Apply fix suggested by @becker33 to copy over relatives includes at env creation

This reverts commit ca65fff09a.

.github/workflows/build-containers.yml

@@ -40,17 +40,17 @@ jobs:
         # 1: Platforms to build for
         # 2: Base image (e.g. ubuntu:22.04)
         dockerfile: [[amazon-linux, 'linux/amd64,linux/arm64', 'amazonlinux:2'],
-                     [centos-stream9, 'linux/amd64,linux/arm64', 'centos:stream9'],
+                     [centos-stream9, 'linux/amd64,linux/arm64,linux/ppc64le', 'centos:stream9'],
-                     [leap15, 'linux/amd64,linux/arm64', 'opensuse/leap:15'],
+                     [leap15, 'linux/amd64,linux/arm64,linux/ppc64le', 'opensuse/leap:15'],
-                     [ubuntu-focal, 'linux/amd64,linux/arm64', 'ubuntu:20.04'],
+                     [ubuntu-focal, 'linux/amd64,linux/arm64,linux/ppc64le', 'ubuntu:20.04'],
-                     [ubuntu-jammy, 'linux/amd64,linux/arm64', 'ubuntu:22.04'],
+                     [ubuntu-jammy, 'linux/amd64,linux/arm64,linux/ppc64le', 'ubuntu:22.04'],
-                     [ubuntu-noble, 'linux/amd64,linux/arm64', 'ubuntu:24.04'],
+                     [ubuntu-noble, 'linux/amd64,linux/arm64,linux/ppc64le', 'ubuntu:24.04'],
-                     [almalinux8, 'linux/amd64,linux/arm64', 'almalinux:8'],
+                     [almalinux8, 'linux/amd64,linux/arm64,linux/ppc64le', 'almalinux:8'],
-                     [almalinux9, 'linux/amd64,linux/arm64', 'almalinux:9'],
+                     [almalinux9, 'linux/amd64,linux/arm64,linux/ppc64le', 'almalinux:9'],
                      [rockylinux8, 'linux/amd64,linux/arm64', 'rockylinux:8'],
                      [rockylinux9, 'linux/amd64,linux/arm64', 'rockylinux:9'],
-                     [fedora39, 'linux/amd64,linux/arm64', 'fedora:39'],
+                     [fedora39, 'linux/amd64,linux/arm64,linux/ppc64le', 'fedora:39'],
-                     [fedora40, 'linux/amd64,linux/arm64', 'fedora:40']]
+                     [fedora40, 'linux/amd64,linux/arm64,linux/ppc64le', 'fedora:40']]
     name: Build ${{ matrix.dockerfile[0] }}
     if: github.repository == 'spack/spack'
     steps:

.github/workflows/ci.yaml

@@ -9,7 +9,6 @@ on:
     branches:
       - develop
       - releases/**
-  merge_group:
 
 concurrency:
   group: ci-${{github.ref}}-${{github.event.pull_request.number || github.run_number}}
@@ -26,17 +25,13 @@ jobs:
       packages: ${{ steps.filter.outputs.packages }}
     steps:
       - uses: actions/checkout@11bd71901bbe5b1630ceea73d27597364c9af683
-        if: ${{ github.event_name == 'push' || github.event_name == 'merge_group' }}
+        if: ${{ github.event_name == 'push' }}
         with:
           fetch-depth: 0
             # For pull requests it's not necessary to checkout the code
       - uses: dorny/paths-filter@de90cc6fb38fc0963ad72b210f1f284cd68cea36
         id: filter
         with:
-          # For merge group events, compare against the target branch (main)
-          base: ${{ github.event_name == 'merge_group' && github.event.merge_group.base_ref || '' }}
-          # For merge group events, use the merge group head ref
-          ref: ${{ github.event_name == 'merge_group' && github.event.merge_group.head_sha || github.ref }}
           # See https://github.com/dorny/paths-filter/issues/56 for the syntax used below
           # Don't run if we only modified packages in the
           # built-in repository or documentation
@@ -81,15 +76,10 @@ jobs:
 
   prechecks:
     needs: [ changes ]
-    uses: ./.github/workflows/prechecks.yml
+    uses: ./.github/workflows/valid-style.yml
     secrets: inherit
     with:
       with_coverage: ${{ needs.changes.outputs.core }}
-      with_packages: ${{ needs.changes.outputs.packages }}
-
-  import-check:
-    needs: [ changes ]
-    uses: ./.github/workflows/import-check.yaml
 
   all-prechecks:
     needs: [ prechecks ]
@@ -107,7 +97,6 @@ jobs:
 
   coverage:
     needs: [ unit-tests, prechecks ]
-    if: ${{ needs.changes.outputs.core }}
     uses: ./.github/workflows/coverage.yml
     secrets: inherit
 

.github/workflows/coverage.yml

@@ -33,4 +33,3 @@ jobs:
       with:
         verbose: true
         fail_ci_if_error: false
-        token: ${{ secrets.CODECOV_TOKEN }}

.github/workflows/import-check.yaml

@@ -1,49 +0,0 @@
-name: import-check
-
-on:
-  workflow_call:
-
-jobs:
-  # Check we don't make the situation with circular imports worse
-  import-check:
-    runs-on: ubuntu-latest
-    steps:
-    - uses: julia-actions/setup-julia@v2
-      with:
-        version: '1.10'
-    - uses: julia-actions/cache@v2
-
-    # PR: use the base of the PR as the old commit
-    - name: Checkout PR base commit
-      if: github.event_name == 'pull_request'
-      uses: actions/checkout@11bd71901bbe5b1630ceea73d27597364c9af683
-      with:
-        ref: ${{ github.event.pull_request.base.sha }}
-        path: old
-    # not a PR: use the previous commit as the old commit
-    - name: Checkout previous commit
-      if: github.event_name != 'pull_request'
-      uses: actions/checkout@11bd71901bbe5b1630ceea73d27597364c9af683
-      with:
-        fetch-depth: 2
-        path: old
-    - name: Checkout previous commit
-      if: github.event_name != 'pull_request'
-      run: git -C old reset --hard HEAD^
-
-    - name: Checkout new commit
-      uses: actions/checkout@11bd71901bbe5b1630ceea73d27597364c9af683
-      with:
-        path: new
-    - name: Install circular import checker
-      uses: actions/checkout@11bd71901bbe5b1630ceea73d27597364c9af683
-      with:
-        repository: haampie/circular-import-fighter
-        ref: 4cdb0bf15f04ab6b49041d5ef1bfd9644cce7f33
-        path: circular-import-fighter
-    - name: Install dependencies
-      working-directory: circular-import-fighter
-      run: make -j dependencies
-    - name: Circular import check
-      working-directory: circular-import-fighter
-      run: make -j compare "SPACK_ROOT=../old ../new"

.github/workflows/requirements/style/requirements.txt

@@ -1,7 +1,7 @@
-black==25.1.0
+black==24.10.0
 clingo==5.7.1
-flake8==7.1.2
+flake8==7.1.1
-isort==6.0.1
+isort==5.13.2
-mypy==1.15.0
+mypy==1.11.2
-types-six==1.17.0.20250304
+types-six==1.17.0.20241205
 vermin==1.6.0

.github/workflows/valid-style.yml

@@ -1,4 +1,4 @@
-name: prechecks
+name: style
 
 on:
   workflow_call:
@@ -6,9 +6,6 @@ on:
       with_coverage:
         required: true
         type: string
-      with_packages:
-        required: true
-        type: string
 
 concurrency:
   group: style-${{github.ref}}-${{github.event.pull_request.number || github.run_number}}
@@ -33,7 +30,6 @@ jobs:
       run: vermin --backport importlib --backport argparse --violations --backport typing -t=3.6- -vvv lib/spack/spack/ lib/spack/llnl/ bin/
     - name: vermin (Repositories)
       run: vermin --backport importlib --backport argparse --violations --backport typing -t=3.6- -vvv var/spack/repos
-
   # Run style checks on the files that have been changed
   style:
     runs-on: ubuntu-latest
@@ -57,25 +53,12 @@ jobs:
     - name: Run style tests
       run: |
           share/spack/qa/run-style-tests
-
   audit:
     uses: ./.github/workflows/audit.yaml
     secrets: inherit
     with:
       with_coverage: ${{ inputs.with_coverage }}
       python_version: '3.13'
-
-  verify-checksums:
-    if: ${{ inputs.with_packages == 'true' }}
-    runs-on: ubuntu-latest
-    steps:
-    - uses: actions/checkout@a5ac7e51b41094c92402da3b24376905380afc29
-      with:
-        fetch-depth: 2
-    - name: Verify Added Checksums
-      run: |
-        bin/spack ci verify-versions HEAD^1 HEAD
-
   # Check that spack can bootstrap the development environment on Python 3.6 - RHEL8
   bootstrap-dev-rhel8:
     runs-on: ubuntu-latest
@@ -103,6 +86,66 @@ jobs:
           spack -d bootstrap now --dev
           spack -d style -t black
           spack unit-test -V
+  # Check we don't make the situation with circular imports worse
+  import-check:
+    runs-on: ubuntu-latest
+    steps:
+    - uses: julia-actions/setup-julia@v2
+      with:
+        version: '1.10'
+    - uses: julia-actions/cache@v2
+
+    # PR: use the base of the PR as the old commit
+    - name: Checkout PR base commit
+      if: github.event_name == 'pull_request'
+      uses: actions/checkout@11bd71901bbe5b1630ceea73d27597364c9af683
+      with:
+        ref: ${{ github.event.pull_request.base.sha }}
+        path: old
+    # not a PR: use the previous commit as the old commit
+    - name: Checkout previous commit
+      if: github.event_name != 'pull_request'
+      uses: actions/checkout@11bd71901bbe5b1630ceea73d27597364c9af683
+      with:
+        fetch-depth: 2
+        path: old
+    - name: Checkout previous commit
+      if: github.event_name != 'pull_request'
+      run: git -C old reset --hard HEAD^
+
+    - name: Checkout new commit
+      uses: actions/checkout@11bd71901bbe5b1630ceea73d27597364c9af683
+      with:
+        path: new
+    - name: Install circular import checker
+      uses: actions/checkout@11bd71901bbe5b1630ceea73d27597364c9af683
+      with:
+        repository: haampie/circular-import-fighter
+        ref: b5d6ce9be35f602cca7d5a6aa0259fca10639cca
+        path: circular-import-fighter
+    - name: Install dependencies
+      working-directory: circular-import-fighter
+      run: make -j dependencies
+    - name: Problematic imports before
+      working-directory: circular-import-fighter
+      run: make SPACK_ROOT=../old SUFFIX=.old
+    - name: Problematic imports after
+      working-directory: circular-import-fighter
+      run: make SPACK_ROOT=../new SUFFIX=.new
+    - name: Compare import cycles
+      working-directory: circular-import-fighter
+      run: |
+        edges_before="$(head -n1 solution.old)"
+        edges_after="$(head -n1 solution.new)"
+        if [ "$edges_after" -gt "$edges_before" ]; then
+          printf '\033[1;31mImport check failed: %s imports need to be deleted, ' "$edges_after"
+          printf 'previously this was %s\033[0m\n'  "$edges_before"
+          printf 'Compare \033[1;97m"Problematic imports before"\033[0m and '
+          printf '\033[1;97m"Problematic imports after"\033[0m.\n'
+          exit 1
+        else
+          printf '\033[1;32mImport check passed: %s <= %s\033[0m\n' "$edges_after" "$edges_before"
+        fi
 
   # Further style checks from pylint
   pylint:

.gitignore

@@ -201,6 +201,7 @@ tramp
 
 # Org-mode
 .org-id-locations
+*_archive
 
 # flymake-mode
 *_flymake.*

bin/spack

@@ -25,6 +25,7 @@ exit 1
 # The code above runs this file with our preferred python interpreter.
 
 import os
+import os.path
 import sys
 
 min_python3 = (3, 6)

etc/spack/defaults/concretizer.yaml

@@ -43,28 +43,6 @@ concretizer:
     # (e.g. py-setuptools, cmake etc.)
     # "full" (experimental): allows separation of the entire build-tool stack (e.g. the entire "cmake" subDAG)
     strategy: minimal
-    # Maximum number of duplicates in a DAG, when using a strategy that allows duplicates. "default" is the
-    # number used if there isn't a more specific alternative
-    max_dupes:
-      default: 1
-      # Virtuals
-      c: 2
-      cxx: 2
-      fortran: 1
-      # Regular packages
-      cmake: 2
-      gmake: 2
-      python: 2
-      python-venv: 2
-      py-cython: 2
-      py-flit-core: 2
-      py-pip: 2
-      py-setuptools: 2
-      py-wheel: 2
-      xcb-proto: 2
-      # Compilers
-      gcc: 2
-      llvm: 2
   # Option to specify compatibility between operating systems for reuse of compilers and packages
   # Specified as a key: [list] where the key is the os that is being targeted, and the list contains the OS's
   # it can reuse. Note this is a directional compatibility so mutual compatibility between two OS's
@@ -85,7 +63,3 @@ concretizer:
   # Setting this to false yields unreproducible results, so we advise to use that value only
   # for debugging purposes (e.g. check which constraints can help Spack concretize faster).
   error_on_timeout: true
-
-  # Static analysis may reduce the concretization time by generating smaller ASP problems, in
-  # cases where there are requirements that prevent part of the search space to be explored.
-  static_analysis: false

etc/spack/defaults/config.yaml

@@ -19,7 +19,7 @@ config:
   install_tree:
     root: $spack/opt/spack
     projections:
-      all: "{architecture.platform}-{architecture.target}/{name}-{version}-{hash}"
+      all: "{architecture}/{compiler.name}-{compiler.version}/{name}-{version}-{hash}"
     # install_tree can include an optional padded length (int or boolean)
     # default is False (do not pad)
     # if padded_length is True, Spack will pad as close to the system max path

etc/spack/defaults/darwin/packages.yaml

@@ -15,11 +15,12 @@
 # -------------------------------------------------------------------------
 packages:
   all:
+    compiler:
+    - apple-clang
+    - clang
+    - gcc
     providers:
-      c: [apple-clang, llvm, gcc]
-      cxx: [apple-clang, llvm, gcc]
       elf: [libelf]
-      fortran: [gcc]
       fuse: [macfuse]
       gl: [apple-gl]
       glu: [apple-glu]
@@ -49,12 +50,3 @@ packages:
     # although the version number used here isn't critical
     - spec: apple-libuuid@1353.100.2
       prefix: /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk
-  c:
-    prefer:
-    - apple-clang
-  cxx:
-    prefer:
-    - apple-clang
-  fortran:
-    prefer:
-    - gcc

etc/spack/defaults/packages.yaml

@@ -15,18 +15,19 @@
 # -------------------------------------------------------------------------
 packages:
   all:
+    compiler: [gcc, clang, oneapi, xl, nag, fj, aocc]
     providers:
       awk: [gawk]
       armci: [armcimpi]
       blas: [openblas, amdblis]
-      c: [gcc, llvm, intel-oneapi-compilers]
+      c: [gcc]
-      cxx: [gcc, llvm, intel-oneapi-compilers]
+      cxx: [gcc]
       D: [ldc]
       daal: [intel-oneapi-daal]
       elf: [elfutils]
       fftw-api: [fftw, amdfftw]
       flame: [libflame, amdlibflame]
-      fortran: [gcc, llvm, intel-oneapi-compilers]
+      fortran: [gcc]
       fortran-rt: [gcc-runtime, intel-oneapi-runtime]
       fuse: [libfuse]
       gl: [glx, osmesa]
@@ -35,7 +36,7 @@ packages:
       go-or-gccgo-bootstrap: [go-bootstrap, gcc]
       iconv: [libiconv]
       ipp: [intel-oneapi-ipp]
-      java: [openjdk, jdk]
+      java: [openjdk, jdk, ibm-java]
       jpeg: [libjpeg-turbo, libjpeg]
       lapack: [openblas, amdlibflame]
       libc: [glibc, musl]
@@ -72,27 +73,15 @@ packages:
     permissions:
       read: world
       write: user
-  cray-fftw:
-    buildable: false
-  cray-libsci:
-    buildable: false
   cray-mpich:
     buildable: false
   cray-mvapich2:
     buildable: false
-  cray-pmi:
-    buildable: false
   egl:
     buildable: false
-  essl:
-    buildable: false
   fujitsu-mpi:
     buildable: false
-  fujitsu-ssl2:
-    buildable: false
   hpcx-mpi:
     buildable: false
-  mpt:
-    buildable: false
   spectrum-mpi:
     buildable: false

etc/spack/defaults/windows/config.yaml

@@ -1,5 +1,5 @@
 config:
   locks: false
   build_stage::
-    - '$user_cache_path/stage'
+    - '$spack/.staging'
   stage_name: '{name}-{version}-{hash:7}'

etc/spack/defaults/windows/packages.yaml

@@ -15,8 +15,8 @@
 # -------------------------------------------------------------------------
 packages:
   all:
+    compiler:
+    - msvc
     providers:
-      c : [msvc]
-      cxx: [msvc]
       mpi: [msmpi]
       gl: [wgl]

lib/spack/docs/basic_usage.rst

@@ -1761,24 +1761,19 @@ Verifying installations
 The ``spack verify`` command can be used to verify the validity of
 Spack-installed packages any time after installation.
 
-
-^^^^^^^^^^^^^^^^^^^^^^^^^
-``spack verify manifest``
-^^^^^^^^^^^^^^^^^^^^^^^^^
-
 At installation time, Spack creates a manifest of every file in the
 installation prefix. For links, Spack tracks the mode, ownership, and
 destination. For directories, Spack tracks the mode, and
 ownership. For files, Spack tracks the mode, ownership, modification
-time, hash, and size. The ``spack verify manifest`` command will check,
+time, hash, and size. The Spack verify command will check, for every
-for every file in each package, whether any of those attributes have
+file in each package, whether any of those attributes have changed. It
-changed. It will also check for newly added files or deleted files from
+will also check for newly added files or deleted files from the
-the installation prefix. Spack can either check all installed packages
+installation prefix. Spack can either check all installed packages
 using the `-a,--all` or accept specs listed on the command line to
 verify.
 
-The ``spack verify manifest`` command can also verify for individual files
+The ``spack verify`` command can also verify for individual files that
-that they haven't been altered since installation time. If the given file
+they haven't been altered since installation time. If the given file
 is not in a Spack installation prefix, Spack will report that it is
 not owned by any package. To check individual files instead of specs,
 use the ``-f,--files`` option.
@@ -1793,22 +1788,6 @@ check only local packages (as opposed to those used transparently from
 ``upstream`` spack instances) and the ``-j,--json`` option to output
 machine-readable json data for any errors.
 
-^^^^^^^^^^^^^^^^^^^^^^^^^^
-``spack verify libraries``
-^^^^^^^^^^^^^^^^^^^^^^^^^^
-
-The ``spack verify libraries`` command can be used to verify that packages
-do not have accidental system dependencies. This command scans the install
-prefixes of packages for executables and shared libraries, and resolves
-their needed libraries in their RPATHs. When needed libraries cannot be
-located, an error is reported. This typically indicates that a package
-was linked against a system library, instead of a library provided by
-a Spack package.
-
-This verification can also be enabled as a post-install hook by setting
-``config:shared_linking:missing_library_policy`` to ``error`` or ``warn``
-in :ref:`config.yaml <config-yaml>`.
-
 -----------------------
 Filesystem requirements
 -----------------------

lib/spack/docs/bootstrapping.rst

@@ -170,7 +170,7 @@ bootstrapping.
    To register the mirror on the platform where it's supposed to be used run the following command(s):
      % spack bootstrap add --trust local-sources /opt/bootstrap/metadata/sources
      % spack bootstrap add --trust local-binaries /opt/bootstrap/metadata/binaries
-     % spack buildcache update-index /opt/bootstrap/bootstrap_cache
+
 
 This command needs to be run on a machine with internet access and the resulting folder
 has to be moved over to the air-gapped system. Once the local sources are added using the

lib/spack/docs/build_systems/autotoolspackage.rst

@@ -272,9 +272,9 @@ often lists dependencies and the flags needed to locate them. The
 "environment variables" section lists environment variables that the
 build system uses to pass flags to the compiler and linker.
 
-^^^^^^^^^^^^^^^^^^^^^^^^^
+^^^^^^^^^^^^^^^^^^^^^^^^^^
-Adding flags to configure
+Addings flags to configure
-^^^^^^^^^^^^^^^^^^^^^^^^^
+^^^^^^^^^^^^^^^^^^^^^^^^^^
 
 For most of the flags you encounter, you will want a variant to
 optionally enable/disable them. You can then optionally pass these
@@ -285,7 +285,7 @@ function like so:
 
    def configure_args(self):
        args = []
-       ...
+
        if self.spec.satisfies("+mpi"):
            args.append("--enable-mpi")
        else:
@@ -299,10 +299,7 @@ Alternatively, you can use the :ref:`enable_or_disable  <autotools_enable_or_dis
 .. code-block:: python
 
    def configure_args(self):
-       args = []
+       return [self.enable_or_disable("mpi")]
-       ...
-       args.extend(self.enable_or_disable("mpi"))
-       return args
 
 
 Note that we are explicitly disabling MPI support if it is not
@@ -347,14 +344,7 @@ typically used to enable or disable some feature within the package.
        default=False,
        description="Memchecker support for debugging [degrades performance]"
    )
-   ...
+   config_args.extend(self.enable_or_disable("memchecker"))
-
-   def configure_args(self):
-       args = []
-       ...
-       args.extend(self.enable_or_disable("memchecker"))
-
-       return args
 
 In this example, specifying the variant ``+memchecker`` will generate
 the following configuration options:

lib/spack/docs/build_systems/custompackage.rst

@@ -56,13 +56,13 @@ If you look at the ``perl`` package, you'll see:
 
 .. code-block:: python
 
-   phases = ("configure", "build", "install")
+   phases = ["configure", "build", "install"]
 
 Similarly, ``cmake`` defines:
 
 .. code-block:: python
 
-   phases = ("bootstrap", "build", "install")
+   phases = ["bootstrap", "build", "install"]
 
 If we look at the ``cmake`` example, this tells Spack's ``PackageBase``
 class to run the ``bootstrap``, ``build``, and ``install`` functions

lib/spack/docs/conf.py

@@ -223,10 +223,6 @@ def setup(sphinx):
     ("py:class", "spack.compiler.CompilerCache"),
     # TypeVar that is not handled correctly
     ("py:class", "llnl.util.lang.T"),
-    ("py:class", "llnl.util.lang.KT"),
-    ("py:class", "llnl.util.lang.VT"),
-    ("py:obj", "llnl.util.lang.KT"),
-    ("py:obj", "llnl.util.lang.VT"),
 ]
 
 # The reST default role (used for this markup: `text`) to use for all documents.

lib/spack/docs/config_yaml.rst

@@ -125,8 +125,6 @@ are stored in ``$spack/var/spack/cache``.  These are stored indefinitely
 by default. Can be purged with :ref:`spack clean --downloads
 <cmd-spack-clean>`.
 
-.. _Misc Cache:
-
 --------------------
 ``misc_cache``
 --------------------
@@ -336,52 +334,3 @@ create a new alias called ``inst`` that will always call ``install -v``:
 
    aliases:
      inst: install -v
-
--------------------------------
-``concretization_cache:enable``
--------------------------------
-
-When set to ``true``, Spack will utilize a cache of solver outputs from
-successful concretization runs. When enabled, Spack will check the concretization
-cache prior to running the solver. If a previous request to solve a given
-problem is present in the cache, Spack will load the concrete specs and other
-solver data from the cache rather than running the solver. Specs not previously
-concretized will be added to the cache on a successful solve. The cache additionally
-holds solver statistics, so commands like ``spack solve`` will still return information
-about the run that produced a given solver result.
-
-This cache is a subcache of the :ref:`Misc Cache` and as such will be cleaned when the Misc
-Cache is cleaned.
-
-When ``false`` or ommitted, all concretization requests will be performed from scatch
-
-----------------------------
-``concretization_cache:url``
-----------------------------
-
-Path to the location where Spack will root the concretization cache. Currently this only supports
-paths on the local filesystem.
-
-Default location is under the :ref:`Misc Cache` at: ``$misc_cache/concretization``
-
-------------------------------------
-``concretization_cache:entry_limit``
-------------------------------------
-
-Sets a limit on the number of concretization results that Spack will cache. The limit is evaluated
-after each concretization run; if Spack has stored more results than the limit allows, the
-oldest concretization results are pruned until 10% of the limit has been removed.
-
-Setting this value to 0 disables the automatic pruning. It is expected users will be
-responsible for maintaining this cache.
-
------------------------------------
-``concretization_cache:size_limit``
------------------------------------
-
-Sets a limit on the size of the concretization cache in bytes. The limit is evaluated
-after each concretization run; if Spack has stored more results than the limit allows, the
-oldest concretization results are pruned until 10% of the limit has been removed.
-
-Setting this value to 0 disables the automatic pruning. It is expected users will be
-responsible for maintaining this cache.

lib/spack/docs/configuration.rst

@@ -14,7 +14,6 @@ case you want to skip directly to specific docs:
 * :ref:`compilers.yaml <compiler-config>`
 * :ref:`concretizer.yaml <concretizer-options>`
 * :ref:`config.yaml <config-yaml>`
-* :ref:`include.yaml <include-yaml>`
 * :ref:`mirrors.yaml <mirrors>`
 * :ref:`modules.yaml <modules>`
 * :ref:`packages.yaml <packages-config>`

lib/spack/docs/contribution_guide.rst

@@ -361,6 +361,7 @@ and the tags associated with the class of runners to build on.
     * ``.linux_neoverse_n1``
     * ``.linux_neoverse_v1``
     * ``.linux_neoverse_v2``
+    * ``.linux_power``
     * ``.linux_skylake``
     * ``.linux_x86_64``
     * ``.linux_x86_64_v4``

lib/spack/docs/developer_guide.rst

@@ -543,10 +543,10 @@ With either interpreter you can run a single command:
 
 .. code-block:: console
 
-   $ spack python -c 'from spack.concretize import concretize_one; concretize_one("python")'
+   $ spack python -c 'from spack.spec import Spec; Spec("python").concretized()'
    ...
 
-   $ spack python -i ipython -c 'from spack.concretize import concretize_one; concretize_one("python")'
+   $ spack python -i ipython -c 'from spack.spec import Spec; Spec("python").concretized()'
    Out[1]: ...
 
 or a file:

lib/spack/docs/environments.rst

@@ -112,19 +112,6 @@ the original but may concretize differently in the presence of different
 explicit or default configuration settings (e.g., a different version of
 Spack or for a different user account).
 
-Environments created from a manifest will copy any included configs
-from relative paths inside the environment. Relative paths from
-outside the environment will cause errors, and absolute paths will be
-kept absolute. For example, if ``spack.yaml`` includes:
-
-.. code-block:: yaml
-
-   spack:
-     include: [./config.yaml]
-
-then the created environment will have its own copy of the file
-``config.yaml`` copied from the location in the original environment.
-
 Create an environment from a ``spack.lock`` file using:
 
 .. code-block:: console
@@ -457,13 +444,6 @@ developed package in the environment are concretized to match the
 version (and other constraints) passed as the spec argument to the
 ``spack develop`` command.
 
-When working deep in the graph it is often desirable to have multiple specs marked
-as ``develop`` so you don't have to restage and/or do full rebuilds each time you
-call ``spack install``.  The ``--recursive`` flag can be used in these scenarios
-to ensure that all the dependents of the initial spec you provide are also marked
-as develop specs.  The ``--recursive`` flag requires a pre-concretized environment
-so the graph can be traversed from the supplied spec all the way to the root specs.
-
 For packages with ``git`` attributes, git branches, tags, and commits can
 also be used as valid concrete versions (see :ref:`version-specifier`).
 This means that for a package ``foo``, ``spack develop foo@git.main`` will clone
@@ -677,45 +657,24 @@ This configuration sets the default compiler for all packages to
 Included configurations
 ^^^^^^^^^^^^^^^^^^^^^^^
 
-Spack environments allow an ``include`` heading in their yaml schema.
+Spack environments allow an ``include`` heading in their yaml
-This heading pulls in external configuration files and applies them to
+schema. This heading pulls in external configuration files and applies
-the environment.
+them to the environment.
 
 .. code-block:: yaml
 
    spack:
      include:
-     - environment/relative/path/to/config.yaml
+     - relative/path/to/config.yaml
      - https://github.com/path/to/raw/config/compilers.yaml
      - /absolute/path/to/packages.yaml
-     - path: /path/to/$os/$target/environment
-       optional: true
-     - path: /path/to/os-specific/config-dir
-       when: os == "ventura"
-
-Included configuration files are required *unless* they are explicitly optional
-or the entry's condition evaluates to ``false``. Optional includes are specified
-with the ``optional`` clause and conditional with the ``when`` clause. (See
-:ref:`include-yaml` for more information on optional and conditional entries.)
-
-Files are listed using paths to individual files or directories containing them.
-Path entries may be absolute or relative to the environment or specified as 
-URLs. URLs to individual files need link to the **raw** form of the file's 
-contents (e.g., `GitHub
-<https://docs.github.com/en/repositories/working-with-files/using-files/viewing-and-understanding-files#viewing-or-copying-the-raw-file-content>`_ 
-or `GitLab
-<https://docs.gitlab.com/ee/api/repository_files.html#get-raw-file-from-repository>`_).
-Only the ``file``, ``ftp``, ``http`` and ``https`` protocols (or schemes) are
-supported. Spack-specific, environment and user path variables can be used.
-(See :ref:`config-file-variables` for more information.)
-
-.. warning::
-
-   Recursive includes are not currently processed in a breadth-first manner
-   so the value of a configuration option that is altered by multiple included
-   files may not be what you expect. This will be addressed in a future
-   update.
 
+Environments can include files or URLs. File paths can be relative or
+absolute. URLs include the path to the text for individual files or
+can be the path to a directory containing configuration files.
+Spack supports ``file``, ``http``, ``https`` and ``ftp`` protocols (or
+schemes). Spack-specific, environment and user path variables may be
+used in these paths. See :ref:`config-file-variables` for more information.
 
 ^^^^^^^^^^^^^^^^^^^^^^^^
 Configuration precedence

lib/spack/docs/frequently_asked_questions.rst

@@ -30,7 +30,7 @@ than always choosing the latest versions or default variants.
 
 .. note::
 
-    As a rule of thumb: requirements + constraints > strong preferences > reuse > preferences > defaults.
+    As a rule of thumb: requirements + constraints > reuse > preferences > defaults.
 
 The following set of criteria (from lowest to highest precedence) explain
 common cases where concretization output may seem surprising at first.
@@ -56,19 +56,7 @@ common cases where concretization output may seem surprising at first.
       concretizer:
         reuse: dependencies  # other options are 'true' and 'false'
 
-3. :ref:`Strong preferences <package-strong-preferences>` configured in ``packages.yaml``
+3. :ref:`Package requirements <package-requirements>` configured in ``packages.yaml``,
-   are higher priority than reuse, and can be used to strongly prefer a specific version
-   or variant, without erroring out if it's not possible. Strong preferences are specified
-   as follows:
-
-   .. code-block:: yaml
-
-      packages:
-        foo:
-          prefer:
-          - "@1.1: ~mpi"
-
-4. :ref:`Package requirements <package-requirements>` configured in ``packages.yaml``,
    and constraints from the command line as well as ``package.py`` files override all
    of the above. Requirements are specified as follows:
 
@@ -78,8 +66,6 @@ common cases where concretization output may seem surprising at first.
         foo:
           require:
           - "@1.2: +mpi"
-          conflicts:
-          - "@1.4"
 
 Requirements and constraints restrict the set of possible solutions, while reuse
 behavior and preferences influence what an optimal solution looks like.

lib/spack/docs/include_yaml.rst

@@ -1,51 +0,0 @@
-.. Copyright Spack Project Developers. See COPYRIGHT file for details.
-
-   SPDX-License-Identifier: (Apache-2.0 OR MIT)
-
-.. _include-yaml:
-
-===============================
-Include Settings (include.yaml)
-===============================
-
-Spack allows you to include configuration files through ``include.yaml``.
-Using the ``include:`` heading results in pulling in external configuration
-information to be used by any Spack command.
-
-Included configuration files are required *unless* they are explicitly optional
-or the entry's condition evaluates to ``false``. Optional includes are specified
-with the ``optional`` clause and conditional with the ``when`` clause. For
-example,
-
-.. code-block:: yaml
-
-   include:
-   - /path/to/a/required/config.yaml
-   - path: /path/to/$os/$target/config
-     optional: true
-   - path: /path/to/os-specific/config-dir
-     when: os == "ventura"
-
-shows all three. The first entry, ``/path/to/a/required/config.yaml``,
-indicates that included ``config.yaml`` file is required (so must exist).
-Use of ``optional: true`` for ``/path/to/$os/$target/config`` means
-the path is only included if it exists. The condition ``os == "ventura"``
-in the ``when`` clause for ``/path/to/os-specific/config-dir`` means the
-path is only included when the operating system (``os``) is ``ventura``.
-
-The same conditions and variables in `Spec List References 
-<https://spack.readthedocs.io/en/latest/environments.html#spec-list-references>`_
-can be used for conditional activation in the ``when`` clauses.
-
-Included files can be specified by path or by their parent directory.
-Paths may be absolute, relative (to the configuration file including the path), 
-or specified as URLs. Only the ``file``, ``ftp``, ``http`` and ``https`` protocols (or
-schemes) are supported. Spack-specific, environment and user path variables
-can be used. (See :ref:`config-file-variables` for more information.)
-
-.. warning::
-
-   Recursive includes are not currently processed in a breadth-first manner
-   so the value of a configuration option that is altered by multiple included
-   files may not be what you expect. This will be addressed in a future
-   update.

lib/spack/docs/index.rst

@@ -71,7 +71,6 @@ or refer to the full manual below.
 
    configuration
    config_yaml
-   include_yaml
    packages_yaml
    build_settings
    environments

lib/spack/docs/module_file_support.rst

@@ -456,13 +456,14 @@ For instance, the following config options,
        tcl:
          all:
            suffixes:
-             ^python@3: 'python{^python.version.up_to_2}'
+             ^python@3: 'python{^python.version}'
              ^openblas: 'openblas'
 
-will add a ``python3.12`` to module names of packages compiled with Python 3.12, and similarly for
+will add a ``python-3.12.1`` version string to any packages compiled with
-all specs depending on ``python@3``. This is useful to know which version of Python a set of Python
+Python matching the spec, ``python@3``. This is useful to know which
-extensions is associated with. Likewise, the ``openblas`` string is attached to any program that
+version of Python a set of Python extensions is associated with. Likewise, the
-has openblas in the spec, most likely via the ``+blas`` variant specification.
+``openblas`` string is attached to any program that has openblas in the spec,
+most likely via the ``+blas`` variant specification.
 
 The most heavyweight solution to module naming is to change the entire
 naming convention for module files. This uses the projections format

lib/spack/docs/packages_yaml.rst

@@ -486,8 +486,6 @@ present. For instance with a configuration like:
 
 you will use ``mvapich2~cuda %gcc`` as an ``mpi`` provider.
 
-.. _package-strong-preferences:
-
 ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
 Conflicts and strong preferences
 ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^

lib/spack/docs/pipelines.rst

@@ -330,7 +330,7 @@ that ``--tests`` is passed to ``spack ci rebuild`` as part of the
           - spack --version
           - cd ${SPACK_CONCRETE_ENV_DIR}
           - spack env activate --without-view .
-          - spack config add "config:install_tree:projections:${SPACK_JOB_SPEC_PKG_NAME}:'morepadding/{architecture.platform}-{architecture.target}/{name}-{version}-{hash}'"
+          - spack config add "config:install_tree:projections:${SPACK_JOB_SPEC_PKG_NAME}:'morepadding/{architecture}/{compiler.name}-{compiler.version}/{name}-{version}-{hash}'"
            - mkdir -p ${SPACK_ARTIFACTS_ROOT}/user_data
            - if [[ -r /mnt/key/intermediate_ci_signing_key.gpg ]]; then spack gpg trust /mnt/key/intermediate_ci_signing_key.gpg; fi
            - if [[ -r /mnt/key/spack_public_key.gpg ]]; then spack gpg trust /mnt/key/spack_public_key.gpg; fi
@@ -820,69 +820,6 @@ presence of a ``SPACK_CDASH_AUTH_TOKEN`` environment variable during the
 build group on CDash called "Release Testing" (that group will be created if
 it didn't already exist).
 
-.. _ci_artifacts:
-
-^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
-CI Artifacts Directory Layout
-^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
-
-When running the CI build using the command ``spack ci rebuild`` a number of directories are created for
-storing data generated during the CI job. The default root directory for artifacts is ``job_scratch_root``.
-This can be overridden by passing the argument ``--artifacts-root`` to the ``spack ci generate`` command
-or by setting the ``SPACK_ARTIFACTS_ROOT`` environment variable in the build job scripts.
-
-The top level directories under the artifact root are ``concrete_environment``, ``logs``, ``reproduction``,
-``tests``, and ``user_data``. Spack does not restrict what is written to any of these directories nor does
-it require user specified files be written to any specific directory.
-
-------------------------
-``concrete_environment``
-------------------------
-
-The directory ``concrete_environment`` is used to communicate the ci generate processed ``spack.yaml`` and
-the concrete ``spack.lock`` for the CI environment.
-
---------
-``logs``
---------
-
-The directory ``logs`` contains the spack build log, ``spack-build-out.txt``, and the spack build environment
-modification file, ``spack-build-mod-env.txt``. Additionally all files specified by the packages ``Builder``
-property ``archive_files`` are also copied here (ie. ``CMakeCache.txt`` in ``CMakeBuilder``).
-
-----------------
-``reproduction``
-----------------
-
-The directory ``reproduction`` is used to store the files needed by the ``spack reproduce-build`` command.
-This includes ``repro.json``, copies of all of the files in ``concrete_environment``, the concrete spec
-JSON file for the current spec being built, and all of the files written in the artifacts root directory.
-
-The ``repro.json`` file is not versioned and is only designed to work with the version of spack CI was run with.
-An example of what a ``repro.json`` may look like is here.
-
-.. code:: json
-
-  {
-    "job_name": "adios2@2.9.2 /feaevuj %gcc@11.4.0 arch=linux-ubuntu20.04-x86_64_v3 E4S ROCm External",
-    "job_spec_json": "adios2.json",
-    "ci_project_dir": "/builds/spack/spack"
-  }
-
----------
-``tests``
----------
-
-The directory ``tests`` is used to store output from running ``spack test <job spec>``. This may or may not have
-data in it depending on the package that was built and the availability of tests.
-
--------------
-``user_data``
--------------
-
-The directory ``user_data`` is used to store everything else that shouldn't be copied to the ``reproduction`` direcotory.
-Users may use this to store additional logs or metrics or other types of files generated by the build job.
-
 -------------------------------------
 Using a custom spack in your pipeline
 -------------------------------------

lib/spack/docs/requirements.txt

@@ -1,13 +1,13 @@
-sphinx==8.2.3
+sphinx==8.1.3
 sphinxcontrib-programoutput==0.18
 sphinx_design==0.6.1
 sphinx-rtd-theme==3.0.2
-python-levenshtein==0.27.1
+python-levenshtein==0.26.1
 docutils==0.21.2
 pygments==2.19.1
 urllib3==2.3.0
-pytest==8.3.5
+pytest==8.3.4
-isort==6.0.1
+isort==5.13.2
-black==25.1.0
+black==24.10.0
-flake8==7.1.2
+flake8==7.1.1
 mypy==1.11.1

lib/spack/env/aocc/clang

@@ -0,0 +1 @@
+../cc

lib/spack/env/aocc/clang++

@@ -0,0 +1 @@
+../cpp

lib/spack/env/aocc/flang

@@ -0,0 +1 @@
+../fc

lib/spack/env/arm/armclang

@@ -0,0 +1 @@
+../cc

lib/spack/env/arm/armclang++

@@ -0,0 +1 @@
+../cc

lib/spack/env/arm/armflang

@@ -0,0 +1 @@
+../cc

lib/spack/env/c++

@@ -0,0 +1 @@
+cc

lib/spack/env/c89

@@ -0,0 +1 @@
+cc

lib/spack/env/c99

@@ -0,0 +1 @@
+cc

lib/spack/env/case-insensitive/CC

@@ -0,0 +1 @@
+../cc

lib/spack/env/cc

@@ -36,9 +36,15 @@ readonly lsep=''
 # the script runs. They are set by routines in spack.build_environment
 # as part of the package installation process.
 readonly params="\
-SPACK_COMPILER_WRAPPER_PATH
+SPACK_ENV_PATH
 SPACK_DEBUG_LOG_DIR
 SPACK_DEBUG_LOG_ID
+SPACK_COMPILER_SPEC
+SPACK_CC_RPATH_ARG
+SPACK_CXX_RPATH_ARG
+SPACK_F77_RPATH_ARG
+SPACK_FC_RPATH_ARG
+SPACK_LINKER_ARG
 SPACK_SHORT_SPEC
 SPACK_SYSTEM_DIRS
 SPACK_MANAGED_DIRS"
@@ -339,9 +345,6 @@ case "$command" in
         ;;
     ld|ld.gold|ld.lld)
         mode=ld
-        if [ -z "$SPACK_CC_RPATH_ARG" ]; then
-            comp="CXX"
-        fi
         ;;
     *)
         die "Unknown compiler: $command"
@@ -396,12 +399,10 @@ fi
 #
 dtags_to_add="${SPACK_DTAGS_TO_ADD}"
 dtags_to_strip="${SPACK_DTAGS_TO_STRIP}"
-
+linker_arg="${SPACK_LINKER_ARG}"
-linker_arg="ERROR: LINKER ARG WAS NOT SET, MAYBE THE PACKAGE DOES NOT DEPEND ON ${comp}?"
-eval "linker_arg=\${SPACK_${comp}_LINKER_ARG:?${linker_arg}}"
 
 # Set up rpath variable according to language.
-rpath="ERROR: RPATH ARG WAS NOT SET, MAYBE THE PACKAGE DOES NOT DEPEND ON ${comp}?"
+rpath="ERROR: RPATH ARG WAS NOT SET"
 eval "rpath=\${SPACK_${comp}_RPATH_ARG:?${rpath}}"
 
 # Dump the mode and exit if the command is dump-mode.
@@ -410,6 +411,13 @@ if [ "$SPACK_TEST_COMMAND" = "dump-mode" ]; then
     exit
 fi
 
+# If, say, SPACK_CC is set but SPACK_FC is not, we want to know. Compilers do not
+# *have* to set up Fortran executables, so we need to tell the user when a build is
+# about to attempt to use them unsuccessfully.
+if [ -z "$command" ]; then
+    die "Compiler '$SPACK_COMPILER_SPEC' does not have a $language compiler configured."
+fi
+
 #
 # Filter '.' and Spack environment directories out of PATH so that
 # this script doesn't just call itself
@@ -418,7 +426,7 @@ new_dirs=""
 IFS=':'
 for dir in $PATH; do
     addpath=true
-    for spack_env_dir in $SPACK_COMPILER_WRAPPER_PATH; do
+    for spack_env_dir in $SPACK_ENV_PATH; do
         case "${dir%%/}" in
             "$spack_env_dir"|'.'|'')
                 addpath=false
@@ -779,17 +787,15 @@ case "$mode" in
             C)
                 extend spack_flags_list SPACK_ALWAYS_CFLAGS
                 extend spack_flags_list SPACK_CFLAGS
-                preextend flags_list SPACK_TARGET_ARGS_CC
                 ;;
             CXX)
                 extend spack_flags_list SPACK_ALWAYS_CXXFLAGS
                 extend spack_flags_list SPACK_CXXFLAGS
-                preextend flags_list SPACK_TARGET_ARGS_CXX
-                ;;
-            F)
-                preextend flags_list SPACK_TARGET_ARGS_FORTRAN
                 ;;
         esac
+
+        # prepend target args
+        preextend flags_list SPACK_TARGET_ARGS
         ;;
 esac
 

lib/spack/env/cce/case-insensitive/CC

@@ -0,0 +1 @@
+../../cc

lib/spack/env/cce/case-insensitive/crayCC

@@ -0,0 +1 @@
+../../cc

lib/spack/env/cce/cc

@@ -0,0 +1 @@
+../cc

lib/spack/env/cce/craycc

@@ -0,0 +1 @@
+../cc

lib/spack/env/cce/crayftn

@@ -0,0 +1 @@
+../cc

lib/spack/env/cce/ftn

@@ -0,0 +1 @@
+../cc

lib/spack/env/clang/clang

@@ -0,0 +1 @@
+../cc

lib/spack/env/clang/clang++

@@ -0,0 +1 @@
+../cc

lib/spack/env/clang/flang

@@ -0,0 +1 @@
+../cc

lib/spack/env/clang/gfortran

@@ -0,0 +1 @@
+../cc

lib/spack/env/cpp

@@ -0,0 +1 @@
+cc

lib/spack/env/f77

@@ -0,0 +1 @@
+cc

lib/spack/env/f90

@@ -0,0 +1 @@
+cc

lib/spack/env/f95

@@ -0,0 +1 @@
+cc

lib/spack/env/fc

@@ -0,0 +1 @@
+cc

lib/spack/env/fj/case-insensitive/FCC

@@ -0,0 +1 @@
+../../cc

lib/spack/env/fj/fcc

@@ -0,0 +1 @@
+../cc

lib/spack/env/fj/frt

@@ -0,0 +1 @@
+../cc

lib/spack/env/ftn

@@ -0,0 +1 @@
+cc

lib/spack/env/gcc/g++

@@ -0,0 +1 @@
+../cc

lib/spack/env/gcc/gcc

@@ -0,0 +1 @@
+../cc

lib/spack/env/gcc/gfortran

@@ -0,0 +1 @@
+../cc

lib/spack/env/intel/icc

@@ -0,0 +1 @@
+../cc

lib/spack/env/intel/icpc

@@ -0,0 +1 @@
+../cc

lib/spack/env/intel/ifort

@@ -0,0 +1 @@
+../cc

lib/spack/env/ld

@@ -0,0 +1 @@
+cc

lib/spack/env/ld.gold

@@ -0,0 +1 @@
+cc

lib/spack/env/ld.lld

@@ -0,0 +1 @@
+cc

lib/spack/env/nag/nagfor

@@ -0,0 +1 @@
+../cc

lib/spack/env/nvhpc/nvc

@@ -0,0 +1 @@
+../cc

lib/spack/env/nvhpc/nvc++

@@ -0,0 +1 @@
+../cc

lib/spack/env/nvhpc/nvfortran

@@ -0,0 +1 @@
+../cc

lib/spack/env/oneapi/dpcpp

@@ -0,0 +1 @@
+../cc

lib/spack/env/oneapi/icpx

@@ -0,0 +1 @@
+../cc

lib/spack/env/oneapi/icx

@@ -0,0 +1 @@
+../cc

lib/spack/env/oneapi/ifx

@@ -0,0 +1 @@
+../cc

lib/spack/env/pgi/pgc++

@@ -0,0 +1 @@
+../cc

lib/spack/env/pgi/pgcc

@@ -0,0 +1 @@
+../cc

lib/spack/env/pgi/pgfortran

@@ -0,0 +1 @@
+../cc

lib/spack/env/rocmcc/amdclang

@@ -0,0 +1 @@
+../cc

lib/spack/env/rocmcc/amdclang++

@@ -0,0 +1 @@
+../cpp

lib/spack/env/rocmcc/amdflang

@@ -0,0 +1 @@
+../fc

lib/spack/env/xl/xlc

@@ -0,0 +1 @@
+../cc

lib/spack/env/xl/xlc++

@@ -0,0 +1 @@
+../cc

lib/spack/env/xl/xlf

@@ -0,0 +1 @@
+../cc

lib/spack/env/xl/xlf90

@@ -0,0 +1 @@
+../cc

lib/spack/env/xl_r/xlc++_r

@@ -0,0 +1 @@
+../cc

lib/spack/env/xl_r/xlc_r

@@ -0,0 +1 @@
+../cc

lib/spack/env/xl_r/xlf90_r

@@ -0,0 +1 @@
+../cc

lib/spack/env/xl_r/xlf_r

@@ -0,0 +1 @@
+../cc

lib/spack/llnl/url.py

@@ -3,7 +3,7 @@
 # SPDX-License-Identifier: (Apache-2.0 OR MIT)
 """URL primitives that just require Python standard library."""
 import itertools
-import os
+import os.path
 import re
 from typing import Optional, Set, Tuple
 from urllib.parse import urlsplit, urlunsplit

lib/spack/llnl/util/filesystem.py

@@ -7,7 +7,6 @@
 import fnmatch
 import glob
 import hashlib
-import io
 import itertools
 import numbers
 import os
@@ -21,7 +20,6 @@
 from contextlib import contextmanager
 from itertools import accumulate
 from typing import (
-    IO,
     Callable,
     Deque,
     Dict,
@@ -77,6 +75,7 @@
     "install_tree",
     "is_exe",
     "join_path",
+    "last_modification_time_recursive",
     "library_extensions",
     "mkdirp",
     "partition_path",
@@ -670,7 +669,7 @@ def copy(src, dest, _permissions=False):
         _permissions (bool): for internal use only
 
     Raises:
-        OSError: if *src* does not match any files or directories
+        IOError: if *src* does not match any files or directories
         ValueError: if *src* matches multiple files but *dest* is
             not a directory
     """
@@ -681,7 +680,7 @@ def copy(src, dest, _permissions=False):
 
     files = glob.glob(src)
     if not files:
-        raise OSError("No such file or directory: '{0}'".format(src))
+        raise IOError("No such file or directory: '{0}'".format(src))
     if len(files) > 1 and not os.path.isdir(dest):
         raise ValueError(
             "'{0}' matches multiple files but '{1}' is not a directory".format(src, dest)
@@ -712,7 +711,7 @@ def install(src, dest):
         dest (str): the destination file or directory
 
     Raises:
-        OSError: if *src* does not match any files or directories
+        IOError: if *src* does not match any files or directories
         ValueError: if *src* matches multiple files but *dest* is
             not a directory
     """
@@ -750,7 +749,7 @@ def copy_tree(
         _permissions (bool): for internal use only
 
     Raises:
-        OSError: if *src* does not match any files or directories
+        IOError: if *src* does not match any files or directories
         ValueError: if *src* is a parent directory of *dest*
     """
     if _permissions:
@@ -764,7 +763,7 @@ def copy_tree(
 
     files = glob.glob(src)
     if not files:
-        raise OSError("No such file or directory: '{0}'".format(src))
+        raise IOError("No such file or directory: '{0}'".format(src))
 
     # For Windows hard-links and junctions, the source path must exist to make a symlink. Add
     # all symlinks to this list while traversing the tree, then when finished, make all
@@ -845,7 +844,7 @@ def install_tree(src, dest, symlinks=True, ignore=None):
         ignore (typing.Callable): function indicating which files to ignore
 
     Raises:
-        OSError: if *src* does not match any files or directories
+        IOError: if *src* does not match any files or directories
         ValueError: if *src* is a parent directory of *dest*
     """
     copy_tree(src, dest, symlinks=symlinks, ignore=ignore, _permissions=True)
@@ -1471,36 +1470,15 @@ def set_executable(path):
 
 
 @system_path_filter
-def recursive_mtime_greater_than(path: str, time: float) -> bool:
+def last_modification_time_recursive(path):
-    """Returns true if any file or dir recursively under `path` has mtime greater than `time`."""
+    path = os.path.abspath(path)
-    # use bfs order to increase likelihood of early return
+    times = [os.stat(path).st_mtime]
-    queue: Deque[str] = collections.deque([path])
+    times.extend(
-
+        os.lstat(os.path.join(root, name)).st_mtime
-    if os.stat(path).st_mtime > time:
+        for root, dirs, files in os.walk(path)
-        return True
+        for name in dirs + files
-
+    )
-    while queue:
+    return max(times)
-        current = queue.popleft()
-
-        try:
-            entries = os.scandir(current)
-        except OSError:
-            continue
-
-        with entries:
-            for entry in entries:
-                try:
-                    st = entry.stat(follow_symlinks=False)
-                except OSError:
-                    continue
-
-                if st.st_mtime > time:
-                    return True
-
-                if entry.is_dir(follow_symlinks=False):
-                    queue.append(entry.path)
-
-    return False
 
 
 @system_path_filter
@@ -1762,7 +1740,8 @@ def find(
 
 
 def _log_file_access_issue(e: OSError, path: str) -> None:
-    tty.debug(f"find must skip {path}: {e}")
+    errno_name = errno.errorcode.get(e.errno, "UNKNOWN")
+    tty.debug(f"find must skip {path}: {errno_name} {e}")
 
 
 def _file_id(s: os.stat_result) -> Tuple[int, int]:
@@ -2456,69 +2435,26 @@ class WindowsSimulatedRPath:
     and vis versa.
     """
 
-    def __init__(
+    def __init__(self, package, link_install_prefix=True):
-        self,
-        package,
-        base_modification_prefix: Optional[Union[str, pathlib.Path]] = None,
-        link_install_prefix: bool = True,
-    ):
         """
         Args:
             package (spack.package_base.PackageBase): Package requiring links
-            base_modification_prefix (str|pathlib.Path): Path representation indicating
-                the root directory in which to establish the simulated rpath, ie where the
-                symlinks that comprise the "rpath" behavior will be installed.
-
-                Note: This is a mutually exclusive option with `link_install_prefix` using
-                both is an error.
-
-                Default: None
             link_install_prefix (bool): Link against package's own install or stage root.
                 Packages that run their own executables during build and require rpaths to
-                the build directory during build time require this option.
+                the build directory during build time require this option. Default: install
-
-                Default: install
                 root
-
-                Note: This is a mutually exclusive option with `base_modification_prefix`, using
-                both is an error.
         """
         self.pkg = package
-        self._addl_rpaths: set[str] = set()
+        self._addl_rpaths = set()
-        if link_install_prefix and base_modification_prefix:
-            raise RuntimeError(
-                "Invalid combination of arguments given to WindowsSimulated RPath.\n"
-                "Select either `link_install_prefix` to create an install prefix rpath"
-                " or specify a `base_modification_prefix` for any other link type. "
-                "Specifying both arguments is invalid."
-            )
-        if not (link_install_prefix or base_modification_prefix):
-            raise RuntimeError(
-                "Insufficient arguments given to WindowsSimulatedRpath.\n"
-                "WindowsSimulatedRPath requires one of link_install_prefix"
-                " or base_modification_prefix to be specified."
-                " Neither was provided."
-            )
-
         self.link_install_prefix = link_install_prefix
-        if base_modification_prefix:
+        self._additional_library_dependents = set()
-            self.base_modification_prefix = pathlib.Path(base_modification_prefix)
-        else:
-            self.base_modification_prefix = pathlib.Path(self.pkg.prefix)
-        self._additional_library_dependents: set[pathlib.Path] = set()
-        if not self.link_install_prefix:
-            tty.debug(f"Generating rpath for non install context: {base_modification_prefix}")
 
     @property
     def library_dependents(self):
         """
         Set of directories where package binaries/libraries are located.
         """
-        base_pths = set()
+        return set([pathlib.Path(self.pkg.prefix.bin)]) | self._additional_library_dependents
-        if self.link_install_prefix:
-            base_pths.add(pathlib.Path(self.pkg.prefix.bin))
-        base_pths |= self._additional_library_dependents
-        return base_pths
 
     def add_library_dependent(self, *dest):
         """
@@ -2534,12 +2470,6 @@ def add_library_dependent(self, *dest):
                 new_pth = pathlib.Path(pth).parent
             else:
                 new_pth = pathlib.Path(pth)
-            path_is_in_prefix = new_pth.is_relative_to(self.base_modification_prefix)
-            if not path_is_in_prefix:
-                raise RuntimeError(
-                    f"Attempting to generate rpath symlink out of rpath context:\
-{str(self.base_modification_prefix)}"
-                )
             self._additional_library_dependents.add(new_pth)
 
     @property
@@ -2628,33 +2558,6 @@ def establish_link(self):
                 self._link(library, lib_dir)
 
 
-def make_package_test_rpath(pkg, test_dir: Union[str, pathlib.Path]):
-    """Establishes a temp Windows simulated rpath for the pkg in the testing directory
-    so an executable can test the libraries/executables with proper access
-    to dependent dlls
-
-    Note: this is a no-op on all other platforms besides Windows
-
-    Args:
-        pkg (spack.package_base.PackageBase): the package for which the rpath should be computed
-        test_dir: the testing directory in which we should construct an rpath
-    """
-    # link_install_prefix as false ensures we're not linking into the install prefix
-    mini_rpath = WindowsSimulatedRPath(pkg, link_install_prefix=False)
-    # add the testing directory as a location to install rpath symlinks
-    mini_rpath.add_library_dependent(test_dir)
-
-    # check for whether build_directory is available, if not
-    # assume the stage root is the build dir
-    build_dir_attr = getattr(pkg, "build_directory", None)
-    build_directory = build_dir_attr if build_dir_attr else pkg.stage.path
-    # add the build dir & build dir bin
-    mini_rpath.add_rpath(os.path.join(build_directory, "bin"))
-    mini_rpath.add_rpath(os.path.join(build_directory))
-    # construct rpath
-    mini_rpath.establish_link()
-
-
 @system_path_filter
 @memoized
 def can_access_dir(path):
@@ -2883,20 +2786,6 @@ def keep_modification_time(*filenames):
             os.utime(f, (os.path.getatime(f), mtime))
 
 
-@contextmanager
-def temporary_file_position(stream):
-    orig_pos = stream.tell()
-    yield
-    stream.seek(orig_pos)
-
-
-@contextmanager
-def current_file_position(stream: IO[str], loc: int, relative_to=io.SEEK_CUR):
-    with temporary_file_position(stream):
-        stream.seek(loc, relative_to)
-        yield
-
-
 @contextmanager
 def temporary_dir(
     suffix: Optional[str] = None, prefix: Optional[str] = None, dir: Optional[str] = None

lib/spack/llnl/util/lang.py

@@ -11,11 +11,10 @@
 import re
 import sys
 import traceback
-import types
 import typing
 import warnings
 from datetime import datetime, timedelta
-from typing import Callable, Dict, Iterable, List, Mapping, Optional, Tuple, TypeVar
+from typing import Callable, Dict, Iterable, List, Tuple, TypeVar
 
 # Ignore emacs backups when listing modules
 ignore_modules = r"^\.#|~$"
@@ -73,7 +72,7 @@ def index_by(objects, *funcs):
     if isinstance(f, str):
         f = lambda x: getattr(x, funcs[0])
     elif isinstance(f, tuple):
-        f = lambda x: tuple(getattr(x, p, None) for p in funcs[0])
+        f = lambda x: tuple(getattr(x, p) for p in funcs[0])
 
     result = {}
     for o in objects:
@@ -708,24 +707,14 @@ def __init__(self, wrapped_object):
 
 
 class Singleton:
-    """Wrapper for lazily initialized singleton objects."""
+    """Simple wrapper for lazily initialized singleton objects."""
 
-    def __init__(self, factory: Callable[[], object]):
+    def __init__(self, factory):
         """Create a new singleton to be inited with the factory function.
 
-        Most factories will simply create the object to be initialized and
-        return it.
-
-        In some cases, e.g. when bootstrapping some global state, the singleton
-        may need to be initialized incrementally. If the factory returns a generator
-        instead of a regular object, the singleton will assign each result yielded by
-        the generator to the singleton instance. This allows methods called by
-        the factory in later stages to refer back to the singleton.
-
         Args:
-            factory (function): function taking no arguments that creates the
+            factory (function): function taking no arguments that
-                singleton instance.
+                creates the singleton instance.
-
         """
         self.factory = factory
         self._instance = None
@@ -733,16 +722,7 @@ def __init__(self, factory: Callable[[], object]):
     @property
     def instance(self):
         if self._instance is None:
-            instance = self.factory()
+            self._instance = self.factory()
-
-            if isinstance(instance, types.GeneratorType):
-                # if it's a generator, assign every value
-                for value in instance:
-                    self._instance = value
-            else:
-                # if not, just assign the result like a normal singleton
-                self._instance = instance
-
         return self._instance
 
     def __getattr__(self, name):
@@ -1016,8 +996,11 @@ def _receive_forwarded(self, context: str, exc: Exception, tb: List[str]):
     def grouped_message(self, with_tracebacks: bool = True) -> str:
         """Print out an error message coalescing all the forwarded errors."""
         each_exception_message = [
-            "\n\t{0} raised {1}: {2}\n{3}".format(
+            "{0} raised {1}: {2}{3}".format(
-                context, exc.__class__.__name__, exc, f"\n{''.join(tb)}" if with_tracebacks else ""
+                context,
+                exc.__class__.__name__,
+                exc,
+                "\n{0}".format("".join(tb)) if with_tracebacks else "",
             )
             for context, exc, tb in self.exceptions
         ]
@@ -1097,88 +1080,3 @@ def __set__(self, instance, value):
 
     def factory(self, instance, owner):
         raise NotImplementedError("must be implemented by derived classes")
-
-
-KT = TypeVar("KT")
-VT = TypeVar("VT")
-
-
-class PriorityOrderedMapping(Mapping[KT, VT]):
-    """Mapping that iterates over key according to an integer priority. If the priority is
-    the same for two keys, insertion order is what matters.
-
-    The priority is set when the key/value pair is added. If not set, the highest current priority
-    is used.
-    """
-
-    _data: Dict[KT, VT]
-    _priorities: List[Tuple[int, KT]]
-
-    def __init__(self) -> None:
-        self._data = {}
-        # Tuple of (priority, key)
-        self._priorities = []
-
-    def __getitem__(self, key: KT) -> VT:
-        return self._data[key]
-
-    def __len__(self) -> int:
-        return len(self._data)
-
-    def __iter__(self):
-        yield from (key for _, key in self._priorities)
-
-    def __reversed__(self):
-        yield from (key for _, key in reversed(self._priorities))
-
-    def reversed_keys(self):
-        """Iterates over keys from the highest priority, to the lowest."""
-        return reversed(self)
-
-    def reversed_values(self):
-        """Iterates over values from the highest priority, to the lowest."""
-        yield from (self._data[key] for _, key in reversed(self._priorities))
-
-    def _highest_priority(self) -> int:
-        if not self._priorities:
-            return 0
-        result, _ = self._priorities[-1]
-        return result
-
-    def add(self, key: KT, *, value: VT, priority: Optional[int] = None) -> None:
-        """Adds a key/value pair to the mapping, with a specific priority.
-
-        If the priority is None, then it is assumed to be the highest priority value currently
-        in the container.
-
-        Raises:
-              ValueError: when the same priority is already in the mapping
-        """
-        if priority is None:
-            priority = self._highest_priority()
-
-        if key in self._data:
-            self.remove(key)
-
-        self._priorities.append((priority, key))
-        # We rely on sort being stable
-        self._priorities.sort(key=lambda x: x[0])
-        self._data[key] = value
-        assert len(self._data) == len(self._priorities)
-
-    def remove(self, key: KT) -> VT:
-        """Removes a key from the mapping.
-
-        Returns:
-            The value associated with the key being removed
-
-        Raises:
-            KeyError: if the key is not in the mapping
-        """
-        if key not in self._data:
-            raise KeyError(f"cannot find {key}")
-
-        popped_item = self._data.pop(key)
-        self._priorities = [(p, k) for p, k in self._priorities if k != key]
-        assert len(self._data) == len(self._priorities)
-        return popped_item

lib/spack/llnl/util/link_tree.py

@@ -41,16 +41,6 @@ def __init__(self, dst, src_a=None, src_b=None):
         self.src_a = src_a
         self.src_b = src_b
 
-    def __repr__(self) -> str:
-        return f"MergeConflict(dst={self.dst!r}, src_a={self.src_a!r}, src_b={self.src_b!r})"
-
-
-def _samefile(a: str, b: str):
-    try:
-        return os.path.samefile(a, b)
-    except OSError:
-        return False
-
 
 class SourceMergeVisitor(BaseDirectoryVisitor):
     """
@@ -60,14 +50,9 @@ class SourceMergeVisitor(BaseDirectoryVisitor):
     - A list of merge conflicts in dst/
     """
 
-    def __init__(
+    def __init__(self, ignore: Optional[Callable[[str], bool]] = None):
-        self, ignore: Optional[Callable[[str], bool]] = None, normalize_paths: bool = False
-    ):
         self.ignore = ignore if ignore is not None else lambda f: False
 
-        # On case-insensitive filesystems, normalize paths to detect duplications
-        self.normalize_paths = normalize_paths
-
         # When mapping <src root> to <dst root>/<projection>, we need to prepend the <projection>
         # bit to the relative path in the destination dir.
         self.projection: str = ""
@@ -86,88 +71,10 @@ def __init__(
         # and can run mkdir in order.
         self.directories: Dict[str, Tuple[str, str]] = {}
 
-        # If the visitor is configured to normalize paths, keep a map of
-        # normalized path to: original path, root directory + relative path
-        self._directories_normalized: Dict[str, Tuple[str, str, str]] = {}
-
         # Files to link. Maps dst_rel to (src_root, src_rel). This is an ordered dict, where files
         # are guaranteed to be grouped by src_root in the order they were visited.
         self.files: Dict[str, Tuple[str, str]] = {}
 
-        # If the visitor is configured to normalize paths, keep a map of
-        # normalized path to: original path, root directory + relative path
-        self._files_normalized: Dict[str, Tuple[str, str, str]] = {}
-
-    def _in_directories(self, proj_rel_path: str) -> bool:
-        """
-        Check if a path is already in the directory list
-        """
-        if self.normalize_paths:
-            return proj_rel_path.lower() in self._directories_normalized
-        else:
-            return proj_rel_path in self.directories
-
-    def _directory(self, proj_rel_path: str) -> Tuple[str, str, str]:
-        """
-        Get the directory that is mapped to a path
-        """
-        if self.normalize_paths:
-            return self._directories_normalized[proj_rel_path.lower()]
-        else:
-            return (proj_rel_path, *self.directories[proj_rel_path])
-
-    def _del_directory(self, proj_rel_path: str):
-        """
-        Remove a directory from the list of directories
-        """
-        del self.directories[proj_rel_path]
-        if self.normalize_paths:
-            del self._directories_normalized[proj_rel_path.lower()]
-
-    def _add_directory(self, proj_rel_path: str, root: str, rel_path: str):
-        """
-        Add a directory to the list of directories.
-        Also stores the normalized version for later lookups
-        """
-        self.directories[proj_rel_path] = (root, rel_path)
-        if self.normalize_paths:
-            self._directories_normalized[proj_rel_path.lower()] = (proj_rel_path, root, rel_path)
-
-    def _in_files(self, proj_rel_path: str) -> bool:
-        """
-        Check if a path is already in the files list
-        """
-        if self.normalize_paths:
-            return proj_rel_path.lower() in self._files_normalized
-        else:
-            return proj_rel_path in self.files
-
-    def _file(self, proj_rel_path: str) -> Tuple[str, str, str]:
-        """
-        Get the file that is mapped to a path
-        """
-        if self.normalize_paths:
-            return self._files_normalized[proj_rel_path.lower()]
-        else:
-            return (proj_rel_path, *self.files[proj_rel_path])
-
-    def _del_file(self, proj_rel_path: str):
-        """
-        Remove a file from the list of files
-        """
-        del self.files[proj_rel_path]
-        if self.normalize_paths:
-            del self._files_normalized[proj_rel_path.lower()]
-
-    def _add_file(self, proj_rel_path: str, root: str, rel_path: str):
-        """
-        Add a file to the list of files
-        Also stores the normalized version for later lookups
-        """
-        self.files[proj_rel_path] = (root, rel_path)
-        if self.normalize_paths:
-            self._files_normalized[proj_rel_path.lower()] = (proj_rel_path, root, rel_path)
-
     def before_visit_dir(self, root: str, rel_path: str, depth: int) -> bool:
         """
         Register a directory if dst / rel_path is not blocked by a file or ignored.
@@ -177,28 +84,23 @@ def before_visit_dir(self, root: str, rel_path: str, depth: int) -> bool:
         if self.ignore(rel_path):
             # Don't recurse when dir is ignored.
             return False
-        elif self._in_files(proj_rel_path):
+        elif proj_rel_path in self.files:
-            # A file-dir conflict is fatal except if they're the same file (symlinked dir).
+            # Can't create a dir where a file is.
-            src_a = os.path.join(*self._file(proj_rel_path))
+            src_a_root, src_a_relpath = self.files[proj_rel_path]
-            src_b = os.path.join(root, rel_path)
-
-            if not _samefile(src_a, src_b):
             self.fatal_conflicts.append(
-                    MergeConflict(dst=proj_rel_path, src_a=src_a, src_b=src_b)
+                MergeConflict(
+                    dst=proj_rel_path,
+                    src_a=os.path.join(src_a_root, src_a_relpath),
+                    src_b=os.path.join(root, rel_path),
+                )
             )
             return False
-
+        elif proj_rel_path in self.directories:
-            # Remove the link in favor of the dir.
-            existing_proj_rel_path, _, _ = self._file(proj_rel_path)
-            self._del_file(existing_proj_rel_path)
-            self._add_directory(proj_rel_path, root, rel_path)
-            return True
-        elif self._in_directories(proj_rel_path):
             # No new directory, carry on.
             return True
         else:
             # Register new directory.
-            self._add_directory(proj_rel_path, root, rel_path)
+            self.directories[proj_rel_path] = (root, rel_path)
             return True
 
     def before_visit_symlinked_dir(self, root: str, rel_path: str, depth: int) -> bool:
@@ -230,7 +132,7 @@ def before_visit_symlinked_dir(self, root: str, rel_path: str, depth: int) -> bo
         if handle_as_dir:
             return self.before_visit_dir(root, rel_path, depth)
 
-        self.visit_file(root, rel_path, depth, symlink=True)
+        self.visit_file(root, rel_path, depth)
         return False
 
     def visit_file(self, root: str, rel_path: str, depth: int, *, symlink: bool = False) -> None:
@@ -238,23 +140,30 @@ def visit_file(self, root: str, rel_path: str, depth: int, *, symlink: bool = Fa
 
         if self.ignore(rel_path):
             pass
-        elif self._in_directories(proj_rel_path):
+        elif proj_rel_path in self.directories:
-            # Can't create a file where a dir is, unless they are the same file (symlinked dir),
+            # Can't create a file where a dir is; fatal error
-            # in which case we simply drop the symlink in favor of the actual dir.
-            src_a = os.path.join(*self._directory(proj_rel_path))
-            src_b = os.path.join(root, rel_path)
-            if not symlink or not _samefile(src_a, src_b):
             self.fatal_conflicts.append(
-                    MergeConflict(dst=proj_rel_path, src_a=src_a, src_b=src_b)
+                MergeConflict(
+                    dst=proj_rel_path,
+                    src_a=os.path.join(*self.directories[proj_rel_path]),
+                    src_b=os.path.join(root, rel_path),
                 )
-        elif self._in_files(proj_rel_path):
+            )
+        elif proj_rel_path in self.files:
             # When two files project to the same path, they conflict iff they are distinct.
             # If they are the same (i.e. one links to the other), register regular files rather
             # than symlinks. The reason is that in copy-type views, we need a copy of the actual
             # file, not the symlink.
-            src_a = os.path.join(*self._file(proj_rel_path))
+
+            src_a = os.path.join(*self.files[proj_rel_path])
             src_b = os.path.join(root, rel_path)
-            if not _samefile(src_a, src_b):
+
+            try:
+                samefile = os.path.samefile(src_a, src_b)
+            except OSError:
+                samefile = False
+
+            if not samefile:
                 # Distinct files produce a conflict.
                 self.file_conflicts.append(
                     MergeConflict(dst=proj_rel_path, src_a=src_a, src_b=src_b)
@@ -264,12 +173,12 @@ def visit_file(self, root: str, rel_path: str, depth: int, *, symlink: bool = Fa
             if not symlink:
                 # Remove the link in favor of the actual file. The del is necessary to maintain the
                 # order of the files dict, which is grouped by root.
-                existing_proj_rel_path, _, _ = self._file(proj_rel_path)
+                del self.files[proj_rel_path]
-                self._del_file(existing_proj_rel_path)
+                self.files[proj_rel_path] = (root, rel_path)
-                self._add_file(proj_rel_path, root, rel_path)
+
         else:
             # Otherwise register this file to be linked.
-            self._add_file(proj_rel_path, root, rel_path)
+            self.files[proj_rel_path] = (root, rel_path)
 
     def visit_symlinked_file(self, root: str, rel_path: str, depth: int) -> None:
         # Treat symlinked files as ordinary files (without "dereferencing")
@@ -288,11 +197,11 @@ def set_projection(self, projection: str) -> None:
         path = ""
         for part in self.projection.split(os.sep):
             path = os.path.join(path, part)
-            if not self._in_files(path):
+            if path not in self.files:
-                self._add_directory(path, "<projection>", path)
+                self.directories[path] = ("<projection>", path)
             else:
                 # Can't create a dir where a file is.
-                _, src_a_root, src_a_relpath = self._file(path)
+                src_a_root, src_a_relpath = self.files[path]
                 self.fatal_conflicts.append(
                     MergeConflict(
                         dst=path,
@@ -318,8 +227,8 @@ def __init__(self, source_merge_visitor: SourceMergeVisitor):
     def before_visit_dir(self, root: str, rel_path: str, depth: int) -> bool:
         # If destination dir is a file in a src dir, add a conflict,
         # and don't traverse deeper
-        if self.src._in_files(rel_path):
+        if rel_path in self.src.files:
-            _, src_a_root, src_a_relpath = self.src._file(rel_path)
+            src_a_root, src_a_relpath = self.src.files[rel_path]
             self.src.fatal_conflicts.append(
                 MergeConflict(
                     rel_path, os.path.join(src_a_root, src_a_relpath), os.path.join(root, rel_path)
@@ -329,9 +238,8 @@ def before_visit_dir(self, root: str, rel_path: str, depth: int) -> bool:
 
         # If destination dir was also a src dir, remove the mkdir
         # action, and traverse deeper.
-        if self.src._in_directories(rel_path):
+        if rel_path in self.src.directories:
-            existing_proj_rel_path, _, _ = self.src._directory(rel_path)
+            del self.src.directories[rel_path]
-            self.src._del_directory(existing_proj_rel_path)
             return True
 
         # If the destination dir does not appear in the src dir,
@@ -344,24 +252,38 @@ def before_visit_symlinked_dir(self, root: str, rel_path: str, depth: int) -> bo
         be seen as files; we should not accidentally merge
         source dir with a symlinked dest dir.
         """
-
+        # Always conflict
-        self.visit_file(root, rel_path, depth)
+        if rel_path in self.src.directories:
-
+            src_a_root, src_a_relpath = self.src.directories[rel_path]
-        # Never descend into symlinked target dirs.
-        return False
-
-    def visit_file(self, root: str, rel_path: str, depth: int) -> None:
-        # Can't merge a file if target already exists
-        if self.src._in_directories(rel_path):
-            _, src_a_root, src_a_relpath = self.src._directory(rel_path)
             self.src.fatal_conflicts.append(
                 MergeConflict(
                     rel_path, os.path.join(src_a_root, src_a_relpath), os.path.join(root, rel_path)
                 )
             )
 
-        elif self.src._in_files(rel_path):
+        if rel_path in self.src.files:
-            _, src_a_root, src_a_relpath = self.src._file(rel_path)
+            src_a_root, src_a_relpath = self.src.files[rel_path]
+            self.src.fatal_conflicts.append(
+                MergeConflict(
+                    rel_path, os.path.join(src_a_root, src_a_relpath), os.path.join(root, rel_path)
+                )
+            )
+
+        # Never descend into symlinked target dirs.
+        return False
+
+    def visit_file(self, root: str, rel_path: str, depth: int) -> None:
+        # Can't merge a file if target already exists
+        if rel_path in self.src.directories:
+            src_a_root, src_a_relpath = self.src.directories[rel_path]
+            self.src.fatal_conflicts.append(
+                MergeConflict(
+                    rel_path, os.path.join(src_a_root, src_a_relpath), os.path.join(root, rel_path)
+                )
+            )
+
+        elif rel_path in self.src.files:
+            src_a_root, src_a_relpath = self.src.files[rel_path]
             self.src.fatal_conflicts.append(
                 MergeConflict(
                     rel_path, os.path.join(src_a_root, src_a_relpath), os.path.join(root, rel_path)
@@ -386,7 +308,7 @@ class LinkTree:
 
     def __init__(self, source_root):
         if not os.path.exists(source_root):
-            raise OSError("No such file or directory: '%s'", source_root)
+            raise IOError("No such file or directory: '%s'", source_root)
 
         self._root = source_root
 

lib/spack/llnl/util/lock.py

@@ -269,7 +269,7 @@ def __init__(
 
     @staticmethod
     def _poll_interval_generator(
-        _wait_times: Optional[Tuple[float, float, float]] = None,
+        _wait_times: Optional[Tuple[float, float, float]] = None
     ) -> Generator[float, None, None]:
         """This implements a backoff scheme for polling a contended resource
         by suggesting a succession of wait times between polls.
@@ -391,7 +391,7 @@ def _poll_lock(self, op: int) -> bool:
 
             return True
 
-        except OSError as e:
+        except IOError as e:
             # EAGAIN and EACCES == locked by another process (so try again)
             if e.errno not in (errno.EAGAIN, errno.EACCES):
                 raise

lib/spack/llnl/util/tty/log.py

@@ -2,7 +2,8 @@
 #
 # SPDX-License-Identifier: (Apache-2.0 OR MIT)
 
-"""Utility classes for logging the output of blocks of code."""
+"""Utility classes for logging the output of blocks of code.
+"""
 import atexit
 import ctypes
 import errno
@@ -343,6 +344,26 @@ def close(self):
             self.file.close()
 
 
+@contextmanager
+def replace_environment(env):
+    """Replace the current environment (`os.environ`) with `env`.
+
+    If `env` is empty (or None), this unsets all current environment
+    variables.
+    """
+    env = env or {}
+    old_env = os.environ.copy()
+    try:
+        os.environ.clear()
+        for name, val in env.items():
+            os.environ[name] = val
+        yield
+    finally:
+        os.environ.clear()
+        for name, val in old_env.items():
+            os.environ[name] = val
+
+
 def log_output(*args, **kwargs):
     """Context manager that logs its output to a file.
 
@@ -426,6 +447,7 @@ def __init__(
         self.echo = echo
         self.debug = debug
         self.buffer = buffer
+        self.env = env  # the environment to use for _writer_daemon
         self.filter_fn = filter_fn
 
         self._active = False  # used to prevent re-entry
@@ -497,6 +519,7 @@ def __enter__(self):
                 # just don't forward input if this fails
                 pass
 
+            with replace_environment(self.env):
                 self.process = multiprocessing.Process(
                     target=_writer_daemon,
                     args=(
@@ -706,7 +729,10 @@ class winlog:
     Does not support the use of 'v' toggling as nixlog does.
     """
 
-    def __init__(self, file_like=None, echo=False, debug=0, buffer=False, filter_fn=None):
+    def __init__(
+        self, file_like=None, echo=False, debug=0, buffer=False, env=None, filter_fn=None
+    ):
+        self.env = env
         self.debug = debug
         self.echo = echo
         self.logfile = file_like
@@ -763,6 +789,7 @@ def background_reader(reader, echo_writer, _kill):
                     reader.close()
 
             self._active = True
+            with replace_environment(self.env):
                 self._thread = Thread(
                     target=background_reader, args=(self.reader, self.echo_writer, self._kill)
                 )
@@ -891,7 +918,7 @@ def _writer_daemon(
                         try:
                             if stdin_file.read(1) == "v":
                                 echo = not echo
-                        except OSError as e:
+                        except IOError as e:
                             # If SIGTTIN is ignored, the system gives EIO
                             # to let the caller know the read failed b/c it
                             # was in the bg. Ignore that too.
@@ -986,7 +1013,7 @@ def wrapped(*args, **kwargs):
         while True:
             try:
                 return function(*args, **kwargs)
-            except OSError as e:
+            except IOError as e:
                 if e.errno == errno.EINTR:
                     continue
                 raise

lib/spack/spack/__init__.py

@@ -10,21 +10,9 @@
 import spack.util.git
 
 #: PEP440 canonical <major>.<minor>.<micro>.<devN> string
-__version__ = "1.0.0.dev0"
+__version__ = "0.24.0.dev0"
 spack_version = __version__
 
-#: The current Package API version implemented by this version of Spack. The Package API defines
-#: the Python interface for packages as well as the layout of package repositories. The minor
-#: version is incremented when the package API is extended in a backwards-compatible way. The major
-#: version is incremented upon breaking changes. This version is changed independently from the
-#: Spack version.
-package_api_version = (1, 0)
-
-#: The minimum Package API version that this version of Spack is compatible with. This should
-#: always be a tuple of the form ``(major, 0)``, since compatibility with vX.Y implies
-#: compatibility with vX.0.
-min_package_api_version = (1, 0)
-
 
 def __try_int(v):
     try:
@@ -91,6 +79,4 @@ def get_short_version() -> str:
     "get_version",
     "get_spack_commit",
     "get_short_version",
-    "package_api_version",
-    "min_package_api_version",
 ]

lib/spack/spack/aliases.py

@@ -1,20 +0,0 @@
-# Copyright Spack Project Developers. See COPYRIGHT file for details.
-#
-# SPDX-License-Identifier: (Apache-2.0 OR MIT)
-"""Alias names to convert legacy compilers to builtin packages and vice-versa"""
-
-BUILTIN_TO_LEGACY_COMPILER = {
-    "llvm": "clang",
-    "intel-oneapi-compilers": "oneapi",
-    "llvm-amdgpu": "rocmcc",
-    "intel-oneapi-compiler-classic": "intel",
-    "acfl": "arm",
-}
-
-LEGACY_COMPILER_TO_BUILTIN = {
-    "clang": "llvm",
-    "oneapi": "intel-oneapi-compilers",
-    "rocmcc": "llvm-amdgpu",
-    "intel": "intel-oneapi-compiler-classic",
-    "arm": "acfl",
-}