your own identifying information. (Don't include
-      the brackets!)  The text should be enclosed in the appropriate
-      comment syntax for the file format. We also recommend that a
-      file or class name and description of purpose be included on the
-      same "printed page" as the copyright notice for easier
-      identification within third-party archives.
-
-   Copyright [yyyy] [name of copyright owner]
-
-   Licensed under the Apache License, Version 2.0 (the "License");
-   you may not use this file except in compliance with the License.
-   You may obtain a copy of the License at
-
-       http://www.apache.org/licenses/LICENSE-2.0
-
-   Unless required by applicable law or agreed to in writing, software
-   distributed under the License is distributed on an "AS IS" BASIS,
-   WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied.
-   See the License for the specific language governing permissions and
-   limitations under the License.

LICENSE-MIT

@@ -1,21 +0,0 @@
-MIT License
-
-Copyright (c) 2013-2020 LLNS, LLC and other Spack Project Developers.
-
-Permission is hereby granted, free of charge, to any person obtaining a copy
-of this software and associated documentation files (the "Software"), to deal
-in the Software without restriction, including without limitation the rights
-to use, copy, modify, merge, publish, distribute, sublicense, and/or sell
-copies of the Software, and to permit persons to whom the Software is
-furnished to do so, subject to the following conditions:
-
-The above copyright notice and this permission notice shall be included in all
-copies or substantial portions of the Software.
-
-THE SOFTWARE IS PROVIDED "AS IS", WITHOUT WARRANTY OF ANY KIND, EXPRESS OR
-IMPLIED, INCLUDING BUT NOT LIMITED TO THE WARRANTIES OF MERCHANTABILITY,
-FITNESS FOR A PARTICULAR PURPOSE AND NONINFRINGEMENT. IN NO EVENT SHALL THE
-AUTHORS OR COPYRIGHT HOLDERS BE LIABLE FOR ANY CLAIM, DAMAGES OR OTHER
-LIABILITY, WHETHER IN AN ACTION OF CONTRACT, TORT OR OTHERWISE, ARISING FROM,
-OUT OF OR IN CONNECTION WITH THE SOFTWARE OR THE USE OR OTHER DEALINGS IN THE
-SOFTWARE.

NOTICE

@@ -1,21 +0,0 @@
-This work was produced under the auspices of the U.S. Department of
-Energy by Lawrence Livermore National Laboratory under Contract
-DE-AC52-07NA27344.
-
-This work was prepared as an account of work sponsored by an agency of
-the United States Government. Neither the United States Government nor
-Lawrence Livermore National Security, LLC, nor any of their employees
-makes any warranty, expressed or implied, or assumes any legal liability
-or responsibility for the accuracy, completeness, or usefulness of any
-information, apparatus, product, or process disclosed, or represents that
-its use would not infringe privately owned rights.
-
-Reference herein to any specific commercial product, process, or service
-by trade name, trademark, manufacturer, or otherwise does not necessarily
-constitute or imply its endorsement, recommendation, or favoring by the
-United States Government or Lawrence Livermore National Security, LLC.
-
-The views and opinions of authors expressed herein do not necessarily
-state or reflect those of the United States Government or Lawrence
-Livermore National Security, LLC, and shall not be used for advertising
-or product endorsement purposes.

README.md

@@ -1,120 +1,85 @@
-# <img src="https://cdn.rawgit.com/spack/spack/develop/share/spack/logo/spack-logo.svg" width="64" valign="middle" alt="Spack"/> Spack
+![image](share/spack/logo/spack-logo-text-64.png "Spack")
+============
 
-[![Unit Tests](https://github.com/spack/spack/workflows/linux%20tests/badge.svg)](https://github.com/spack/spack/actions)
-[![Bootstrapping](https://github.com/spack/spack/actions/workflows/bootstrap.yml/badge.svg)](https://github.com/spack/spack/actions/workflows/bootstrap.yml)
-[![macOS Builds (nightly)](https://github.com/spack/spack/workflows/macOS%20builds%20nightly/badge.svg?branch=develop)](https://github.com/spack/spack/actions?query=workflow%3A%22macOS+builds+nightly%22)
-[![codecov](https://codecov.io/gh/spack/spack/branch/develop/graph/badge.svg)](https://codecov.io/gh/spack/spack)
-[![Containers](https://github.com/spack/spack/actions/workflows/build-containers.yml/badge.svg)](https://github.com/spack/spack/actions/workflows/build-containers.yml)
-[![Read the Docs](https://readthedocs.org/projects/spack/badge/?version=latest)](https://spack.readthedocs.io)
-[![Slack](https://slack.spack.io/badge.svg)](https://slack.spack.io)
+[![Build Status](https://travis-ci.org/LLNL/spack.svg?branch=develop)](https://travis-ci.org/LLNL/spack)
+[![Coverage Status](https://coveralls.io/repos/github/LLNL/spack/badge.svg?branch=develop)](https://coveralls.io/github/LLNL/spack?branch=develop)
 
-Spack is a multi-platform package manager that builds and installs
-multiple versions and configurations of software. It works on Linux,
-macOS, and many supercomputers. Spack is non-destructive: installing a
-new version of a package does not break existing installations, so many
-configurations of the same package can coexist.
+Spack is a package management tool designed to support multiple
+versions and configurations of software on a wide variety of platforms
+and environments. It was designed for large supercomputing centers,
+where many users and application teams share common installations of
+software on clusters with exotic architectures, using libraries that
+do not have a standard ABI. Spack is non-destructive: installing a new
+version does not break existing installations, so many configurations
+can coexist on the same system.
 
-Spack offers a simple "spec" syntax that allows users to specify versions
-and configuration options. Package files are written in pure Python, and
-specs allow package authors to write a single script for many different
-builds of the same package.  With Spack, you can build your software
-*all* the ways you want to.
+Most importantly, Spack is simple. It offers a simple spec syntax so
+that users can specify versions and configuration options
+concisely. Spack is also simple for package authors: package files are
+written in pure Python, and specs allow package authors to write a
+single build script for many different builds of the same package.
 
 See the
-[Feature Overview](https://spack.readthedocs.io/en/latest/features.html)
+[Feature Overview](http://software.llnl.gov/spack/features.html)
 for examples and highlights.
 
-To install spack and your first package, make sure you have Python.
-Then:
+To install spack and install your first package:
 
-    $ git clone -c feature.manyFiles=true https://github.com/spack/spack.git
+    $ git clone https://github.com/llnl/spack.git
     $ cd spack/bin
-    $ ./spack install zlib
+    $ ./spack install libelf
 
 Documentation
 ----------------
 
-[**Full documentation**](https://spack.readthedocs.io/) is available, or
-run `spack help` or `spack help --all`.
+[**Full documentation**](http://software.llnl.gov/spack) for Spack is
+the first place to look.
 
-For a cheat sheet on Spack syntax, run `spack help --spec`.
+See also:
+  * [Technical paper](http://www.computer.org/csdl/proceedings/sc/2015/3723/00/2807623.pdf) and
+    [slides](https://tgamblin.github.io/files/Gamblin-Spack-SC15-Talk.pdf) on Spack's design and implementation.
+  * [Short presentation](https://tgamblin.github.io/files/Gamblin-Spack-Lightning-Talk-BOF-SC15.pdf) from the *Getting Scientific Software Installed* BOF session at Supercomputing 2015.
 
-Tutorial
-----------------
 
-We maintain a
-[**hands-on tutorial**](https://spack.readthedocs.io/en/latest/tutorial.html).
-It covers basic to advanced usage, packaging, developer features, and large HPC
-deployments.  You can do all of the exercises on your own laptop using a
-Docker container.
-
-Feel free to use these materials to teach users at your organization
-about Spack.
-
-Community
+Get Involved!
 ------------------------
 
 Spack is an open source project.  Questions, discussion, and
 contributions are welcome. Contributions can be anything from new
-packages to bugfixes, documentation, or even new core features.
+packages to bugfixes, or even new core features.
 
-Resources:
+### Mailing list
 
-* **Slack workspace**: [spackpm.slack.com](https://spackpm.slack.com).
-  To get an invitation, visit [slack.spack.io](https://slack.spack.io).
-* **Mailing list**: [groups.google.com/d/forum/spack](https://groups.google.com/d/forum/spack)
-* **Twitter**: [@spackpm](https://twitter.com/spackpm). Be sure to
-  `@mention` us!
+If you are interested in contributing to spack, the first step is to
+join the mailing list.  We're using a Google Group for this, and you
+can join it here:
 
-Contributing
-------------------------
-Contributing to Spack is relatively easy.  Just send us a
-[pull request](https://help.github.com/articles/using-pull-requests/).
+  * [Spack Google Group](https://groups.google.com/d/forum/spack)
+
+### Contributions
+
+At the moment, contributing to Spack is relatively simple.  Just send us
+a [pull request](https://help.github.com/articles/using-pull-requests/).
 When you send your request, make ``develop`` the destination branch on the
-[Spack repository](https://github.com/spack/spack).
+[Spack repository](https://github.com/LLNL/spack).
 
-Your PR must pass Spack's unit tests and documentation tests, and must be
-[PEP 8](https://www.python.org/dev/peps/pep-0008/) compliant.  We enforce
-these guidelines with our CI process. To run these tests locally, and for
-helpful tips on git, see our
-[Contribution Guide](https://spack.readthedocs.io/en/latest/contribution_guide.html).
+Your contribution will need to pass all the tests run by the `spack test`
+command, as well as the formatting checks in `share/spack/qa/run-flake8`.
+You should run both of these before submitting your pull request, to
+ensure that the online checks succeed.
 
-Spack's `develop` branch has the latest contributions. Pull requests
-should target `develop`, and users who want the latest package versions,
-features, etc. can use `develop`.
+Spack is using a rough approximation of the [Git
+Flow](http://nvie.com/posts/a-successful-git-branching-model/)
+branching model.  The ``develop`` branch contains the latest
+contributions, and ``master`` is always tagged and points to the
+latest stable release.
 
-Releases
---------
-
-For multi-user site deployments or other use cases that need very stable
-software installations, we recommend using Spack's
-[stable releases](https://github.com/spack/spack/releases).
-
-Each Spack release series also has a corresponding branch, e.g.
-`releases/v0.14` has `0.14.x` versions of Spack, and `releases/v0.13` has
-`0.13.x` versions. We backport important bug fixes to these branches but
-we do not advance the package versions or make other changes that would
-change the way Spack concretizes dependencies within a release branch.
-So, you can base your Spack deployment on a release branch and `git pull`
-to get fixes, without the package churn that comes with `develop`.
-
-The latest release is always available with the `releases/latest` tag.
-
-See the [docs on releases](https://spack.readthedocs.io/en/latest/developer_guide.html#releases)
-for more details.
-
-Code of Conduct
-------------------------
-
-Please note that Spack has a
-[**Code of Conduct**](.github/CODE_OF_CONDUCT.md). By participating in
-the Spack community, you agree to abide by its rules.
 
 Authors
 ----------------
-Many thanks go to Spack's [contributors](https://github.com/spack/spack/graphs/contributors).
+Many thanks go to Spack's [contributors](https://github.com/llnl/spack/graphs/contributors).
 
-Spack was created by Todd Gamblin, tgamblin@llnl.gov.
+Spack was originally written by Todd Gamblin, tgamblin@llnl.gov.
 
 ### Citing Spack
 
@@ -122,24 +87,12 @@ If you are referencing Spack in a publication, please cite the following paper:
 
  * Todd Gamblin, Matthew P. LeGendre, Michael R. Collette, Gregory L. Lee,
    Adam Moody, Bronis R. de Supinski, and W. Scott Futral.
-   [**The Spack Package Manager: Bringing Order to HPC Software Chaos**](https://www.computer.org/csdl/proceedings/sc/2015/3723/00/2807623.pdf).
+   [**The Spack Package Manager: Bringing Order to HPC Software Chaos**](http://www.computer.org/csdl/proceedings/sc/2015/3723/00/2807623.pdf).
    In *Supercomputing 2015 (SC’15)*, Austin, Texas, November 15-20 2015. LLNL-CONF-669890.
 
-License
+Release
 ----------------
+Spack is released under an LGPL license.  For more details see the
+LICENSE file.
 
-Spack is distributed under the terms of both the MIT license and the
-Apache License (Version 2.0). Users may choose either license, at their
-option.
-
-All new contributions must be made under both the MIT and Apache-2.0
-licenses.
-
-See [LICENSE-MIT](https://github.com/spack/spack/blob/develop/LICENSE-MIT),
-[LICENSE-APACHE](https://github.com/spack/spack/blob/develop/LICENSE-APACHE),
-[COPYRIGHT](https://github.com/spack/spack/blob/develop/COPYRIGHT), and
-[NOTICE](https://github.com/spack/spack/blob/develop/NOTICE) for details.
-
-SPDX-License-Identifier: (Apache-2.0 OR MIT)
-
-LLNL-CODE-811652
+``LLNL-CODE-647188``

SECURITY.md

@@ -1,24 +0,0 @@
-# Security Policy
-
-## Supported Versions
-
-We provide security updates for the following releases.
-For more on Spack's release structure, see
-[`README.md`](https://github.com/spack/spack#releases).
-
-
-| Version | Supported          |
-| ------- | ------------------ |
-| develop | :white_check_mark: |
-| 0.16.x  | :white_check_mark: |
-
-## Reporting a Vulnerability
-
-To report a vulnerability or other security
-issue, email maintainers@spack.io.
-
-You can expect to hear back within two days.
-If your security issue is accepted, we will do
-our best to release a fix within a week. If
-fixing the issue will take longer than this,
-we will discuss timeline options with you.

bin/sbang

@@ -1,103 +1,108 @@
-#!/bin/sh
+#!/bin/bash
+##############################################################################
+# Copyright (c) 2013-2016, Lawrence Livermore National Security, LLC.
+# Produced at the Lawrence Livermore National Laboratory.
 #
-# Copyright 2013-2021 Lawrence Livermore National Security, LLC and other
-# sbang project developers. See the top-level COPYRIGHT file for details.
+# This file is part of Spack.
+# Created by Todd Gamblin, tgamblin@llnl.gov, All rights reserved.
+# LLNL-CODE-647188
 #
-# SPDX-License-Identifier: (Apache-2.0 OR MIT)
-
+# For details, see https://github.com/llnl/spack
+# Please also see the LICENSE file for our notice and the LGPL.
+#
+# This program is free software; you can redistribute it and/or modify
+# it under the terms of the GNU Lesser General Public License (as
+# published by the Free Software Foundation) version 2.1, February 1999.
+#
+# This program is distributed in the hope that it will be useful, but
+# WITHOUT ANY WARRANTY; without even the IMPLIED WARRANTY OF
+# MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the terms and
+# conditions of the GNU Lesser General Public License for more details.
+#
+# You should have received a copy of the GNU Lesser General Public
+# License along with this program; if not, write to the Free Software
+# Foundation, Inc., 59 Temple Place, Suite 330, Boston, MA 02111-1307 USA
+##############################################################################
 #
 # `sbang`: Run scripts with long shebang lines.
 #
-# Many operating systems limit the length and number of possible
-# arguments in shebang lines, making it hard to use interpreters that are
-# deep in the directory hierarchy or require special arguments.
+# Many operating systems limit the length of shebang lines, making it
+# hard to use interpreters that are deep in the directory hierarchy.
+# `sbang` can run such scripts, either as a shebang interpreter, or
+# directly on the command line.
 #
-# To use, put the long shebang on the second line of your script, and
-# make sbang the interpreter, like this:
+# Usage
+# -----------------------------
+# Suppose you have a script, long-shebang.sh, like this:
 #
-#     #!/bin/sh /path/to/sbang
-#     #!/long/path/to/real/interpreter with arguments
+#     1    #!/very/long/path/to/some/interpreter
+#     2
+#     3    echo "success!"
 #
-# `sbang` will run the real interpreter with the script as its argument.
+# Invoking this script will result in an error on some OS's.  On
+# Linux, you get this:
 #
-# See https://github.com/spack/sbang for more details.
+#     $ ./long-shebang.sh
+#     -bash: ./long: /very/long/path/to/some/interp: bad interpreter:
+#            No such file or directory
+#
+# On Mac OS X, the system simply assumes the interpreter is the shell
+# and tries to run with it, which is likely not what you want.
+#
+#
+# `sbang` on the command line
+# -----------------------------
+# You can use `sbang` in two ways.  The first is to use it directly,
+# from the command line, like this:
+#
+#     $ sbang ./long-shebang.sh
+#     success!
+#
+#
+# `sbang` as the interpreter
+# -----------------------------
+# You can also use `sbang` *as* the interpreter for your script. Put
+# `#!/bin/bash /path/to/sbang` on line 1, and move the original
+# shebang to line 2 of the script:
+#
+#     1    #!/bin/bash /path/to/sbang
+#     2    #!/long/path/to/real/interpreter with arguments
+#     3
+#     4    echo "success!"
+#
+#     $ ./long-shebang.sh
+#     success!
+#
+# On Linux, you could shorten line 1 to `#!/path/to/sbang`, but other
+# operating systems like Mac OS X require the interpreter to be a
+# binary, so it's best to use `sbang` as a `bash` argument.
+# Obviously, for this to work, `sbang` needs to have a short enough
+# path that *it* will run without hitting OS limits.
+#
+#
+# How it works
+# -----------------------------
+# `sbang` is a very simple bash script. It looks at the first two
+# lines of a script argument and runs the last line starting with
+# `#!`, with the script as an argument. It also forwards arguments.
 #
-
-# Generic error handling
-die() {
-    echo "$@" 1>&2;
-    exit 1
-}
-
-# set SBANG_DEBUG to make the script print what would normally be executed.
-exec="exec"
-if [ -n "${SBANG_DEBUG}" ]; then
-    exec="echo "
-fi
 
 # First argument is the script we want to actually run.
 script="$1"
 
-# ensure that the script actually exists
-if [ -z "$script" ]; then
-    die "error: sbang requires exactly one argument"
-elif [ ! -f "$script" ]; then
-    die "$script: no such file or directory"
-fi
-
 # Search the first two lines of script for interpreters.
 lines=0
-while read -r line && [ $lines -ne 2 ]; do
-    if [ "${line#\#!}" != "$line" ]; then
-        shebang_line="${line#\#!}"
-    elif [ "${line#//!}" != "$line" ]; then      # // comments
-        shebang_line="${line#//!}"
-    elif [ "${line#--!}" != "$line" ]; then      # -- lua comments
-        shebang_line="${line#--!}"
-    elif [ "${line#<?php\ }" != "$line" ]; then  # php comments
-        shebang_line="${line#<?php\ \#!}"
-        shebang_line="${shebang_line%\ ?>}"
+while read line && ((lines < 2)) ; do
+    if [[ "$line" = '#!'* ]]; then
+        interpreter="${line#\#!}"
     fi
     lines=$((lines+1))
 done < "$script"
 
-# error if we did not find any interpreter
-if [ -z "$shebang_line"  ]; then
-    die "error: sbang found no interpreter in $script"
-fi
-
-# parse out the interpreter and first argument
-IFS=' ' read -r interpreter arg1 rest <<EOF
-$shebang_line
-EOF
-
-# Determine if the interpreter is a particular program, accounting for the
-# '#!/usr/bin/env PROGRAM' convention. So:
-#
-#     interpreter_is perl
-#
-# will be true for '#!/usr/bin/perl' and '#!/usr/bin/env perl'
-interpreter_is() {
-    if [ "${interpreter##*/}" = "$1" ]; then
-        return 0
-    elif [ "$interpreter" = "/usr/bin/env" ] && [ "$arg1" = "$1" ]; then
-        return 0
-    else
-        return 1
-    fi
-}
-
-if interpreter_is "sbang"; then
-    die "error: refusing to re-execute sbang to avoid infinite loop."
-fi
-
-# Finally invoke the real shebang line
-# ruby and perl need -x to ignore the first line of input (the sbang line)
-#
-if interpreter_is perl || interpreter_is ruby; then
-    # shellcheck disable=SC2086
-    $exec $shebang_line -x "$@"
+# Invoke any interpreter found, or raise an error if none was found.
+if [ -n "$interpreter" ]; then
+    exec $interpreter "$@"
 else
-    # shellcheck disable=SC2086
-    $exec $shebang_line "$@"
+    echo "error: sbang found no interpreter in $script"
+    exit 1
 fi

bin/spack

@@ -1,100 +1,176 @@
-#!/bin/sh
-# -*- python -*-
+#!/usr/bin/env python
+##############################################################################
+# Copyright (c) 2013-2016, Lawrence Livermore National Security, LLC.
+# Produced at the Lawrence Livermore National Laboratory.
 #
-# Copyright 2013-2021 Lawrence Livermore National Security, LLC and other
-# Spack Project Developers. See the top-level COPYRIGHT file for details.
+# This file is part of Spack.
+# Created by Todd Gamblin, tgamblin@llnl.gov, All rights reserved.
+# LLNL-CODE-647188
 #
-# SPDX-License-Identifier: (Apache-2.0 OR MIT)
-
-# This file is bilingual. The following shell code finds our preferred python.
-# Following line is a shell no-op, and starts a multi-line Python comment.
-# See https://stackoverflow.com/a/47886254
-""":"
-# prefer SPACK_PYTHON environment variable, python3, python, then python2
-SPACK_PREFERRED_PYTHONS="python3 python python2 /usr/libexec/platform-python"
-for cmd in "${SPACK_PYTHON:-}" ${SPACK_PREFERRED_PYTHONS}; do
-    if command -v > /dev/null "$cmd"; then
-        export SPACK_PYTHON="$(command -v "$cmd")"
-        exec "${SPACK_PYTHON}" "$0" "$@"
-    fi
-done
-
-echo "==> Error: spack could not find a python interpreter!" >&2
-exit 1
-":"""
-# Line above is a shell no-op, and ends a python multi-line comment.
-# The code above runs this file with our preferred python interpreter.
-
-from __future__ import print_function
+# For details, see https://github.com/llnl/spack
+# Please also see the LICENSE file for our notice and the LGPL.
+#
+# This program is free software; you can redistribute it and/or modify
+# it under the terms of the GNU Lesser General Public License (as
+# published by the Free Software Foundation) version 2.1, February 1999.
+#
+# This program is distributed in the hope that it will be useful, but
+# WITHOUT ANY WARRANTY; without even the IMPLIED WARRANTY OF
+# MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the terms and
+# conditions of the GNU Lesser General Public License for more details.
+#
+# You should have received a copy of the GNU Lesser General Public
+# License along with this program; if not, write to the Free Software
+# Foundation, Inc., 59 Temple Place, Suite 330, Boston, MA 02111-1307 USA
+##############################################################################
+import sys
+if not sys.version_info[:2] >= (2,6):
+    v_info = sys.version_info[:3]
+    sys.exit("Spack requires Python 2.6 or higher.  This is Python %d.%d.%d." % v_info)
 
 import os
-import os.path
-import sys
-
-min_python3 = (3, 5)
-
-if sys.version_info[:2] < (2, 6) or (
-    sys.version_info[:2] >= (3, 0) and sys.version_info[:2] < min_python3
-):
-    v_info = sys.version_info[:3]
-    msg = "Spack requires Python 2.6, 2.7 or %d.%d or higher " % min_python3
-    msg += "You are running spack with Python %d.%d.%d." % v_info
-    sys.exit(msg)
 
 # Find spack's location and its prefix.
-spack_file = os.path.realpath(os.path.expanduser(__file__))
-spack_prefix = os.path.dirname(os.path.dirname(spack_file))
+SPACK_FILE = os.path.realpath(os.path.expanduser(__file__))
+os.environ["SPACK_FILE"] = SPACK_FILE
+SPACK_PREFIX = os.path.dirname(os.path.dirname(SPACK_FILE))
 
 # Allow spack libs to be imported in our scripts
-spack_lib_path = os.path.join(spack_prefix, "lib", "spack")
-sys.path.insert(0, spack_lib_path)
+SPACK_LIB_PATH = os.path.join(SPACK_PREFIX, "lib", "spack")
+sys.path.insert(0, SPACK_LIB_PATH)
+SPACK_EXTERNAL_LIBS = os.path.join(SPACK_LIB_PATH, "external")
+sys.path.insert(0, SPACK_EXTERNAL_LIBS)
 
-# Add external libs
-spack_external_libs = os.path.join(spack_lib_path, "external")
+import warnings
+# Avoid warnings when nose is installed with the python exe being used to run
+# spack. Note this must be done after Spack's external libs directory is added
+# to sys.path.
+with warnings.catch_warnings():
+    warnings.filterwarnings("ignore", ".*nose was already imported")
+    import nose
 
-if sys.version_info[:2] <= (2, 7):
-    sys.path.insert(0, os.path.join(spack_external_libs, "py2"))
-if sys.version_info[:2] == (2, 6):
-    sys.path.insert(0, os.path.join(spack_external_libs, "py26"))
-
-sys.path.insert(0, spack_external_libs)
-
-# Here we delete ruamel.yaml in case it has been already imported from site
-# (see #9206 for a broader description of the issue).
-#
-# Briefly: ruamel.yaml produces a .pth file when installed with pip that
-# makes the site installed package the preferred one, even though sys.path
-# is modified to point to another version of ruamel.yaml.
-if "ruamel.yaml" in sys.modules:
-    del sys.modules["ruamel.yaml"]
-
-if "ruamel" in sys.modules:
-    del sys.modules["ruamel"]
-
-# The following code is here to avoid failures when updating
-# the develop version, due to spurious argparse.pyc files remaining
-# in the libs/spack/external directory, see:
-# https://github.com/spack/spack/pull/25376
-# TODO: Remove in v0.18.0 or later
-try:
-    import argparse
-except ImportError:
-    argparse_pyc = os.path.join(spack_external_libs, 'argparse.pyc')
-    if not os.path.exists(argparse_pyc):
-        raise
+# Quick and dirty check to clean orphaned .pyc files left over from
+# previous revisions.  These files were present in earlier versions of
+# Spack, were removed, but shadow system modules that Spack still
+# imports.  If we leave them, Spack will fail in mysterious ways.
+# TODO: more elegant solution for orphaned pyc files.
+orphaned_pyc_files = [os.path.join(SPACK_EXTERNAL_LIBS, n)
+                      for n in ('functools.pyc', 'ordereddict.pyc')]
+for pyc_file in orphaned_pyc_files:
+    if not os.path.exists(pyc_file):
+        continue
     try:
-        os.remove(argparse_pyc)
-        import argparse  # noqa
-    except Exception:
-        msg = ('The file\n\n\t{0}\n\nis corrupted and cannot be deleted by Spack. '
-               'Either delete it manually or ask some administrator to '
-               'delete it for you.')
-        print(msg.format(argparse_pyc))
-        sys.exit(1)
+        os.remove(pyc_file)
+    except OSError as e:
+        print "WARNING: Spack may fail mysteriously. Couldn't remove orphaned .pyc file: %s" % pyc_file
 
+# If there is no working directory, use the spack prefix.
+try:
+    working_dir = os.getcwd()
+except OSError:
+    os.chdir(SPACK_PREFIX)
+    working_dir = SPACK_PREFIX
 
-import spack.main  # noqa
+# clean up the scope and start using spack package instead.
+del SPACK_FILE, SPACK_PREFIX, SPACK_LIB_PATH
+import llnl.util.tty as tty
+from llnl.util.tty.color import *
+import spack
+from spack.error import SpackError
+from external import argparse
 
-# Once we've set up the system path, run the spack main method
-if __name__ == "__main__":
-    sys.exit(spack.main.main())
+# Command parsing
+parser = argparse.ArgumentParser(
+    formatter_class=argparse.RawTextHelpFormatter,
+    description="Spack: the Supercomputing PACKage Manager." + colorize("""
+
+spec expressions:
+  PACKAGE [CONSTRAINTS]
+
+    CONSTRAINTS:
+      @c{@version}
+      @g{%compiler  @compiler_version}
+      @B{+variant}
+      @r{-variant} or @r{~variant}
+      @m{=architecture}
+      [^DEPENDENCY [CONSTRAINTS] ...]"""))
+
+parser.add_argument('-d', '--debug', action='store_true',
+                    help="Write out debug logs during compile")
+parser.add_argument('-D', '--pdb', action='store_true',
+                    help="Run spack under the pdb debugger")
+parser.add_argument('-k', '--insecure', action='store_true',
+                    help="Do not check ssl certificates when downloading.")
+parser.add_argument('-m', '--mock', action='store_true',
+                    help="Use mock packages instead of real ones.")
+parser.add_argument('-p', '--profile', action='store_true',
+                    help="Profile execution using cProfile.")
+parser.add_argument('-v', '--verbose', action='store_true',
+                    help="Print additional output during builds")
+parser.add_argument('-V', '--version', action='version',
+                    version="%s" % spack.spack_version)
+
+# each command module implements a parser() function, to which we pass its
+# subparser for setup.
+subparsers = parser.add_subparsers(metavar='SUBCOMMAND', dest="command")
+
+import spack.cmd
+for cmd in spack.cmd.commands:
+    module = spack.cmd.get_module(cmd)
+    subparser = subparsers.add_parser(cmd, help=module.description)
+    module.setup_parser(subparser)
+
+# Just print help and exit if run with no arguments at all
+if len(sys.argv) == 1:
+    parser.print_help()
+    sys.exit(1)
+
+# actually parse the args.
+args = parser.parse_args()
+
+def main():
+    # Set up environment based on args.
+    tty.set_verbose(args.verbose)
+    tty.set_debug(args.debug)
+    spack.debug = args.debug
+
+    if spack.debug:
+        import spack.util.debug as debug
+        debug.register_interrupt_handler()
+
+    spack.spack_working_dir = working_dir
+    if args.mock:
+        from spack.repository import RepoPath
+        spack.repo.swap(RepoPath(spack.mock_packages_path))
+
+    # If the user asked for it, don't check ssl certs.
+    if args.insecure:
+        tty.warn("You asked for --insecure, which does not check SSL certificates.")
+        spack.curl.add_default_arg('-k')
+
+    # Try to load the particular command asked for and run it
+    command = spack.cmd.get_command(args.command)
+    try:
+        return_val = command(parser, args)
+    except SpackError as e:
+        e.die()
+    except KeyboardInterrupt:
+        sys.stderr.write('\n')
+        tty.die("Keyboard interrupt.")
+
+    # Allow commands to return values if they want to exit with some other code.
+    if return_val is None:
+        sys.exit(0)
+    elif isinstance(return_val, int):
+        sys.exit(return_val)
+    else:
+        tty.die("Bad return value from command %s: %s" % (args.command, return_val))
+
+if args.profile:
+    import cProfile
+    cProfile.run('main()', sort='tottime')
+elif args.pdb:
+    import pdb
+    pdb.run('main()')
+else:
+    main()

bin/spack-python

@@ -1,10 +1,28 @@
 #!/bin/sh
+##############################################################################
+# Copyright (c) 2013-2016, Lawrence Livermore National Security, LLC.
+# Produced at the Lawrence Livermore National Laboratory.
 #
-# Copyright 2013-2021 Lawrence Livermore National Security, LLC and other
-# Spack Project Developers. See the top-level COPYRIGHT file for details.
+# This file is part of Spack.
+# Created by Todd Gamblin, tgamblin@llnl.gov, All rights reserved.
+# LLNL-CODE-647188
 #
-# SPDX-License-Identifier: (Apache-2.0 OR MIT)
-
+# For details, see https://github.com/llnl/spack
+# Please also see the LICENSE file for our notice and the LGPL.
+#
+# This program is free software; you can redistribute it and/or modify
+# it under the terms of the GNU Lesser General Public License (as
+# published by the Free Software Foundation) version 2.1, February 1999.
+#
+# This program is distributed in the hope that it will be useful, but
+# WITHOUT ANY WARRANTY; without even the IMPLIED WARRANTY OF
+# MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the terms and
+# conditions of the GNU Lesser General Public License for more details.
+#
+# You should have received a copy of the GNU Lesser General Public
+# License along with this program; if not, write to the Free Software
+# Foundation, Inc., 59 Temple Place, Suite 330, Boston, MA 02111-1307 USA
+##############################################################################
 #
 # spack-python
 #
@@ -22,4 +40,4 @@
 #
 # This is compatible across platforms.
 #
-exec /usr/bin/env spack python "$@"
+/usr/bin/env spack python "$@"

etc/spack/defaults/bootstrap.yaml

@@ -1,32 +0,0 @@
-bootstrap:
-  # If set to false Spack will not bootstrap missing software,
-  # but will instead raise an error.
-  enable: true
-  # Root directory for bootstrapping work. The software bootstrapped
-  # by Spack is installed in a "store" subfolder of this root directory
-  root: $user_cache_path/bootstrap
-  # Methods that can be used to bootstrap software. Each method may or
-  # may not be able to bootstrap all of the software that Spack needs,
-  # depending on its type.
-  sources:
-  - name: 'github-actions'
-    type: buildcache
-    description: |
-      Buildcache generated from a public workflow using Github Actions.
-      The sha256 checksum of binaries is checked before installation.
-    info:
-      url: https://mirror.spack.io/bootstrap/github-actions/v0.1
-      homepage: https://github.com/alalazo/spack-bootstrap-mirrors
-      releases: https://github.com/alalazo/spack-bootstrap-mirrors/releases
-  # This method is just Spack bootstrapping the software it needs from sources.
-  # It has been added here so that users can selectively disable bootstrapping
-  # from sources by "untrusting" it.
-  - name: spack-install
-    type: install
-    description: |
-      Specs built from sources by Spack. May take a long time.
-  trusted:
-    # By default we trust bootstrapping from sources and from binaries
-    # produced on Github via the workflow
-    github-actions: true
-    spack-install: true

etc/spack/defaults/config.yaml

@@ -1,197 +0,0 @@
-# -------------------------------------------------------------------------
-# This is the default spack configuration file.
-#
-# Settings here are versioned with Spack and are intended to provide
-# sensible defaults out of the box. Spack maintainers should edit this
-# file to keep it current.
-#
-# Users can override these settings by editing the following files.
-#
-# Per-spack-instance settings (overrides defaults):
-#   $SPACK_ROOT/etc/spack/config.yaml
-#
-# Per-user settings (overrides default and site settings):
-#   ~/.spack/config.yaml
-# -------------------------------------------------------------------------
-config:
-  # This is the path to the root of the Spack install tree.
-  # You can use $spack here to refer to the root of the spack instance.
-  install_tree:
-    root: $spack/opt/spack
-    projections:
-      all: "${ARCHITECTURE}/${COMPILERNAME}-${COMPILERVER}/${PACKAGE}-${VERSION}-${HASH}"
-    # install_tree can include an optional padded length (int or boolean)
-    # default is False (do not pad)
-    # if padded_length is True, Spack will pad as close to the system max path
-    # length as possible
-    # if padded_length is an integer, Spack will pad to that many characters,
-    # assuming it is higher than the length of the install_tree root.
-    # padded_length: 128
-
-
-  # Locations where templates should be found
-  template_dirs:
-    - $spack/share/spack/templates
-
-  # Temporary locations Spack can try to use for builds.
-  #
-  # Recommended options are given below.
-  #
-  # Builds can be faster in temporary directories on some (e.g., HPC) systems.
-  # Specifying `$tempdir` will ensure use of the default temporary directory
-  # (i.e., ``$TMP` or ``$TMPDIR``).
-  #
-  # Another option that prevents conflicts and potential permission issues is
-  # to specify `$user_cache_path/stage`, which ensures each user builds in their
-  # home directory.
-  #
-  # A more traditional path uses the value of `$spack/var/spack/stage`, which
-  # builds directly inside Spack's instance without staging them in a
-  # temporary space.  Problems with specifying a path inside a Spack instance
-  # are that it precludes its use as a system package and its ability to be
-  # pip installable.
-  #
-  # In any case, if the username is not already in the path, Spack will append
-  # the value of `$user` in an attempt to avoid potential conflicts between
-  # users in shared temporary spaces.
-  #
-  # The build stage can be purged with `spack clean --stage` and
-  # `spack clean -a`, so it is important that the specified directory uniquely
-  # identifies Spack staging to avoid accidentally wiping out non-Spack work.
-  build_stage:
-    - $tempdir/$user/spack-stage
-    - $user_cache_path/stage
-  # - $spack/var/spack/stage
-
-  # Directory in which to run tests and store test results.
-  # Tests will be stored in directories named by date/time and package
-  # name/hash.
-  test_stage: $user_cache_path/test
-
-  # Cache directory for already downloaded source tarballs and archived
-  # repositories. This can be purged with `spack clean --downloads`.
-  source_cache: $spack/var/spack/cache
-
-
-  # Cache directory for miscellaneous files, like the package index.
-  # This can be purged with `spack clean --misc-cache`
-  misc_cache: $user_cache_path/cache
-
-
-  # Timeout in seconds used for downloading sources etc. This only applies
-  # to the connection phase and can be increased for slow connections or
-  # servers. 0 means no timeout.
-  connect_timeout: 10
-
-
-  # If this is false, tools like curl that use SSL will not verify
-  # certifiates. (e.g., curl will use use the -k option)
-  verify_ssl: true
-
-
-  # Suppress gpg warnings from binary package verification
-  # Only suppresses warnings, gpg failure will still fail the install
-  # Potential rationale to set True: users have already explicitly trusted the
-  # gpg key they are using, and may not want to see repeated warnings that it
-  # is self-signed or something of the sort.
-  suppress_gpg_warnings: false
-
-
-  # If set to true, Spack will attempt to build any compiler on the spec
-  # that is not already available. If set to False, Spack will only use
-  # compilers already configured in compilers.yaml
-  install_missing_compilers: false
-
-
-  # If set to true, Spack will always check checksums after downloading
-  # archives. If false, Spack skips the checksum step.
-  checksum: true
-
-
-  # If set to true, Spack will fetch deprecated versions without warning.
-  # If false, Spack will raise an error when trying to install a deprecated version.
-  deprecated: false
-
-
-  # If set to true, `spack install` and friends will NOT clean
-  # potentially harmful variables from the build environment. Use wisely.
-  dirty: false
-
-
-  # The language the build environment will use. This will produce English
-  # compiler messages by default, so the log parser can highlight errors.
-  # If set to C, it will use English (see man locale).
-  # If set to the empty string (''), it will use the language from the
-  # user's environment.
-  build_language: C
-
-
-  # When set to true, concurrent instances of Spack will use locks to
-  # avoid modifying the install tree, database file, etc. If false, Spack
-  # will disable all locking, but you must NOT run concurrent instances
-  # of Spack.  For filesystems that don't support locking, you should set
-  # this to false and run one Spack at a time, but otherwise we recommend
-  # enabling locks.
-  locks: true
-
-  # The default url fetch method to use.
-  # If set to 'curl', Spack will require curl on the user's system
-  # If set to 'urllib', Spack will use python built-in libs to fetch
-  url_fetch_method: urllib
-
-  # The maximum number of jobs to use for the build system (e.g. `make`), when
-  # the -j flag is not given on the command line. Defaults to 16 when not set.
-  # Note that the maximum number of jobs is limited by the number of cores
-  # available, taking thread affinity into account when supported. For instance:
-  # - With `build_jobs: 16` and 4 cores available `spack install` will run `make -j4`
-  # - With `build_jobs: 16` and 32 cores available `spack install` will run `make -j16`
-  # - With `build_jobs: 2` and 4 cores available `spack install -j6` will run `make -j6`
-  # build_jobs: 16
-
-
-  # If set to true, Spack will use ccache to cache C compiles.
-  ccache: false
-
-
-  # The concretization algorithm to use in Spack. Options are:
-  #
-  #   'original': Spack's original greedy, fixed-point concretizer. This
-  #       algorithm can make decisions too early and will not backtrack
-  #       sufficiently for many specs.
-  #
-  #   'clingo': Uses a logic solver under the hood to solve DAGs with full
-  #       backtracking and optimization for user preferences. Spack will
-  #       try to bootstrap the logic solver, if not already available.
-  #
-  concretizer: clingo
-
-
-  # How long to wait to lock the Spack installation database. This lock is used
-  # when Spack needs to manage its own package metadata and all operations are
-  # expected to complete within the default time limit. The timeout should
-  # therefore generally be left untouched.
-  db_lock_timeout: 3
-
-
-  # How long to wait when attempting to modify a package (e.g. to install it).
-  # This value should typically be 'null' (never time out) unless the Spack
-  # instance only ever has a single user at a time, and only if the user
-  # anticipates that a significant delay indicates that the lock attempt will
-  # never succeed.
-  package_lock_timeout: null
-
-
-  # Control whether Spack embeds RPATH or RUNPATH attributes in ELF binaries.
-  # Has no effect on macOS. DO NOT MIX these within the same install tree.
-  # See the Spack documentation for details.
-  shared_linking: 'rpath'
-
-
-  # Set to 'false' to allow installation on filesystems that doesn't allow setgid bit
-  # manipulation by unprivileged user (e.g. AFS)
-  allow_sgid: true
-
-  # Whether to set the terminal title to display status information during
-  # building and installing packages. This gives information about Spack's
-  # current progress as well as the current and total number of packages.
-  terminal_title: false

etc/spack/defaults/cray/modules.yaml

@@ -1,21 +0,0 @@
-# -------------------------------------------------------------------------
-# This is the default configuration for Spack's module file generation.
-#
-# Settings here are versioned with Spack and are intended to provide
-# sensible defaults out of the box. Spack maintainers should edit this
-# file to keep it current.
-#
-# Users can override these settings by editing the following files.
-#
-# Per-spack-instance settings (overrides defaults):
-#   $SPACK_ROOT/etc/spack/modules.yaml
-#
-# Per-user settings (overrides default and site settings):
-#   ~/.spack/modules.yaml
-# -------------------------------------------------------------------------
-modules:
-  prefix_inspections:
-    lib:
-      - LD_LIBRARY_PATH
-    lib64:
-      - LD_LIBRARY_PATH

etc/spack/defaults/darwin/modules.yaml

@@ -1,21 +0,0 @@
-# -------------------------------------------------------------------------
-# This is the default configuration for Spack's module file generation.
-#
-# Settings here are versioned with Spack and are intended to provide
-# sensible defaults out of the box. Spack maintainers should edit this
-# file to keep it current.
-#
-# Users can override these settings by editing the following files.
-#
-# Per-spack-instance settings (overrides defaults):
-#   $SPACK_ROOT/etc/spack/modules.yaml
-#
-# Per-user settings (overrides default and site settings):
-#   ~/.spack/modules.yaml
-# -------------------------------------------------------------------------
-modules:
-  prefix_inspections:
-    lib:
-      - DYLD_FALLBACK_LIBRARY_PATH
-    lib64:
-      - DYLD_FALLBACK_LIBRARY_PATH

etc/spack/defaults/darwin/packages.yaml

@@ -1,41 +0,0 @@
-# -------------------------------------------------------------------------
-# This file controls default concretization preferences for Spack.
-#
-# Settings here are versioned with Spack and are intended to provide
-# sensible defaults out of the box. Spack maintainers should edit this
-# file to keep it current.
-#
-# Users can override these settings by editing the following files.
-#
-# Per-spack-instance settings (overrides defaults):
-#   $SPACK_ROOT/etc/spack/packages.yaml
-#
-# Per-user settings (overrides default and site settings):
-#   ~/.spack/packages.yaml
-# -------------------------------------------------------------------------
-packages:
-  all:
-    compiler:
-    - apple-clang
-    - clang
-    - gcc
-    - intel
-    providers:
-      elf: [libelf]
-      fuse: [macfuse]
-      unwind: [apple-libunwind]
-      uuid: [apple-libuuid]
-  apple-libunwind:
-    buildable: false
-    externals:
-    # Apple bundles libunwind version 35.3 with macOS 10.9 and later,
-    # although the version number used here isn't critical
-    - spec: apple-libunwind@35.3
-      prefix: /usr
-  apple-libuuid:
-    buildable: false
-    externals:
-    # Apple bundles libuuid in libsystem_c version 1353.100.2,
-    # although the version number used here isn't critical
-    - spec: apple-libuuid@1353.100.2
-      prefix: /Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX.sdk

etc/spack/defaults/linux/modules.yaml

@@ -1,21 +0,0 @@
-# -------------------------------------------------------------------------
-# This is the default configuration for Spack's module file generation.
-#
-# Settings here are versioned with Spack and are intended to provide
-# sensible defaults out of the box. Spack maintainers should edit this
-# file to keep it current.
-#
-# Users can override these settings by editing the following files.
-#
-# Per-spack-instance settings (overrides defaults):
-#   $SPACK_ROOT/etc/spack/modules.yaml
-#
-# Per-user settings (overrides default and site settings):
-#   ~/.spack/modules.yaml
-# -------------------------------------------------------------------------
-modules:
-  prefix_inspections:
-    lib:
-      - LD_LIBRARY_PATH
-    lib64:
-      - LD_LIBRARY_PATH

etc/spack/defaults/mirrors.yaml

@@ -1,2 +0,0 @@
-mirrors:
-  spack-public: https://mirror.spack.io

etc/spack/defaults/modules.yaml

@@ -1,52 +0,0 @@
-# -------------------------------------------------------------------------
-# This is the default configuration for Spack's module file generation.
-#
-# Settings here are versioned with Spack and are intended to provide
-# sensible defaults out of the box. Spack maintainers should edit this
-# file to keep it current.
-#
-# Users can override these settings by editing the following files.
-#
-# Per-spack-instance settings (overrides defaults):
-#   $SPACK_ROOT/etc/spack/modules.yaml
-#
-# Per-user settings (overrides default and site settings):
-#   ~/.spack/modules.yaml
-# -------------------------------------------------------------------------
-modules:
-  # Paths to check when creating modules for all module sets
-  prefix_inspections:
-    bin:
-      - PATH
-    man:
-      - MANPATH
-    share/man:
-      - MANPATH
-    share/aclocal:
-      - ACLOCAL_PATH
-    lib/pkgconfig:
-      - PKG_CONFIG_PATH
-    lib64/pkgconfig:
-      - PKG_CONFIG_PATH
-    share/pkgconfig:
-      - PKG_CONFIG_PATH
-    '':
-      - CMAKE_PREFIX_PATH
-
-  # These are configurations for the module set named "default"
-  default:
-    # These values are defaulted in the code. They are not defaulted here so
-    # that we can enable backwards compatibility with the old syntax more
-    # easily (old value is in the config yaml, config:module_roots)
-    # Where to install modules
-    # roots:
-    #  tcl:    $spack/share/spack/modules
-    #  lmod:   $spack/share/spack/lmod
-    # What type of modules to use
-    enable:
-      - tcl
-
-    # Default configurations if lmod is enabled
-    lmod:
-      hierarchy:
-        - mpi

etc/spack/defaults/packages.yaml

@@ -1,61 +0,0 @@
-# -------------------------------------------------------------------------
-# This file controls default concretization preferences for Spack.
-#
-# Settings here are versioned with Spack and are intended to provide
-# sensible defaults out of the box. Spack maintainers should edit this
-# file to keep it current.
-#
-# Users can override these settings by editing the following files.
-#
-# Per-spack-instance settings (overrides defaults):
-#   $SPACK_ROOT/etc/spack/packages.yaml
-#
-# Per-user settings (overrides default and site settings):
-#   ~/.spack/packages.yaml
-# -------------------------------------------------------------------------
-packages:
-  all:
-    compiler: [gcc, intel, pgi, clang, xl, nag, fj, aocc]
-    providers:
-      awk: [gawk]
-      blas: [openblas, amdblis]
-      D: [ldc]
-      daal: [intel-daal]
-      elf: [elfutils]
-      fftw-api: [fftw, amdfftw]
-      flame: [libflame, amdlibflame]
-      fuse: [libfuse]
-      gl: [mesa+opengl, mesa18, opengl]
-      glu: [mesa-glu, openglu]
-      glx: [mesa+glx, mesa18+glx, opengl]
-      golang: [gcc]
-      iconv: [libiconv]
-      ipp: [intel-ipp]
-      java: [openjdk, jdk, ibm-java]
-      jpeg: [libjpeg-turbo, libjpeg]
-      lapack: [openblas, amdlibflame]
-      lua-lang: [lua, lua-luajit]
-      mariadb-client: [mariadb-c-client, mariadb]
-      mkl: [intel-mkl]
-      mpe: [mpe2]
-      mpi: [openmpi, mpich]
-      mysql-client: [mysql, mariadb-c-client]
-      opencl: [pocl]
-      onedal: [intel-oneapi-dal]
-      osmesa: [mesa+osmesa, mesa18+osmesa]
-      pbs: [openpbs, torque]
-      pil: [py-pillow]
-      pkgconfig: [pkgconf, pkg-config]
-      rpc: [libtirpc]
-      scalapack: [netlib-scalapack, amdscalapack]
-      sycl: [hipsycl]
-      szip: [libaec, libszip]
-      tbb: [intel-tbb]
-      unwind: [libunwind]
-      uuid: [util-linux-uuid, libuuid]
-      xxd: [xxd-standalone, vim]
-      yacc: [bison, byacc]
-      ziglang: [zig]
-    permissions:
-      read: world
-      write: user

etc/spack/defaults/repos.yaml

@@ -1,14 +0,0 @@
-# -------------------------------------------------------------------------
-# This is the default spack repository configuration. It includes the
-# builtin spack package repository.
-#
-# Users can override these settings by editing the following files.
-#
-# Per-spack-instance settings (overrides defaults):
-#   $SPACK_ROOT/etc/spack/repos.yaml
-#
-# Per-user settings (overrides default and site settings):
-#   ~/.spack/repos.yaml
-# -------------------------------------------------------------------------
-repos:
-  - $spack/var/spack/repos/builtin

etc/spack/modules.yaml

@@ -0,0 +1,29 @@
+# -------------------------------------------------------------------------
+# This is the default spack module files generation configuration.
+#
+# Changes to this file will affect all users of this spack install,
+# although users can override these settings in their ~/.spack/modules.yaml.
+# -------------------------------------------------------------------------
+modules:
+  enable:
+    - tcl
+    - dotkit
+  prefix_inspections:
+    bin:
+      - PATH
+    man:
+      - MANPATH
+    lib:
+      - LIBRARY_PATH
+      - LD_LIBRARY_PATH
+    lib64:
+      - LIBRARY_PATH
+      - LD_LIBRARY_PATH
+    include:
+      - CPATH
+    lib/pkgconfig:
+      - PKGCONFIG
+    lib64/pkgconfig:
+      - PKGCONFIG
+    '':
+      - CMAKE_PREFIX_PATH

etc/spack/repos.yaml

@@ -0,0 +1,8 @@
+# -------------------------------------------------------------------------
+# This is the default spack repository configuration.
+#
+# Changes to this file will affect all users of this spack install,
+# although users can override these settings in their ~/.spack/repos.yaml.
+# -------------------------------------------------------------------------
+repos:
+  - $spack/var/spack/repos/builtin

lib/spack/docs/.gitignore

@@ -1,7 +1,4 @@
-package_list.html
+package_list.rst
 command_index.rst
 spack*.rst
-llnl*.rst
 _build
-.spack-env
-spack.lock

lib/spack/docs/Makefile

@@ -2,13 +2,13 @@
 #
 
 # You can set these variables from the command line.
-SPHINXOPTS    = -W --keep-going
+SPHINXOPTS    =
 SPHINXBUILD   = sphinx-build
 PAPER         =
 BUILDDIR      = _build
 
-export PYTHONPATH := ../../spack:$(PYTHONPATH)
-APIDOC_FILES  = spack*.rst llnl*.rst
+export PYTHONPATH = ../../spack
+APIDOC_FILES  = spack*.rst
 
 # Internal variables.
 PAPEROPT_a4     = -D latex_paper_size=a4
@@ -17,10 +17,28 @@ ALLSPHINXOPTS   = -d $(BUILDDIR)/doctrees $(PAPEROPT_$(PAPER)) $(SPHINXOPTS) .
 # the i18n builder cannot share the environment and doctrees with the others
 I18NSPHINXOPTS  = $(PAPEROPT_$(PAPER)) $(SPHINXOPTS) .
 
-.PHONY: help clean html dirhtml singlehtml pickle json htmlhelp qthelp devhelp epub latex latexpdf text man changes linkcheck doctest gettext apidoc dashdoc
+.PHONY: help clean html dirhtml singlehtml pickle json htmlhelp qthelp devhelp epub latex latexpdf text man changes linkcheck doctest gettext apidoc
 
 all: html
 
+#
+# This autogenerates a package list.
+#
+package_list:
+	spack package-list > package_list.rst
+
+#
+# Generate a command index
+#
+command_index:
+	cp command_index.in command_index.rst
+	echo >> command_index.rst
+	grep -ho '.. _spack-.*:' *rst \
+	| perl -pe 's/.. _([^:]*):/   * :ref:`\1`/' \
+	| sort >> command_index.rst
+
+custom_targets: package_list command_index
+
 #
 # This creates a git repository and commits generated html docs.
 # It them pushes the new branch into THIS repository as gh-pages.
@@ -40,25 +58,13 @@ gh-pages: _build/html
 	git push -f $$root master:gh-pages && \
 	rm -rf .git
 
-# This version makes gh-pages into a single page that redirects
-# to spack.readthedocs.io
-gh-pages-redirect:
-	root="$$(git rev-parse --show-toplevel)" && \
-	cd _gh_pages_redirect && \
-	rm -rf .git && \
-	git init && \
-	git add . && \
-	git commit -m "Spack Documentation" && \
-	git push -f $$root master:gh-pages && \
-	rm -rf .git
-
 upload:
 	rsync -avz --rsh=ssh --delete _build/html/ cab:/usr/global/web-pages/lc/www/adept/docs/spack
+	git push -f origin gh-pages
 	git push -f github gh-pages
 
 apidoc:
-	sphinx-apidoc -f -T -o . ../spack
-	sphinx-apidoc -f -T -o . ../llnl
+	sphinx-apidoc -T -o . $(PYTHONPATH)/spack
 
 help:
 	@echo "Please use \`make <target>' where <target> is one of"
@@ -83,10 +89,10 @@ help:
 	@echo "  doctest    to run all doctests embedded in the documentation (if enabled)"
 
 clean:
-	-rm -f command_index.rst
+	-rm -f package_list.rst command_index.rst
 	-rm -rf $(BUILDDIR)/* $(APIDOC_FILES)
 
-html:
+html: apidoc custom_targets
 	$(SPHINXBUILD) -b html $(ALLSPHINXOPTS) $(BUILDDIR)/html
 	@echo
 	@echo "Build finished. The HTML pages are in $(BUILDDIR)/html."
@@ -196,9 +202,3 @@ doctest:
 	$(SPHINXBUILD) -b doctest $(ALLSPHINXOPTS) $(BUILDDIR)/doctest
 	@echo "Testing of doctests in the sources finished, look at the " \
 	      "results in $(BUILDDIR)/doctest/output.txt."
-
-dashdoc:
-	$(SPHINXBUILD) -b html $(ALLSPHINXOPTS) $(BUILDDIR)/dashdoc
-	doc2dash -A -v -n spack -d $(BUILDDIR)/ -f -I index.html -j $(BUILDDIR)/dashdoc
-	@echo
-	@echo "Build finished. The Docset is in $(BUILDDIR)/dashdoc."

lib/spack/docs/_gh_pages_redirect/index.html

@@ -1,10 +0,0 @@
-<html>
-  <head>
-    <meta http-equiv="refresh" content="0; url=https://spack.readthedocs.io/" />
-  </head>
-  <body>
-    <p>
-      This page has moved to <a href="https://spack.readthedocs.io/">https://spack.readthedocs.io/</a>
-    </p>
-  </body>
-</html>

lib/spack/docs/_spack_root

@@ -1 +0,0 @@
-../../..

lib/spack/docs/_themes/sphinx_rtd_theme/__init__.py

@@ -0,0 +1,17 @@
+"""Sphinx ReadTheDocs theme.
+
+From https://github.com/ryan-roemer/sphinx-bootstrap-theme.
+
+"""
+import os
+
+VERSION = (0, 1, 8)
+
+__version__ = ".".join(str(v) for v in VERSION)
+__version_full__ = __version__
+
+
+def get_html_theme_path():
+    """Return list of HTML theme paths."""
+    cur_dir = os.path.abspath(os.path.dirname(os.path.dirname(__file__)))
+    return cur_dir

lib/spack/docs/_themes/sphinx_rtd_theme/breadcrumbs.html

@@ -0,0 +1,23 @@
+<div role="navigation" aria-label="breadcrumbs navigation">
+  <ul class="wy-breadcrumbs">
+    <li><a href="{{ pathto(master_doc) }}">Docs</a> &raquo;</li>
+      {% for doc in parents %}
+          <li><a href="{{ doc.link|e }}">{{ doc.title }}</a> &raquo;</li>
+      {% endfor %}
+    <li>{{ title }}</li>
+      <li class="wy-breadcrumbs-aside">
+        {% if pagename != "search" %}
+          {% if display_github %}
+            <a href="https://{{ github_host|default("github.com") }}/{{ github_user }}/{{ github_repo }}/blob/{{ github_version }}{{ conf_py_path }}{{ pagename }}{{ source_suffix }}" class="fa fa-github"> Edit on GitHub</a>
+          {% elif display_bitbucket %}
+            <a href="https://bitbucket.org/{{ bitbucket_user }}/{{ bitbucket_repo }}/src/{{ bitbucket_version}}{{ conf_py_path }}{{ pagename }}{{ source_suffix }}" class="fa fa-bitbucket"> Edit on Bitbucket</a>
+          {% elif show_source and source_url_prefix %}
+            <a href="{{ source_url_prefix }}{{ pagename }}{{ source_suffix }}">View page source</a>
+          {% elif show_source and has_source and sourcename %}
+            <a href="{{ pathto('_sources/' + sourcename, true)|e }}" rel="nofollow"> View page source</a>
+          {% endif %}
+        {% endif %}
+      </li>
+  </ul>
+  <hr/>
+</div>

lib/spack/docs/_themes/sphinx_rtd_theme/footer.html

@@ -0,0 +1,40 @@
+<footer>
+  {% if next or prev %}
+    <div class="rst-footer-buttons" role="navigation" aria-label="footer navigation">
+      {% if next %}
+        <a href="{{ next.link|e }}" class="btn btn-neutral float-right" title="{{ next.title|striptags|e }}" accesskey="n">Next <span class="fa fa-arrow-circle-right"></span></a>
+      {% endif %}
+      {% if prev %}
+        <a href="{{ prev.link|e }}" class="btn btn-neutral" title="{{ prev.title|striptags|e }}" accesskey="p"><span class="fa fa-arrow-circle-left"></span> Previous</a>
+      {% endif %}
+    </div>
+  {% endif %}
+
+  <hr/>
+
+  <div role="contentinfo">
+    <p>
+    {%- if show_copyright %}
+      {%- if hasdoc('copyright') %}
+        {% trans path=pathto('copyright'), copyright=copyright|e %}&copy; <a href="{{ path }}">Copyright</a> {{ copyright }}.{% endtrans %}
+      {%- else %}
+        {% trans copyright=copyright|e %}&copy; Copyright {{ copyright }}.{% endtrans %}
+      {%- endif %}
+    {%- endif %}
+
+    <br/>
+    Written by Todd Gamblin (<a href="mailto:tgamblin@llnl.gov">tgamblin@llnl.gov</a>) and
+    many contributors. LLNL-CODE-647188.
+
+    {%- if last_updated %}
+      <br/>
+      {% trans last_updated=last_updated|e %}Last updated on {{ last_updated }}.{% endtrans %}
+    {%- endif %}
+    </p>
+  </div>
+
+  {%- if show_sphinx %}
+  {% trans %}Built with <a href="http://sphinx-doc.org/">Sphinx</a> using a <a href="https://github.com/snide/sphinx_rtd_theme">theme</a> provided by <a href="https://readthedocs.org">Read the Docs</a>{% endtrans %}.
+  {%- endif %}
+
+</footer>

lib/spack/docs/_themes/sphinx_rtd_theme/layout.html

@@ -0,0 +1,181 @@
+{# TEMPLATE VAR SETTINGS #}
+{%- set url_root = pathto('', 1) %}
+{%- if url_root == '#' %}{% set url_root = '' %}{% endif %}
+{%- if not embedded and docstitle %}
+  {%- set titlesuffix = " — "|safe + docstitle|e %}
+{%- else %}
+  {%- set titlesuffix = "" %}
+{%- endif %}
+
+<!DOCTYPE html>
+<!--[if IE 8]><html class="no-js lt-ie9" lang="en" > <![endif]-->
+<!--[if gt IE 8]><!--> <html class="no-js" lang="en" > <!--<![endif]-->
+<head>
+  <meta charset="utf-8">
+  {{ metatags }}
+  <meta name="viewport" content="width=device-width, initial-scale=1.0">
+  {% block htmltitle %}
+  <title>{{ title|striptags|e }}{{ titlesuffix }}</title>
+  {% endblock %}
+
+  {# FAVICON #}
+  {% if favicon %}
+    <link rel="shortcut icon" href="{{ pathto('_static/' + favicon, 1) }}"/>
+  {% endif %}
+
+  {# CSS #}
+
+  {# OPENSEARCH #}
+  {% if not embedded %}
+    {% if use_opensearch %}
+      <link rel="search" type="application/opensearchdescription+xml" title="{% trans docstitle=docstitle|e %}Search within {{ docstitle }}{% endtrans %}" href="{{ pathto('_static/opensearch.xml', 1) }}"/>
+    {% endif %}
+
+  {% endif %}
+
+  {# RTD hosts this file, so just load on non RTD builds #}
+  {% if not READTHEDOCS %}
+    <link rel="stylesheet" href="{{ pathto('_static/' + style, 1) }}" type="text/css" />
+  {% endif %}
+
+  {% for cssfile in css_files %}
+    <link rel="stylesheet" href="{{ pathto(cssfile, 1) }}" type="text/css" />
+  {% endfor %}
+
+  {% for cssfile in extra_css_files %}
+    <link rel="stylesheet" href="{{ pathto(cssfile, 1) }}" type="text/css" />
+  {% endfor %}
+
+  {%- block linktags %}
+    {%- if hasdoc('about') %}
+        <link rel="author" title="{{ _('About these documents') }}"
+              href="{{ pathto('about') }}"/>
+    {%- endif %}
+    {%- if hasdoc('genindex') %}
+        <link rel="index" title="{{ _('Index') }}"
+              href="{{ pathto('genindex') }}"/>
+    {%- endif %}
+    {%- if hasdoc('search') %}
+        <link rel="search" title="{{ _('Search') }}" href="{{ pathto('search') }}"/>
+    {%- endif %}
+    {%- if hasdoc('copyright') %}
+        <link rel="copyright" title="{{ _('Copyright') }}" href="{{ pathto('copyright') }}"/>
+    {%- endif %}
+    <link rel="top" title="{{ docstitle|e }}" href="{{ pathto('index') }}"/>
+    {%- if parents %}
+        <link rel="up" title="{{ parents[-1].title|striptags|e }}" href="{{ parents[-1].link|e }}"/>
+    {%- endif %}
+    {%- if next %}
+        <link rel="next" title="{{ next.title|striptags|e }}" href="{{ next.link|e }}"/>
+    {%- endif %}
+    {%- if prev %}
+        <link rel="prev" title="{{ prev.title|striptags|e }}" href="{{ prev.link|e }}"/>
+    {%- endif %}
+  {%- endblock %}
+  {%- block extrahead %} {% endblock %}
+
+  {# Keep modernizr in head - http://modernizr.com/docs/#installing #}
+  <script src="_static/js/modernizr.min.js"></script>
+
+</head>
+
+<body class="wy-body-for-nav" role="document">
+
+  <div class="wy-grid-for-nav">
+
+    {# SIDE NAV, TOGGLES ON MOBILE #}
+    <nav data-toggle="wy-nav-shift" class="wy-nav-side">
+      <div class="wy-side-nav-search">
+        {% block sidebartitle %}
+
+        {% if logo and theme_logo_only %}
+          <a href="{{ pathto(master_doc) }}">
+        {% else %}
+          <a href="{{ pathto(master_doc) }}" class="icon icon-home"> {{ project }}
+        {% endif %}
+
+        {% if logo %}
+          {# Not strictly valid HTML, but it's the only way to display/scale it properly, without weird scripting or heaps of work #}
+          <img src="{{ pathto('_static/' + logo, 1) }}" class="logo" />
+        {% endif %}
+        </a>
+
+        {% include "searchbox.html" %}
+
+        {% endblock %}
+      </div>
+
+      <div class="wy-menu wy-menu-vertical" data-spy="affix" role="navigation" aria-label="main navigation">
+        {% block menu %}
+          {% set toctree = toctree(maxdepth=4, collapse=False, includehidden=True) %}
+          {% if toctree %}
+              {{ toctree }}
+          {% else %}
+              <!-- Local TOC -->
+              <div class="local-toc">{{ toc }}</div>
+          {% endif %}
+        {% endblock %}
+      </div>
+      &nbsp;
+    </nav>
+
+    <section data-toggle="wy-nav-shift" class="wy-nav-content-wrap">
+
+      {# MOBILE NAV, TRIGGLES SIDE NAV ON TOGGLE #}
+      <nav class="wy-nav-top" role="navigation" aria-label="top navigation">
+        <i data-toggle="wy-nav-top" class="fa fa-bars"></i>
+        <a href="{{ pathto(master_doc) }}">{{ project }}</a>
+      </nav>
+
+
+      {# PAGE CONTENT #}
+      <div class="wy-nav-content">
+        <div class="rst-content">
+          {% include "breadcrumbs.html" %}
+          <div role="main" class="document">
+            {% block body %}{% endblock %}
+          </div>
+          {% include "footer.html" %}
+        </div>
+      </div>
+
+    </section>
+
+  </div>
+  {% include "versions.html" %}
+
+  {% if not embedded %}
+
+    <script type="text/javascript">
+        var DOCUMENTATION_OPTIONS = {
+            URL_ROOT:'{{ url_root }}',
+            VERSION:'{{ release|e }}',
+            COLLAPSE_INDEX:false,
+            FILE_SUFFIX:'{{ '' if no_search_suffix else file_suffix }}',
+            HAS_SOURCE:  {{ has_source|lower }}
+        };
+    </script>
+    {%- for scriptfile in script_files %}
+      <script type="text/javascript" src="{{ pathto(scriptfile, 1) }}"></script>
+    {%- endfor %}
+
+  {% endif %}
+
+  {# RTD hosts this file, so just load on non RTD builds #}
+  {% if not READTHEDOCS %}
+    <script type="text/javascript" src="{{ pathto('_static/js/theme.js', 1) }}"></script>
+  {% endif %}
+
+  {# STICKY NAVIGATION #}
+  {% if theme_sticky_navigation %}
+  <script type="text/javascript">
+      jQuery(function () {
+          SphinxRtdTheme.StickyNav.enable();
+      });
+  </script>
+  {% endif %}
+
+  {%- block footer %} {% endblock %}
+
+</body>
+</html>

lib/spack/docs/_themes/sphinx_rtd_theme/layout_old.html

@@ -0,0 +1,205 @@
+{#
+    basic/layout.html
+    ~~~~~~~~~~~~~~~~~
+
+    Master layout template for Sphinx themes.
+
+    :copyright: Copyright 2007-2013 by the Sphinx team, see AUTHORS.
+    :license: BSD, see LICENSE for details.
+#}
+{%- block doctype -%}
+<!DOCTYPE html PUBLIC "-//W3C//DTD XHTML 1.0 Transitional//EN"
+  "http://www.w3.org/TR/xhtml1/DTD/xhtml1-transitional.dtd">
+{%- endblock %}
+{%- set reldelim1 = reldelim1 is not defined and ' &raquo;' or reldelim1 %}
+{%- set reldelim2 = reldelim2 is not defined and ' |' or reldelim2 %}
+{%- set render_sidebar = (not embedded) and (not theme_nosidebar|tobool) and
+                         (sidebars != []) %}
+{%- set url_root = pathto('', 1) %}
+{# XXX necessary? #}
+{%- if url_root == '#' %}{% set url_root = '' %}{% endif %}
+{%- if not embedded and docstitle %}
+  {%- set titlesuffix = " &mdash; "|safe + docstitle|e %}
+{%- else %}
+  {%- set titlesuffix = "" %}
+{%- endif %}
+
+{%- macro relbar() %}
+    <div class="related">
+      <h3>{{ _('Navigation') }}</h3>
+      <ul>
+        {%- for rellink in rellinks %}
+        <li class="right" {% if loop.first %}style="margin-right: 10px"{% endif %}>
+          <a href="{{ pathto(rellink[0]) }}" title="{{ rellink[1]|striptags|e }}"
+             {{ accesskey(rellink[2]) }}>{{ rellink[3] }}</a>
+          {%- if not loop.first %}{{ reldelim2 }}{% endif %}</li>
+        {%- endfor %}
+        {%- block rootrellink %}
+        <li><a href="{{ pathto(master_doc) }}">{{ shorttitle|e }}</a>{{ reldelim1 }}</li>
+        {%- endblock %}
+        {%- for parent in parents %}
+          <li><a href="{{ parent.link|e }}" {% if loop.last %}{{ accesskey("U") }}{% endif %}>{{ parent.title }}</a>{{ reldelim1 }}</li>
+        {%- endfor %}
+        {%- block relbaritems %} {% endblock %}
+      </ul>
+    </div>
+{%- endmacro %}
+
+{%- macro sidebar() %}
+      {%- if render_sidebar %}
+      <div class="sphinxsidebar">
+        <div class="sphinxsidebarwrapper">
+          {%- block sidebarlogo %}
+          {%- if logo %}
+            <p class="logo"><a href="{{ pathto(master_doc) }}">
+              <img class="logo" src="{{ pathto('_static/' + logo, 1) }}" alt="Logo"/>
+            </a></p>
+          {%- endif %}
+          {%- endblock %}
+          {%- if sidebars != None %}
+            {#- new style sidebar: explicitly include/exclude templates #}
+            {%- for sidebartemplate in sidebars %}
+            {%- include sidebartemplate %}
+            {%- endfor %}
+          {%- else %}
+            {#- old style sidebars: using blocks -- should be deprecated #}
+            {%- block sidebartoc %}
+            {%- include "localtoc.html" %}
+            {%- endblock %}
+            {%- block sidebarrel %}
+            {%- include "relations.html" %}
+            {%- endblock %}
+            {%- block sidebarsourcelink %}
+            {%- include "sourcelink.html" %}
+            {%- endblock %}
+            {%- if customsidebar %}
+            {%- include customsidebar %}
+            {%- endif %}
+            {%- block sidebarsearch %}
+            {%- include "searchbox.html" %}
+            {%- endblock %}
+          {%- endif %}
+        </div>
+      </div>
+      {%- endif %}
+{%- endmacro %}
+
+{%- macro script() %}
+    <script type="text/javascript">
+      var DOCUMENTATION_OPTIONS = {
+        URL_ROOT:    '{{ url_root }}',
+        VERSION:     '{{ release|e }}',
+        COLLAPSE_INDEX: false,
+        FILE_SUFFIX: '{{ '' if no_search_suffix else file_suffix }}',
+        HAS_SOURCE:  {{ has_source|lower }}
+      };
+    </script>
+    {%- for scriptfile in script_files %}
+    <script type="text/javascript" src="{{ pathto(scriptfile, 1) }}"></script>
+    {%- endfor %}
+{%- endmacro %}
+
+{%- macro css() %}
+    <link rel="stylesheet" href="{{ pathto('_static/' + style, 1) }}" type="text/css" />
+    <link rel="stylesheet" href="{{ pathto('_static/pygments.css', 1) }}" type="text/css" />
+    {%- for cssfile in css_files %}
+    <link rel="stylesheet" href="{{ pathto(cssfile, 1) }}" type="text/css" />
+    {%- endfor %}
+{%- endmacro %}
+
+<html xmlns="http://www.w3.org/1999/xhtml">
+  <head>
+    <meta http-equiv="Content-Type" content="text/html; charset={{ encoding }}" />
+    {{ metatags }}
+    {%- block htmltitle %}
+    <title>{{ title|striptags|e }}{{ titlesuffix }}</title>
+    {%- endblock %}
+    {{ css() }}
+    {%- if not embedded %}
+    {{ script() }}
+    {%- if use_opensearch %}
+    <link rel="search" type="application/opensearchdescription+xml"
+          title="{% trans docstitle=docstitle|e %}Search within {{ docstitle }}{% endtrans %}"
+          href="{{ pathto('_static/opensearch.xml', 1) }}"/>
+    {%- endif %}
+    {%- if favicon %}
+    <link rel="shortcut icon" href="{{ pathto('_static/' + favicon, 1) }}"/>
+    {%- endif %}
+    {%- endif %}
+{%- block linktags %}
+    {%- if hasdoc('about') %}
+    <link rel="author" title="{{ _('About these documents') }}" href="{{ pathto('about') }}" />
+    {%- endif %}
+    {%- if hasdoc('genindex') %}
+    <link rel="index" title="{{ _('Index') }}" href="{{ pathto('genindex') }}" />
+    {%- endif %}
+    {%- if hasdoc('search') %}
+    <link rel="search" title="{{ _('Search') }}" href="{{ pathto('search') }}" />
+    {%- endif %}
+    {%- if hasdoc('copyright') %}
+    <link rel="copyright" title="{{ _('Copyright') }}" href="{{ pathto('copyright') }}" />
+    {%- endif %}
+    <link rel="top" title="{{ docstitle|e }}" href="{{ pathto('index') }}" />
+    {%- if parents %}
+    <link rel="up" title="{{ parents[-1].title|striptags|e }}" href="{{ parents[-1].link|e }}" />
+    {%- endif %}
+    {%- if next %}
+    <link rel="next" title="{{ next.title|striptags|e }}" href="{{ next.link|e }}" />
+    {%- endif %}
+    {%- if prev %}
+    <link rel="prev" title="{{ prev.title|striptags|e }}" href="{{ prev.link|e }}" />
+    {%- endif %}
+{%- endblock %}
+{%- block extrahead %} {% endblock %}
+  </head>
+  <body>
+{%- block header %}{% endblock %}
+
+{%- block relbar1 %}{{ relbar() }}{% endblock %}
+
+{%- block content %}
+  {%- block sidebar1 %} {# possible location for sidebar #} {% endblock %}
+
+    <div class="document">
+  {%- block document %}
+      <div class="documentwrapper">
+      {%- if render_sidebar %}
+        <div class="bodywrapper">
+      {%- endif %}
+          <div class="body">
+            {% block body %} {% endblock %}
+          </div>
+      {%- if render_sidebar %}
+        </div>
+      {%- endif %}
+      </div>
+  {%- endblock %}
+
+  {%- block sidebar2 %}{{ sidebar() }}{% endblock %}
+      <div class="clearer"></div>
+    </div>
+{%- endblock %}
+
+{%- block relbar2 %}{{ relbar() }}{% endblock %}
+
+{%- block footer %}
+    <div class="footer">
+    {%- if show_copyright %}
+      {%- if hasdoc('copyright') %}
+        {% trans path=pathto('copyright'), copyright=copyright|e %}&copy; <a href="{{ path }}">Copyright</a> {{ copyright }}.{% endtrans %}
+      {%- else %}
+        {% trans copyright=copyright|e %}&copy; Copyright {{ copyright }}.{% endtrans %}
+      {%- endif %}
+    {%- endif %}
+    {%- if last_updated %}
+      {% trans last_updated=last_updated|e %}Last updated on {{ last_updated }}.{% endtrans %}
+    {%- endif %}
+    {%- if show_sphinx %}
+      {% trans sphinx_version=sphinx_version|e %}Created using <a href="http://sphinx-doc.org/">Sphinx</a> {{ sphinx_version }}.{% endtrans %}
+    {%- endif %}
+    </div>
+    <p>asdf asdf asdf asdf 22</p>
+{%- endblock %}
+  </body>
+</html>
+

lib/spack/docs/_themes/sphinx_rtd_theme/search.html

@@ -0,0 +1,50 @@
+{#
+    basic/search.html
+    ~~~~~~~~~~~~~~~~~
+
+    Template for the search page.
+
+    :copyright: Copyright 2007-2013 by the Sphinx team, see AUTHORS.
+    :license: BSD, see LICENSE for details.
+#}
+{%- extends "layout.html" %}
+{% set title = _('Search') %}
+{% set script_files = script_files + ['_static/searchtools.js'] %}
+{% block footer %}
+  <script type="text/javascript">
+    jQuery(function() { Search.loadIndex("{{ pathto('searchindex.js', 1) }}"); });
+  </script>
+  {# this is used when loading the search index using $.ajax fails,
+     such as on Chrome for documents on localhost #}
+  <script type="text/javascript" id="searchindexloader"></script>
+  {{ super() }}
+{% endblock %}
+{% block body %}
+  <noscript>
+  <div id="fallback" class="admonition warning">
+    <p class="last">
+      {% trans %}Please activate JavaScript to enable the search
+      functionality.{% endtrans %}
+    </p>
+  </div>
+  </noscript>
+
+  {% if search_performed %}
+    <h2>{{ _('Search Results') }}</h2>
+    {% if not search_results %}
+      <p>{{ _('Your search did not match any documents. Please make sure that all words are spelled correctly and that you\'ve selected enough categories.') }}</p>
+    {% endif %}
+  {% endif %}
+  <div id="search-results">
+  {% if search_results %}
+    <ul>
+    {% for href, caption, context in search_results %}
+      <li>
+        <a href="{{ pathto(item.href) }}">{{ caption }}</a>
+        <p class="context">{{ context|e }}</p>
+      </li>
+    {% endfor %}
+    </ul>
+  {% endif %}
+  </div>
+{% endblock %}

lib/spack/docs/_themes/sphinx_rtd_theme/searchbox.html

@@ -0,0 +1,9 @@
+{%- if builder != 'singlehtml' %}
+<div role="search">
+  <form id="rtd-search-form" class="wy-form" action="{{ pathto('search') }}" method="get">
+    <input type="text" name="q" placeholder="Search docs" />
+    <input type="hidden" name="check_keywords" value="yes" />
+    <input type="hidden" name="area" value="default" />
+  </form>
+</div>
+{%- endif %}

lib/spack/docs/_themes/sphinx_rtd_theme/static/css/badge_only.css

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+/*# sourceMappingURL=badge_only.css.map */

lib/spack/docs/_themes/sphinx_rtd_theme/static/css/badge_only.css.map

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lib/spack/docs/_themes/sphinx_rtd_theme/static/fonts/fontawesome-webfont.svg

@@ -0,0 +1,414 @@
+<?xml version="1.0" standalone="no"?>
+<!DOCTYPE svg PUBLIC "-//W3C//DTD SVG 1.1//EN" "http://www.w3.org/Graphics/SVG/1.1/DTD/svg11.dtd" >
+<svg xmlns="http://www.w3.org/2000/svg">
+<metadata></metadata>
+<defs>
+<font id="fontawesomeregular" horiz-adv-x="1536" >
+<font-face units-per-em="1792" ascent="1536" descent="-256" />
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+<glyph unicode="&#xf500;" horiz-adv-x="1792" />
+</font>
+</defs></svg> 

lib/spack/docs/_themes/sphinx_rtd_theme/static/js/theme.js

@@ -0,0 +1,113 @@
+function toggleCurrent (elem) {
+    var parent_li = elem.closest('li');
+    parent_li.siblings('li.current').removeClass('current');
+    parent_li.siblings().find('li.current').removeClass('current');
+    parent_li.find('> ul li.current').removeClass('current');
+    parent_li.toggleClass('current');
+}
+
+$(document).ready(function() {
+    // Shift nav in mobile when clicking the menu.
+    $(document).on('click', "[data-toggle='wy-nav-top']", function() {
+        $("[data-toggle='wy-nav-shift']").toggleClass("shift");
+        $("[data-toggle='rst-versions']").toggleClass("shift");
+    });
+    // Nav menu link click operations
+    $(document).on('click', ".wy-menu-vertical .current ul li a", function() {
+        var target = $(this);
+        // Close menu when you click a link.
+        $("[data-toggle='wy-nav-shift']").removeClass("shift");
+        $("[data-toggle='rst-versions']").toggleClass("shift");
+        // Handle dynamic display of l3 and l4 nav lists
+        toggleCurrent(target);
+        if (typeof(window.SphinxRtdTheme) != 'undefined') {
+            window.SphinxRtdTheme.StickyNav.hashChange();
+        }
+    });
+    $(document).on('click', "[data-toggle='rst-current-version']", function() {
+        $("[data-toggle='rst-versions']").toggleClass("shift-up");
+    });
+    // Make tables responsive
+    $("table.docutils:not(.field-list)").wrap("<div class='wy-table-responsive'></div>");
+
+    // Add expand links to all parents of nested ul
+    $('.wy-menu-vertical ul').siblings('a').each(function () {
+        var link = $(this);
+            expand = $('<span class="toctree-expand"></span>');
+        expand.on('click', function (ev) {
+            toggleCurrent(link);
+            ev.stopPropagation();
+            return false;
+        });
+        link.prepend(expand);
+    });
+});
+
+// Sphinx theme state
+window.SphinxRtdTheme = (function (jquery) {
+    var stickyNav = (function () {
+        var navBar,
+            win,
+            winScroll = false,
+            linkScroll = false,
+            winPosition = 0,
+            enable = function () {
+                init();
+                reset();
+                win.on('hashchange', reset);
+
+                // Set scrolling
+                win.on('scroll', function () {
+                    if (!linkScroll) {
+                        winScroll = true;
+                    }
+                });
+                setInterval(function () {
+                    if (winScroll) {
+                        winScroll = false;
+                        var newWinPosition = win.scrollTop(),
+                            navPosition = navBar.scrollTop(),
+                            newNavPosition = navPosition + (newWinPosition - winPosition);
+                        navBar.scrollTop(newNavPosition);
+                        winPosition = newWinPosition;
+                    }
+                }, 25);
+            },
+            init = function () {
+                navBar = jquery('nav.wy-nav-side:first');
+                win = jquery(window);
+            },
+            reset = function () {
+                // Get anchor from URL and open up nested nav
+                var anchor = encodeURI(window.location.hash);
+                if (anchor) {
+                    try {
+                        var link = $('.wy-menu-vertical')
+                            .find('[href="' + anchor + '"]');
+                        $('.wy-menu-vertical li.toctree-l1 li.current')
+                            .removeClass('current');
+                        link.closest('li.toctree-l2').addClass('current');
+                        link.closest('li.toctree-l3').addClass('current');
+                        link.closest('li.toctree-l4').addClass('current');
+                    }
+                    catch (err) {
+                        console.log("Error expanding nav for anchor", err);
+                    }
+                }
+            },
+            hashChange = function () {
+                linkScroll = true;
+                win.one('hashchange', function () {
+                    linkScroll = false;
+                });
+            };
+        jquery(init);
+        return {
+            enable: enable,
+            hashChange: hashChange
+        };
+    }());
+    return {
+        StickyNav: stickyNav
+    };
+}($));

lib/spack/docs/_themes/sphinx_rtd_theme/theme.conf

@@ -0,0 +1,9 @@
+[theme]
+inherit = basic
+stylesheet = css/theme.css
+
+[options]
+typekit_id = hiw1hhg
+analytics_id = 
+sticky_navigation = False
+logo_only =

lib/spack/docs/_themes/sphinx_rtd_theme/versions.html

@@ -0,0 +1,37 @@
+{% if READTHEDOCS %}
+{# Add rst-badge after rst-versions for small badge style. #}
+  <div class="rst-versions" data-toggle="rst-versions" role="note" aria-label="versions">
+    <span class="rst-current-version" data-toggle="rst-current-version">
+      <span class="fa fa-book"> Read the Docs</span>
+      v: {{ current_version }}
+      <span class="fa fa-caret-down"></span>
+    </span>
+    <div class="rst-other-versions">
+      <dl>
+        <dt>Versions</dt>
+        {% for slug, url in versions %}
+          <dd><a href="{{ url }}">{{ slug }}</a></dd>
+        {% endfor %}
+      </dl>
+      <dl>
+        <dt>Downloads</dt>
+        {% for type, url in downloads %}
+          <dd><a href="{{ url }}">{{ type }}</a></dd>
+        {% endfor %}
+      </dl>
+      <dl>
+        <dt>On Read the Docs</dt>
+          <dd>
+            <a href="//{{ PRODUCTION_DOMAIN }}/projects/{{ slug }}/?fromdocs={{ slug }}">Project Home</a>
+          </dd>
+          <dd>
+            <a href="//{{ PRODUCTION_DOMAIN }}/builds/{{ slug }}/?fromdocs={{ slug }}">Builds</a>
+          </dd>
+      </dl>
+      <hr/>
+      Free document hosting provided by <a href="http://www.readthedocs.org">Read the Docs</a>.
+
+    </div>
+  </div>
+{% endif %}
+

lib/spack/docs/analyze.rst

@@ -1,162 +0,0 @@
-.. Copyright 2013-2021 Lawrence Livermore National Security, LLC and other
-   Spack Project Developers. See the top-level COPYRIGHT file for details.
-
-   SPDX-License-Identifier: (Apache-2.0 OR MIT)
-
-.. _analyze:
-
-=======
-Analyze
-=======
-
-
-The analyze command is a front-end to various tools that let us analyze
-package installations. Each analyzer is a module for a different kind
-of analysis that can be done on a package installation, including (but not
-limited to) binary, log, or text analysis. Thus, the analyze command group
-allows you to take an existing package install, choose an analyzer,
-and extract some output for the package using it.
-
-
------------------
-Analyzer Metadata
------------------
-
-For all analyzers, we write to an ``analyzers`` folder in ``~/.spack``, or the
-value that you specify in your spack config at ``config:analyzers_dir``. 
-For example, here we see the results of running an analysis on zlib:
-
-.. code-block:: console
-
-    $ tree ~/.spack/analyzers/
-    └── linux-ubuntu20.04-skylake
-        └── gcc-9.3.0
-            └── zlib-1.2.11-sl7m27mzkbejtkrajigj3a3m37ygv4u2
-                ├── environment_variables
-                │   └── spack-analyzer-environment-variables.json
-                ├── install_files
-                │   └── spack-analyzer-install-files.json
-                └── libabigail
-                    └── spack-analyzer-libabigail-libz.so.1.2.11.xml
-    
-
-This means that you can always find analyzer output in this folder, and it
-is organized with the same logic as the package install it was run for. 
-If you want to customize this top level folder, simply provide the ``--path``
-argument to ``spack analyze run``. The nested organization will be maintained
-within your custom root.
-
------------------
-Listing Analyzers
------------------
-
-If you aren't familiar with Spack's analyzers, you can quickly list those that 
-are available:
-
-.. code-block:: console
-
-    $ spack analyze list-analyzers
-    install_files            : install file listing read from install_manifest.json
-    environment_variables    : environment variables parsed from spack-build-env.txt
-    config_args              : config args loaded from spack-configure-args.txt
-    abigail                  : Application Binary Interface (ABI) features for objects
-
-
-In the above, the first three are fairly simple - parsing metadata files from
-a package install directory to save
-
--------------------
-Analyzing a Package
--------------------
-
-The analyze command, akin to install, will accept a package spec to perform
-an analysis for. The package must be installed. Let's walk through an example
-with zlib. We first ask to analyze it. However, since we have more than one
-install, we are asked to disambiguate:
-
-.. code-block:: console
-
-    $ spack analyze run zlib
-    ==> Error: zlib matches multiple packages.
-      Matching packages:
-        fz2bs56 zlib@1.2.11%gcc@7.5.0 arch=linux-ubuntu18.04-skylake
-        sl7m27m zlib@1.2.11%gcc@9.3.0 arch=linux-ubuntu20.04-skylake
-      Use a more specific spec.
-
-
-We can then specify the spec version that we want to analyze:
-
-.. code-block:: console
-
-    $ spack analyze run zlib/fz2bs56
-
-If you don't provide any specific analyzer names, by default all analyzers 
-(shown in the ``list-analyzers`` subcommand list) will be run. If an analyzer does not
-have any result, it will be skipped. For example, here is a result running for
-zlib:
-
-.. code-block:: console
-
-    $ ls ~/.spack/analyzers/linux-ubuntu20.04-skylake/gcc-9.3.0/zlib-1.2.11-sl7m27mzkbejtkrajigj3a3m37ygv4u2/
-    spack-analyzer-environment-variables.json
-    spack-analyzer-install-files.json
-    spack-analyzer-libabigail-libz.so.1.2.11.xml
-
-If you want to run a specific analyzer, ask for it with `--analyzer`. Here we run
-spack analyze on libabigail (already installed) _using_ libabigail1
-
-.. code-block:: console
-
-    $ spack analyze run --analyzer abigail libabigail
-
-
-.. _analyze_monitoring:
-
-----------------------
-Monitoring An Analysis
-----------------------
-
-For any kind of analysis, you can
-use a `spack monitor <https://github.com/spack/spack-monitor>`_ "Spackmon"
-as a server to upload the same run metadata to. You can
-follow the instructions in the `spack monitor documentation <https://spack-monitor.readthedocs.org>`_
-to first create a server along with a username and token for yourself.
-You can then use this guide to interact with the server.
-
-You should first export our spack monitor token and username to the environment:
-
-.. code-block:: console
- 
-    $ export SPACKMON_TOKEN=50445263afd8f67e59bd79bff597836ee6c05438
-    $ export SPACKMON_USER=spacky
-
-
-By default, the host for your server is expected to be at ``http://127.0.0.1``
-with a prefix of ``ms1``, and if this is the case, you can simply add the
-``--monitor`` flag to the install command:
-
-.. code-block:: console
-
-    $ spack analyze run --monitor wget
-
-If you need to customize the host or the prefix, you can do that as well:
-
-.. code-block:: console
-
-    $ spack analyze run --monitor --monitor-prefix monitor --monitor-host https://monitor-service.io wget
-
-If your server doesn't have authentication, you can skip it:
-
-.. code-block:: console
-
-    $ spack analyze run --monitor --monitor-disable-auth wget
-    
-Regardless of your choice, when you run analyze on an installed package (whether
-it was installed with ``--monitor`` or not, you'll see the results generating as they did
-before, and a message that the monitor server was pinged:
-
-.. code-block:: console
-
-    $ spack analyze --monitor wget
-    ...
-    ==> Sending result for wget bin/wget to monitor.

lib/spack/docs/binary_caches.rst

@@ -1,238 +0,0 @@
-.. Copyright 2013-2021 Lawrence Livermore National Security, LLC and other
-   Spack Project Developers. See the top-level COPYRIGHT file for details.
-
-   SPDX-License-Identifier: (Apache-2.0 OR MIT)
-
-.. _binary_caches:
-
-============
-Build Caches
-============
-
-Some sites may encourage users to set up their own test environments
-before carrying out central installations, or some users may prefer to set
-up these environments on their own motivation. To reduce the load of
-recompiling otherwise identical package specs in different installations,
-installed packages can be put into build cache tarballs, uploaded to
-your Spack mirror and then downloaded and installed by others.
-
-
---------------------------
-Creating build cache files
---------------------------
-
-A compressed tarball of an installed package is created. Tarballs are created
-for all of its link and run dependency packages as well. Compressed tarballs are
-signed with gpg and signature and tarball and put in a ``.spack`` file. Optionally,
-the rpaths (and ids and deps on macOS) can be changed to paths relative to
-the Spack install tree before the tarball is created.
-
-Build caches are created via:
-
-.. code-block:: console
-
-    $ spack buildcache create <spec>
-
-
-If you wanted to create a build cache in a local directory, you would provide
-the ``-d`` argument to target that directory, again also specifying the spec.
-Here is an example creating a local directory, "spack-cache" and creating
-build cache files for the "ninja" spec:
-
-.. code-block:: console
-
-    $ mkdir -p ./spack-cache
-    $ spack buildcache create -d ./spack-cache ninja
-    ==> Buildcache files will be output to file:///home/spackuser/spack/spack-cache/build_cache
-    gpgconf: socketdir is '/run/user/1000/gnupg'
-    gpg: using "E6DF6A8BD43208E4D6F392F23777740B7DBD643D" as default secret key for signing
-
-Note that the targeted spec must already be installed. Once you have a build cache,
-you can add it as a mirror, discussed next.
-
----------------------------------------
-Finding or installing build cache files
----------------------------------------
-
-To find build caches or install build caches, a Spack mirror must be configured
-with:
-
-.. code-block:: console
-
-    $ spack mirror add <name> <url>
-
-
-Note that the url can be a web url _or_ a local filesystem location. In the previous
-example, you might add the directory "spack-cache" and call it ``mymirror``:
-
-
-.. code-block:: console
-
-    $ spack mirror add mymirror ./spack-cache
-
-
-You can see that the mirror is added with ``spack mirror list`` as follows:
-
-.. code-block:: console
-
-
-    $ spack mirror list
-    mymirror           file:///home/spackuser/spack/spack-cache
-    spack-public       https://spack-llnl-mirror.s3-us-west-2.amazonaws.com/
-
-
-At this point, you've create a buildcache, but spack hasn't indexed it, so if
-you run ``spack buildcache list`` you won't see any results. You need to index
-this new build cache as follows:
-
-.. code-block:: console
-
-    $ spack buildcache update-index -d spack-cache/
-
-Now you can use list:
-
-.. code-block:: console
-
-    $  spack buildcache list
-    ==> 1 cached build.
-    -- linux-ubuntu20.04-skylake / gcc@9.3.0 ------------------------
-    ninja@1.10.2
-
-
-Great! So now let's say you have a different spack installation, or perhaps just
-a different environment for the same one, and you want to install a package from
-that build cache. Let's first uninstall the actual library "ninja" to see if we can
-re-install it from the cache.
-
-.. code-block:: console
-
-    $ spack uninstall ninja
-
-
-And now reinstall from the buildcache
-
-.. code-block:: console
-
-    $ spack buildcache install ninja
-    ==> buildcache spec(s) matching ninja 
-    ==> Fetching file:///home/spackuser/spack/spack-cache/build_cache/linux-ubuntu20.04-skylake/gcc-9.3.0/ninja-1.10.2/linux-ubuntu20.04-skylake-gcc-9.3.0-ninja-1.10.2-i4e5luour7jxdpc3bkiykd4imke3mkym.spack
-    ####################################################################################################################################### 100.0%
-    ==> Installing buildcache for spec ninja@1.10.2%gcc@9.3.0 arch=linux-ubuntu20.04-skylake
-    gpgconf: socketdir is '/run/user/1000/gnupg'
-    gpg: Signature made Tue 23 Mar 2021 10:16:29 PM MDT
-    gpg:                using RSA key E6DF6A8BD43208E4D6F392F23777740B7DBD643D
-    gpg: Good signature from "spackuser (GPG created for Spack) <spackuser@noreply.users.github.com>" [ultimate]
-
-
-It worked! You've just completed a full example of creating a build cache with
-a spec of interest, adding it as a mirror, updating it's index, listing the contents,
-and finally, installing from it.
-
-
-Note that the above command is intended to install a particular package to a
-build cache you have created, and not to install a package from a build cache.
-For the latter, once a mirror is added, by default when you do ``spack install`` the ``--use-cache``
-flag is set, and you will install a package from a build cache if it is available.
-If you want to always use the cache, you can do:
-
-.. code-block:: console
-
-   $ spack install --cache-only <package>
-
-For example, to combine all of the commands above to add the E4S build cache
-and then install from it exclusively, you would do:
-
-.. code-block:: console
-
-    $ spack mirror add E4S https://cache.e4s.io
-    $ spack buildcache keys --install --trust
-    $ spack install --cache-only <package>
-
-We use ``--install`` and ``--trust`` to say that we are installing keys to our
-keyring, and trusting all downloaded keys.
-
-
-^^^^^^^^^^^^^^^^^^^^^^^^^^^^
-List of popular build caches
-^^^^^^^^^^^^^^^^^^^^^^^^^^^^
-
-* `Extreme-scale Scientific Software Stack (E4S) <https://e4s-project.github.io/>`_: `build cache <https://oaciss.uoregon.edu/e4s/inventory.html>`_
-
-
-----------
-Relocation
-----------
-
-Initial build and later installation do not necessarily happen at the same
-location. Spack provides a relocation capability and corrects for RPATHs and
-non-relocatable scripts. However, many packages compile paths into binary
-artifacts directly. In such cases, the build instructions of this package would
-need to be adjusted for better re-locatability.
-
-.. _cmd-spack-buildcache:
-
---------------------
-``spack buildcache``
---------------------
-
-^^^^^^^^^^^^^^^^^^^^^^^^^^^
-``spack buildcache create``
-^^^^^^^^^^^^^^^^^^^^^^^^^^^
-
-Create tarball of installed Spack package and all dependencies.
-Tarballs are checksummed and signed if gpg2 is available.
-Places them in a directory ``build_cache`` that can be copied to a mirror.
-Commands like ``spack buildcache install`` will search Spack mirrors for build_cache to get the list of build caches.
-
-==============  ========================================================================================================================
-Arguments       Description
-==============  ========================================================================================================================
-``<specs>``     list of partial specs or hashes with a leading ``/`` to match from installed packages and used for creating build caches
-``-d <path>``   directory in which ``build_cache`` directory is created, defaults to ``.``
-``-f``          overwrite ``.spack`` file in ``build_cache`` directory if it exists
-``-k <key>``    the key to sign package with. In the case where multiple keys exist, the package will be unsigned unless ``-k`` is used.
-``-r``          make paths in binaries relative before creating tarball
-``-y``          answer yes to all create unsigned ``build_cache`` questions
-==============  ========================================================================================================================
-
-^^^^^^^^^^^^^^^^^^^^^^^^^
-``spack buildcache list``
-^^^^^^^^^^^^^^^^^^^^^^^^^
-
-Retrieves all specs for build caches available on a Spack mirror.
-
-==============  =====================================================================================
-Arguments       Description
-==============  =====================================================================================
-``<specs>``     list of partial package specs to be matched against specs downloaded for build caches
-==============  =====================================================================================
-
-E.g. ``spack buildcache list gcc`` with print only commands to install ``gcc`` package(s)
-
-^^^^^^^^^^^^^^^^^^^^^^^^^^^^
-``spack buildcache install``
-^^^^^^^^^^^^^^^^^^^^^^^^^^^^
-
-Retrieves all specs for build caches available on a Spack mirror and installs build caches
-with specs matching the specs input.
-
-==============  ==============================================================================================
-Arguments       Description
-==============  ==============================================================================================
-``<specs>``     list of partial package specs or hashes with a leading ``/`` to be installed from build caches
-``-f``          remove install directory if it exists before unpacking tarball
-``-y``          answer yes to all to don't verify package with gpg questions
-==============  ==============================================================================================
-
-^^^^^^^^^^^^^^^^^^^^^^^^^
-``spack buildcache keys``
-^^^^^^^^^^^^^^^^^^^^^^^^^
-
-List public keys available on Spack mirror.
-
-=========  ==============================================
-Arguments  Description
-=========  ==============================================
-``-i``     trust the keys downloaded with prompt for each
-``-y``     answer yes to all trust all keys downloaded
-=========  ==============================================

lib/spack/docs/build_settings.rst

@@ -1,319 +0,0 @@
-.. Copyright 2013-2021 Lawrence Livermore National Security, LLC and other
-   Spack Project Developers. See the top-level COPYRIGHT file for details.
-
-   SPDX-License-Identifier: (Apache-2.0 OR MIT)
-
-.. _build-settings:
-
-===================
-Build Customization
-===================
-
-Spack allows you to customize how your software is built through the
-``packages.yaml`` file.  Using it, you can make Spack prefer particular
-implementations of virtual dependencies (e.g., MPI or BLAS/LAPACK),
-or you can make it prefer to build with particular compilers.  You can
-also tell Spack to use *external* software installations already
-present on your system.
-
-At a high level, the ``packages.yaml`` file is structured like this:
-
-.. code-block:: yaml
-
-   packages:
-     package1:
-       # settings for package1
-     package2:
-       # settings for package2
-     # ...
-     all:
-       # settings that apply to all packages.
-
-So you can either set build preferences specifically for *one* package,
-or you can specify that certain settings should apply to *all* packages.
-The types of settings you can customize are described in detail below.
-
-Spack's build defaults are in the default
-``etc/spack/defaults/packages.yaml`` file.  You can override them in
-``~/.spack/packages.yaml`` or ``etc/spack/packages.yaml``. For more
-details on how this works, see :ref:`configuration-scopes`.
-
-.. _sec-external-packages:
-
------------------
-External Packages
------------------
-
-Spack can be configured to use externally-installed
-packages rather than building its own packages. This may be desirable
-if machines ship with system packages, such as a customized MPI
-that should be used instead of Spack building its own MPI.
-
-External packages are configured through the ``packages.yaml`` file found
-in a Spack installation's ``etc/spack/`` or a user's ``~/.spack/``
-directory. Here's an example of an external configuration:
-
-.. code-block:: yaml
-
-   packages:
-     openmpi:
-       externals:
-       - spec: "openmpi@1.4.3%gcc@4.4.7 arch=linux-debian7-x86_64"
-         prefix: /opt/openmpi-1.4.3
-       - spec: "openmpi@1.4.3%gcc@4.4.7 arch=linux-debian7-x86_64+debug"
-         prefix: /opt/openmpi-1.4.3-debug
-       - spec: "openmpi@1.6.5%intel@10.1 arch=linux-debian7-x86_64"
-         prefix: /opt/openmpi-1.6.5-intel
-
-This example lists three installations of OpenMPI, one built with GCC,
-one built with GCC and debug information, and another built with Intel.
-If Spack is asked to build a package that uses one of these MPIs as a
-dependency, it will use the pre-installed OpenMPI in
-the given directory. Note that the specified path is the top-level
-install prefix, not the ``bin`` subdirectory.
-
-``packages.yaml`` can also be used to specify modules to load instead
-of the installation prefixes.  The following example says that module
-``CMake/3.7.2`` provides cmake version 3.7.2.
-
-.. code-block:: yaml
-
-   cmake:
-     externals:
-     - spec: cmake@3.7.2
-       modules:
-       - CMake/3.7.2
-
-Each ``packages.yaml`` begins with a ``packages:`` attribute, followed
-by a list of package names.  To specify externals, add an ``externals:``
-attribute under the package name, which lists externals.
-Each external should specify a ``spec:`` string that should be as
-well-defined as reasonably possible.  If a
-package lacks a spec component, such as missing a compiler or
-package version, then Spack will guess the missing component based
-on its most-favored packages, and it may guess incorrectly.
-
-Each package version and compiler listed in an external should
-have entries in Spack's packages and compiler configuration, even
-though the package and compiler may not ever be built.
-
-The packages configuration can tell Spack to use an external location
-for certain package versions, but it does not restrict Spack to using
-external packages.  In the above example, since newer versions of OpenMPI
-are available, Spack will choose to start building and linking with the
-latest version rather than continue using the pre-installed OpenMPI versions.
-
-To prevent this, the ``packages.yaml`` configuration also allows packages
-to be flagged as non-buildable.  The previous example could be modified to
-be:
-
-.. code-block:: yaml
-
-   packages:
-     openmpi:
-       externals:
-       - spec: "openmpi@1.4.3%gcc@4.4.7 arch=linux-debian7-x86_64"
-         prefix: /opt/openmpi-1.4.3
-       - spec: "openmpi@1.4.3%gcc@4.4.7 arch=linux-debian7-x86_64+debug"
-         prefix: /opt/openmpi-1.4.3-debug
-       - spec: "openmpi@1.6.5%intel@10.1 arch=linux-debian7-x86_64"
-         prefix: /opt/openmpi-1.6.5-intel
-       buildable: False
-
-The addition of the ``buildable`` flag tells Spack that it should never build
-its own version of OpenMPI, and it will instead always rely on a pre-built
-OpenMPI.  Similar to ``paths``, ``buildable`` is specified as a property under
-a package name.
-
-If an external module is specified as not buildable, then Spack will load the
-external module into the build environment which can be used for linking.
-
-The ``buildable`` does not need to be paired with external packages.
-It could also be used alone to forbid packages that may be
-buggy or otherwise undesirable.
-
-Virtual packages in Spack can also be specified as not buildable, and
-external implementations can be provided. In the example above,
-OpenMPI is configured as not buildable, but Spack will often prefer
-other MPI implementations over the externally available OpenMPI. Spack
-can be configured with every MPI provider not buildable individually,
-but more conveniently:
-
-.. code-block:: yaml
-
-   packages:
-     mpi:
-       buildable: False
-     openmpi:
-       externals:
-       - spec: "openmpi@1.4.3%gcc@4.4.7 arch=linux-debian7-x86_64"
-         prefix: /opt/openmpi-1.4.3
-       - spec: "openmpi@1.4.3%gcc@4.4.7 arch=linux-debian7-x86_64+debug"
-         prefix: /opt/openmpi-1.4.3-debug
-       - spec: "openmpi@1.6.5%intel@10.1 arch=linux-debian7-x86_64"
-         prefix: /opt/openmpi-1.6.5-intel
-
-Implementations can also be listed immediately under the virtual they provide:
-
-.. code-block:: yaml
-
-   packages:
-     mpi:
-       buildable: False
-         openmpi@1.4.3%gcc@4.4.7 arch=linux-debian7-x86_64: /opt/openmpi-1.4.3
-         openmpi@1.4.3%gcc@4.4.7 arch=linux-debian7-x86_64+debug: /opt/openmpi-1.4.3-debug
-         openmpi@1.6.5%intel@10.1 arch=linux-debian7-x86_64: /opt/openmpi-1.6.5-intel
-         mpich@3.3 %clang@9.0.0 arch=linux-debian7-x86_64: /opt/mpich-3.3-intel
-
-Spack can then use any of the listed external implementations of MPI
-to satisfy a dependency, and will choose depending on the compiler and
-architecture.
-
-.. _cmd-spack-external-find:
-
-^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
-Automatically Find External Packages
-^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
-
-You can run the :ref:`spack external find <spack-external-find>` command
-to search for system-provided packages and add them to ``packages.yaml``.
-After running this command your ``packages.yaml`` may include new entries:
-
-.. code-block:: yaml
-
-   packages:
-     cmake:
-       externals:
-       - spec: cmake@3.17.2
-         prefix: /usr
-
-Generally this is useful for detecting a small set of commonly-used packages;
-for now this is generally limited to finding build-only dependencies.
-Specific limitations include:
-
-* Packages are not discoverable by default: For a package to be
-  discoverable with ``spack external find``, it needs to add special
-  logic. See :ref:`here <make-package-findable>` for more details.
-* The current implementation only collects and examines executable files,
-  so it is typically only useful for build/run dependencies (in some cases
-  if a library package also provides an executable, it may be possible to
-  extract a meaningful Spec by running the executable - for example the
-  compiler wrappers in MPI implementations).
-* The logic does not search through module files, it can only detect
-  packages with executables defined in ``PATH``; you can help Spack locate
-  externals which use module files by loading any associated modules for
-  packages that you want Spack to know about before running
-  ``spack external find``.
-* Spack does not overwrite existing entries in the package configuration:
-  If there is an external defined for a spec at any configuration scope,
-  then Spack will not add a new external entry (``spack config blame packages``
-  can help locate all external entries).
-
-.. _concretization-preferences:
-
---------------------------
-Concretization Preferences
---------------------------
-
-Spack can be configured to prefer certain compilers, package
-versions, dependencies, and variants during concretization.
-The preferred configuration can be controlled via the
-``~/.spack/packages.yaml`` file for user configurations, or the
-``etc/spack/packages.yaml`` site configuration.
-
-Here's an example ``packages.yaml`` file that sets preferred packages:
-
-.. code-block:: yaml
-
-   packages:
-     opencv:
-       compiler: [gcc@4.9]
-       variants: +debug
-     gperftools:
-       version: [2.2, 2.4, 2.3]
-     all:
-       compiler: [gcc@4.4.7, 'gcc@4.6:', intel, clang, pgi]
-       target: [sandybridge]
-       providers:
-         mpi: [mvapich2, mpich, openmpi]
-
-At a high level, this example is specifying how packages should be
-concretized.  The opencv package should prefer using GCC 4.9 and
-be built with debug options.  The gperftools package should prefer version
-2.2 over 2.4.  Every package on the system should prefer mvapich2 for
-its MPI and GCC 4.4.7 (except for opencv, which overrides this by preferring GCC 4.9).
-These options are used to fill in implicit defaults.  Any of them can be overwritten
-on the command line if explicitly requested.
-
-Each ``packages.yaml`` file begins with the string ``packages:`` and
-package names are specified on the next level. The special string ``all``
-applies settings to *all* packages. Underneath each package name is one
-or more components: ``compiler``, ``variants``, ``version``,
-``providers``, and ``target``.  Each component has an ordered list of
-spec ``constraints``, with earlier entries in the list being preferred
-over later entries.
-
-Sometimes a package installation may have constraints that forbid
-the first concretization rule, in which case Spack will use the first
-legal concretization rule.  Going back to the example, if a user
-requests gperftools 2.3 or later, then Spack will install version 2.4
-as the 2.4 version of gperftools is preferred over 2.3.
-
-An explicit concretization rule in the preferred section will always
-take preference over unlisted concretizations.  In the above example,
-xlc isn't listed in the compiler list.  Every listed compiler from
-gcc to pgi will thus be preferred over the xlc compiler.
-
-The syntax for the ``provider`` section differs slightly from other
-concretization rules.  A provider lists a value that packages may
-``depend_on`` (e.g, MPI) and a list of rules for fulfilling that
-dependency.
-
-.. _package_permissions:
-
--------------------
-Package Permissions
--------------------
-
-Spack can be configured to assign permissions to the files installed
-by a package.
-
-In the ``packages.yaml`` file under ``permissions``, the attributes
-``read``, ``write``, and ``group`` control the package
-permissions. These attributes can be set per-package, or for all
-packages under ``all``. If permissions are set under ``all`` and for a
-specific package, the package-specific settings take precedence.
-
-The ``read`` and ``write`` attributes take one of ``user``, ``group``,
-and ``world``.
-
-.. code-block:: yaml
-
-  packages:
-    all:
-      permissions:
-        write: group
-        group: spack
-    my_app:
-      permissions:
-        read: group
-        group: my_team
-
-The permissions settings describe the broadest level of access to
-installations of the specified packages. The execute permissions of
-the file are set to the same level as read permissions for those files
-that are executable. The default setting for ``read`` is ``world``,
-and for ``write`` is ``user``. In the example above, installations of
-``my_app`` will be installed with user and group permissions but no
-world permissions, and owned by the group ``my_team``. All other
-packages will be installed with user and group write privileges, and
-world read privileges. Those packages will be owned by the group
-``spack``.
-
-The ``group`` attribute assigns a Unix-style group to a package. All
-files installed by the package will be owned by the assigned group,
-and the sticky group bit will be set on the install prefix and all
-directories inside the install prefix. This will ensure that even
-manually placed files within the install prefix are owned by the
-assigned group. If no group is assigned, Spack will allow the OS
-default behavior to go as expected.

lib/spack/docs/build_systems.rst

@@ -1,95 +0,0 @@
-.. Copyright 2013-2021 Lawrence Livermore National Security, LLC and other
-   Spack Project Developers. See the top-level COPYRIGHT file for details.
-
-   SPDX-License-Identifier: (Apache-2.0 OR MIT)
-
-
-.. _build-systems:
-
-=============
-Build Systems
-=============
-
-Spack defines a number of classes which understand how to use common
-`build systems  <https://en.wikipedia.org/wiki/List_of_build_automation_software>`_
-(Makefiles, CMake, etc.). Spack package definitions can inherit these
-classes in order to streamline their builds.
-
-This guide provides information specific to each particular build system.
-It assumes that you've read the :ref:`packaging-guide` and expands
-on these ideas for each distinct build system that Spack supports:
-
-.. toctree::
-   :maxdepth: 1
-   :caption: Make-based
-
-   build_systems/makefilepackage
-
-.. toctree::
-   :maxdepth: 1
-   :caption: Make-incompatible
-
-   build_systems/mavenpackage
-   build_systems/sconspackage
-   build_systems/wafpackage
-
-.. toctree::
-   :maxdepth: 1
-   :caption: Build-script generation
-
-   build_systems/autotoolspackage
-   build_systems/cmakepackage
-   build_systems/mesonpackage
-   build_systems/qmakepackage
-   build_systems/sippackage
-
-.. toctree::
-   :maxdepth: 1
-   :caption: Language-specific
-
-   build_systems/octavepackage
-   build_systems/perlpackage
-   build_systems/pythonpackage
-   build_systems/rpackage
-   build_systems/rubypackage
-
-.. toctree::
-   :maxdepth: 1
-   :caption: Other
-
-   build_systems/bundlepackage
-   build_systems/cudapackage
-   build_systems/inteloneapipackage
-   build_systems/intelpackage
-   build_systems/rocmpackage
-   build_systems/custompackage
-   build_systems/multiplepackage
-
-For reference, the :py:mod:`Build System API docs <spack.build_systems>`
-provide a list of build systems and methods/attributes that can be
-overridden. If you are curious about the implementation of a particular
-build system, you can view the source code by running:
-
-.. code-block:: console
-
-   $ spack edit --build-system autotools
-
-
-This will open up the ``AutotoolsPackage`` definition in your favorite
-editor. In addition, if you are working with a less common build system
-like QMake, SCons, or Waf, it may be useful to see examples of other
-packages. You can quickly find examples by running:
-
-.. code-block:: console
-
-   $ cd var/spack/repos/builtin/packages
-   $ grep -l QMakePackage */package.py
-
-
-You can then view these packages with ``spack edit``.
-
-This guide is intended to supplement the
-:py:mod:`Build System API docs <spack.build_systems>` with examples of
-how to override commonly used methods. It also provides rules of thumb
-and suggestions for package developers who are unfamiliar with a
-particular build system.

lib/spack/docs/build_systems/Autoconf-automake-process.svg

@@ -1,840 +0,0 @@
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lib/spack/docs/build_systems/autotoolspackage.rst

@@ -1,518 +0,0 @@
-.. Copyright 2013-2021 Lawrence Livermore National Security, LLC and other
-   Spack Project Developers. See the top-level COPYRIGHT file for details.
-
-   SPDX-License-Identifier: (Apache-2.0 OR MIT)
-
-.. _autotoolspackage:
-
-----------------
-AutotoolsPackage
-----------------
-
-Autotools is a GNU build system that provides a build-script generator.
-By running the platform-independent ``./configure`` script that comes
-with the package, you can generate a platform-dependent Makefile.
-
-^^^^^^
-Phases
-^^^^^^
-
-The ``AutotoolsPackage`` base class comes with the following phases:
-
-#. ``autoreconf`` - generate the configure script
-#. ``configure`` - generate the Makefiles
-#. ``build`` - build the package
-#. ``install`` - install the package
-
-Most of the time, the ``autoreconf`` phase will do nothing, but if the
-package is missing a ``configure`` script, ``autoreconf`` will generate
-one for you.
-
-The other phases run:
-
-.. code-block:: console
-
-   $ ./configure --prefix=/path/to/installation/prefix
-   $ make
-   $ make check  # optional
-   $ make install
-   $ make installcheck  # optional
-
-
-Of course, you may need to add a few arguments to the ``./configure``
-line.
-
-^^^^^^^^^^^^^^^
-Important files
-^^^^^^^^^^^^^^^
-
-The most important file for an Autotools-based package is the ``configure``
-script. This script is automatically generated by Autotools and generates
-the appropriate Makefile when run.
-
-.. warning::
-
-   Watch out for fake Autotools packages!
-
-   Autotools is a very popular build system, and many people are used to the
-   classic steps to install a package:
-
-   .. code-block:: console
-
-      $ ./configure
-      $ make
-      $ make install
-
-
-   For this reason, some developers will write their own ``configure``
-   scripts that have nothing to do with Autotools. These packages may
-   not accept the same flags as other Autotools packages, so it is
-   better to use the ``Package`` base class and create a
-   :ref:`custom build system <custompackage>`. You can tell if a package
-   uses Autotools by running ``./configure --help`` and comparing the output
-   to other known Autotools packages. You should also look for files like:
-
-   * ``configure.ac``
-   * ``configure.in``
-   * ``Makefile.am``
-
-   Packages that don't use Autotools aren't likely to have these files.
-
-^^^^^^^^^^^^^^^^^^^^^^^^^
-Build system dependencies
-^^^^^^^^^^^^^^^^^^^^^^^^^
-
-Whether or not your package requires Autotools to install depends on
-how the source code is distributed. Most of the time, when developers
-distribute tarballs, they will already contain the ``configure`` script
-necessary for installation. If this is the case, your package does not
-require any Autotools dependencies.
-
-However, a basic rule of version control systems is to never commit
-code that can be generated. The source code repository itself likely
-does not have a ``configure`` script. Developers typically write
-(or auto-generate) a ``configure.ac`` script that contains configuration
-preferences and a ``Makefile.am`` script that contains build instructions.
-Then, ``autoconf`` is used to convert ``configure.ac`` into ``configure``,
-while ``automake`` is used to convert ``Makefile.am`` into ``Makefile.in``.
-``Makefile.in`` is used by ``configure`` to generate a platform-dependent
-``Makefile`` for you. The following diagram provides a high-level overview
-of the process:
-
-.. figure:: Autoconf-automake-process.*
-   :target: https://commons.wikimedia.org/w/index.php?curid=15581407
-
-   `GNU autoconf and automake process for generating makefiles <https://commons.wikimedia.org/wiki/File:Autoconf-automake-process.svg>`_
-   by `Jdthood` under `CC BY-SA 3.0 <https://creativecommons.org/licenses/by-sa/3.0/deed.en>`_
-
-If a ``configure`` script is not present in your tarball, you will
-need to generate one yourself. Luckily, Spack already has an ``autoreconf``
-phase to do most of the work for you. By default, the ``autoreconf``
-phase runs:
-
-.. code-block:: console
-
-   $ autoreconf --install --verbose --force -I <aclocal-prefix>/share/aclocal
-
-In case you need to add more arguments, override ``autoreconf_extra_args``
-in your ``package.py`` on class scope like this:
-
-.. code-block:: python
-
-   autoreconf_extra_args = ["-Im4"]
-
-All you need to do is add a few Autotools dependencies to the package.
-Most stable releases will come with a ``configure`` script, but if you
-check out a commit from the ``master`` branch, you would want to add:
-
-.. code-block:: python
-
-   depends_on('autoconf', type='build', when='@master')
-   depends_on('automake', type='build', when='@master')
-   depends_on('libtool',  type='build', when='@master')
-
-It is typically redundant to list the ``m4`` macro processor package as a
-dependency, since ``autoconf`` already depends on it.
-
-"""""""""""""""""""""""""""""""
-Using a custom autoreconf phase
-"""""""""""""""""""""""""""""""
-
-In some cases, it might be needed to replace the default implementation
-of the autoreconf phase with one running a script interpreter. In this
-example, the ``bash`` shell is used to run the ``autogen.sh`` script.
-
-.. code-block:: python
-
-   def autoreconf(self, spec, prefix):
-       which('bash')('autogen.sh')
-
-"""""""""""""""""""""""""""""""""""""""
-patching configure or Makefile.in files
-"""""""""""""""""""""""""""""""""""""""
-
-In some cases, developers might need to distribute a patch that modifies
-one of the files used to generate ``configure`` or ``Makefile.in``.
-In this case, these scripts will need to be regenerated. It is
-preferable to regenerate these manually using the patch, and then
-create a new patch that directly modifies ``configure``. That way,
-Spack can use the secondary patch and additional build system
-dependencies aren't necessary.
-
-""""""""""""""""""""""""""""
-Old Autotools helper scripts
-""""""""""""""""""""""""""""
-
-Autotools based tarballs come with helper scripts such as ``config.sub`` and
-``config.guess``. It is the responsibility of the developers to keep these files
-up to date so that they run on every platform, but for very old software
-releases this is impossible. In these cases Spack can help to replace these
-files with newer ones, without having to add the heavy dependency on
-``automake``.
-
-Automatic helper script replacement is currently enabled by default on
-``ppc64le`` and ``aarch64``, as these are the known cases where old scripts fail.
-On these targets, ``AutotoolsPackage`` adds a build dependency on ``gnuconfig``,
-which is a very light-weight package with newer versions of the helper files.
-Spack then tries to run all the helper scripts it can find in the release, and
-replaces them on failure with the helper scripts from ``gnuconfig``.
-
-To opt out of this feature, use the following setting:
-
-.. code-block:: python
-
-   patch_config_files = False
-
-To enable it conditionally on different architectures, define a property and
-make the package depend on ``gnuconfig`` as a build dependency:
-
-.. code-block
-
-   depends_on('gnuconfig', when='@1.0:')
-
-   @property
-   def patch_config_files(self):
-      return self.spec.satisfies("@1.0:")
-
-.. note::
-
-    On some exotic architectures it is necessary to use system provided
-    ``config.sub`` and ``config.guess`` files. In this case, the most
-    transparent solution is to mark the ``gnuconfig`` package as external and
-    non-buildable, with a prefix set to the directory containing the files:
-
-   .. code-block:: yaml
-
-       gnuconfig:
-         buildable: false
-         externals:
-         - spec: gnuconfig@master
-           prefix: /usr/share/configure_files/
-
-
-""""""""""""""""
-force_autoreconf
-""""""""""""""""
-
-If for whatever reason you really want to add the original patch
-and tell Spack to regenerate ``configure``, you can do so using the
-following setting:
-
-.. code-block:: python
-
-   force_autoreconf = True
-
-This line tells Spack to wipe away the existing ``configure`` script
-and generate a new one. If you only need to do this for a single
-version, this can be done like so:
-
-.. code-block:: python
-
-   @property
-   def force_autoreconf(self):
-       return self.version == Version('1.2.3')
-
-^^^^^^^^^^^^^^^^^^^^^^^
-Finding configure flags
-^^^^^^^^^^^^^^^^^^^^^^^
-
-Once you have a ``configure`` script present, the next step is to
-determine what option flags are available. These flags can be found
-by running:
-
-.. code-block:: console
-
-   $ ./configure --help
-
-``configure`` will display a list of valid flags separated into
-some or all of the following sections:
-
-* Configuration
-* Installation directories
-* Fine tuning of the installation directories
-* Program names
-* X features
-* System types
-* **Optional Features**
-* **Optional Packages**
-* **Some influential environment variables**
-
-For the most part, you can ignore all but the last 3 sections.
-The "Optional Features" sections lists flags that enable/disable
-features you may be interested in. The "Optional Packages" section
-often lists dependencies and the flags needed to locate them. The
-"environment variables" section lists environment variables that the
-build system uses to pass flags to the compiler and linker.
-
-^^^^^^^^^^^^^^^^^^^^^^^^^^
-Addings flags to configure
-^^^^^^^^^^^^^^^^^^^^^^^^^^
-
-For most of the flags you encounter, you will want a variant to
-optionally enable/disable them. You can then optionally pass these
-flags to the ``configure`` call by overriding the ``configure_args``
-function like so:
-
-.. code-block:: python
-
-   def configure_args(self):
-       args = []
-
-       if '+mpi' in self.spec:
-           args.append('--enable-mpi')
-       else:
-           args.append('--disable-mpi')
-
-       return args
-
-Note that we are explicitly disabling MPI support if it is not
-requested. This is important, as many Autotools packages will enable
-options by default if the dependencies are found, and disable them
-otherwise. We want Spack installations to be as deterministic as possible.
-If two users install a package with the same variants, the goal is that
-both installations work the same way. See `here <https://www.linux.com/news/best-practices-autotools>`__
-and `here <https://wiki.gentoo.org/wiki/Project:Quality_Assurance/Automagic_dependencies>`__
-for a rationale as to why these so-called "automagic" dependencies
-are a problem.
-
-By default, Autotools installs packages to ``/usr``. We don't want this,
-so Spack automatically adds ``--prefix=/path/to/installation/prefix``
-to your list of ``configure_args``. You don't need to add this yourself.
-
-^^^^^^^^^^^^^^^^
-Helper functions
-^^^^^^^^^^^^^^^^
-
-You may have noticed that most of the Autotools flags are of the form
-``--enable-foo``, ``--disable-bar``, ``--with-baz=<prefix>``, or
-``--without-baz``. Since these flags are so common, Spack provides a
-couple of helper functions to make your life easier.
-
-"""""""""""""""""
-enable_or_disable
-"""""""""""""""""
-
-Autotools flags for simple boolean variants can be automatically
-generated by calling the ``enable_or_disable`` method. This is
-typically used to enable or disable some feature within the package.
-
-.. code-block:: python
-
-   variant(
-       'memchecker',
-       default=False,
-       description='Memchecker support for debugging [degrades performance]'
-   )
-   config_args.extend(self.enable_or_disable('memchecker'))
-
-In this example, specifying the variant ``+memchecker`` will generate
-the following configuration options:
-
-.. code-block:: console
-
-   --enable-memchecker
-
-"""""""""""""""
-with_or_without
-"""""""""""""""
-
-Autotools flags for more complex variants, including boolean variants
-and multi-valued variants, can be automatically generated by calling
-the ``with_or_without`` method.
-
-.. code-block:: python
-
-   variant(
-       'schedulers',
-       values=disjoint_sets(
-           ('auto',), ('alps', 'lsf', 'tm', 'slurm', 'sge', 'loadleveler')
-       ).with_non_feature_values('auto', 'none'),
-       description="List of schedulers for which support is enabled; "
-       "'auto' lets openmpi determine",
-   )
-   if 'schedulers=auto' not in spec:
-       config_args.extend(self.with_or_without('schedulers'))
-
-In this example, specifying the variant ``schedulers=slurm,sge`` will
-generate the following configuration options:
-
-.. code-block:: console
-
-   --with-slurm --with-sge
-
-``enable_or_disable`` is actually functionally equivalent with
-``with_or_without``, and accepts the same arguments and variant types;
-but idiomatic autotools packages often follow these naming
-conventions.
-
-""""""""""""""""
-activation_value
-""""""""""""""""
-
-Autotools parameters that require an option can still be automatically
-generated, using the ``activation_value`` argument to
-``with_or_without`` (or, rarely, ``enable_or_disable``).
-
-.. code-block:: python
-
-   variant(
-      'fabrics',
-       values=disjoint_sets(
-           ('auto',), ('psm', 'psm2', 'verbs', 'mxm', 'ucx', 'libfabric')
-       ).with_non_feature_values('auto', 'none'),
-       description="List of fabrics that are enabled; "
-       "'auto' lets openmpi determine",
-   )
-   if 'fabrics=auto' not in spec:
-       config_args.extend(self.with_or_without('fabrics',
-           activation_value='prefix'))
-
-``activation_value`` accepts a callable that generates the configure
-parameter value given the variant value; but the special value
-``prefix`` tells Spack to automatically use the dependenency's
-installation prefix, which is the most common use for such
-parameters. In this example, specifying the variant
-``fabrics=libfabric`` will generate the following configuration
-options:
-
-.. code-block:: console
-
-   --with-libfabric=</path/to/libfabric>
-
-"""""""""""""""""""""""
-The ``variant`` keyword
-"""""""""""""""""""""""
-
-When Spack variants and configure flags do not correspond one-to-one, the
-``variant`` keyword can be passed to ``with_or_without`` and
-``enable_or_disable``. For example:
-
-.. code-block:: python
-
-   variant('debug_tools', default=False)
-   config_args += self.enable_or_disable('debug-tools', variant='debug_tools')
-
-Or when one variant controls multiple flags:
-
-.. code-block:: python
-
-   variant('debug_tools', default=False)
-   config_args += self.with_or_without('memchecker', variant='debug_tools')
-   config_args += self.with_or_without('profiler', variant='debug_tools')
-
-""""""""""""""""""""
-Activation overrides
-""""""""""""""""""""
-
-Finally, the behavior of either ``with_or_without`` or
-``enable_or_disable`` can be overridden for specific variant
-values. This is most useful for multi-values variants where some of
-the variant values require atypical behavior.
-
-.. code-block:: python
-
-   def with_or_without_verbs(self, activated):
-       # Up through version 1.6, this option was named --with-openib.
-       # In version 1.7, it was renamed to be --with-verbs.
-       opt = 'verbs' if self.spec.satisfies('@1.7:') else 'openib'
-       if not activated:
-           return '--without-{0}'.format(opt)
-       return '--with-{0}={1}'.format(opt, self.spec['rdma-core'].prefix)
-
-Defining ``with_or_without_verbs`` overrides the behavior of a
-``fabrics=verbs`` variant, changing the configure-time option to
-``--with-openib`` for older versions of the package and specifying an
-alternative dependency name:
-
-.. code-block::
-
-   --with-openib=</path/to/rdma-core>
-
-^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
-Configure script in a sub-directory
-^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
-
-Occasionally, developers will hide their source code and ``configure``
-script in a subdirectory like ``src``. If this happens, Spack won't
-be able to automatically detect the build system properly when running
-``spack create``. You will have to manually change the package base
-class and tell Spack where the ``configure`` script resides. You can
-do this like so:
-
-.. code-block:: python
-
-   configure_directory = 'src'
-
-^^^^^^^^^^^^^^^^^^^^^^
-Building out of source
-^^^^^^^^^^^^^^^^^^^^^^
-
-Some packages like ``gcc`` recommend building their software in a
-different directory than the source code to prevent build pollution.
-This can be done using the ``build_directory`` variable:
-
-.. code-block:: python
-
-   build_directory = 'spack-build'
-
-By default, Spack will build the package in the same directory that
-contains the ``configure`` script
-
-^^^^^^^^^^^^^^^^^^^^^^^^^
-Build and install targets
-^^^^^^^^^^^^^^^^^^^^^^^^^
-
-For most Autotools packages, the usual:
-
-.. code-block:: console
-
-   $ configure
-   $ make
-   $ make install
-
-is sufficient to install the package. However, if you need to run
-make with any other targets, for example, to build an optional
-library or build the documentation, you can add these like so:
-
-.. code-block:: python
-
-   build_targets = ['all', 'docs']
-   install_targets = ['install', 'docs']
-
-^^^^^^^
-Testing
-^^^^^^^
-
-Autotools-based packages typically provide unit testing via the
-``check`` and ``installcheck`` targets. If you build your software
-with ``spack install --test=root``, Spack will check for the presence
-of a ``check`` or ``test`` target in the Makefile and run
-``make check`` for you. After installation, it will check for an
-``installcheck`` target and run ``make installcheck`` if it finds one.
-
-^^^^^^^^^^^^^^^^^^^^^^
-External documentation
-^^^^^^^^^^^^^^^^^^^^^^
-
-For more information on the Autotools build system, see:
-https://www.gnu.org/software/automake/manual/html_node/Autotools-Introduction.html

lib/spack/docs/build_systems/bundlepackage.rst

@@ -1,52 +0,0 @@
-.. Copyright 2013-2021 Lawrence Livermore National Security, LLC and other
-   Spack Project Developers. See the top-level COPYRIGHT file for details.
-
-   SPDX-License-Identifier: (Apache-2.0 OR MIT)
-
-.. _bundlepackage:
-
--------------
-BundlePackage
--------------
-
-``BundlePackage`` represents a set of packages that are expected to work well
-together, such as a collection of commonly used software libraries.  The
-associated software is specified as bundle dependencies.
-
-
-^^^^^^^^
-Creation
-^^^^^^^^
-
-Be sure to specify the ``bundle`` template if you are using ``spack create``
-to generate a package from the template.  For example, use the following
-command to create a bundle package whose class name will be ``Mybundle``:
-
-.. code-block:: console
-
-    $ spack create --template bundle --name mybundle
-
-
-
-^^^^^^
-Phases
-^^^^^^
-
-The ``BundlePackage`` base class does not provide any phases by default
-since the bundle does not represent a build system.
-
-
-^^^
-URL
-^^^
-
-The ``url`` property does not have meaning since there is no package-specific
-code to fetch.
-
-
-^^^^^^^
-Version
-^^^^^^^
-
-At least one ``version`` must be specified in order for the package to
-build.

lib/spack/docs/build_systems/cmakepackage.rst

@@ -1,282 +0,0 @@
-.. Copyright 2013-2021 Lawrence Livermore National Security, LLC and other
-   Spack Project Developers. See the top-level COPYRIGHT file for details.
-
-   SPDX-License-Identifier: (Apache-2.0 OR MIT)
-
-.. _cmakepackage:
-
-------------
-CMakePackage
-------------
-
-Like Autotools, CMake is a widely-used build-script generator. Designed
-by Kitware, CMake is the most popular build system for new C, C++, and
-Fortran projects, and many older projects are switching to it as well.
-
-Unlike Autotools, CMake can generate build scripts for builders other
-than Make: Ninja, Visual Studio, etc. It is therefore cross-platform,
-whereas Autotools is Unix-only.
-
-^^^^^^
-Phases
-^^^^^^
-
-The ``CMakePackage`` base class comes with the following phases:
-
-#. ``cmake`` - generate the Makefile
-#. ``build`` - build the package
-#. ``install`` - install the package
-
-By default, these phases run:
-
-.. code-block:: console
-
-   $ mkdir spack-build
-   $ cd spack-build
-   $ cmake .. -DCMAKE_INSTALL_PREFIX=/path/to/installation/prefix
-   $ make
-   $ make test  # optional
-   $ make install
-
-
-A few more flags are passed to ``cmake`` by default, including flags
-for setting the build type and flags for locating dependencies. Of
-course, you may need to add a few arguments yourself.
-
-^^^^^^^^^^^^^^^
-Important files
-^^^^^^^^^^^^^^^
-
-A CMake-based package can be identified by the presence of a
-``CMakeLists.txt`` file. This file defines the build flags that can be
-passed to the cmake invocation, as well as linking instructions. If
-you are familiar with CMake, it can prove very useful for determining
-dependencies and dependency version requirements.
-
-One thing to look for is the ``cmake_minimum_required`` function:
-
-.. code-block:: cmake
-
-   cmake_minimum_required(VERSION 2.8.12)
-
-
-This means that CMake 2.8.12 is the earliest release that will work.
-You should specify this in a ``depends_on`` statement.
-
-CMake-based packages may also contain ``CMakeLists.txt`` in subdirectories.
-This modularization helps to manage complex builds in a hierarchical
-fashion. Sometimes these nested ``CMakeLists.txt`` require additional
-dependencies not mentioned in the top-level file.
-
-There's also usually a ``cmake`` or ``CMake`` directory containing
-additional macros, find scripts, etc. These may prove useful in
-determining dependency version requirements.
-
-^^^^^^^^^^^^^^^^^^^^^^^^^
-Build system dependencies
-^^^^^^^^^^^^^^^^^^^^^^^^^
-
-Every package that uses the CMake build system requires a ``cmake``
-dependency. Since this is always the case, the ``CMakePackage`` base
-class already contains:
-
-.. code-block:: python
-
-   depends_on('cmake', type='build')
-
-
-If you need to specify a particular version requirement, you can
-override this in your package:
-
-.. code-block:: python
-
-   depends_on('cmake@2.8.12:', type='build')
-
-
-^^^^^^^^^^^^^^^^^^^
-Finding cmake flags
-^^^^^^^^^^^^^^^^^^^
-
-To get a list of valid flags that can be passed to ``cmake``, run the
-following command in the directory that contains ``CMakeLists.txt``:
-
-.. code-block:: console
-
-   $ cmake . -LAH
-
-
-CMake will start by checking for compilers and dependencies. Eventually
-it will begin to list build options. You'll notice that most of the
-build options at the top are prefixed with ``CMAKE_``. You can safely
-ignore most of these options as Spack already sets them for you. This
-includes flags needed to locate dependencies, RPATH libraries, set the
-installation directory, and set the build type.
-
-The rest of the flags are the ones you should consider adding to your
-package. They often include flags to enable/disable support for certain
-features and locate specific dependencies. One thing you'll notice that
-makes CMake different from Autotools is that CMake has an understanding
-of build flag hierarchy. That is, certain flags will not display unless
-their parent flag has been selected. For example, flags to specify the
-``lib`` and ``include`` directories for a package might not appear
-unless CMake found the dependency it was looking for. You may need to
-manually specify certain flags to explore the full depth of supported
-build flags, or check the ``CMakeLists.txt`` yourself.
-
-^^^^^^^^^^^^^^^^^^^^^
-Adding flags to cmake
-^^^^^^^^^^^^^^^^^^^^^
-
-To add additional flags to the ``cmake`` call, simply override the
-``cmake_args`` function. The following example defines values for the flags
-``WHATEVER``, ``ENABLE_BROKEN_FEATURE``, ``DETECT_HDF5``, and ``THREADS`` with
-and without the :meth:`~spack.build_systems.cmake.CMakePackage.define` and
-:meth:`~spack.build_systems.cmake.CMakePackage.define_from_variant` helper functions:
-
-.. code-block:: python
-
-   def cmake_args(self):
-       args = [
-           '-DWHATEVER:STRING=somevalue',
-           self.define('ENABLE_BROKEN_FEATURE', False),
-           self.define_from_variant('DETECT_HDF5', 'hdf5'),
-           self.define_from_variant('THREADS'), # True if +threads
-       ]
-
-       return args
-
-
-^^^^^^^^^^
-Generators
-^^^^^^^^^^
-
-CMake and Autotools are build-script generation tools; they "generate"
-the Makefiles that are used to build a software package. CMake actually
-supports multiple generators, not just Makefiles. Another common
-generator is Ninja. To switch to the Ninja generator, simply add:
-
-.. code-block:: python
-
-   generator = 'Ninja'
-
-
-``CMakePackage`` defaults to "Unix Makefiles". If you switch to the
-Ninja generator, make sure to add:
-
-.. code-block:: python
-
-   depends_on('ninja', type='build')
-
-to the package as well. Aside from that, you shouldn't need to do
-anything else. Spack will automatically detect that you are using
-Ninja and run:
-
-.. code-block:: console
-
-   $ cmake .. -G Ninja
-   $ ninja
-   $ ninja install
-
-Spack currently only supports "Unix Makefiles" and "Ninja" as valid
-generators, but it should be simple to add support for alternative
-generators. For more information on CMake generators, see:
-https://cmake.org/cmake/help/latest/manual/cmake-generators.7.html
-
-^^^^^^^^^^^^^^^^
-CMAKE_BUILD_TYPE
-^^^^^^^^^^^^^^^^
-
-Every CMake-based package accepts a ``-DCMAKE_BUILD_TYPE`` flag to
-dictate which level of optimization to use. In order to ensure
-uniformity across packages, the ``CMakePackage`` base class adds
-a variant to control this:
-
-.. code-block:: python
-
-   variant('build_type', default='RelWithDebInfo',
-           description='CMake build type',
-           values=('Debug', 'Release', 'RelWithDebInfo', 'MinSizeRel'))
-
-However, not every CMake package accepts all four of these options.
-Grep the ``CMakeLists.txt`` file to see if the default values are
-missing or replaced. For example, the
-`dealii <https://github.com/spack/spack/blob/develop/var/spack/repos/builtin/packages/dealii/package.py>`_
-package overrides the default variant with:
-
-.. code-block:: python
-
-   variant('build_type', default='DebugRelease',
-           description='The build type to build',
-           values=('Debug', 'Release', 'DebugRelease'))
-
-For more information on ``CMAKE_BUILD_TYPE``, see:
-https://cmake.org/cmake/help/latest/variable/CMAKE_BUILD_TYPE.html
-
-^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
-CMakeLists.txt in a sub-directory
-^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
-
-Occasionally, developers will hide their source code and ``CMakeLists.txt``
-in a subdirectory like ``src``. If this happens, Spack won't
-be able to automatically detect the build system properly when running
-``spack create``. You will have to manually change the package base
-class and tell Spack where ``CMakeLists.txt`` resides. You can do this
-like so:
-
-.. code-block:: python
-
-   root_cmakelists_dir = 'src'
-
-
-Note that this path is relative to the root of the extracted tarball,
-not to the ``build_directory``. It defaults to the current directory.
-
-^^^^^^^^^^^^^^^^^^^^^^
-Building out of source
-^^^^^^^^^^^^^^^^^^^^^^
-
-By default, Spack builds every ``CMakePackage`` in a ``spack-build``
-sub-directory. If, for whatever reason, you would like to build in a
-different sub-directory, simply override ``build_directory`` like so:
-
-.. code-block:: python
-
-   build_directory = 'my-build'
-
-^^^^^^^^^^^^^^^^^^^^^^^^^
-Build and install targets
-^^^^^^^^^^^^^^^^^^^^^^^^^
-
-For most CMake packages, the usual:
-
-.. code-block:: console
-
-   $ cmake
-   $ make
-   $ make install
-
-is sufficient to install the package. However, if you need to run
-make with any other targets, for example, to build an optional
-library or build the documentation, you can add these like so:
-
-.. code-block:: python
-
-   build_targets = ['all', 'docs']
-   install_targets = ['install', 'docs']
-
-^^^^^^^
-Testing
-^^^^^^^
-
-CMake-based packages typically provide unit testing via the
-``test`` target. If you build your software with ``--test=root``,
-Spack will check for the presence of a ``test`` target in the
-Makefile and run ``make test`` for you. If you want to run a
-different test instead, simply override the ``check`` method.
-
-^^^^^^^^^^^^^^^^^^^^^^
-External documentation
-^^^^^^^^^^^^^^^^^^^^^^
-
-For more information on the CMake build system, see:
-https://cmake.org/cmake/help/latest/

lib/spack/docs/build_systems/cudapackage.rst

@@ -1,128 +0,0 @@
-.. Copyright 2013-2021 Lawrence Livermore National Security, LLC and other
-   Spack Project Developers. See the top-level COPYRIGHT file for details.
-
-   SPDX-License-Identifier: (Apache-2.0 OR MIT)
-
-.. _cudapackage:
-
------------
-CudaPackage
------------
-
-Different from other packages, ``CudaPackage`` does not represent a build system.
-Instead its goal is to simplify and unify usage of ``CUDA`` in other packages by providing a `mixin-class <https://en.wikipedia.org/wiki/Mixin>`_.
-
-You can find source for the package at
-`<https://github.com/spack/spack/blob/develop/lib/spack/spack/build_systems/cuda.py>`__.
-
-^^^^^^^^
-Variants
-^^^^^^^^
-
-This package provides the following variants:
-
-* **cuda**
-
-  This variant is used to enable/disable building with ``CUDA``. The default
-  is disabled (or ``False``).
-
-* **cuda_arch**
-
-  This variant supports the optional specification of the architecture.
-  Valid values are maintained in the ``cuda_arch_values`` property and
-  are the numeric character equivalent of the compute capability version
-  (e.g., '10' for version 1.0). Each provided value affects associated
-  ``CUDA`` dependencies and compiler conflicts.
-
-  GPUs and their compute capability versions are listed at
-  https://developer.nvidia.com/cuda-gpus .
-
-^^^^^^^^^
-Conflicts
-^^^^^^^^^
-
-Conflicts are used to prevent builds with known bugs or issues. While
-base ``CUDA`` conflicts have been included with this package, you may
-want to add more for your software.
-
-For example, if your package requires ``cuda_arch`` to be specified when
-``cuda`` is enabled, you can add the following conflict to your package
-to terminate such build attempts with a suitable message:
-
-.. code-block:: python
-
-    conflicts('cuda_arch=none', when='+cuda',
-              msg='CUDA architecture is required')
-
-Similarly, if your software does not support all versions of the property,
-you could add ``conflicts`` to your package for those versions.  For example,
-suppose your software does not work with CUDA compute capability versions
-prior to SM 5.0 (``50``).  You can add the following code to display a
-custom message should a user attempt such a build:
-
-.. code-block:: python
-
-    unsupported_cuda_archs = [
-        '10', '11', '12', '13',
-        '20', '21',
-        '30', '32', '35', '37'
-    ]
-    for value in unsupported_cuda_archs:
-        conflicts('cuda_arch={0}'.format(value), when='+cuda',
-                  msg='CUDA architecture {0} is not supported'.format(value))
-
-^^^^^^^
-Methods
-^^^^^^^
-
-This package provides one custom helper method, which is used to build
-standard CUDA compiler flags.
-
-**cuda_flags**
-
-    This built-in static method returns a list of command line flags 
-    for the chosen ``cuda_arch`` value(s).  The flags are intended to
-    be passed to the CUDA compiler driver (i.e., ``nvcc``).
-
-    This method must be explicitly called when you are creating the
-    arguments for your build in order to use the values.
-
-^^^^^
-Usage
-^^^^^
-
-This helper package can be added to your package by adding it as a base
-class of your package.  For example, you can add it to your
-:ref:`CMakePackage <cmakepackage>`-based package as follows:
-
-.. code-block:: python
-   :emphasize-lines: 1,7-16
-
-    class MyCudaPackage(CMakePackage, CudaPackage):
-        ...
-        def cmake_args(self):
-            spec = self.spec
-            args = []
-            ...
-            if '+cuda' in spec:
-                # Set up the cuda macros needed by the build
-                args.append('-DWITH_CUDA=ON')
-                cuda_arch_list = spec.variants['cuda_arch'].value
-                cuda_arch = cuda_arch_list[0]
-                if cuda_arch != 'none':
-                    args.append('-DCUDA_FLAGS=-arch=sm_{0}'.format(cuda_arch))
-            else:
-                # Ensure build with cuda is disabled
-                args.append('-DWITH_CUDA=OFF')
-            ...
-            return args
-
-assuming only the ``WITH_CUDA`` and ``CUDA_FLAGS`` flags are required.
-You will need to customize options as needed for your build.
-
-This example also illustrates how to check for the ``cuda`` variant using
-``self.spec`` and how to retrieve the ``cuda_arch`` variant's value, which
-is a list, using ``self.spec.variants['cuda_arch'].value``.
-
-With over 70 packages using ``CudaPackage`` as of January 2021 there are
-lots of examples to choose from to get more ideas for using this package.

lib/spack/docs/build_systems/custompackage.rst

@@ -1,213 +0,0 @@
-.. Copyright 2013-2021 Lawrence Livermore National Security, LLC and other
-   Spack Project Developers. See the top-level COPYRIGHT file for details.
-
-   SPDX-License-Identifier: (Apache-2.0 OR MIT)
-
-.. _custompackage:
-
---------------------
-Custom Build Systems
---------------------
-
-While the built-in build systems should meet your needs for the
-vast majority of packages, some packages provide custom build scripts.
-This guide is intended for the following use cases:
-
-* Packaging software with its own custom build system
-* Adding support for new build systems
-
-If you want to add support for a new build system, a good place to
-start is to look at the definitions of other build systems. This guide
-focuses mostly on how Spack's build systems work.
-
-In this guide, we will be using the
-`perl <https://github.com/spack/spack/blob/develop/var/spack/repos/builtin/packages/perl/package.py>`_ and
-`cmake <https://github.com/spack/spack/blob/develop/var/spack/repos/builtin/packages/cmake/package.py>`_
-packages as examples. ``perl``'s build system is a hand-written
-``Configure`` shell script, while ``cmake`` bootstraps itself during
-installation. Both of these packages require custom build systems.
-
-^^^^^^^^^^
-Base class
-^^^^^^^^^^
-
-If your package does not belong to any of the built-in build
-systems that Spack already supports, you should inherit from the
-``Package`` base class. ``Package`` is a simple base class with a
-single phase: ``install``. If your package is simple, you may be able
-to simply write an ``install`` method that gets the job done. However,
-if your package is more complex and installation involves multiple
-steps, you should add separate phases as mentioned in the next section.
-
-If you are creating a new build system base class, you should inherit
-from ``PackageBase``. This is the superclass for all build systems in
-Spack.
-
-^^^^^^
-Phases
-^^^^^^
-
-The most important concept in Spack's build system support is the idea
-of phases. Each build system defines a set of phases that are necessary
-to install the package. They usually follow some sort of "configure",
-"build", "install" guideline, but any of those phases may be missing
-or combined with another phase.
-
-If you look at the ``perl`` package, you'll see:
-
-.. code-block:: python
-
-   phases = ['configure', 'build', 'install']
-
-Similarly, ``cmake`` defines:
-
-.. code-block:: python
-
-   phases = ['bootstrap', 'build', 'install']
-
-If we look at the ``cmake`` example, this tells Spack's ``PackageBase``
-class to run the ``bootstrap``, ``build``, and ``install`` functions
-in that order. It is now up to you to define these methods.
-
-^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
-Phase and phase_args functions
-^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
-
-If we look at ``perl``, we see that it defines a ``configure`` method:
-
-.. code-block:: python
-
-   def configure(self, spec, prefix):
-       configure = Executable('./Configure')
-       configure(*self.configure_args())
-
-There is also a corresponding ``configure_args`` function that handles
-all of the arguments to pass to ``Configure``, just like in
-``AutotoolsPackage``. Comparatively, the ``build`` and ``install``
-phases are pretty simple:
-
-.. code-block:: python
-
-   def build(self, spec, prefix):
-       make()
-
-   def install(self, spec, prefix):
-       make('install')
-
-The ``cmake`` package looks very similar, but with a ``bootstrap``
-function instead of ``configure``:
-
-.. code-block:: python
-
-   def bootstrap(self, spec, prefix):
-       bootstrap = Executable('./bootstrap')
-       bootstrap(*self.bootstrap_args())
-
-   def build(self, spec, prefix):
-       make()
-
-   def install(self, spec, prefix):
-       make('install')
-
-Again, there is a ``boostrap_args`` function that determines the
-correct bootstrap flags to use.
-
-^^^^^^^^^^^^^^^^^^^^
-run_before/run_after
-^^^^^^^^^^^^^^^^^^^^
-
-Occasionally, you may want to run extra steps either before or after
-a given phase. This applies not just to custom build systems, but to
-existing build systems as well. You may need to patch a file that is
-generated by configure, or install extra files in addition to what
-``make install`` copies to the installation prefix. This is where
-``@run_before`` and ``@run_after`` come in.
-
-These Python decorators allow you to write functions that are called
-before or after a particular phase. For example, in ``perl``, we see:
-
-.. code-block:: python
-
-   @run_after('install')
-   def install_cpanm(self):
-       spec = self.spec
-
-       if '+cpanm' in spec:
-           with working_dir(join_path('cpanm', 'cpanm')):
-               perl = spec['perl'].command
-               perl('Makefile.PL')
-               make()
-               make('install')
-
-This extra step automatically installs ``cpanm`` in addition to the
-base Perl installation.
-
-^^^^^^^^^^^^^^^^^^^^^
-on_package_attributes
-^^^^^^^^^^^^^^^^^^^^^
-
-The ``run_before``/``run_after`` logic discussed above becomes
-particularly powerful when combined with the ``@on_package_attributes``
-decorator. This decorator allows you to conditionally run certain
-functions depending on the attributes of that package. The most
-common example is conditional testing. Many unit tests are prone to
-failure, even when there is nothing wrong with the installation.
-Unfortunately, non-portable unit tests and tests that are
-"supposed to fail" are more common than we would like. Instead of
-always running unit tests on installation, Spack lets users
-conditionally run tests with the ``--test=root`` flag.
-
-If we wanted to define a function that would conditionally run
-if and only if this flag is set, we would use the following line:
-
-.. code-block:: python
-
-   @on_package_attributes(run_tests=True)
-
-^^^^^^^
-Testing
-^^^^^^^
-
-Let's put everything together and add unit tests to be optionally run
-during the installation of our package.
-In the ``perl`` package, we can see:
-
-.. code-block:: python
-
-   @run_after('build')
-   @on_package_attributes(run_tests=True)
-   def test(self):
-       make('test')
-
-As you can guess, this runs ``make test`` *after* building the package,
-if and only if testing is requested. Again, this is not specific to
-custom build systems, it can be added to existing build systems as well.
-
-.. warning::
-
-   The order of decorators matters. The following ordering:
-
-   .. code-block:: python
-
-      @run_after('install')
-      @on_package_attributes(run_tests=True)
-
-   works as expected. However, if you reverse the ordering:
-
-   .. code-block:: python
-
-      @on_package_attributes(run_tests=True)
-      @run_after('install')
-
-   the tests will always be run regardless of whether or not
-   ``--test=root`` is requested. See https://github.com/spack/spack/issues/3833
-   for more information
-
-Ideally, every package in Spack will have some sort of test to ensure
-that it was built correctly. It is up to the package authors to make
-sure this happens. If you are adding a package for some software and
-the developers list commands to test the installation, please add these
-tests to your ``package.py``.
-
-For more information on other forms of package testing, refer to
-:ref:`Checking an installation <checking_an_installation>`.

lib/spack/docs/build_systems/inteloneapipackage.rst

@@ -1,155 +0,0 @@
-.. Copyright 2013-2021 Lawrence Livermore National Security, LLC and other
-   Spack Project Developers. See the top-level COPYRIGHT file for details.
-
-   SPDX-License-Identifier: (Apache-2.0 OR MIT)
-
-.. _inteloneapipackage:
-
-
-====================
- IntelOneapiPackage
-====================
-
-
-.. contents::
-
-
-oneAPI packages in Spack
-========================
-
-Spack can install and use the Intel oneAPI products. You may either
-use spack to install the oneAPI tools or use the `Intel
-installers`_. After installation, you may use the tools directly, or
-use Spack to build packages with the tools.
-
-The Spack Python class ``IntelOneapiPackage`` is a base class that is
-used by ``IntelOneapiCompilers``, ``IntelOneapiMkl``,
-``IntelOneapiTbb`` and other classes to implement the oneAPI
-packages. See the :ref:`package-list` for the full list of available
-oneAPI packages or use::
-
-  spack list -d oneAPI
-
-For more information on a specific package, do::
-
-  spack info <package-name>
-
-Intel no longer releases new versions of Parallel Studio, which can be
-used in Spack via the :ref:`intelpackage`. All of its components can
-now be found in oneAPI. 
-
-Examples
-========
-
-Building a Package With icx
----------------------------
-
-In this example, we build patchelf with ``icc`` and ``icx``. The
-compilers are installed with spack.
-
-Install the oneAPI compilers::
-
-  spack install intel-oneapi-compilers
-
-Add the compilers to your ``compilers.yaml`` so spack can use them::
-
-  spack compiler add `spack location -i intel-oneapi-compilers`/compiler/latest/linux/bin/intel64
-  spack compiler add `spack location -i intel-oneapi-compilers`/compiler/latest/linux/bin
-
-Verify that the compilers are available::
-
-  spack compiler list
-
-The ``intel-oneapi-compilers`` package includes 2 families of
-compilers:
-
-* ``intel``: ``icc``, ``icpc``, ``ifort``. Intel's *classic*
-  compilers.
-* ``oneapi``: ``icx``, ``icpx``, ``ifx``. Intel's new generation of
-  compilers based on LLVM.
-
-To build the ``patchelf`` Spack package with ``icc``, do::
-
-  spack install patchelf%intel
-
-To build with with ``icx``, do ::
-
-  spack install patchelf%oneapi
-
-Using oneAPI MPI to Satisfy a Virtual Dependence
-------------------------------------------------------
-
-The ``hdf5`` package works with any compatible MPI implementation. To
-build ``hdf5`` with Intel oneAPI MPI do::
-
-  spack install hdf5 +mpi ^intel-oneapi-mpi
-
-Using an Externally Installed oneAPI
-====================================
-
-Spack can also use oneAPI tools that are manually installed with
-`Intel Installers`_.  The procedures for configuring Spack to use
-external compilers and libraries are different.
-
-Compilers
----------
-
-To use the compilers, add some information about the installation to
-``compilers.yaml``. For most users, it is sufficient to do::
-
-  spack compiler add /opt/intel/oneapi/compiler/latest/linux/bin/intel64
-  spack compiler add /opt/intel/oneapi/compiler/latest/linux/bin
-
-Adapt the paths above if you did not install the tools in the default
-location. After adding the compilers, using them is the same
-as if you had installed the ``intel-oneapi-compilers`` package.
-Another option is to manually add the configuration to
-``compilers.yaml`` as described in :ref:`Compiler configuration
-<compiler-config>`.
-
-Libraries
----------
-
-If you want Spack to use MKL that you have installed without Spack in
-the default location, then add the following to
-``~/.spack/packages.yaml``, adjusting the version as appropriate::
-
-  intel-oneapi-mkl:
-    externals:
-    - spec: intel-oneapi-mkl@2021.1.1
-      prefix: /opt/intel/oneapi/
-
-
-Using oneAPI Tools Installed by Spack
-=====================================
-
-Spack can be a convenient way to install and configure compilers and
-libaries, even if you do not intend to build a Spack package. If you
-want to build a Makefile project using Spack-installed oneAPI compilers,
-then use spack to configure your environment::
-
-  spack load intel-oneapi-compilers
-
-And then you can build with::
-
-  CXX=icpx make
-
-You can also use Spack-installed libraries. For example::
-
-  spack load intel-oneapi-mkl
-
-Will update your environment CPATH, LIBRARY_PATH, and other
-environment variables for building an application with MKL.
-
-More information
-================
-
-This section describes basic use of oneAPI, especially if it has
-changed compared to Parallel Studio. See :ref:`intelpackage` for more
-information on :ref:`intel-virtual-packages`,
-:ref:`intel-unrelated-packages`,
-:ref:`intel-integrating-external-libraries`, and
-:ref:`using-mkl-tips`.
-
-
-.. _`Intel installers`: https://software.intel.com/content/www/us/en/develop/documentation/installation-guide-for-intel-oneapi-toolkits-linux/top.html

lib/spack/docs/build_systems/makefilepackage.rst

@@ -1,311 +0,0 @@
-.. Copyright 2013-2021 Lawrence Livermore National Security, LLC and other
-   Spack Project Developers. See the top-level COPYRIGHT file for details.
-
-   SPDX-License-Identifier: (Apache-2.0 OR MIT)
-
-.. _makefilepackage:
-
----------------
-MakefilePackage
----------------
-
-The most primitive build system a package can use is a plain Makefile.
-Makefiles are simple to write for small projects, but they usually
-require you to edit the Makefile to set platform and compiler-specific
-variables.
-
-^^^^^^
-Phases
-^^^^^^
-
-The ``MakefilePackage`` base class comes with 3 phases:
-
-#. ``edit`` - edit the Makefile
-#. ``build`` - build the project
-#. ``install`` - install the project
-
-By default, ``edit`` does nothing, but you can override it to replace
-hard-coded Makefile variables. The ``build`` and ``install`` phases
-run:
-
-.. code-block:: console
-
-   $ make
-   $ make install
-
-
-^^^^^^^^^^^^^^^
-Important files
-^^^^^^^^^^^^^^^
-
-The main file that matters for a ``MakefilePackage`` is the Makefile.
-This file will be named one of the following ways:
-
-* GNUmakefile (only works with GNU Make)
-* Makefile (most common)
-* makefile
-
-Some Makefiles also *include* other configuration files. Check for an
-``include`` directive in the Makefile.
-
-^^^^^^^^^^^^^^^^^^^^^^^^^
-Build system dependencies
-^^^^^^^^^^^^^^^^^^^^^^^^^
-
-Spack assumes that the operating system will have a valid ``make`` utility
-installed already, so you don't need to add a dependency on ``make``.
-However, if the package uses a ``GNUmakefile`` or the developers recommend
-using GNU Make, you should add a dependency on ``gmake``:
-
-.. code-block:: python
-
-   depends_on('gmake', type='build')
-
-
-^^^^^^^^^^^^^^^^^^^^^^^^^^
-Types of Makefile packages
-^^^^^^^^^^^^^^^^^^^^^^^^^^
-
-Most of the work involved in packaging software that uses Makefiles
-involves overriding or replacing hard-coded variables. Many packages
-make the mistake of hard-coding compilers, usually for GCC or Intel.
-This is fine if you happen to be using that particular compiler, but
-Spack is designed to work with *any* compiler, and you need to ensure
-that this is the case.
-
-Depending on how the Makefile is designed, there are 4 common strategies
-that can be used to set or override the appropriate variables:
-
-"""""""""""""""""""""
-Environment variables
-"""""""""""""""""""""
-
-Make has multiple types of
-`assignment operators <https://www.gnu.org/software/make/manual/make.html#Setting>`_.
-Some Makefiles use ``=`` to assign variables. The only way to override
-these variables is to edit the Makefile or override them on the
-command-line. However, Makefiles that use ``?=`` for assignment honor
-environment variables. Since Spack already sets ``CC``, ``CXX``, ``F77``,
-and ``FC``, you won't need to worry about setting these variables. If
-there are any other variables you need to set, you can do this in the
-``edit`` method:
-
-.. code-block:: python
-
-   def edit(self, spec, prefix):
-       env['PREFIX'] = prefix
-       env['BLASLIB'] = spec['blas'].libs.ld_flags
-
-
-`cbench <https://github.com/spack/spack/blob/develop/var/spack/repos/builtin/packages/cbench/package.py>`_
-is a good example of a simple package that does this, while
-`esmf <https://github.com/spack/spack/blob/develop/var/spack/repos/builtin/packages/esmf/package.py>`_
-is a good example of a more complex package.
-
-""""""""""""""""""""""
-Command-line arguments
-""""""""""""""""""""""
-
-If the Makefile ignores environment variables, the next thing to try
-is command-line arguments. You can do this by overriding the
-``build_targets`` attribute. If you don't need access to the spec,
-you can do this like so:
-
-.. code-block:: python
-
-   build_targets = ['CC=cc']
-
-
-If you do need access to the spec, you can create a property like so:
-
-.. code-block:: python
-
-   @property
-   def build_targets(self):
-       spec = self.spec
-
-       return [
-           'CC=cc',
-           'BLASLIB={0}'.format(spec['blas'].libs.ld_flags),
-       ]
-
-
-`cloverleaf <https://github.com/spack/spack/blob/develop/var/spack/repos/builtin/packages/cloverleaf/package.py>`_
-is a good example of a package that uses this strategy.
-
-"""""""""""""
-Edit Makefile
-"""""""""""""
-
-Some Makefiles are just plain stubborn and will ignore command-line
-variables. The only way to ensure that these packages build correctly
-is to directly edit the Makefile. Spack provides a ``FileFilter`` class
-and a ``filter_file`` method to help with this. For example:
-
-.. code-block:: python
-
-   def edit(self, spec, prefix):
-       makefile = FileFilter('Makefile')
-
-       makefile.filter(r'^\s*CC\s*=.*',  'CC = '  + spack_cc)
-       makefile.filter(r'^\s*CXX\s*=.*', 'CXX = ' + spack_cxx)
-       makefile.filter(r'^\s*F77\s*=.*', 'F77 = ' + spack_f77)
-       makefile.filter(r'^\s*FC\s*=.*',  'FC = '  + spack_fc)
-
-
-`stream <https://github.com/spack/spack/blob/develop/var/spack/repos/builtin/packages/stream/package.py>`_
-is a good example of a package that involves editing a Makefile to set
-the appropriate variables.
-
-"""""""""""
-Config file
-"""""""""""
-
-More complex packages often involve Makefiles that *include* a
-configuration file. These configuration files are primarily composed
-of variables relating to the compiler, platform, and the location of
-dependencies or names of libraries. Since these config files are
-dependent on the compiler and platform, you will often see entire
-directories of examples for common compilers and architectures. Use
-these examples to help determine what possible values to use.
-
-If the config file is long and only contains one or two variables
-that need to be modified, you can use the technique above to edit
-the config file. However, if you end up needing to modify most of
-the variables, it may be easier to write a new file from scratch.
-
-If each variable is independent of each other, a dictionary works
-well for storing variables:
-
-.. code-block:: python
-
-   def edit(self, spec, prefix):
-       config = {
-           'CC': 'cc',
-           'MAKE': 'make',
-       }
-
-       if '+blas' in spec:
-           config['BLAS_LIBS'] = spec['blas'].libs.joined()
-
-       with open('make.inc', 'w') as inc:
-           for key in config:
-               inc.write('{0} = {1}\n'.format(key, config[key]))
-
-
-`elk <https://github.com/spack/spack/blob/develop/var/spack/repos/builtin/packages/elk/package.py>`_
-is a good example of a package that uses a dictionary to store
-configuration variables.
-
-If the order of variables is important, it may be easier to store
-them in a list:
-
-.. code-block:: python
-
-   def edit(self, spec, prefix):
-       config = [
-           'INSTALL_DIR = {0}'.format(prefix),
-           'INCLUDE_DIR = $(INSTALL_DIR)/include',
-           'LIBRARY_DIR = $(INSTALL_DIR)/lib',
-       ]
-
-       with open('make.inc', 'w') as inc:
-           for var in config:
-               inc.write('{0}\n'.format(var))
-
-
-`hpl <https://github.com/spack/spack/blob/develop/var/spack/repos/builtin/packages/hpl/package.py>`_
-is a good example of a package that uses a list to store
-configuration variables.
-
-^^^^^^^^^^^^^^^^^^^^^^^^^^
-Variables to watch out for
-^^^^^^^^^^^^^^^^^^^^^^^^^^
-
-The following is a list of common variables to watch out for. The first
-two sections are
-`implicit variables <https://www.gnu.org/software/make/manual/html_node/Implicit-Variables.html>`_
-defined by Make and will always use the same name, while the rest are
-user-defined variables and may vary from package to package.
-
-* **Compilers**
-
-  This includes variables such as ``CC``, ``CXX``, ``F77``, ``F90``,
-  and ``FC``, as well as variables related to MPI compiler wrappers,
-  like ``MPICC`` and friends.
-
-* **Compiler flags**
-
-  This includes variables for specific compilers, like ``CFLAGS``,
-  ``CXXFLAGS``, ``F77FLAGS``, ``F90FLAGS``, ``FCFLAGS``, and ``CPPFLAGS``.
-  These variables are often hard-coded to contain flags specific to a
-  certain compiler. If these flags don't work for every compiler,
-  you may want to consider filtering them.
-
-* **Variables that enable or disable features**
-
-  This includes variables like ``MPI``, ``OPENMP``, ``PIC``, and
-  ``DEBUG``. These flags often require you to create a variant
-  so that you can either build with or without MPI support, for
-  example. These flags are often compiler-dependent. You should
-  replace them with the appropriate compiler flags, such as
-  ``self.compiler.openmp_flag`` or ``self.compiler.pic_flag``.
-
-* **Platform flags**
-
-  These flags control the type of architecture that the executable
-  is compiler for. Watch out for variables like ``PLAT`` or ``ARCH``.
-
-* **Dependencies**
-
-  Look out for variables that sound like they could be used to
-  locate dependencies, such as ``JAVA_HOME``, ``JPEG_ROOT``, or
-  ``ZLIBDIR``. Also watch out for variables that control linking,
-  such as ``LIBS``, ``LDFLAGS``, and ``INCLUDES``. These variables
-  need to be set to the installation prefix of a dependency, or
-  to the correct linker flags to link to that dependency.
-
-* **Installation prefix**
-
-  If your Makefile has an ``install`` target, it needs some way of
-  knowing where to install. By default, many packages install to
-  ``/usr`` or ``/usr/local``. Since many Spack users won't have
-  sudo privileges, it is imperative that each package is installed
-  to the proper prefix. Look for variables like ``PREFIX`` or
-  ``INSTALL``.
-
-^^^^^^^^^^^^^^^^^^^^^^^^^^^^
-Makefiles in a sub-directory
-^^^^^^^^^^^^^^^^^^^^^^^^^^^^
-
-Not every package places their Makefile in the root of the package
-tarball. If the Makefile is in a sub-directory like ``src``, you
-can tell Spack where to locate it like so:
-
-.. code-block:: python
-
-   build_directory = 'src'
-
-
-^^^^^^^^^^^^^^^^^^^
-Manual installation
-^^^^^^^^^^^^^^^^^^^
-
-Not every Makefile includes an ``install`` target. If this is the
-case, you can override the default ``install`` method to manually
-install the package:
-
-.. code-block:: python
-
-   def install(self, spec, prefix):
-       mkdir(prefix.bin)
-       install('foo', prefix.bin)
-       install_tree('lib', prefix.lib)
-
-
-^^^^^^^^^^^^^^^^^^^^^^
-External documentation
-^^^^^^^^^^^^^^^^^^^^^^
-
-For more information on reading and writing Makefiles, see:
-https://www.gnu.org/software/make/manual/make.html

lib/spack/docs/build_systems/mavenpackage.rst

@@ -1,102 +0,0 @@
-.. Copyright 2013-2021 Lawrence Livermore National Security, LLC and other
-   Spack Project Developers. See the top-level COPYRIGHT file for details.
-
-   SPDX-License-Identifier: (Apache-2.0 OR MIT)
-
-.. _mavenpackage:
-
-------------
-MavenPackage
-------------
-
-Apache Maven is a general-purpose build system that does not rely
-on Makefiles to build software. It is designed for building and
-managing and Java-based project.
-
-^^^^^^
-Phases
-^^^^^^
-
-The ``MavenPackage`` base class comes with the following phases:
-
-#. ``build`` - compile code and package into a JAR file
-#. ``install`` - copy to installation prefix
-
-By default, these phases run:
-
-.. code-block:: console
-
-   $ mvn package
-   $ install . <prefix>
-
-
-^^^^^^^^^^^^^^^
-Important files
-^^^^^^^^^^^^^^^
-
-Maven packages can be identified by the presence of a ``pom.xml`` file.
-This file lists dependencies and other metadata about the project.
-There may also be configuration files in the ``.mvn`` directory.
-
-^^^^^^^^^^^^^^^^^^^^^^^^^
-Build system dependencies
-^^^^^^^^^^^^^^^^^^^^^^^^^
-
-Maven requires the ``mvn`` executable to build the project. It also
-requires Java at both build- and run-time. Because of this, the base
-class automatically adds the following dependencies:
-
-.. code-block:: python
-
-   depends_on('java', type=('build', 'run'))
-   depends_on('maven', type='build')
-
-
-In the ``pom.xml`` file, you may see sections like:
-
-.. code-block:: xml
-
-   <requireJavaVersion>
-      <version>[1.7,)</version>
-   </requireJavaVersion>
-   <requireMavenVersion>
-      <version>[3.5.4,)</version>
-   </requireMavenVersion>
-
-
-This specifies the versions of Java and Maven that are required to
-build the package. See
-https://docs.oracle.com/middleware/1212/core/MAVEN/maven_version.htm#MAVEN402
-for a description of this version range syntax. In this case, you
-should add:
-
-.. code-block:: python
-
-   depends_on('java@7:', type='build')
-   depends_on('maven@3.5.4:', type='build')
-
-
-^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
-Passing arguments to the build phase
-^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
-
-The default build and install phases should be sufficient to install
-most packages. However, you may want to pass additional flags to
-the build phase. For example:
-
-.. code-block:: python
-
-   def build_args(self):
-       return [
-           '-Pdist,native',
-           '-Dtar',
-           '-Dmaven.javadoc.skip=true'
-       ]
-
-
-^^^^^^^^^^^^^^^^^^^^^^
-External documentation
-^^^^^^^^^^^^^^^^^^^^^^
-
-For more information on the Maven build system, see:
-https://maven.apache.org/index.html

lib/spack/docs/build_systems/mesonpackage.rst

@@ -1,138 +0,0 @@
-.. Copyright 2013-2021 Lawrence Livermore National Security, LLC and other
-   Spack Project Developers. See the top-level COPYRIGHT file for details.
-
-   SPDX-License-Identifier: (Apache-2.0 OR MIT)
-
-.. _mesonpackage:
-
-------------
-MesonPackage
-------------
-
-Much like Autotools and CMake, Meson is a build system.  But it is
-meant to be both fast and as user friendly as possible.  GNOME's goal
-is to port modules to use the Meson build system.
-
-^^^^^^
-Phases
-^^^^^^
-
-The ``MesonPackage`` base class comes with the following phases:
-
-#. ``meson`` - generate ninja files
-#. ``build`` - build the project
-#. ``install`` - install the project
-
-By default, these phases run:
-
-.. code-block:: console
-
-   $ mkdir spack-build
-   $ cd spack-build
-   $ meson .. --prefix=/path/to/installation/prefix
-   $ ninja
-   $ ninja test  # optional
-   $ ninja install
-
-
-Any of these phases can be overridden in your package as necessary.
-There is also a ``check`` method that looks for a ``test`` target
-in the build file. If a ``test`` target exists and the user runs:
-
-.. code-block:: console
-
-   $ spack install --test=root <meson-package>
-
-
-Spack will run ``ninja test`` after the build phase.
-
-^^^^^^^^^^^^^^^
-Important files
-^^^^^^^^^^^^^^^
-
-Packages that use the Meson build system can be identified by the
-presence of a ``meson.build`` file. This file declares things
-like build instructions and dependencies.
-
-One thing to look for is the ``meson_version`` key that gets passed
-to the ``project`` function:
-
-.. code-block:: none
-   :emphasize-lines: 10
-
-   project('gtk+', 'c',
-        version: '3.94.0',
-        default_options: [
-          'buildtype=debugoptimized',
-          'warning_level=1',
-          # We only need c99, but glib needs GNU-specific features
-          # https://github.com/mesonbuild/meson/issues/2289
-          'c_std=gnu99',
-        ],
-        meson_version: '>= 0.43.0',
-        license: 'LGPLv2.1+')
-
-
-This means that Meson 0.43.0 is the earliest release that will work.
-You should specify this in a ``depends_on`` statement.
-
-^^^^^^^^^^^^^^^^^^^^^^^^^
-Build system dependencies
-^^^^^^^^^^^^^^^^^^^^^^^^^
-
-At the bare minimum, packages that use the Meson build system need
-``meson`` and ```ninja``` dependencies. Since this is always the case,
-the ``MesonPackage`` base class already contains:
-
-.. code-block:: python
-
-   depends_on('meson', type='build')
-   depends_on('ninja', type='build')
-
-
-If you need to specify a particular version requirement, you can
-override this in your package:
-
-.. code-block:: python
-
-   depends_on('meson@0.43.0:', type='build')
-   depends_on('ninja', type='build')
-
-
-^^^^^^^^^^^^^^^^^^^
-Finding meson flags
-^^^^^^^^^^^^^^^^^^^
-
-To get a list of valid flags that can be passed to ``meson``, run the
-following command in the directory that contains ``meson.build``:
-
-.. code-block:: console
-
-   $ meson setup --help
-
-
-^^^^^^^^^^^^^^^^^^^^^^^^^^
-Passing arguments to meson
-^^^^^^^^^^^^^^^^^^^^^^^^^^
-
-If you need to pass any arguments to the ``meson`` call, you can
-override the ``meson_args`` method like so:
-
-.. code-block:: python
-
-   def meson_args(self):
-       return ['--warnlevel=3']
-
-
-This method can be used to pass flags as well as variables.
-
-Note that the ``MesonPackage`` base class already defines variants for
-``buildtype``, ``default_library`` and ``strip``, which are mapped to default
-Meson arguments, meaning that you don't have to specify these.
-
-^^^^^^^^^^^^^^^^^^^^^^
-External documentation
-^^^^^^^^^^^^^^^^^^^^^^
-
-For more information on the Meson build system, see:
-https://mesonbuild.com/index.html

lib/spack/docs/build_systems/multiplepackage.rst

@@ -1,350 +0,0 @@
-.. Copyright 2013-2021 Lawrence Livermore National Security, LLC and other
-   Spack Project Developers. See the top-level COPYRIGHT file for details.
-
-   SPDX-License-Identifier: (Apache-2.0 OR MIT)
-
-.. _multiplepackage:
-
-----------------------
-Multiple Build Systems
-----------------------
-
-Quite frequently, a package will change build systems from one version to the
-next. For example, a small project that once used a single Makefile to build
-may now require Autotools to handle the increased number of files that need to
-be compiled. Or, a package that once used Autotools may switch to CMake for
-Windows support. In this case, it becomes a bit more challenging to write a
-single build recipe for this package in Spack.
-
-There are several ways that this can be handled in Spack:
-
-#. Subclass the new build system, and override phases as needed (preferred)
-#. Subclass ``Package`` and implement ``install`` as needed
-#. Create separate ``*-cmake``, ``*-autotools``, etc. packages for each build system
-#. Rename the old package to ``*-legacy`` and create a new package
-#. Move the old package to a ``legacy`` repository and create a new package
-#. Drop older versions that only support the older build system
-
-Of these options, 1 is preferred, and will be demonstrated in this
-documentation. Options 3-5 have issues with concretization, so shouldn't be
-used. Options 4-5 also don't support more than two build systems. Option 6 only
-works if the old versions are no longer needed. Option 1 is preferred over 2
-because it makes it easier to drop the old build system entirely.
-
-The exact syntax of the package depends on which build systems you need to
-support. Below are a couple of common examples.
-
-^^^^^^^^^^^^^^^^^^^^^
-Makefile -> Autotools
-^^^^^^^^^^^^^^^^^^^^^
-
-Let's say we have the following package:
-
-.. code-block:: python
-
-   class Foo(MakefilePackage):
-       version("1.2.0", sha256="...")
-
-       def edit(self, spec, prefix):
-           filter_file("CC=", "CC=" + spack_cc, "Makefile")
-
-       def install(self, spec, prefix):
-           install_tree(".", prefix)
-
-
-The package subclasses from :ref:`makefilepackage`, which has three phases:
-
-#. ``edit`` (does nothing by default)
-#. ``build`` (runs ``make`` by default)
-#. ``install`` (runs ``make install`` by default)
-
-In this case, the ``install`` phase needed to be overridden because the
-Makefile did not have an install target. We also modify the Makefile to use
-Spack's compiler wrappers. The default ``build`` phase is not changed.
-
-Starting with version 1.3.0, we want to use Autotools to build instead.
-:ref:`autotoolspackage` has four phases:
-
-#. ``autoreconf`` (does not if a configure script already exists)
-#. ``configure`` (runs ``./configure --prefix=...`` by default)
-#. ``build`` (runs ``make`` by default)
-#. ``install`` (runs ``make install`` by default)
-
-If the only version we need to support is 1.3.0, the package would look as
-simple as:
-
-.. code-block:: python
-
-   class Foo(AutotoolsPackage):
-       version("1.3.0", sha256="...")
-
-       def configure_args(self):
-           return ["--enable-shared"]
-
-
-In this case, we use the default methods for each phase and only override
-``configure_args`` to specify additional flags to pass to ``./configure``.
-
-If we wanted to write a single package that supports both versions 1.2.0 and
-1.3.0, it would look something like:
-
-.. code-block:: python
-
-   class Foo(AutotoolsPackage):
-       version("1.3.0", sha256="...")
-       version("1.2.0", sha256="...", deprecated=True)
-
-       def configure_args(self):
-           return ["--enable-shared"]
-
-       # Remove the following once version 1.2.0 is dropped
-       @when("@:1.2")
-       def patch(self):
-           filter_file("CC=", "CC=" + spack_cc, "Makefile")
-
-       @when("@:1.2")
-       def autoreconf(self, spec, prefix):
-           pass
-
-       @when("@:1.2")
-       def configure(self, spec, prefix):
-           pass
-
-       @when("@:1.2")
-       def install(self, spec, prefix):
-           install_tree(".", prefix)
-
-
-There are a few interesting things to note here:
-
-* We added ``deprecated=True`` to version 1.2.0. This signifies that version
-  1.2.0 is deprecated and shouldn't be used. However, if a user still relies
-  on version 1.2.0, it's still there and builds just fine.
-* We moved the contents of the ``edit`` phase to the ``patch`` function. Since
-  ``AutotoolsPackage`` doesn't have an ``edit`` phase, the only way for this
-  step to be executed is to move it to the ``patch`` function, which always
-  gets run.
-* The ``autoreconf`` and ``configure`` phases become no-ops. Since the old
-  Makefile-based build system doesn't use these, we ignore these phases when
-  building ``foo@1.2.0``.
-* The ``@when`` decorator is used to override these phases only for older
-  versions. The default methods are used for ``foo@1.3:``.
-
-Once a new Spack release comes out, version 1.2.0 and everything below the
-comment can be safely deleted. The result is the same as if we had written a
-package for version 1.3.0 from scratch.
-
-^^^^^^^^^^^^^^^^^^
-Autotools -> CMake
-^^^^^^^^^^^^^^^^^^
-
-Let's say we have the following package:
-
-.. code-block:: python
-
-   class Bar(AutotoolsPackage):
-       version("1.2.0", sha256="...")
-
-       def configure_args(self):
-           return ["--enable-shared"]
-
-
-The package subclasses from :ref:`autotoolspackage`, which has four phases:
-
-#. ``autoreconf`` (does not if a configure script already exists)
-#. ``configure`` (runs ``./configure --prefix=...`` by default)
-#. ``build`` (runs ``make`` by default)
-#. ``install`` (runs ``make install`` by default)
-
-In this case, we use the default methods for each phase and only override
-``configure_args`` to specify additional flags to pass to ``./configure``.
-
-Starting with version 1.3.0, we want to use CMake to build instead.
-:ref:`cmakepackage` has three phases:
-
-#. ``cmake`` (runs ``cmake ...`` by default)
-#. ``build`` (runs ``make`` by default)
-#. ``install`` (runs ``make install`` by default)
-
-If the only version we need to support is 1.3.0, the package would look as
-simple as:
-
-.. code-block:: python
-
-   class Bar(CMakePackage):
-       version("1.3.0", sha256="...")
-
-       def cmake_args(self):
-           return [self.define("BUILD_SHARED_LIBS", True)]
-
-
-In this case, we use the default methods for each phase and only override
-``cmake_args`` to specify additional flags to pass to ``cmake``.
-
-If we wanted to write a single package that supports both versions 1.2.0 and
-1.3.0, it would look something like:
-
-.. code-block:: python
-
-   class Bar(CMakePackage):
-       version("1.3.0", sha256="...")
-       version("1.2.0", sha256="...", deprecated=True)
-
-       def cmake_args(self):
-           return [self.define("BUILD_SHARED_LIBS", True)]
-
-       # Remove the following once version 1.2.0 is dropped
-       def configure_args(self):
-           return ["--enable-shared"]
-
-       @when("@:1.2")
-       def cmake(self, spec, prefix):
-           configure("--prefix=" + prefix, *self.configure_args())
-
-
-There are a few interesting things to note here:
-
-* We added ``deprecated=True`` to version 1.2.0. This signifies that version
-  1.2.0 is deprecated and shouldn't be used. However, if a user still relies
-  on version 1.2.0, it's still there and builds just fine.
-* Since CMake and Autotools are so similar, we only need to override the
-  ``cmake`` phase, we can use the default ``build`` and ``install`` phases.
-* We override ``cmake`` to run ``./configure`` for older versions.
-  ``configure_args`` remains the same.
-* The ``@when`` decorator is used to override these phases only for older
-  versions. The default methods are used for ``bar@1.3:``.
-
-Once a new Spack release comes out, version 1.2.0 and everything below the
-comment can be safely deleted. The result is the same as if we had written a
-package for version 1.3.0 from scratch.
-
-^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
-Multiple build systems for the same version
-^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
-
-During the transition from one build system to another, developers often
-support multiple build systems at the same time. Spack can only use a single
-build system for a single version. To decide which build system to use for a
-particular version, take the following things into account:
-
-1. If the developers explicitly state that one build system is preferred over
-   another, use that one.
-2. If one build system is considered "experimental" while another is considered
-   "stable", use the stable build system.
-3. Otherwise, use the newer build system.
-
-The developer preference for which build system to use can change over time as
-a newer build system becomes stable/recommended.
-
-^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
-Dropping support for old build systems
-^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
-
-When older versions of a package don't support a newer build system, it can be
-tempting to simply delete them from a package. This significantly reduces
-package complexity and makes the build recipe much easier to maintain. However,
-other packages or Spack users may rely on these older versions. The recommended
-approach is to first support both build systems (as demonstrated above),
-:ref:`deprecate <deprecate>` versions that rely on the old build system, and
-remove those versions and any phases that needed to be overridden in the next
-Spack release.
-
-^^^^^^^^^^^^^^^^^^^^^^^^^^^
-Three or more build systems
-^^^^^^^^^^^^^^^^^^^^^^^^^^^
-
-In rare cases, a package may change build systems multiple times. For example,
-a package may start with Makefiles, then switch to Autotools, then switch to
-CMake. The same logic used above can be extended to any number of build systems.
-For example:
-
-.. code-block:: python
-
-   class Baz(CMakePackage):
-       version("1.4.0", sha256="...")  # CMake
-       version("1.3.0", sha256="...")  # Autotools
-       version("1.2.0", sha256="...")  # Makefile
-
-       def cmake_args(self):
-           return [self.define("BUILD_SHARED_LIBS", True)]
-
-       # Remove the following once version 1.3.0 is dropped
-       def configure_args(self):
-           return ["--enable-shared"]
-
-       @when("@1.3")
-       def cmake(self, spec, prefix):
-           configure("--prefix=" + prefix, *self.configure_args())
-
-       # Remove the following once version 1.2.0 is dropped
-       @when("@:1.2")
-       def patch(self):
-           filter_file("CC=", "CC=" + spack_cc, "Makefile")
-
-       @when("@:1.2")
-       def cmake(self, spec, prefix):
-           pass
-
-       @when("@:1.2")
-       def install(self, spec, prefix):
-           install_tree(".", prefix)
-
-
-^^^^^^^^^^^^^^^^^^^
-Additional examples
-^^^^^^^^^^^^^^^^^^^
-
-When writing new packages, it often helps to see examples of existing packages.
-Here is an incomplete list of existing Spack packages that have changed build
-systems before:
-
-================  =====================  ================
-Package           Previous Build System  New Build System
-================  =====================  ================
-amber             custom                 CMake
-arpack-ng         Autotools              CMake
-atk               Autotools              Meson
-blast             None                   Autotools
-dyninst           Autotools              CMake
-evtgen            Autotools              CMake
-fish              Autotools              CMake
-gdk-pixbuf        Autotools              Meson
-glib              Autotools              Meson
-glog              Autotools              CMake
-gmt               Autotools              CMake
-gtkplus           Autotools              Meson
-hpl               Makefile               Autotools
-interproscan      Perl                   Maven
-jasper            Autotools              CMake
-kahip             SCons                  CMake
-kokkos            Makefile               CMake
-kokkos-kernels    Makefile               CMake
-leveldb           Makefile               CMake
-libdrm            Autotools              Meson
-libjpeg-turbo     Autotools              CMake
-mesa              Autotools              Meson
-metis             None                   CMake
-mpifileutils      Autotools              CMake
-muparser          Autotools              CMake
-mxnet             Makefile               CMake
-nest              Autotools              CMake
-neuron            Autotools              CMake
-nsimd             CMake                  nsconfig
-opennurbs         Makefile               CMake
-optional-lite     None                   CMake
-plasma            Makefile               CMake
-preseq            Makefile               Autotools
-protobuf          Autotools              CMake
-py-pygobject      Autotools              Python
-singularity       Autotools              Makefile
-span-lite         None                   CMake
-ssht              Makefile               CMake
-string-view-lite  None                   CMake
-superlu           Makefile               CMake
-superlu-dist      Makefile               CMake
-uncrustify        Autotools              CMake
-================  =====================  ================
-
-Packages that support multiple build systems can be a bit confusing to write.
-Don't hesitate to open an issue or draft pull request and ask for advice from
-other Spack developers!

lib/spack/docs/build_systems/octavepackage.rst

@@ -1,52 +0,0 @@
-.. Copyright 2013-2021 Lawrence Livermore National Security, LLC and other
-   Spack Project Developers. See the top-level COPYRIGHT file for details.
-
-   SPDX-License-Identifier: (Apache-2.0 OR MIT)
-
-.. _octavepackage:
-
--------------
-OctavePackage
--------------
-
-Octave has its own build system for installing packages.
-
-^^^^^^
-Phases
-^^^^^^
-
-The ``OctavePackage`` base class has a single phase:
-
-#. ``install`` - install the package
-
-By default, this phase runs the following command:
-
-.. code-block:: console
-
-   $ octave '--eval' 'pkg prefix <prefix>; pkg install <archive_file>'
-
-
-Beware that uninstallation is not implemented at the moment. After uninstalling
-a package via Spack, you also need to manually uninstall it from Octave via
-``pkg uninstall <package_name>``.
-
-^^^^^^^^^^^^^^^^^^^^^^^
-Finding Octave packages
-^^^^^^^^^^^^^^^^^^^^^^^
-
-Most Octave packages are listed at https://octave.sourceforge.io/packages.php.
-
-^^^^^^^^^^^^
-Dependencies
-^^^^^^^^^^^^
-
-Usually, the homepage of a package will list dependencies, i.e.
-``Dependencies:	Octave >= 3.6.0 struct >= 1.0.12``. The same information should
-be available in the ``DESCRIPTION`` file in the root of each archive.
-
-^^^^^^^^^^^^^^^^^^^^^^
-External Documentation
-^^^^^^^^^^^^^^^^^^^^^^
-
-For more information on the Octave build system, see:
-https://octave.org/doc/v4.4.0/Installing-and-Removing-Packages.html

lib/spack/docs/build_systems/perlpackage.rst

@@ -1,210 +0,0 @@
-.. Copyright 2013-2021 Lawrence Livermore National Security, LLC and other
-   Spack Project Developers. See the top-level COPYRIGHT file for details.
-
-   SPDX-License-Identifier: (Apache-2.0 OR MIT)
-
-.. _perlpackage:
-
------------
-PerlPackage
------------
-
-Much like Octave, Perl has its own language-specific
-build system.
-
-^^^^^^
-Phases
-^^^^^^
-
-The ``PerlPackage`` base class comes with 3 phases that can be overridden:
-
-#. ``configure`` - configure the package
-#. ``build`` - build the package
-#. ``install`` - install the package
-
-Perl packages have 2 common modules used for module installation:
-
-"""""""""""""""""""""""
-``ExtUtils::MakeMaker``
-"""""""""""""""""""""""
-
-The ``ExtUtils::MakeMaker`` module is just what it sounds like, a module
-designed to generate Makefiles. It can be identified by the presence of
-a ``Makefile.PL`` file, and has the following installation steps:
-
-.. code-block:: console
-
-   $ perl Makefile.PL INSTALL_BASE=/path/to/installation/prefix
-   $ make
-   $ make test  # optional
-   $ make install
-
-
-"""""""""""""""""
-``Module::Build``
-"""""""""""""""""
-
-The ``Module::Build`` module is a pure-Perl build system, and can be
-identified by the presence of a ``Build.PL`` file. It has the following
-installation steps:
-
-.. code-block:: console
-
-   $ perl Build.PL --install_base /path/to/installation/prefix
-   $ ./Build
-   $ ./Build test  # optional
-   $ ./Build install
-
-
-If both ``Makefile.PL`` and ``Build.PL`` files exist in the package,
-Spack will use ``Makefile.PL`` by default. If your package uses a
-different module, ``PerlPackage`` will need to be extended to support
-it.
-
-``PerlPackage`` automatically detects which build steps to use, so there
-shouldn't be much work on the package developer's side to get things
-working.
-
-^^^^^^^^^^^^^^^^^^^^^
-Finding Perl packages
-^^^^^^^^^^^^^^^^^^^^^
-
-Most Perl modules are hosted on CPAN - The Comprehensive Perl Archive
-Network. If you need to find a package for ``XML::Parser``, for example,
-you should search for "CPAN XML::Parser".
-
-Some CPAN pages are versioned. Check for a link to the
-"Latest Release" to make sure you have the latest version.
-
-^^^^^^^^^^^^
-Package name
-^^^^^^^^^^^^
-
-When you use ``spack create`` to create a new Perl package, Spack will
-automatically prepend ``perl-`` to the front of the package name. This
-helps to keep Perl modules separate from other packages. The same
-naming scheme is used for other language extensions, like Python and R.
-
-^^^^^^^^^^^
-Description
-^^^^^^^^^^^
-
-Most CPAN pages have a short description under "NAME" and a longer
-description under "DESCRIPTION". Use whichever you think is more
-useful while still being succinct.
-
-^^^^^^^^
-Homepage
-^^^^^^^^
-
-In the top-right corner of the CPAN page, you'll find a "permalink"
-for the package. This should be used instead of the current URL, as
-it doesn't contain the version number and will always link to the
-latest release.
-
-^^^
-URL
-^^^
-
-If you haven't found it already, the download URL is on the right
-side of the page below the permalink. Search for "Download".
-
-^^^^^^^^^^^^^^^^^^^^^^^^^
-Build system dependencies
-^^^^^^^^^^^^^^^^^^^^^^^^^
-
-Every ``PerlPackage`` obviously depends on Perl at build and run-time,
-so ``PerlPackage`` contains:
-
-.. code-block:: python
-
-   extends('perl')
-
-
-If your package requires a specific version of Perl, you should
-specify this.
-
-Although newer versions of Perl include ``ExtUtils::MakeMaker`` and
-``Module::Build`` as "core" modules, you may want to add dependencies
-on ``perl-extutils-makemaker`` and ``perl-module-build`` anyway. Many
-people add Perl as an external package, and we want the build to work
-properly. If your package uses ``Makefile.PL`` to build, add:
-
-.. code-block:: python
-
-   depends_on('perl-extutils-makemaker', type='build')
-
-
-If your package uses ``Build.PL`` to build, add:
-
-.. code-block:: python
-
-   depends_on('perl-module-build', type='build')
-
-
-^^^^^^^^^^^^^^^^^
-Perl dependencies
-^^^^^^^^^^^^^^^^^
-
-Below the download URL, you will find a "Dependencies" link, which
-takes you to a page listing all of the dependencies of the package.
-Packages listed as "Core module" don't need to be added as dependencies,
-but all direct dependencies should be added. Don't add dependencies of
-dependencies. These should be added as dependencies to the dependency,
-not to your package.
-
-^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
-Passing arguments to configure
-^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
-
-Packages that have non-Perl dependencies often use command-line
-variables to specify their installation directory. You can pass
-arguments to ``Makefile.PL`` or ``Build.PL`` by overriding
-``configure_args`` like so:
-
-.. code-block:: python
-
-   def configure_args(self):
-       expat = self.spec['expat'].prefix
-
-       return [
-           'EXPATLIBPATH={0}'.format(expat.lib),
-           'EXPATINCPATH={0}'.format(expat.include),
-       ]
-
-
-^^^^^^^^^^^^^^^^^^^^^
-Alternatives to Spack
-^^^^^^^^^^^^^^^^^^^^^
-
-If you need to maintain a stack of Perl modules for a user and don't
-want to add all of them to Spack, a good alternative is ``cpanm``.
-If Perl is already installed on your system, it should come with a
-``cpan`` executable. To install ``cpanm``, run the following command:
-
-.. code-block:: console
-
-   $ cpan App::cpanminus
-
-
-Now, you can install any Perl module you want by running:
-
-.. code-block:: console
-
-   $ cpanm Module::Name
-
-
-Obviously, these commands can only be run if you have root privileges.
-Furthermore, ``cpanm`` is not capable of installing non-Perl dependencies.
-If you need to install to your home directory or need to install a module
-with non-Perl dependencies, Spack is a better option.
-
-^^^^^^^^^^^^^^^^^^^^^^
-External documentation
-^^^^^^^^^^^^^^^^^^^^^^
-
-You can find more information on installing Perl modules from source
-at: http://www.perlmonks.org/?node_id=128077
-
-More generic Perl module installation instructions can be found at:
-http://www.cpan.org/modules/INSTALL.html

lib/spack/docs/build_systems/pythonpackage.rst

@@ -1,889 +0,0 @@
-.. Copyright 2013-2021 Lawrence Livermore National Security, LLC and other
-   Spack Project Developers. See the top-level COPYRIGHT file for details.
-
-   SPDX-License-Identifier: (Apache-2.0 OR MIT)
-
-.. _pythonpackage:
-
--------------
-PythonPackage
--------------
-
-Python packages and modules have their own special build system.
-
-^^^^^^
-Phases
-^^^^^^
-
-The ``PythonPackage`` base class provides the following phases that
-can be overridden:
-
-* ``build``
-* ``build_py``
-* ``build_ext``
-* ``build_clib``
-* ``build_scripts``
-* ``install``
-* ``install_lib``
-* ``install_headers``
-* ``install_scripts``
-* ``install_data``
-
-These are all standard ``setup.py`` commands and can be found by running:
-
-.. code-block:: console
-
-   $ python setup.py --help-commands
-
-
-By default, only the ``build`` and ``install`` phases are run:
-
-#. ``build`` - build everything needed to install
-#. ``install`` - install everything from build directory
-
-If for whatever reason you need to run more phases, simply modify your
-``phases`` list like so:
-
-.. code-block:: python
-
-   phases = ['build_ext', 'install']
-
-
-Each phase provides a function ``<phase>`` that runs:
-
-.. code-block:: console
-
-   $ python -s setup.py --no-user-cfg <phase>
-
-
-Each phase also has a ``<phase_args>`` function that can pass arguments to
-this call. All of these functions are empty except for the ``install_args``
-function, which passes ``--prefix=/path/to/installation/prefix``. There is
-also some additional logic specific to setuptools and eggs.
-
-If you need to run a phase that is not a standard ``setup.py`` command,
-you'll need to define a function for it like so:
-
-.. code-block:: python
-
-   phases = ['configure', 'build', 'install']
-
-   def configure(self, spec, prefix):
-       self.setup_py('configure')
-
-
-^^^^^^
-Wheels
-^^^^^^
-
-Some Python packages are closed-source and distributed as wheels.
-Instead of using the ``PythonPackage`` base class, you should extend
-the ``Package`` base class and implement the following custom installation
-procedure:
-
-.. code-block:: python
-
-   def install(self, spec, prefix):
-       pip = which('pip')
-       pip('install', self.stage.archive_file, '--prefix={0}'.format(prefix))
-
-
-This will require a dependency on pip, as mentioned below.
-
-^^^^^^^^^^^^^^^
-Important files
-^^^^^^^^^^^^^^^
-
-Python packages can be identified by the presence of a ``setup.py`` file.
-This file is used by package managers like ``pip`` to determine a
-package's dependencies and the version of dependencies required, so if
-the ``setup.py`` file is not accurate, the package will not build properly.
-For this reason, the ``setup.py`` file should be fairly reliable. If the
-documentation and ``setup.py`` disagree on something, the ``setup.py``
-file should be considered to be the truth. As dependencies are added or
-removed, the documentation is much more likely to become outdated than
-the ``setup.py``.
-
-The Python ecosystem has evolved significantly over the years. Before
-setuptools became popular, most packages listed their dependencies in a
-``requirements.txt`` file. Once setuptools took over, these dependencies
-were listed directly in the ``setup.py``. Newer PEPs introduced additional
-files, like ``setup.cfg`` and ``pyproject.toml``. You should look out for
-all of these files, as they may all contain important information about
-package dependencies.
-
-Some Python packages are closed-source and are distributed as Python
-wheels. For example, ``py-azureml-sdk`` downloads a ``.whl`` file. This
-file is simply a zip file, and can be extracted using:
-
-.. code-block:: console
-
-   $ unzip *.whl
-
-
-The zip file will not contain a ``setup.py``, but it will contain a
-``METADATA`` file which contains all the information you need to
-write a ``package.py`` build recipe.
-
-^^^^
-PyPI
-^^^^
-
-The vast majority of Python packages are hosted on PyPI - The Python
-Package Index. ``pip`` only supports packages hosted on PyPI, making
-it the only option for developers who want a simple installation.
-Search for "PyPI <package-name>" to find the download page. Note that
-some pages are versioned, and the first result may not be the newest
-version. Click on the "Latest Version" button to the top right to see
-if a newer version is available. The download page is usually at::
-
-   https://pypi.org/project/<package-name>
-
-
-Since PyPI is so common, the ``PythonPackage`` base class has a
-``pypi`` attribute that can be set. Once set, ``pypi`` will be used
-to define the ``homepage``, ``url``, and ``list_url``. For example,
-the following:
-
-.. code-block:: python
-
-   homepage = 'https://pypi.org/project/setuptools/'
-   url      = 'https://pypi.org/packages/source/s/setuptools/setuptools-49.2.0.zip'
-   list_url = 'https://pypi.org/simple/setuptools/'
-
-
-is equivalent to:
-
-.. code-block:: python
-
-   pypi = 'setuptools/setuptools-49.2.0.zip'
-
-
-^^^^^^^^^^^
-Description
-^^^^^^^^^^^
-
-The top of the PyPI downloads page contains a description of the
-package. The first line is usually a short description, while there
-may be a several line "Project Description" that follows. Choose whichever
-is more useful. You can also get these descriptions on the command-line
-using:
-
-.. code-block:: console
-
-   $ python setup.py --description
-   $ python setup.py --long-description
-
-
-^^^^^^^^
-Homepage
-^^^^^^^^
-
-Package developers use ``setup.py`` to upload new versions to PyPI.
-The ``setup`` method often passes metadata like ``homepage`` to PyPI.
-This metadata is displayed on the left side of the download page.
-Search for the text "Homepage" under "Project links" to find it. You
-should use this page instead of the PyPI page if they differ. You can
-also get the homepage on the command-line by running:
-
-.. code-block:: console
-
-   $ python setup.py --url
-
-
-^^^
-URL
-^^^
-
-If ``pypi`` is set as mentioned above, ``url`` and ``list_url`` will
-be automatically set for you. If both ``.tar.gz`` and ``.zip`` versions
-are available, ``.tar.gz`` is preferred. If some releases offer both
-``.tar.gz`` and ``.zip`` versions, but some only offer ``.zip`` versions,
-use ``.zip``.
-
-Some Python packages are closed-source and do not ship ``.tar.gz`` or ``.zip``
-files on either PyPI or GitHub. If this is the case, you can still download
-and install a Python wheel. For example, ``py-azureml-sdk`` is closed source
-and can be downloaded from::
-
-   https://pypi.io/packages/py3/a/azureml_sdk/azureml_sdk-1.11.0-py3-none-any.whl
-
-
-You may see Python-specific or OS-specific URLs. Note that when you add a
-``.whl`` URL, you should add ``expand=False`` to ensure that Spack doesn't
-try to extract the wheel:
-
-.. code-block:: python
-
-   version('1.11.0', sha256='d8c9d24ea90457214d798b0d922489863dad518adde3638e08ef62de28fb183a', expand=False)
-
-
-"""""""""""""""
-PyPI vs. GitHub
-"""""""""""""""
-
-Many packages are hosted on PyPI, but are developed on GitHub or another
-version control systems. The tarball can be downloaded from either
-location, but PyPI is preferred for the following reasons:
-
-#. PyPI contains the bare minimum number of files needed to install the package.
-
-   You may notice that the tarball you download from PyPI does not
-   have the same checksum as the tarball you download from GitHub.
-   When a developer uploads a new release to PyPI, it doesn't contain
-   every file in the repository, only the files necessary to install
-   the package. PyPI tarballs are therefore smaller.
-
-#. PyPI is the official source for package managers like ``pip``.
-
-   Let's be honest, ``pip`` is much more popular than Spack. If the
-   GitHub tarball contains a file not present in the PyPI tarball that
-   causes a bug, the developers may not realize this for quite some
-   time. If the bug was in a file contained in the PyPI tarball, users
-   would notice the bug much more quickly.
-
-#. GitHub release may be a beta version.
-
-   When a developer releases a new version of a package on GitHub,
-   it may not be intended for most users. Until that release also
-   makes its way to PyPI, it should be assumed that the release is
-   not yet ready for general use.
-
-#. The checksum for a GitHub release may change.
-
-   Unfortunately, some developers have a habit of patching releases
-   without incrementing the version number. This results in a change
-   in tarball checksum. Package managers like Spack that use checksums
-   to verify the integrity of a download tarball grind to a halt when
-   the checksum for a known version changes. Most of the time, the
-   change is intentional, and contains a needed bug fix. However,
-   sometimes the change indicates a download source that has been
-   compromised, and a tarball that contains a virus. If this happens,
-   you must contact the developers to determine which is the case.
-   PyPI is nice because it makes it physically impossible to
-   re-release the same version of a package with a different checksum.
-
-^^^^^^^^^^^^^^^^^^^^^^^^^
-Build system dependencies
-^^^^^^^^^^^^^^^^^^^^^^^^^
-
-There are a few dependencies common to the ``PythonPackage`` build system.
-
-""""""
-Python
-""""""
-
-Obviously, every ``PythonPackage`` needs Python at build-time to run
-``python setup.py build && python setup.py install``. Python is also
-needed at run-time if you want to import the module. Due to backwards
-incompatible changes between Python 2 and 3, it is very important to
-specify which versions of Python are supported. If the documentation
-mentions that Python 3 is required, this can be specified as:
-
-.. code-block:: python
-
-   depends_on('python@3:', type=('build', 'run'))
-
-
-If Python 2 is required, this would look like:
-
-.. code-block:: python
-
-   depends_on('python@:2', type=('build', 'run'))
-
-
-If Python 2.7 is the only version that works, you can use:
-
-.. code-block:: python
-
-   depends_on('python@2.7:2.8', type=('build', 'run'))
-
-
-The documentation may not always specify supported Python versions.
-Another place to check is in the ``setup.py`` or ``setup.cfg`` file.
-Look for a line containing ``python_requires``. An example from
-`py-numpy <https://github.com/spack/spack/blob/develop/var/spack/repos/builtin/packages/py-numpy/package.py>`_
-looks like:
-
-.. code-block:: python
-
-   python_requires='>=2.7,!=3.0.*,!=3.1.*,!=3.2.*,!=3.3.*'
-
-
-You may also find a version check at the top of the ``setup.py``:
-
-.. code-block:: python
-
-   if sys.version_info[:2] < (2, 7) or (3, 0) <= sys.version_info[:2] < (3, 4):
-       raise RuntimeError("Python version 2.7 or >= 3.4 required.")
-
-
-This can be converted to Spack's spec notation like so:
-
-.. code-block:: python
-
-   depends_on('python@2.7:2.8,3.4:', type=('build', 'run'))
-
-
-If you are writing a recipe for a package that only distributes
-wheels, look for a section in the ``METADATA`` file that looks like::
-
-   Requires-Python: >=3.5,<4
-
-
-This would be translated to:
-
-.. code-block:: python
-
-   extends('python')
-   depends_on('python@3.5:3', type=('build', 'run'))
-
-
-Many ``setup.py`` or ``setup.cfg`` files also contain information like::
-
-   Programming Language :: Python :: 2
-   Programming Language :: Python :: 2.6
-   Programming Language :: Python :: 2.7
-   Programming Language :: Python :: 3
-   Programming Language :: Python :: 3.3
-   Programming Language :: Python :: 3.4
-   Programming Language :: Python :: 3.5
-   Programming Language :: Python :: 3.6
-
-
-This is a list of versions of Python that the developer likely tests.
-However, you should not use this to restrict the versions of Python
-the package uses unless one of the two former methods (``python_requires``
-or ``sys.version_info``) is used. There is no logic in setuptools
-that prevents the package from building for Python versions not in
-this list, and often new releases like Python 3.7 or 3.8 work just fine.
-
-""""""""""
-setuptools
-""""""""""
-
-Originally, the Python language had a single build system called
-distutils, which is built into Python. Distutils provided a common
-framework for package authors to describe their project and how it
-should be built. However, distutils was not without limitations.
-Most notably, there was no way to list a project's dependencies
-with distutils. Along came setuptools, a non-builtin build system
-designed to overcome the limitations of distutils. Both projects
-use a similar API, making the transition easy while adding much
-needed functionality. Today, setuptools is used in around 90% of
-the Python packages in Spack.
-
-Since setuptools isn't built-in to Python, you need to add it as a
-dependency. To determine whether or not a package uses setuptools,
-search the file for an import statement like:
-
-.. code-block:: python
-
-   import setuptools
-
-
-or:
-
-.. code-block:: python
-
-   from setuptools import setup
-
-
-Some packages are designed to work with both setuptools and distutils,
-so you may find something like:
-
-.. code-block:: python
-
-   try:
-       from setuptools import setup
-   except ImportError:
-       from distutils.core import setup
-
-
-This uses setuptools if available, and falls back to distutils if not.
-In this case, you would still want to add a setuptools dependency, as
-it offers us more control over the installation.
-
-Unless specified otherwise, setuptools is usually a build-only dependency.
-That is, it is needed to install the software, but is not needed at
-run-time. This can be specified as:
-
-.. code-block:: python
-
-   depends_on('py-setuptools', type='build')
-
-
-"""
-pip
-"""
-
-Packages distributed as Python wheels will require an extra dependency
-on pip:
-
-.. code-block:: python
-
-   depends_on('py-pip', type='build')
-
-
-We will use pip to install the actual wheel.
-
-""""""
-cython
-""""""
-
-Compared to compiled languages, interpreted languages like Python can
-be quite a bit slower. To work around this, some Python developers
-rewrite computationally demanding sections of code in C, a process
-referred to as "cythonizing". In order to build these package, you
-need to add a build dependency on cython:
-
-.. code-block:: python
-
-   depends_on('py-cython', type='build')
-
-
-Look for references to "cython" in the ``setup.py`` to determine
-whether or not this is necessary. Cython may be optional, but
-even then you should list it as a required dependency. Spack is
-designed to compile software, and is meant for HPC facilities
-where speed is crucial. There is no reason why someone would not
-want an optimized version of a library instead of the pure-Python
-version.
-
-Note that some release tarballs come pre-cythonized, and cython is
-not needed as a dependency. However, this is becoming less common
-as Python continues to evolve and developers discover that cythonized
-sources are no longer compatible with newer versions of Python and
-need to be re-cythonized.
-
-^^^^^^^^^^^^^^^^^^^
-Python dependencies
-^^^^^^^^^^^^^^^^^^^
-
-When you install a package with ``pip``, it reads the ``setup.py``
-file in order to determine the dependencies of the package.
-If the dependencies are not yet installed, ``pip`` downloads them
-and installs them for you. This may sound convenient, but Spack
-cannot rely on this behavior for two reasons:
-
-#. Spack needs to be able to install packages on air-gapped networks.
-
-   If there is no internet connection, ``pip`` can't download the
-   package dependencies. By explicitly listing every dependency in
-   the ``package.py``, Spack knows what to download ahead of time.
-
-#. Duplicate installations of the same dependency may occur.
-
-   Spack supports *activation* of Python extensions, which involves
-   symlinking the package installation prefix to the Python installation
-   prefix. If your package is missing a dependency, that dependency
-   will be installed to the installation directory of the same package.
-   If you try to activate the package + dependency, it may cause a
-   problem if that package has already been activated.
-
-For these reasons, you must always explicitly list all dependencies.
-Although the documentation may list the package's dependencies,
-often the developers assume people will use ``pip`` and won't have to
-worry about it. Always check the ``setup.py`` to find the true
-dependencies.
-
-If the package relies on ``distutils``, it may not explicitly list its
-dependencies. Check for statements like:
-
-.. code-block:: python
-
-   try:
-       import numpy
-   except ImportError:
-       raise ImportError("numpy must be installed prior to installation")
-
-
-Obviously, this means that ``py-numpy`` is a dependency.
-
-If the package uses ``setuptools``, check for the following clues:
-
-* ``python_requires``
-
-  As mentioned above, this specifies which versions of Python are
-  required.
-
-* ``setup_requires``
-
-  These packages are usually only needed at build-time, so you can
-  add them with ``type='build'``.
-
-* ``install_requires``
-
-  These packages are required for building and installation. You can
-  add them with ``type=('build', 'run')``.
-
-* ``extra_requires``
-
-  These packages are optional dependencies that enable additional
-  functionality. You should add a variant that optionally adds these
-  dependencies. This variant should be False by default.
-
-* ``test_requires``
-
-  These are packages that are required to run the unit tests for the
-  package. These dependencies can be specified using the
-  ``type='test'`` dependency type. However, the PyPI tarballs rarely
-  contain unit tests, so there is usually no reason to add these.
-
-In the root directory of the package, you may notice a
-``requirements.txt`` file. It may look like this file contains a list
-of all of the package's dependencies. Don't be fooled. This file is
-used by tools like Travis to install the pre-requisites for the
-package... and a whole bunch of other things. It often contains
-dependencies only needed for unit tests, like:
-
-* mock
-* nose
-* pytest
-
-It can also contain dependencies for building the documentation, like
-sphinx. If you can't find any information about the package's
-dependencies, you can take a look in ``requirements.txt``, but be sure
-not to add test or documentation dependencies.
-
-Newer PEPs have added alternative ways to specify a package's dependencies.
-If you don't see any dependencies listed in the ``setup.py``, look for a
-``setup.cfg`` or ``pyproject.toml``. These files can be used to store the
-same ``install_requires`` information that ``setup.py`` used to use.
-
-If you are write a recipe for a package that only distributes wheels,
-check the ``METADATA`` file for lines like::
-
-   Requires-Dist: azureml-core (~=1.11.0)
-   Requires-Dist: azureml-dataset-runtime[fuse] (~=1.11.0)
-   Requires-Dist: azureml-train (~=1.11.0)
-   Requires-Dist: azureml-train-automl-client (~=1.11.0)
-   Requires-Dist: azureml-pipeline (~=1.11.0)
-   Provides-Extra: accel-models
-   Requires-Dist: azureml-accel-models (~=1.11.0); extra == 'accel-models'
-   Provides-Extra: automl
-   Requires-Dist: azureml-train-automl (~=1.11.0); extra == 'automl'
-
-
-Lines that use ``Requires-Dist`` are similar to ``install_requires``.
-Lines that use ``Provides-Extra`` are similar to ``extra_requires``,
-and you can add a variant for those dependencies. The ``~=1.11.0``
-syntax is equivalent to ``1.11.0:1.11``.
-
-""""""""""
-setuptools
-""""""""""
-
-Setuptools is a bit of a special case. If a package requires setuptools
-at run-time, how do they express this? They could add it to
-``install_requires``, but setuptools is imported long before this and is
-needed to read this line. And since you can't install the package
-without setuptools, the developers assume that setuptools will already
-be there, so they never mention when it is required. We don't want to
-add run-time dependencies if they aren't needed, so you need to
-determine whether or not setuptools is needed. Grep the installation
-directory for any files containing a reference to ``setuptools`` or
-``pkg_resources``. Both modules come from ``py-setuptools``.
-``pkg_resources`` is particularly common in scripts found in
-``prefix/bin``.
-
-^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
-Passing arguments to setup.py
-^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
-
-The default build and install phases should be sufficient to install
-most packages. However, you may want to pass additional flags to
-either phase.
-
-You can view the available options for a particular phase with:
-
-.. code-block:: console
-
-   $ python setup.py <phase> --help
-
-
-Each phase provides a ``<phase_args>`` function that can be used to
-pass arguments to that phase. For example,
-`py-numpy <https://github.com/spack/spack/blob/develop/var/spack/repos/builtin/packages/py-numpy/package.py>`_
-adds:
-
-.. code-block:: python
-
-   def build_args(self, spec, prefix):
-       args = []
-
-       # From NumPy 1.10.0 on it's possible to do a parallel build.
-       if self.version >= Version('1.10.0'):
-           # But Parallel build in Python 3.5+ is broken.  See:
-           # https://github.com/spack/spack/issues/7927
-           # https://github.com/scipy/scipy/issues/7112
-           if spec['python'].version < Version('3.5'):
-               args = ['-j', str(make_jobs)]
-
-       return args
-
-
-^^^^^^^
-Testing
-^^^^^^^
-
-``PythonPackage`` provides a couple of options for testing packages
-both during and after the installation process.
-
-""""""""""""
-Import tests
-""""""""""""
-
-Just because a package successfully built does not mean that it built
-correctly. The most reliable test of whether or not the package was
-correctly installed is to attempt to import all of the modules that
-get installed. To get a list of modules, run the following command
-in the source directory:
-
-.. code-block:: console
-
-   $ python
-   >>> import setuptools
-   >>> setuptools.find_packages()
-   ['numpy', 'numpy._build_utils', 'numpy.compat', 'numpy.core', 'numpy.distutils', 'numpy.doc', 'numpy.f2py', 'numpy.fft', 'numpy.lib', 'numpy.linalg', 'numpy.ma', 'numpy.matrixlib', 'numpy.polynomial', 'numpy.random', 'numpy.testing', 'numpy.core.code_generators', 'numpy.distutils.command', 'numpy.distutils.fcompiler']
-
-
-Large, complex packages like ``numpy`` will return a long list of
-packages, while other packages like ``six`` will return an empty list.
-``py-six`` installs a single ``six.py`` file. In Python packaging lingo,
-a "package" is a directory containing files like:
-
-.. code-block:: none
-
-   foo/__init__.py
-   foo/bar.py
-   foo/baz.py
-
-
-whereas a "module" is a single Python file.
-
-The ``PythonPackage`` base class automatically detects these module
-names for you. If, for whatever reason, the module names detected
-are wrong, you can provide the names yourself by overriding
-``import_modules`` like so:
-
-.. code-block:: python
-
-   import_modules = ['six']
-
-
-Sometimes the list of module names to import depends on how the
-package was built. For example, the ``py-pyyaml`` package has a
-``+libyaml`` variant that enables the build of a faster optimized
-version of the library. If the user chooses ``~libyaml``, only the
-``yaml`` library will be importable. If the user chooses ``+libyaml``,
-both the ``yaml`` and ``yaml.cyaml`` libraries will be available.
-This can be expressed like so:
-
-.. code-block:: python
-
-   @property
-   def import_modules(self):
-       modules = ['yaml']
-
-       if '+libyaml' in self.spec:
-           modules.append('yaml.cyaml')
-
-       return modules
-
-
-These tests often catch missing dependencies and non-RPATHed
-libraries. Make sure not to add modules/packages containing the word
-"test", as these likely won't end up in the installation directory,
-or may require test dependencies like pytest to be installed.
-
-Import tests can be run during the installation using ``spack install
---test=root`` or at any time after the installation using
-``spack test run``.
-
-""""""""""
-Unit tests
-""""""""""
-
-The package may have its own unit or regression tests. Spack can
-run these tests during the installation by adding phase-appropriate
-test methods.
-
-For example, ``py-numpy`` adds the following as a check to run 
-after the ``install`` phase:
-
-.. code-block:: python
-
-   @run_after('install')
-   @on_package_attributes(run_tests=True)
-   def install_test(self):
-       with working_dir('spack-test', create=True):
-           python('-c', 'import numpy; numpy.test("full", verbose=2)')
-
-
-when testing is enabled during the installation (i.e., ``spack install
---test=root``).
-
-.. note::
-
-   Additional information is available on :ref:`install phase tests
-   <install_phase-tests>`.
-
-^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
-Setup file in a sub-directory
-^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
-
-In order to be compatible with package managers like ``pip``, the package
-is required to place its ``setup.py`` in the root of the tarball. However,
-not every Python package cares about ``pip`` or PyPI. If you are installing
-a package that is not hosted on PyPI, you may find that it places its
-``setup.py`` in a sub-directory. To handle this, add the directory containing
-``setup.py`` to the package like so:
-
-.. code-block:: python
-
-   build_directory = 'source'
-
-
-^^^^^^^^^^^^^^^^^^^^^^^^^^^^
-Alternate names for setup.py
-^^^^^^^^^^^^^^^^^^^^^^^^^^^^
-
-As previously mentioned, packages need to call their setup script ``setup.py``
-in order to be compatible with package managers like ``pip``. However, some
-packages like
-`py-meep <https://github.com/spack/spack/blob/develop/var/spack/repos/builtin/packages/py-meep/package.py>`_  and
-`py-adios <https://github.com/spack/spack/blob/develop/var/spack/repos/builtin/packages/py-adios/package.py>`_
-come with multiple setup scripts, one for a serial build and another for a
-parallel build. You can override the default name to use like so:
-
-.. code-block:: python
-
-   def setup_file(self):
-       return 'setup-mpi.py' if '+mpi' in self.spec else 'setup.py'
-
-
-^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
-PythonPackage vs. packages that use Python
-^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
-
-There are many packages that make use of Python, but packages that depend
-on Python are not necessarily ``PythonPackage``'s.
-
-"""""""""""""""""""""""
-Choosing a build system
-"""""""""""""""""""""""
-
-First of all, you need to select a build system. ``spack create`` usually
-does this for you, but if for whatever reason you need to do this manually,
-choose ``PythonPackage`` if and only if the package contains a ``setup.py``
-file.
-
-"""""""""""""""""""""""
-Choosing a package name
-"""""""""""""""""""""""
-
-Selecting the appropriate package name is a little more complicated
-than choosing the build system. By default, ``spack create`` will
-prepend ``py-`` to the beginning of the package name if it detects
-that the package uses the ``PythonPackage`` build system. However, there
-are occasionally packages that use ``PythonPackage`` that shouldn't
-start with ``py-``. For example:
-
-* awscli
-* aws-parallelcluster
-* busco
-* easybuild
-* httpie
-* mercurial
-* scons
-* snakemake
-
-The thing these packages have in common is that they are command-line
-tools that just so happen to be written in Python. Someone who wants
-to install ``mercurial`` with Spack isn't going to realize that it is
-written in Python, and they certainly aren't going to assume the package
-is called ``py-mercurial``. For this reason, we manually renamed the
-package to ``mercurial``.
-
-Likewise, there are occasionally packages that don't use the
-``PythonPackage`` build system but should still be prepended with ``py-``.
-For example:
-
-* py-genders
-* py-py2cairo
-* py-pygobject
-* py-pygtk
-* py-pyqt
-* py-pyserial
-* py-sip
-* py-xpyb
-
-These packages are primarily used as Python libraries, not as
-command-line tools. You may see C/C++ packages that have optional
-Python language-bindings, such as:
-
-* antlr
-* cantera
-* conduit
-* pagmo
-* vtk
-
-Don't prepend these kind of packages with ``py-``. When in doubt,
-think about how this package will be used. Is it primarily a Python
-library that will be imported in other Python scripts? Or is it a
-command-line tool, or C/C++/Fortran program with optional Python
-modules? The former should be prepended with ``py-``, while the
-latter should not.
-
-""""""""""""""""""""""
-extends vs. depends_on
-""""""""""""""""""""""
-
-This is very similar to the naming dilemma above, with a slight twist.
-As mentioned in the :ref:`Packaging Guide <packaging_extensions>`,
-``extends`` and ``depends_on`` are very similar, but ``extends`` adds
-the ability to *activate* the package. Activation involves symlinking
-everything in the installation prefix of the package to the installation
-prefix of Python. This allows the user to import a Python module without
-having to add that module to ``PYTHONPATH``.
-
-When deciding between ``extends`` and ``depends_on``, the best rule of
-thumb is to check the installation prefix. If Python libraries are
-installed to ``prefix/lib/python2.7/site-packages`` (where 2.7 is the
-MAJOR.MINOR version of Python you used to install the package), then
-you should use ``extends``. If Python libraries are installed elsewhere
-or the only files that get installed reside in ``prefix/bin``, then
-don't use ``extends``, as symlinking the package wouldn't be useful.
-
-^^^^^^^^^^^^^^^^^^^^^
-Alternatives to Spack
-^^^^^^^^^^^^^^^^^^^^^
-
-PyPI has hundreds of thousands of packages that are not yet in Spack,
-and ``pip`` may be a perfectly valid alternative to using Spack. The
-main advantage of Spack over ``pip`` is its ability to compile
-non-Python dependencies. It can also build cythonized versions of a
-package or link to an optimized BLAS/LAPACK library like MKL,
-resulting in calculations that run orders of magnitudes faster.
-Spack does not offer a significant advantage over other python-management
-systems for installing and using tools like flake8 and sphinx.
-But if you need packages with non-Python dependencies like
-numpy and scipy, Spack will be very valuable to you.
-
-Anaconda is another great alternative to Spack, and comes with its own
-``conda`` package manager. Like Spack, Anaconda is capable of compiling
-non-Python dependencies. Anaconda contains many Python packages that
-are not yet in Spack, and Spack contains many Python packages that are
-not yet in Anaconda. The main advantage of Spack over Anaconda is its
-ability to choose a specific compiler and BLAS/LAPACK or MPI library.
-Spack also has better platform support for supercomputers, and can build
-optimized binaries for your specific microarchitecture. On the other hand,
-Anaconda offers Windows support.
-
-^^^^^^^^^^^^^^^^^^^^^^
-External documentation
-^^^^^^^^^^^^^^^^^^^^^^
-
-For more information on Python packaging, see:
-https://packaging.python.org/

lib/spack/docs/build_systems/qmakepackage.rst

@@ -1,129 +0,0 @@
-.. Copyright 2013-2021 Lawrence Livermore National Security, LLC and other
-   Spack Project Developers. See the top-level COPYRIGHT file for details.
-
-   SPDX-License-Identifier: (Apache-2.0 OR MIT)
-
-.. _qmakepackage:
-
-------------
-QMakePackage
-------------
-
-Much like Autotools and CMake, QMake is a build-script generator
-designed by the developers of Qt. In its simplest form, Spack's
-``QMakePackage`` runs the following steps:
-
-.. code-block:: console
-
-   $ qmake
-   $ make
-   $ make check  # optional
-   $ make install
-
-
-QMake does not appear to have a standardized way of specifying
-the installation directory, so you may have to set environment
-variables or edit ``*.pro`` files to get things working properly.
-
-^^^^^^
-Phases
-^^^^^^
-
-The ``QMakePackage`` base class comes with the following phases:
-
-#. ``qmake`` - generate Makefiles
-#. ``build`` - build the project
-#. ``install`` - install the project
-
-By default, these phases run:
-
-.. code-block:: console
-
-   $ qmake
-   $ make
-   $ make install
-
-
-Any of these phases can be overridden in your package as necessary.
-There is also a ``check`` method that looks for a ``check`` target
-in the Makefile. If a ``check`` target exists and the user runs:
-
-.. code-block:: console
-
-   $ spack install --test=root <qmake-package>
-
-
-Spack will run ``make check`` after the build phase.
-
-^^^^^^^^^^^^^^^
-Important files
-^^^^^^^^^^^^^^^
-
-Packages that use the QMake build system can be identified by the
-presence of a ``<project-name>.pro`` file. This file declares things
-like build instructions and dependencies.
-
-One thing to look for is the ``minQtVersion`` function:
-
-.. code-block:: none
-
-   minQtVersion(5, 6, 0)
-
-
-This means that Qt 5.6.0 is the earliest release that will work.
-You should specify this in a ``depends_on`` statement.
-
-^^^^^^^^^^^^^^^^^^^^^^^^^
-Build system dependencies
-^^^^^^^^^^^^^^^^^^^^^^^^^
-
-At the bare minimum, packages that use the QMake build system need a
-``qt`` dependency. Since this is always the case, the ``QMakePackage``
-base class already contains:
-
-.. code-block:: python
-
-   depends_on('qt', type='build')
-
-
-If you want to specify a particular version requirement, or need to
-link to the ``qt`` libraries, you can override this in your package:
-
-.. code-block:: python
-
-   depends_on('qt@5.6.0:')
-
-^^^^^^^^^^^^^^^^^^^^^^^^^^
-Passing arguments to qmake
-^^^^^^^^^^^^^^^^^^^^^^^^^^
-
-If you need to pass any arguments to the ``qmake`` call, you can
-override the ``qmake_args`` method like so:
-
-.. code-block:: python
-
-   def qmake_args(self):
-       return ['-recursive']
-
-
-This method can be used to pass flags as well as variables.
-
-^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
-``*.pro`` file in a sub-directory
-^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
-
-If the ``*.pro`` file used to tell QMake how to build the package is
-found in a sub-directory, you can tell Spack to run all phases in this
-sub-directory by adding the following to the package:
-
-.. code-block:: python
-
-   build_directory = 'src'
-
-
-^^^^^^^^^^^^^^^^^^^^^^
-External documentation
-^^^^^^^^^^^^^^^^^^^^^^
-
-For more information on the QMake build system, see:
-http://doc.qt.io/qt-5/qmake-manual.html

lib/spack/docs/build_systems/rocmpackage.rst

@@ -1,122 +0,0 @@
-.. Copyright 2013-2021 Lawrence Livermore National Security, LLC and other
-   Spack Project Developers. See the top-level COPYRIGHT file for details.
-
-   SPDX-License-Identifier: (Apache-2.0 OR MIT)
-
-.. _rocmpackage:
-
------------
-ROCmPackage
------------
-
-The ``ROCmPackage`` is not a build system but a helper package. Like ``CudaPackage``,
-it provides standard variants, dependencies, and conflicts to facilitate building
-packages using GPUs though for AMD in this case.
-
-You can find the source for this package (and suggestions for setting up your
-``compilers.yaml`` and ``packages.yaml`` files) at
-`<https://github.com/spack/spack/blob/develop/lib/spack/spack/build_systems/rocm.py>`__.
-
-^^^^^^^^
-Variants
-^^^^^^^^
-
-This package provides the following variants:
-
-* **rocm**
-
-  This variant is used to enable/disable building with ``rocm``.  
-  The default is disabled (or ``False``).
-
-* **amdgpu_target**
-
-  This variant supports the optional specification of the AMD GPU architecture.
-  Valid values are the names of the GPUs (e.g., ``gfx701``), which are maintained
-  in the ``amdgpu_targets`` property.
-
-^^^^^^^^^^^^
-Dependencies
-^^^^^^^^^^^^
-
-This package defines basic ``rocm`` dependencies, including ``llvm`` and ``hip``.
-
-^^^^^^^^^
-Conflicts
-^^^^^^^^^
-
-Conflicts are used to prevent builds with known bugs or issues. This package
-already requires that the ``amdgpu_target`` always be specified for ``rocm``
-builds. It also defines a conflict that prevents builds with an ``amdgpu_target``
-when ``rocm`` is disabled.
-
-Refer to `Conflicts <https://spack.readthedocs.io/en/latest/packaging_guide.html?highlight=conflicts#conflicts>`__
-for more information on package conflicts.
-
-^^^^^^^
-Methods
-^^^^^^^
-
-This package provides one custom helper method, which is used to build
-standard AMD hip compiler flags.
-
-**hip_flags**
-
-    This built-in static method returns the appropriately formatted
-    ``--amdgpu-target`` build option for ``hipcc``.
-
-    This method must be explicitly called when you are creating the
-    arguments for your build in order to use the values.
-
-^^^^^
-Usage
-^^^^^
-
-This helper package can be added to your package by adding it as a base
-class of your package.  For example, you can add it to your
-:ref:`CMakePackage <cmakepackage>`-based package as follows:
-
-.. code-block:: python
-   :emphasize-lines: 1,3-7,14-25
-
-    class MyRocmPackage(CMakePackage, ROCmPackage):
-        ...
-        # Ensure +rocm and amdgpu_targets are passed to dependencies
-        depends_on('mydeppackage', when='+rocm')
-        for val in ROCmPackage.amdgpu_targets:
-            depends_on('mydeppackage amdgpu_target={0}'.format(val),
-                       when='amdgpu_target={0}'.format(val))
-        ...
-
-        def cmake_args(self):
-            spec = self.spec
-            args = []
-            ...
-            if '+rocm' in spec:
-                # Set up the hip macros needed by the build
-                args.extend([
-                    '-DENABLE_HIP=ON',
-                    '-DHIP_ROOT_DIR={0}'.format(spec['hip'].prefix])
-                rocm_archs = spec.variants['amdgpu_target'].value
-                if 'none' not in rocm_archs:
-                    args.append('-DHIP_HIPCC_FLAGS=--amdgpu-target={0}'
-                                .format(",".join(rocm_archs)))
-            else:
-                # Ensure build with hip is disabled
-                args.append('-DENABLE_HIP=OFF')
-            ...
-            return args
-        ...
-
-assuming only on the ``ENABLE_HIP``, ``HIP_ROOT_DIR``, and ``HIP_HIPCC_FLAGS``
-macros are required to be set and the only dependency needing rocm options
-is ``mydeppackage``. You will need to customize the flags as needed for your
-build.
-
-This example also illustrates how to check for the ``rocm`` variant using
-``self.spec`` and how to retrieve the ``amdgpu_target`` variant's value
-using ``self.spec.variants['amdgpu_target'].value``.
-
-All five packages using ``ROCmPackage`` as of January 2021 also use the
-:ref:`CudaPackage <cudapackage>`. So it is worth looking at those packages
-to get ideas for creating a package that can support both ``cuda`` and
-``rocm``.

lib/spack/docs/build_systems/rpackage.rst

@@ -1,428 +0,0 @@
-.. Copyright 2013-2021 Lawrence Livermore National Security, LLC and other
-   Spack Project Developers. See the top-level COPYRIGHT file for details.
-
-   SPDX-License-Identifier: (Apache-2.0 OR MIT)
-
-.. _rpackage:
-
---------
-RPackage
---------
-
-Like Python, R has its own built-in build system.
-
-The R build system is remarkably uniform and well-tested.
-This makes it one of the easiest build systems to create
-new Spack packages for.
-
-^^^^^^
-Phases
-^^^^^^
-
-The ``RPackage`` base class has a single phase:
-
-#. ``install`` - install the package
-
-By default, this phase runs the following command:
-
-.. code-block:: console
-
-   $ R CMD INSTALL --library=/path/to/installation/prefix/rlib/R/library .
-
-
-^^^^^^^^^^^^^^^^^^
-Finding R packages
-^^^^^^^^^^^^^^^^^^
-
-The vast majority of R packages are hosted on CRAN - The Comprehensive
-R Archive Network. If you are looking for a particular R package, search
-for "CRAN <package-name>" and you should quickly find what you want.
-If it isn't on CRAN, try Bioconductor, another common R repository.
-
-For the purposes of this tutorial, we will be walking through
-`r-caret <https://github.com/spack/spack/blob/develop/var/spack/repos/builtin/packages/r-caret/package.py>`_
-as an example. If you search for "CRAN caret", you will quickly find what
-you are looking for at https://cran.r-project.org/package=caret.
-https://cran.r-project.org is the main CRAN website. However, CRAN also
-has a https://cloud.r-project.org site that automatically redirects to
-`mirrors around the world <https://cloud.r-project.org/mirrors.html>`_.
-For stability and performance reasons, we will use https://cloud.r-project.org/package=caret.
-If you search for "Package source", you will find the download URL for
-the latest release. Use this URL with ``spack create`` to create a new
-package.
-
-^^^^^^^^^^^^
-Package name
-^^^^^^^^^^^^
-
-The first thing you'll notice is that Spack prepends ``r-`` to the front
-of the package name. This is how Spack separates R package extensions
-from the rest of the packages in Spack. Without this, we would end up
-with package name collisions more frequently than we would like. For
-instance, there are already packages for both:
-
-* ``ape`` and ``r-ape``
-* ``curl`` and ``r-curl``
-* ``gmp`` and ``r-gmp``
-* ``jpeg`` and ``r-jpeg``
-* ``openssl`` and ``r-openssl``
-* ``uuid`` and ``r-uuid``
-* ``xts`` and ``r-xts``
-
-Many popular programs written in C/C++ are later ported to R as a
-separate project.
-
-^^^^^^^^^^^
-Description
-^^^^^^^^^^^
-
-The first thing you'll need to add to your new package is a description.
-The top of the homepage for ``caret`` lists the following description:
-
-   Classification and Regression Training
-
-   Misc functions for training and plotting classification and regression models.
-
-The first line is a short description (title) and the second line is a long
-description. In this case the description is only one line but often the
-description is several lines. Spack makes use of both short and long
-descriptions and convention is to use both when creating an R  package.
-
-^^^^^^^^
-Homepage
-^^^^^^^^
-
-If you look at the bottom of the page, you'll see:
-
-   Linking:
-
-   Please use the canonical form https://CRAN.R-project.org/package=caret to link to this page.
-
-Please uphold the wishes of the CRAN admins and use
-https://cloud.r-project.org/package=caret as the homepage instead of
-https://cloud.r-project.org/web/packages/caret/index.html. The latter may
-change without notice.
-
-^^^
-URL
-^^^
-
-As previously mentioned, the download URL for the latest release can be
-found by searching "Package source" on the homepage.
-
-^^^^^^^^
-List URL
-^^^^^^^^
-
-CRAN maintains a single webpage containing the latest release of every
-single package: https://cloud.r-project.org/src/contrib/
-
-Of course, as soon as a new release comes out, the version you were using
-in your package is no longer available at that URL. It is moved to an
-archive directory. If you search for "Old sources", you will find:
-https://cloud.r-project.org/src/contrib/Archive/caret
-
-If you only specify the URL for the latest release, your package will
-no longer be able to fetch that version as soon as a new release comes
-out. To get around this, add the archive directory as a ``list_url``.
-
-^^^^^^^^^^^^^^^^^^^^^
-Bioconductor packages
-^^^^^^^^^^^^^^^^^^^^^
-
-Bioconductor packages are set up in a similar way to CRAN packages, but there
-are some very important distinctions. Bioconductor packages can be found at:
-https://bioconductor.org/. Bioconductor packages are R packages and so follow
-the same packaging scheme as CRAN packages. What is different is that
-Bioconductor itself is versioned and released. This scheme, using the
-Bioconductor package installer, allows further specification of the minimum
-version of R as well as further restrictions on the dependencies between
-packages than what is possible with the native R packaging system. Spack can
-not replicate these extra features and thus Bioconductor packages in Spack need
-to be managed as a group during updates in order to maintain package
-consistency with Bioconductor itself.
-
-Another key difference is that, while previous versions of packages are
-available, they are not available from a site that can be programmatically set,
-thus a ``list_url`` attribute can not be used. However, each package is also
-available in a git repository, with branches corresponding to each Bioconductor
-release. Thus, it is always possible to retrieve the version of any package
-corresponding to a Bioconductor release simply by fetching the branch that
-corresponds to the Bioconductor release of the package repository. For this
-reason, spack Bioconductor R packages use the git repository, with the commit
-of the respective branch used in the ``version()`` attribute of the package.
-
-^^^^^^^^^^^^^^^^^^^^^^^^
-cran and bioc attributes
-^^^^^^^^^^^^^^^^^^^^^^^^
-
-Much like the ``pypi`` attribute for python packages, due to the fact that R
-packages are obtained from specific repositories, it is possible to set up shortcut
-attributes that can be used to set ``homepage``, ``url``, ``list_url``, and
-``git``. For example, the following ``cran`` attribute:
-
-.. code-block:: python
-
-   cran = 'caret'
-
-is equivalent to:
-
-.. code-block:: python
-
-   homepage = 'https://cloud.r-project.org/package=caret'
-   url      = 'https://cloud.r-project.org/src/contrib/caret_6.0-86.tar.gz'
-   list_url = 'https://cloud.r-project.org/src/contrib/Archive/caret'
-
-Likewise, the following ``bioc`` attribute:
-
-.. code-block:: python
-
-   bioc = 'BiocVersion'
-
-is equivalent to:
-
-.. code-block:: python
-
-   homepage = 'https://bioconductor.org/packages/BiocVersion/'
-   git      = 'https://git.bioconductor.org/packages/BiocVersion'
-
-
-^^^^^^^^^^^^^^^^^^^^^^^^^
-Build system dependencies
-^^^^^^^^^^^^^^^^^^^^^^^^^
-
-As an extension of the R ecosystem, your package will obviously depend
-on R to build and run. Normally, we would use ``depends_on`` to express
-this, but for R packages, we use ``extends``. ``extends`` is similar to
-``depends_on``, but adds an additional feature: the ability to "activate"
-the package by symlinking it to the R installation directory. Since
-every R package needs this, the ``RPackage`` base class contains:
-
-.. code-block:: python
-
-   extends('r')
-
-
-Take a close look at the homepage for ``caret``. If you look at the
-"Depends" section, you'll notice that ``caret`` depends on "R (≥ 3.2.0)".
-You should add this to your package like so:
-
-.. code-block:: python
-
-   depends_on('r@3.2.0:', type=('build', 'run'))
-
-
-^^^^^^^^^^^^^^
-R dependencies
-^^^^^^^^^^^^^^
-
-R packages are often small and follow the classic Unix philosophy
-of doing one thing well. They are modular and usually depend on
-several other packages. You may find a single package with over a
-hundred dependencies. Luckily, R packages are well-documented
-and list all of their dependencies in the following sections:
-
-* Depends
-* Imports
-* LinkingTo
-
-As far as Spack is concerned, all 3 of these dependency types
-correspond to ``type=('build', 'run')``, so you don't have to worry
-about the details. If you are curious what they mean,
-https://github.com/spack/spack/issues/2951 has a pretty good summary:
-
-   ``Depends`` is required and will cause those R packages to be *attached*,
-   that is, their APIs are exposed to the user. ``Imports`` *loads* packages
-   so that *the package* importing these packages can access their APIs,
-   while *not* being exposed to the user. When a user calls ``library(foo)``
-   s/he *attaches* package ``foo`` and all of the packages under ``Depends``.
-   Any function in one of these package can be called directly as ``bar()``.
-   If there are conflicts, user can also specify ``pkgA::bar()`` and
-   ``pkgB::bar()`` to distinguish between them. Historically, there was only
-   ``Depends`` and ``Suggests``, hence the confusing names. Today, maybe
-   ``Depends`` would have been named ``Attaches``.
-
-   The ``LinkingTo`` is not perfect and there was recently an extensive
-   discussion about API/ABI among other things on the R-devel mailing
-   list among very skilled R developers:
-
-   * https://stat.ethz.ch/pipermail/r-devel/2016-December/073505.html
-   * https://stat.ethz.ch/pipermail/r-devel/2017-January/073647.html
-
-Some packages also have a fourth section:
-
-* Suggests
-
-These are optional, rarely-used dependencies that a user might find
-useful. You should **NOT** add these dependencies to your package.
-R packages already have enough dependencies as it is, and adding
-optional dependencies can really slow down the concretization
-process. They can also introduce circular dependencies.
-
-A fifth rarely used section is:
-
-* Enhances
-
-This means that the package can be used as an optional dependency
-for another package. Again, these packages should **NOT** be listed
-as dependencies.
-
-^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
-Core, recommended, and non-core packages
-^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
-
-If you look at "Depends", "Imports", and "LinkingTo", you will notice
-3 different types of packages:
-
-"""""""""""""
-Core packages
-"""""""""""""
-
-If you look at the ``caret`` homepage, you'll notice a few dependencies
-that don't have a link to the package, like ``methods``, ``stats``, and
-``utils``. These packages are part of the core R distribution and are
-tied to the R version installed. You can basically consider these to be
-"R itself". These are so essential to R that it would not make sense for
-them to be updated via CRAN. If you did, you would basically get a different
-version of R. Thus, they're updated when R is updated.
-
-You can find a list of these core libraries at:
-https://github.com/wch/r-source/tree/trunk/src/library
-
-""""""""""""""""""""
-Recommended packages
-""""""""""""""""""""
-
-When you install R, there is an option called ``--with-recommended-packages``.
-This flag causes the R installation to include a few "Recommended" packages
-(legacy term). They are for historical reasons quite tied to the core R
-distribution, developed by the R core team or people closely related to it.
-The R core distribution "knows" about these package, but they are indeed
-distributed via CRAN. Because they're distributed via CRAN, they can also be
-updated between R version releases.
-
-Spack explicitly adds the ``--without-recommended-packages`` flag to prevent
-the installation of these packages. Due to the way Spack handles package
-activation (symlinking packages to the R installation directory),
-pre-existing recommended packages will cause conflicts for already-existing
-files. We could either not include these recommended packages in Spack and
-require them to be installed through ``--with-recommended-packages``, or
-we could not install them with R and let users choose the version of the
-package they want to install. We chose the latter.
-
-Since these packages are so commonly distributed with the R system, many
-developers may assume these packages exist and fail to list them as
-dependencies. Watch out for this.
-
-You can find a list of these recommended packages at:
-https://github.com/wch/r-source/blob/trunk/share/make/vars.mk
-
-"""""""""""""""""
-Non-core packages
-"""""""""""""""""
-
-These are packages that are neither "core" nor "recommended". There are more
-than 10,000 of these packages hosted on CRAN alone.
-
-For each of these package types, if you see that a specific version is
-required, for example, "lattice (≥ 0.20)", please add this information to
-the dependency:
-
-.. code-block:: python
-
-   depends_on('r-lattice@0.20:', type=('build', 'run'))
-
-
-^^^^^^^^^^^^^^^^^^
-Non-R dependencies
-^^^^^^^^^^^^^^^^^^
-
-Some packages depend on non-R libraries for linking. Check out the
-`r-stringi <https://github.com/spack/spack/blob/develop/var/spack/repos/builtin/packages/r-stringi/package.py>`_
-package for an example: https://cloud.r-project.org/package=stringi.
-If you search for the text "SystemRequirements", you will see:
-
-   ICU4C (>= 52, optional)
-
-This is how non-R dependencies are listed. Make sure to add these
-dependencies. The default dependency type should suffice.
-
-^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
-Passing arguments to the installation
-^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
-
-Some R packages provide additional flags that can be passed to
-``R CMD INSTALL``, often to locate non-R dependencies.
-`r-rmpi <https://github.com/spack/spack/blob/develop/var/spack/repos/builtin/packages/r-rmpi/package.py>`_
-is an example of this, and flags for linking to an MPI library. To pass
-these to the installation command, you can override ``configure_args``
-like so:
-
-.. code-block:: python
-
-   def configure_args(self):
-       mpi_name = self.spec['mpi'].name
-
-       # The type of MPI. Supported values are:
-       # OPENMPI, LAM, MPICH, MPICH2, or CRAY
-       if mpi_name == 'openmpi':
-           Rmpi_type = 'OPENMPI'
-       elif mpi_name == 'mpich':
-           Rmpi_type = 'MPICH2'
-       else:
-           raise InstallError('Unsupported MPI type')
-
-       return [
-           '--with-Rmpi-type={0}'.format(Rmpi_type),
-           '--with-mpi={0}'.format(spec['mpi'].prefix),
-       ]
-
-
-There is a similar ``configure_vars`` function that can be overridden
-to pass variables to the build.
-
-^^^^^^^^^^^^^^^^^^^^^
-Alternatives to Spack
-^^^^^^^^^^^^^^^^^^^^^
-
-CRAN hosts over 10,000 R packages, most of which are not in Spack. Many
-users may not need the advanced features of Spack, and may prefer to
-install R packages the normal way:
-
-.. code-block:: console
-
-   $ R
-   > install.packages("ggplot2")
-
-
-R will search CRAN for the ``ggplot2`` package and install all necessary
-dependencies for you. If you want to update all installed R packages to
-the latest release, you can use:
-
-.. code-block:: console
-
-   > update.packages(ask = FALSE)
-
-
-This works great for users who have internet access, but those on an
-air-gapped cluster will find it easier to let Spack build a download
-mirror and install these packages for you.
-
-Where Spack really shines is its ability to install non-R dependencies
-and link to them properly, something the R installation mechanism
-cannot handle.
-
-^^^^^^^^^^^^^^^^^^^^^^
-External documentation
-^^^^^^^^^^^^^^^^^^^^^^
-
-For more information on installing R packages, see:
-https://stat.ethz.ch/R-manual/R-devel/library/utils/html/INSTALL.html
-
-For more information on writing R packages, see:
-https://cloud.r-project.org/doc/manuals/r-release/R-exts.html
-
-In particular,
-https://cloud.r-project.org/doc/manuals/r-release/R-exts.html#Package-Dependencies
-has a great explanation of the difference between Depends, Imports,
-and LinkingTo.

lib/spack/docs/build_systems/rubypackage.rst

@@ -1,183 +0,0 @@
-.. Copyright 2013-2021 Lawrence Livermore National Security, LLC and other
-   Spack Project Developers. See the top-level COPYRIGHT file for details.
-
-   SPDX-License-Identifier: (Apache-2.0 OR MIT)
-
-.. _rubypackage:
-
------------
-RubyPackage
------------
-
-Like Perl, Python, and R, Ruby has its own build system for
-installing Ruby gems.
-
-^^^^^^
-Phases
-^^^^^^
-
-The ``RubyPackage`` base class provides the following phases that
-can be overridden:
-
-#. ``build`` - build everything needed to install
-#. ``install`` - install everything from build directory
-
-For packages that come with a ``*.gemspec`` file, these phases run:
-
-.. code-block:: console
-
-   $ gem build *.gemspec
-   $ gem install *.gem
-
-
-For packages that come with a ``Rakefile`` file, these phases run:
-
-.. code-block:: console
-
-   $ rake package
-   $ gem install *.gem
-
-
-For packages that come pre-packaged as a ``*.gem`` file, the build
-phase is skipped and the install phase runs:
-
-.. code-block:: console
-
-   $ gem install *.gem
-
-
-These are all standard ``gem`` commands and can be found by running:
-
-.. code-block:: console
-
-   $ gem help commands
-
-
-For packages that only distribute ``*.gem`` files, these files can be
-downloaded with the ``expand=False`` option in the ``version`` directive.
-The build phase will be automatically skipped.
-
-^^^^^^^^^^^^^^^
-Important files
-^^^^^^^^^^^^^^^
-
-When building from source, Ruby packages can be identified by the
-presence of any of the following files:
-
-* ``*.gemspec``
-* ``Rakefile``
-* ``setup.rb`` (not yet supported)
-
-However, not all Ruby packages are released as source code. Some are only
-released as ``*.gem`` files. These files can be extracted using:
-
-.. code-block:: console
-
-   $ gem unpack *.gem
-
-
-^^^^^^^^^^^
-Description
-^^^^^^^^^^^
-
-The ``*.gemspec`` file may contain something like:
-
-.. code-block:: ruby
-
-   summary = 'An implementation of the AsciiDoc text processor and publishing toolchain'
-   description = 'A fast, open source text processor and publishing toolchain for converting AsciiDoc content to HTML 5, DocBook 5, and other formats.'
-
-
-Either of these can be used for the description of the Spack package.
-
-^^^^^^^^
-Homepage
-^^^^^^^^
-
-The ``*.gemspec`` file may contain something like:
-
-.. code-block:: ruby
-
-   homepage = 'https://asciidoctor.org'
-
-
-This should be used as the official homepage of the Spack package.
-
-^^^^^^^^^^^^^^^^^^^^^^^^^
-Build system dependencies
-^^^^^^^^^^^^^^^^^^^^^^^^^
-
-All Ruby packages require Ruby at build and run-time. For this reason,
-the base class contains:
-
-.. code-block:: python
-
-   extends('ruby')
-
-
-The ``*.gemspec`` file may contain something like:
-
-.. code-block:: ruby
-
-   required_ruby_version = '>= 2.3.0'
-
-
-This can be added to the Spack package using:
-
-.. code-block:: python
-
-   depends_on('ruby@2.3.0:', type=('build', 'run'))
-
-
-^^^^^^^^^^^^^^^^^
-Ruby dependencies
-^^^^^^^^^^^^^^^^^
-
-When you install a package with ``gem``, it reads the ``*.gemspec``
-file in order to determine the dependencies of the package.
-If the dependencies are not yet installed, ``gem`` downloads them
-and installs them for you. This may sound convenient, but Spack
-cannot rely on this behavior for two reasons:
-
-#. Spack needs to be able to install packages on air-gapped networks.
-
-   If there is no internet connection, ``gem`` can't download the
-   package dependencies. By explicitly listing every dependency in
-   the ``package.py``, Spack knows what to download ahead of time.
-
-#. Duplicate installations of the same dependency may occur.
-
-   Spack supports *activation* of Ruby extensions, which involves
-   symlinking the package installation prefix to the Ruby installation
-   prefix. If your package is missing a dependency, that dependency
-   will be installed to the installation directory of the same package.
-   If you try to activate the package + dependency, it may cause a
-   problem if that package has already been activated.
-
-For these reasons, you must always explicitly list all dependencies.
-Although the documentation may list the package's dependencies,
-often the developers assume people will use ``gem`` and won't have to
-worry about it. Always check the ``*.gemspec`` file to find the true
-dependencies.
-
-Check for the following clues in the ``*.gemspec`` file:
-
-* ``add_runtime_dependency``
-
-  These packages are required for installation.
-
-* ``add_dependency``
-
-  This is an alias for ``add_runtime_dependency``
-
-* ``add_development_dependency``
-
-  These packages are optional dependencies used for development.
-  They should not be added as dependencies of the package.
-
-^^^^^^^^^^^^^^^^^^^^^^
-External documentation
-^^^^^^^^^^^^^^^^^^^^^^
-
-For more information on Ruby packaging, see:
-https://guides.rubygems.org/