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163 Commits

Author SHA1 Message Date
Gregory Becker
382a5ab169 update test to match 2025-02-18 14:11:32 -08:00
Gregory Becker
77957e682a ci: print spec in each rebuild job 2025-02-12 14:53:52 -08:00
Paul R. C. Kent
46da7952d3 llvm: add v19.1.6 (#48162) 2025-01-09 13:51:46 -08:00
Adam J. Stewart
72783bcb0a py-keras: add v3.8.0, remove optional deps (#48461) 2025-01-09 09:16:57 -08:00
Olivier Cessenat
f4d2ff0068 ocaml: compile versions before 4.8.0 again (#48470) 2025-01-09 09:15:12 -08:00
Adam J. Stewart
a2b7fee3fe py-timm: add v1.0.12 (#48474) 2025-01-09 09:11:08 -08:00
Mikael Simberg
2ebf2df421 mold: Add 2.36.0 (#48483) 2025-01-09 13:20:40 +01:00
dependabot[bot]
e725aa527e build(deps): bump codecov/codecov-action from 5.0.3 to 5.1.2 (#48200)
Bumps [codecov/codecov-action](https://github.com/codecov/codecov-action) from 5.0.3 to 5.1.2.
- [Release notes](https://github.com/codecov/codecov-action/releases)
- [Changelog](https://github.com/codecov/codecov-action/blob/main/CHANGELOG.md)
- [Commits](05f5a9cfad...1e68e06f1d)

---
updated-dependencies:
- dependency-name: codecov/codecov-action
  dependency-type: direct:production
  update-type: version-update:semver-minor
...

Signed-off-by: dependabot[bot] <support@github.com>
Co-authored-by: dependabot[bot] <49699333+dependabot[bot]@users.noreply.github.com>
2025-01-09 12:33:45 +01:00
Richard Berger
7455c8d173 libmesh: add newer versions up to 1.7.6 (#48476) 2025-01-09 04:07:48 -07:00
Vanessasaurus
99e2bce99f Automated deployment to update package flux-core 2025-01-08 (#48466)
Co-authored-by: github-actions <github-actions@users.noreply.github.com>
2025-01-09 03:38:42 -07:00
Buldram
4204d16fd3 toybox: new package (#48472) 2025-01-09 03:33:28 -07:00
dependabot[bot]
e76677cbd5 build(deps): bump pygments from 2.18.0 to 2.19.1 in /lib/spack/docs (#48431)
Bumps [pygments](https://github.com/pygments/pygments) from 2.18.0 to 2.19.1.
- [Release notes](https://github.com/pygments/pygments/releases)
- [Changelog](https://github.com/pygments/pygments/blob/master/CHANGES)
- [Commits](https://github.com/pygments/pygments/compare/2.18.0...2.19.1)

---
updated-dependencies:
- dependency-name: pygments
  dependency-type: direct:production
  update-type: version-update:semver-minor
...

Signed-off-by: dependabot[bot] <support@github.com>
Co-authored-by: dependabot[bot] <49699333+dependabot[bot]@users.noreply.github.com>
2025-01-09 11:31:42 +01:00
Wouter Deconinck
57357a540f py-iminuit: new versions through v2.30.1 (#48471)
* py-iminuit: new versions through v2.30.1
* py-iminuit: add tag hep

---------

Co-authored-by: wdconinc <wdconinc@users.noreply.github.com>
2025-01-09 03:18:18 -07:00
Adam J. Stewart
97e0b39b32 py-segmentation-models-pytorch: add v0.4.0 (#48473) 2025-01-08 15:32:09 -08:00
Paul Gessinger
247da9ea7a root: Patch range restriction and gcc lower bound (#48449)
* root: Restrict patch range

* root: Set minimum gcc version for cxxstd=20

* root: fix gcc range when cxxstd 20

Co-authored-by: Paul Gessinger <hello@paulgessinger.com>

---------

Co-authored-by: Wouter Deconinck <wdconinc@gmail.com>
2025-01-08 16:03:08 -06:00
Sinan
07f89a73d1 libspatialite: fix for newer libxml2 (#48125)
* package/libspatialite fix for newer libxml
* clarify constraint
* fix issue properly via variant

---------

Co-authored-by: sbulut <sbulut@3vgeomatics.com>
2025-01-08 12:58:14 -08:00
Krishna Chilleri
60cfdcb6cc py-neo4j: new package (#48383)
* add neo4j package

* [@spackbot] updating style on behalf of kchilleri

* modifying license header
2025-01-08 13:46:32 -06:00
Seth R. Johnson
1c9b042d3a googletest: new version, absl support, c++20 flag (#48328)
* googletest: new version, absl support, c++20 flag
* Update googletest header
2025-01-08 11:22:38 -08:00
Harmen Stoppels
c424611010 directory_layout.py: remove dependency on global spack.store.STORE (#48460) 2025-01-08 17:44:32 +01:00
Xuefeng Ding
35963d7d7d geant4-data: support G4TENDL (#48310)
* add parse tool, json, and load json

bug fix

add variants and conflictions for g4tendl

* correct format

* correct format

* update version mapping

* remove 1.0

* Update var/spack/repos/builtin/packages/geant4-data/package.py

Co-authored-by: Seth R. Johnson <johnsonsr@ornl.gov>

* add options

* depends on it

* fix typo

---------

Co-authored-by: Seth R. Johnson <johnsonsr@ornl.gov>
2025-01-08 10:40:06 -06:00
Wouter Deconinck
7e62ca864a ninja: support tests for 1.12 and later (#48385)
* ninja: support tests for 1.12:

* ninja: fix style
2025-01-08 16:57:25 +01:00
Harmen Stoppels
fa9ef0ac89 config.py: deprecate config:install_path_scheme (#48463) 2025-01-08 16:02:11 +01:00
Harmen Stoppels
55d9fe20e5 warnings.showwarning: set earlier (#48462)
Co-authored-by: haampie <haampie@users.noreply.github.com>
2025-01-08 07:27:22 -07:00
Harmen Stoppels
434a8d54d4 directory_layout: types and remove kwargs (#48459) 2025-01-08 14:09:36 +01:00
Adrien Bernede
7328c64fc7 CachedCMakePackage: set CMAKE_*_RPATH with implicit and extra rpaths (#48067)
This is useful when CachedCMakePackage is used without the Spack compiler wrapper.
2025-01-08 04:18:44 -07:00
Massimiliano Culpo
4be7b98fd2 Perl build system: add a dependency on gmake (#48437) 2025-01-08 09:10:22 +01:00
eugeneswalker
25ce6cce47 e4s cray rhel ci stack: re-enable and update for new cpe (#47697)
* e4s cray rhel ci stack: re-enable and update for new cpe, should fix cray libsci issue

* only run e4s-cray-rhel stack

* Mkae Autotools build_system point at correct build_directory

* remove selective enable of cray-rhel stacks

* restore SPACK_CI_DISABLE_STACKS

* use dot prefix to hide cray-sles jobs instead of comment-out

---------

Co-authored-by: Ryan Krattiger <ryan.krattiger@kitware.com>
2025-01-07 08:56:10 -08:00
eugeneswalker
418a9194e7 util-linux: add missing include for errno.h (#48433) 2025-01-07 08:48:25 -08:00
Seth R. Johnson
d16a578242 geant4: fix 10.7 build with c++20 (#48347) 2025-01-07 16:14:18 +01:00
Wouter Deconinck
aee2f5cf41 hep stack: add celeritas (#48404) 2025-01-07 09:47:17 -05:00
Harmen Stoppels
ca8ea63796 compiler.py: deal with temporarily broken compiler (#48418)
When a compiler is temporarily broken, we cache `c_compiler_output:`
`null`. This commit ensures we retry to obtain the `c_compiler_output`.
2025-01-07 09:56:05 +01:00
Paul Gessinger
3b21ff109f edm4hep: Add lower clang version bounds (#48419)
* edm4hep: Add lower clang version bounds

EDM4hep 0.99.1 introduced usage of consteval. While this is technically
supported in clang versions below 17, the implementation seems to be
incomplete and fail compilation of EDM4hep 0.99.1 and up.

* Update var/spack/repos/builtin/packages/edm4hep/package.py

Co-authored-by: Thomas Madlener <thomas.madlener@desy.de>

---------

Co-authored-by: Thomas Madlener <thomas.madlener@desy.de>
2025-01-06 22:14:50 -06:00
Gerry Knapp
d503f03473 additivefoam: update build scripts for @main (#48223) 2025-01-06 18:32:09 -08:00
Sinan
770d2fe4d7 libxml2: add version 2.13.5 and variant http (#48124)
* package/libxml2 add version 2.13.5

* add http variant

* Update var/spack/repos/builtin/packages/libxml2/package.py

Co-authored-by: Tamara Dahlgren <35777542+tldahlgren@users.noreply.github.com>

* Update var/spack/repos/builtin/packages/libxml2/package.py

Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>

---------

Co-authored-by: sbulut <sbulut@3vgeomatics.com>
Co-authored-by: Tamara Dahlgren <35777542+tldahlgren@users.noreply.github.com>
Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>
2025-01-06 18:01:19 -08:00
Wouter Deconinck
fcc35b70bb py-six: add v1.17.0 (#48401) 2025-01-06 17:11:16 -08:00
Wouter Deconinck
074387b29c wayland: add v1.23.0, v1.23.1; wayland-protocols: add v1.38, v1.39 (#48403)
* wayland-protocols: add v1.38, v1.39

* wayland: add v1.23.0, v1.23.1
2025-01-06 17:09:54 -08:00
Adam J. Stewart
4d26b93070 XNNPACK: add new versions, pin resources (#48405) 2025-01-06 17:07:02 -08:00
Wouter Deconinck
9d15a006f8 py-rucio-clients: add through v36.0.0.post2 (#48407)
* py-rucio-clients: add through v36.0.0.post2

* [@spackbot] updating style on behalf of wdconinc

---------

Co-authored-by: wdconinc <wdconinc@users.noreply.github.com>
2025-01-06 17:01:24 -08:00
Wouter Deconinck
7e69650806 py-deepdiff: add through v8.1.1 (#48410)
* py-deepdiff: add through v8.1.1
* py-orderly-set: new package
* py-orderly-set: add v5.2.1, v5.2.2 to satisfy audit
2025-01-06 15:14:26 -08:00
G-Ragghianti
142469f92e Fixing description (#48429) 2025-01-06 14:57:03 -08:00
Wouter Deconinck
cb6cb023d2 py-click: add v8.1.8 (switch to flit-core) (#48422) 2025-01-06 13:50:15 -08:00
Olivier Cessenat
920614a799 hevea: add v2.36 (#48273) 2025-01-06 12:57:29 -07:00
rfbgo
5be40f1a5a py-espresso: add v4.1.0 -> v4.2.2 (#47864)
Co-authored-by: Massimiliano Culpo <massimiliano.culpo@gmail.com>
2025-01-06 20:44:23 +01:00
Lehman Garrison
aa0ab3b38b py-py-spy: add 0.4.0, and make rust & CargoPackage respect -j (#47883)
* py-py-spy: add 0.4.0

* py-py-spy: port from Package to CargoPackage

* CargoPackage: respect make_jobs

* rust: respect make_jobs during build and install

* spack style

* CargoBuilder: fix make_jobs syntax

* CargoBuilder: don't write to $HOME, use stage dir
2025-01-06 12:14:19 -07:00
Massimiliano Culpo
85c125a0f5 Remove spack.config.add_default_platform_scope (#48425)
This function is used only in tests, and pushes a scope to the
current global CONFIG, when on Windows, regardless of what that
CONFIG is.
2025-01-06 20:06:02 +01:00
Krishna Chilleri
2842c6d191 py-typer: add version 0.5.0 (#48285) 2025-01-06 18:08:27 +01:00
Wouter Deconinck
e8309b16fc thepeg: restrict rivet versions; evtgen: new variant sherpa (#48264)
* thepeg: restrict to rivet@:3 when @:2.2

* evtgen: new variant sherpa

* herwig3: require at least one external EvtGen component

* evtgen: fix typo

* evtgen: rm deprecated 01.* and autotools build system

* thepeg: fix typo

* herwig3: fix conflicts ^evtgen
2025-01-06 09:27:48 -07:00
dmagdavector
4dd55e1b67 podman: add v4.6.2, 4.7.2, 4.8.3, 4.9.3 (#48112) 2025-01-06 10:42:18 -05:00
Wouter Deconinck
227fa1a482 gh: check_args needs ./... and some skipped tests (#48408) 2025-01-06 10:40:30 -05:00
Thomas Madlener
ee47d877ff rivet, yoda: Add new versions with back-port fixes (#48141)
* rivet: add version 3.1.11 with some back-port fixes

Some back-ported fixes from the 4.x series. Most importantly the
possibility to build against HepMC 3.3.0.

* yoda: Add version 1.9.11

* Add a conflict with hepmc=2

* Unify hepmc@3.3.0 conflicts into one statement

* Remove conflict and update conditional hepmc variant

* Use caret to signify conflict with dependency

Co-authored-by: Wouter Deconinck <wdconinc@gmail.com>

* Make conflict and msg more specific

* Add dedicated version dependency to yoda

---------

Co-authored-by: Wouter Deconinck <wdconinc@gmail.com>
2025-01-06 08:32:52 -06:00
Harmen Stoppels
4b4be2e2c2 cmd/__init__.py: pass tests in case n=1 (#48417) 2025-01-06 15:30:29 +01:00
Valentin Volkl
0e6e61b32f alpgen: update website (#48415) 2025-01-06 08:07:26 -06:00
Harmen Stoppels
79027884c7 Add spack API warning with file/line (#48416) 2025-01-06 03:43:04 -07:00
Olivier Cessenat
beadf06caa ocamlbuild: add v0.14.1 -> v0.15.0 (#48272) 2025-01-06 08:36:16 +01:00
Niclas Jansson
fc24be5c2b neko: add v0.9.1 and deprecate old versions (#48306) 2025-01-06 07:57:14 +01:00
Tim Fuller
8d5ece07d1 Update openmpi/package.py to allow for non-standard cxx name (#48168)
Allows user to define an alternative name for `mpic++` in `packages:openmpi:package_attributes:cxxname`.
2025-01-05 03:22:57 -07:00
Wouter Deconinck
cf06b395b7 snakemake: skip_modules snakemake.common.tests (#48395) 2025-01-04 23:19:50 +01:00
Seth R. Johnson
fd51f1ce65 RCCL: only build tests when requested (#48387) 2025-01-04 09:46:15 -05:00
Matt Thompson
0576ef081a mapl: add v2.51.2 (#48220) 2025-01-04 13:49:00 +01:00
Dom Heinzeller
20a8ba77b0 ectrans: add conflict for versions 1.5.x with oneapi@2025: (#48238) 2025-01-04 13:44:10 +01:00
Kacper Kornet
9b4c5d1c55 python: add v3.13.1 and v3.12.8 (#48356) 2025-01-04 13:42:12 +01:00
Harmen Stoppels
6622f7a89c Revert "CI: Move the build stage to the project root instead of tmp (#47996)" (#48397)
This reverts commit ef615bcc7e.
2025-01-04 11:59:22 +01:00
Cody Balos
d463b172a6 sundials: add v7.2.1 (#48248) 2025-01-04 11:09:04 +01:00
Adam J. Stewart
ab6fa2680f py-lightning: add v2.5.0 (#48249) 2025-01-04 11:07:43 +01:00
Wouter Deconinck
d7559c8caf qt: add v5.15.16 (#48147) 2025-01-04 11:02:26 +01:00
Wouter Deconinck
bd1fedcc18 jsoncpp: add v1.9.6 (#48263) 2025-01-04 11:02:03 +01:00
Adam J. Stewart
9254ef5b3f py-torchgeo: add v0.6.2 (#48230) 2025-01-04 11:00:33 +01:00
Olivier Cessenat
39ad98a359 ocaml: new v4.14.2, and v5.2.1 (#48271) 2025-01-04 10:50:45 +01:00
Wouter Deconinck
9d07efa0dc gobject-introspection: patch to import setuptools before distutils (#47879) 2025-01-04 10:49:25 +01:00
Olivier Cessenat
de2caf956d latex2html: add v2024.2 (#48282) 2025-01-04 10:48:10 +01:00
Wouter Deconinck
6b296fe8ad go: add v1.23.4 (#48335)
* go: add v1.23.4

* Update copyright for new year

---------

Co-authored-by: Alec Scott <hi@alecbcs.com>
2025-01-04 02:42:52 -07:00
Teague Sterling
9cccdc5424 xkeyboard-config: add xkbdata provider (#45571)
Signed-off-by: Teague Sterling <teaguesterling@gmail.com>
2025-01-04 10:39:45 +01:00
Wouter Deconinck
b4f048cc14 nlopt: add v2.9.1 (supports python@3.13) (#48309) 2025-01-04 10:29:31 +01:00
Wouter Deconinck
5fd15dc541 R: ensure Makeconf has full libs directories (#48323) 2025-01-04 10:28:46 +01:00
Wouter Deconinck
0471af4c16 gsoap: depends_on autoconf etc type build (#48247) 2025-01-04 10:27:00 +01:00
archiepowell-linaro
fb1a509964 linaro-forge: add v24.1.1 (#48241) 2025-01-04 10:21:22 +01:00
Wouter Deconinck
4f00d7cc9b gettext: add v0.23.1 (#48348) 2025-01-04 10:19:40 +01:00
Wouter Deconinck
91726147ae pkgconf: add v2.3.0 (#48346) 2025-01-04 10:18:28 +01:00
Wouter Deconinck
7998d8ed52 readline: 12 more upstream patches (#48343) 2025-01-04 10:17:28 +01:00
Wouter Deconinck
1061db7c8c apptainer: add v1.3.5, v1.3.6 (#48330) 2025-01-04 10:16:14 +01:00
Wouter Deconinck
39f38d3f28 bash: add patches 27 to 37 (#48349) 2025-01-04 10:15:50 +01:00
Adam J. Stewart
173dcd6be8 py-earthengine-api: add v1.4.3 (#48340) 2025-01-04 10:14:28 +01:00
Adam J. Stewart
de2be4d999 google-cloud-cli: add v504.0.1, document Python version support (#48339)
Co-authored-by: adamjstewart <adamjstewart@users.noreply.github.com>
2025-01-04 10:14:05 +01:00
Niklas Bölter
619a0a8d81 lammps: added extra-command package introduced in @20240829 (#48355)
d61c94c0f3
2025-01-04 10:10:08 +01:00
Alec Scott
598abf0bef typos: new package (#48368) 2025-01-04 10:09:03 +01:00
Wouter Deconinck
99a63fdff2 tcsh: add v6.24.10, v6.24.14 (#48367) 2025-01-04 10:08:29 +01:00
Vanessasaurus
64773932b2 flux-security: add 0.13.0(#48345)
Co-authored-by: github-actions <github-actions@users.noreply.github.com>
2025-01-04 10:05:13 +01:00
Vanessasaurus
bc4b5dd62e flux-sched: v0.40.0 (#48344)
Co-authored-by: github-actions <github-actions@users.noreply.github.com>
2025-01-04 10:04:31 +01:00
Wouter Deconinck
0652b01eca zlib-ng: add v2.2.2, v2.2.3 (#48177) 2025-01-04 10:03:29 +01:00
Wouter Deconinck
6053fc9b6e pmix: add v5.0.4, v5.0.5 (#48333) 2025-01-04 10:02:12 +01:00
Alec Scott
7c9582a172 curl: add v8.11.1 (#48369) 2025-01-04 10:00:56 +01:00
Alec Scott
2ffa63470c fzf: add v0.57.0 (#48370) 2025-01-04 09:59:13 +01:00
Wouter Deconinck
7bf7292a87 py-particle: add v0.25.[0-2] (#48371) 2025-01-04 09:58:47 +01:00
Alec Scott
ef55fe7f4b glab: add v1.51.0 (#48372) 2025-01-04 09:58:07 +01:00
Alec Scott
6e8fe490e0 goimports: add v0.28.0 (#48375) 2025-01-04 09:56:57 +01:00
Alec Scott
450e56f207 gopls: add v0.17.1 (#48376) 2025-01-04 09:56:20 +01:00
Alec Scott
d33616c291 hugo: add v0.140.2 (#48377) 2025-01-04 09:51:58 +01:00
Adam J. Stewart
4a37bb38ce py-pillow: add v11.1.0 (#48354) 2025-01-04 09:39:33 +01:00
Alec Scott
6f2d07e99a kubectl: add v1.32.0 (#48378) 2025-01-04 09:38:39 +01:00
Alec Scott
8f415cd2b5 kubernetes: add v1.32.0 (#48379) 2025-01-04 09:37:53 +01:00
Alec Scott
e3d3e79037 py-python-lsp-server: add v1.11.0 (#48380) 2025-01-04 09:37:12 +01:00
Alec Scott
dbd290d1ac rust: add v1.83.0 (#48381) 2025-01-04 09:36:15 +01:00
Krishna Chilleri
e6bb795bcc py-apscheduler: add v3.6.3 (#48279) 2025-01-04 09:33:41 +01:00
Wouter Deconinck
ab6fa2f6d3 cfitsio: add v4.4.1, v4.5.0; variant +fortran (#48388) 2025-01-04 09:21:49 +01:00
Wouter Deconinck
8fe3fe4918 heppdt: patch for broken test (#48390) 2025-01-04 09:10:45 +01:00
Adam J. Stewart
cb770eb8e3 py-scipy: add v1.15.0 (#48393) 2025-01-04 09:04:53 +01:00
Adam J. Stewart
0a03a92e78 Avoid trailing slashes in strings (#48359) 2025-01-03 23:00:18 +01:00
Satish Balay
7f9019c1ca kokkos and kokkos-kernels - add v4.5.01 (#48363)
trilinos@develop: update kokkos dependency
2025-01-03 15:56:23 -06:00
Wouter Deconinck
1b9d001f6a feat: add HEP cloud_pipeline stack (#40932)
* dd4hep: depends_on root +root7 in some cases

* dd4hep: avoid self-referential whens -> conflicts

* feat: add HEP cloud_pipeline stack

* [hep] add hep jobs to .gitlab-ci.yml

* [hep] rm hep-generate image override

* [hep] fix root variants; add some more packages

* [hep] disable hep-build for now

* [hep] hepmc3 +interfaces

* [hep] hep-generate on gcc-11.4 runner image

* [hep] sherpa -blackhat

* [hep] align package requirements to e4s for more cache hits

* [hep] lcio -examples due to conflicts

* [hep] marks geant4-data as external

* [hep] enable build

* [hep] elfutils now always has bzip2 xz dependency

* [hep] avoid gaudi ^gdb@8.1 with explicit version gdb@14.1

* [hep] geant4 -vtk for now

* [hep] root ~oracle

* [hep] external geant4-data@11.2.0

* [hep] sherap ~python

* [hep] gaudi ^gdb +python to avoid failing gdb@8.1

* [hep] pythia8 ~madgraph5amc

* [hep] remove garfieldpp which fails to download

* [hep] sherpa ~recola because recola needs pic variant

* [hep] sherpa ~rivet since conflicts("cxxstd=11", when="~rivet")

* [hep] unify: when_possible

* [hep] thepeg ~rivet

* [hep] root ~shadow

* [hep] lcio ~jar

* [hep] root ~postgres

* [hep] herwig3 ~evtgen

* [hep] herwig3 has no evtgen variant

* [hep] no image override in hep-generate

* [hep] re-add ubuntu-22.04 image for newer gcc than 7

* [hep] remove herwig3

* [hep] remove package configs

* [hep] avoid non-existent variants in latest versions

* [hep] allow for sherpa@3:

* [hep] acts cxxstd=20

* [hep] gaudi ^gdb +python

* [hep] gaudi ^gdb +debuginfod

* [hep] add some packages to large and huge kubernetes groups

* [hep] root +rpath

* [hep] add qt-declarative to large 8core 8GB CI group

* [hep] add sherpa to 8 core, 3 GB CI medium group

* [hep] add root to 12 core, 19 GB huge CI group

* [hep] gaudi: touch pytest.ini

* [hep] ~ instead of -

Co-authored-by: Seth R. Johnson <johnsonsr@ornl.gov>

---------

Co-authored-by: Seth R. Johnson <johnsonsr@ornl.gov>
2025-01-03 12:22:53 -07:00
Arash Partow
a52d817fa0 exprtk: add new package (#48326) 2025-01-03 12:48:05 -06:00
David Huber
ec286e857f Disable py-numpy AVX512 instructions when compiled with Intel (#47941)
* Disable numpy AVX512 when compiled with Intel classic

* Add py-numpy v1.26.5

* Add patch to handle AVX512 conversions

* Remove unneeded patch.

* Remove unnecessary tag

* Move blas_config_settings to config_settings

* Cleaned up blas settings
2025-01-03 11:27:59 -07:00
Andrey Alekseenko
690a6045a9 gromacs: remove dependency on Fortran (#48386)
* gromacs: remove dependency on Fortran

Fortran was removed from GROMACS core since 4.6. There are a few contrib
files around, but they are not built anyway.

Also fix a couple typos.

* [@spackbot] updating style on behalf of al42and

---------

Co-authored-by: al42and <al42and@users.noreply.github.com>
2025-01-03 07:58:22 -07:00
Harmen Stoppels
0a070512e6 tests: remove file requirement (#48362) 2025-01-03 15:49:06 +01:00
Wouter Deconinck
cb37f973d9 xxhash: add v0.8.3 (#48382) 2025-01-03 09:36:04 -05:00
Wouter Deconinck
33740c8d24 fuse-overlayfs: add v1.14 (#48331) 2025-01-03 13:07:10 +01:00
Wouter Deconinck
e374f8fb66 build_environment: only traverse unique edges (#48301)
Wrap EnvironmentVisitor in CoverEdgesVisitor so only unique edges are enqueued.

Co-authored-by: Harmen Stoppels <harmenstoppels@gmail.com>
2025-01-03 12:17:26 +01:00
Krishna Chilleri
0394def68b py-uvicorn: add v0.27.1 (#48287)
* py-uvicorn: add version 0.27.1

* add required py-typing-extensions dependency
2025-01-02 22:13:19 -07:00
Seth R. Johnson
0782097775 geant4: fix bad patch for 10.x (#48332) 2025-01-02 15:27:40 -07:00
eugeneswalker
460bc82632 e4s ci: cleanup; see if failures have been fixed (#48137)
* e4s ci: cleanup; see if failures have been fixed

* comment out dealii+cuda cuda_arch=90 due to cuda@12 conflict

* paraview unpin @5.11

* disable paraview cuda90

* ecp-dav ~paraview cuda90

* disable lbann gfx90a

* disable upcxx +cuda

* comment out nek5000 and lammps +cuda

* comment out failed specs

* comment out slepc+rocm

* comment out failures

* comment out failures

* comment out failing paraview buids;

* comment out petsc+rocm

* sort specs
2025-01-02 13:27:40 -08:00
Massimiliano Culpo
880eb36a1f charliecloud: disable libsquashfuse when ~squashfuse (#48317) 2025-01-02 21:45:26 +01:00
Massimiliano Culpo
1f3b4e116f Add a C dependency to hipblaslt, and rocthrust (#48320) 2025-01-02 21:44:40 +01:00
Vicente Bolea
9b8835ba79 paraview: add v5.13.2 (#48324) 2025-01-02 10:55:26 -06:00
Kacper Kornet
fb1d4f8907 zoltan: Fix buliding with gcc@14 and ifx. (#48358)
* zoltan: Ignore errors about incompatible pointer type with gcc@14

In gcc 14 -Werror=incompatible-pointer-types is now the default.
Silence it until it gets fixed in zoltan upstream.

* zoltan: Fix linking error when built with ifx
2025-01-02 11:54:06 -05:00
Todd Gamblin
f635337af8 Remove years from license headers (#48352) 2025-01-02 15:40:28 +01:00
Wouter Deconinck
8f145f5e8e node-js: always depend on some python, regardless of lower/upper limits (#48350) 2025-01-02 03:00:09 -08:00
Alec Scott
022ae8503a oxide-rs: new-package 2025-01-02 01:17:37 -08:00
Alberto Invernizzi
3c64821c64 node-js: less strict python requirement for newer versions of node-js (#47942)
* less strict python requirement for newer versions of node-js

* fix style

* add back constraints for deprecated versions

* Update var/spack/repos/builtin/packages/node-js/package.py

Co-authored-by: Wouter Deconinck <wdconinc@gmail.com>

* Update var/spack/repos/builtin/packages/node-js/package.py

Co-authored-by: Wouter Deconinck <wdconinc@gmail.com>

* remove "v" from versions in some constraints

---------

Co-authored-by: Wouter Deconinck <wdconinc@gmail.com>
2025-01-01 16:15:17 -06:00
Alec Scott
866785bd74 py-jedi: fix python dependency constraints (#48322) 2024-12-31 20:56:53 -06:00
Buldram
60d321012e nim: add 2.0.14 (#48284)
https://nim-lang.org/blog/2024/12/24/nim-2014-released.html
2024-12-31 11:24:24 -05:00
Matt Thompson
8ee5cf4b31 mepo: add v2.2.0 (#48283) 2024-12-31 11:22:53 -05:00
Krishna Chilleri
d2a2ae3699 py-tomlkit: add version 0.11.8 (#48286) 2024-12-31 11:21:35 -05:00
Adam J. Stewart
547e324ee5 py-jsonargparse: add v4.35.0 (#48314) 2024-12-31 11:06:24 -05:00
Adam J. Stewart
693c74324a py-torchmetrics: add v1.6.1 (#48297) 2024-12-31 11:04:31 -05:00
Asa
dcf710a32d Add version 0.2.0 to py-olcf-velocity (#48311) 2024-12-31 10:47:51 -05:00
Massimiliano Culpo
38276d13c2 Add a C dependency to a few cargo packages (#48319)
* fd: add a dependency on C

See https://gitlab.spack.io/spack/spack/-/jobs/14424172

* lsd: add a dependency on C

See https://gitlab.spack.io/spack/spack/-/jobs/14424171

* ripgrep: add a dependency on C

See https://gitlab.spack.io/spack/spack/-/jobs/14424170

* eza: add a dependency on C

See https://gitlab.spack.io/spack/spack/-/jobs/14424168

* hyperfine: add a dependency on C

See https://gitlab.spack.io/spack/spack/-/jobs/14424167
2024-12-31 10:05:49 -05:00
Massimiliano Culpo
611b0f19b3 gnutls: add v3.8.4, fixed issue with non rpathed zstd (#48321)
See https://gitlab.spack.io/spack/spack/-/jobs/14427936
2024-12-31 10:04:19 -05:00
Tara Drwenski
337d9bebf8 Camp: Fix syntax error (#48269)
* Fix camp syntax error by providing first archs element instead of tuple

* Provide all architectures as semicolon separated list
2024-12-30 15:04:10 -08:00
Massimiliano Culpo
71512f5682 mpich: gather in a single place env modifications needed by mpich derivatives (#48276)
* mpich: gather in a single place env modifications needed by mpich derivatives

MPICH, and its derivatives, share a lot of copy/paste code to setup the
environment during the different stages of the package life-cycle.

This commit gathers the common modifications in a single place (a mixin class),
living in the Mpich package, and makes derivatives import, and reuse, it.

* Fix docs for Python < 3.13
2024-12-30 15:42:16 -07:00
Xuefeng Ding
a7373b8a31 gcc: fix typo in setup_run_environment condition (#48307) 2024-12-30 13:47:54 +01:00
Satish Balay
05de2b1ba1 petsc: fix compilers listed in pkgconfig/petsc.pc (#48201)
* petsc: fix compilers listed in pkgconfig/petsc.pc

* Also fix reconfigure*.py
2024-12-27 22:09:00 -06:00
Chris Marsh
f57d7fb952 gsl: update patch for 2.8
The 2.7 patch does not apply on gsl@2.8.
This is a manual fix of the 2.6 patch to update it to clealy apply to gsl@2.8
2024-12-28 00:49:03 +01:00
Karol Krizka
e76f8fda2d openloops: use cmodel small on aarch64 instead of large (#48299) 2024-12-27 09:07:54 -07:00
Juan Miguel Carceller
66a00fe103 freeglut: add v3.6.0 (#48292)
* freeglut: add v3.6.0

* Change the version range for the patch

---------

Co-authored-by: jmcarcell <jmcarcell@users.noreply.github.com>
2024-12-26 09:07:50 -07:00
dependabot[bot]
15124d7c73 build(deps): bump urllib3 from 2.2.3 to 2.3.0 in /lib/spack/docs (#48278)
Bumps [urllib3](https://github.com/urllib3/urllib3) from 2.2.3 to 2.3.0.
- [Release notes](https://github.com/urllib3/urllib3/releases)
- [Changelog](https://github.com/urllib3/urllib3/blob/main/CHANGES.rst)
- [Commits](https://github.com/urllib3/urllib3/compare/2.2.3...2.3.0)

---
updated-dependencies:
- dependency-name: urllib3
  dependency-type: direct:production
  update-type: version-update:semver-minor
...

Signed-off-by: dependabot[bot] <support@github.com>
Co-authored-by: dependabot[bot] <49699333+dependabot[bot]@users.noreply.github.com>
2024-12-26 09:03:38 -07:00
Karol Krizka
a14f10e882 openloops: Fix configuration of cmodel setting for gfortran (#48288)
* openloops: Add cmodel to user config file to override setting added in 2.1.2.

* openloops: Change cmodel from small to large following author recommendation.
2024-12-26 08:44:08 -06:00
Joseph Wang
16d3de4540 opendatadetector: fix attribute for libs (#48290) 2024-12-26 08:35:04 -06:00
psakievich
78bd905fe0 Ensure command_line scope is always last (#48255) 2024-12-25 14:32:31 -07:00
Harmen Stoppels
e9cdcc4af0 build caches: collect files to relocate while tarballing w/o file (#48212)
A few changes to tarball creation (for build caches):
- do not run file to distinguish binary from text
- file is slow, even when running it in a batched fashion -- it usually reads all bytes and has slow logic to categorize specific types
- we don't need a highly detailed file categorization; a crude categorization of elf, mach-o, text suffices.
detecting elf and mach-o is straightforward and cheap
- detecting utf-8 (and with that ascii) is highly accurate: false positive rate decays exponentially as file size increases. Further it's not only the most common encoding, but the most common file type in package prefixes.
iso-8859-1 is cheaply (but heuristically) detected too, and sufficiently accurate after binaries and utf-8 files are classified earlier
- remove file as a dependency of Spack in general, which makes Spack itself easier to install
- detect file type and need to relocate as part of creating the tarball, which is more cache friendly and thus faster
2024-12-24 10:53:13 -07:00
Massimiliano Culpo
aca469b329 mpi: remove setting unused monkey patched variable (#48275)
mpicxx_shared_libraries seems a relic of #1550, and is
not currently used by any builtin package.

Thus, cleanup the recipes, and avoid monkey-patching
spec objects.
2024-12-24 14:29:53 +01:00
Wouter Deconinck
c65a0e03c4 doc: ensure getting_started has bootstrap list output in correct place (#48281) 2024-12-24 04:48:02 -07:00
Wouter Deconinck
b02340724d gaudi: Fix nonexistent 'libs' (#48274) 2024-12-23 12:57:42 -07:00
Philipp Edelmann
250de0cdf2 fix spack external find for Python >= 3.13 (#48170)
Python >= 3.13 does not have the crypt variant anymore. Still no matter
if the test for crypt succeeds (which it can on Fedora providing its own
crypt module for Python 3.13) or fails, it will add +crypt or ~crypt,
which both fail because the variant only exists until Python 3.12.

Co-authored-by: Richard Berger <rberger@lanl.gov>
2024-12-23 10:56:13 -08:00
Carson Woods
da97e9eaa7 py-fitter: add v1.5.2, v1.6.0 (#41035) 2024-12-23 18:29:14 +01:00
Massimiliano Culpo
a3322459fe bootstrap mirror: fix references from v0.4 to v0.6 (#48235) 2024-12-23 14:06:48 +01:00
Olivier Cessenat
88d5393570 silo: variant python needs python (#48257)
* silo: variant python needs python

* Dependency to Python did not resolve the "Python.h" header not being found

Added the -I path to Python header to the compiler.
Having silo depend on python was not sufficient to get the path to python.
Maybe there is a smarter way to do that, but this one works.

* Update var/spack/repos/builtin/packages/silo/package.py

Co-authored-by: Wouter Deconinck <wdconinc@gmail.com>

* Update var/spack/repos/builtin/packages/silo/package.py

Co-authored-by: Wouter Deconinck <wdconinc@gmail.com>

* Update var/spack/repos/builtin/packages/silo/package.py

Co-authored-by: Wouter Deconinck <wdconinc@gmail.com>

---------

Co-authored-by: Wouter Deconinck <wdconinc@gmail.com>
2024-12-22 19:13:23 -06:00
Thomas Madlener
d1d61820f4 herwig, thepeg: Add latest version and specify rivet dependencies better (#48142)
* thepeg: Correctly specify rivet version for dependency

* herwig3: Add latest version 7.3.0

* thepeg: Make sure to have consistent hepmc version

rivet and thepeg need to have the same hepmc version otherwise things
will not compile
2024-12-22 15:36:14 -06:00
prakash
858c7ca1a2 Updates to AMR-Wind: adding new releases and an option to enable new spec option (#48229) 2024-12-22 10:25:53 -07:00
Elliott Slaughter
5b1394f1cf legion: Add 24.12.0. (#48221) 2024-12-21 20:00:25 -07:00
Christophe Prud'homme
9554f8802b libzip: links with external libs found on host and new version (#47230)
* libzip links with external libs found on host feelpp/spack#6

* add maintainers

* fix style

* use multi-build system

/cc @wdconinc

* fix style

* rm space and rename variant bz2 to bzip2

/cc @wdconinc

* fix variant name for bzip2

* zstd is supported in libzip@:1.8

* fix style

* fix style

* fix style

* rm deprecated version and versions that cannot be found easily

use only cmake from now on

* fix style

* fix style

* use variant when option for zstd

* Update var/spack/repos/builtin/packages/libzip/package.py

Co-authored-by: Wouter Deconinck <wdconinc@gmail.com>

* fix style

/cc @wdconinc

---------

Co-authored-by: Wouter Deconinck <wdconinc@gmail.com>
2024-12-21 19:22:50 -06:00
Kyle Knoepfel
b78c517582 Support oneTBB 2021.13.0 and 2022.0.0 (#48239) 2024-12-20 23:32:58 -07:00
Dom Heinzeller
aaf0319731 Add conflict for py-scipy@1.14: with Intel Classic (#48251) 2024-12-20 23:23:27 -07:00
Paul Gessinger
21d5fd6ec1 dd4hep: Fix faulty package configuration (#48236) 2024-12-20 21:34:25 -07:00
Mike VanDenburgh
d6f71a2afd Fix import error in CI log aggregation script (#48245)
Fix CI log aggregation script failing due to an import error.
2024-12-20 16:14:17 -07:00
9435 changed files with 12019 additions and 20448 deletions

View File

@@ -1,5 +1,3 @@
# (c) 2022 Lawrence Livermore National Laboratory
git config --global user.email "spack@example.com"
git config --global user.name "Test User"
git config --global core.longpaths true

View File

@@ -161,11 +161,7 @@ jobs:
source share/spack/setup-env.sh
spack -d gpg list
tree $HOME/.spack/bootstrap/store/
- name: Bootstrap File
run: |
source share/spack/setup-env.sh
spack -d python share/spack/qa/bootstrap-file.py
tree $HOME/.spack/bootstrap/store/
windows:
runs-on: "windows-latest"
@@ -196,9 +192,3 @@ jobs:
spack -d gpg list
./share/spack/qa/validate_last_exit.ps1
tree $env:userprofile/.spack/bootstrap/store/
- name: Bootstrap File
run: |
./share/spack/setup-env.ps1
spack -d python share/spack/qa/bootstrap-file.py
./share/spack/qa/validate_last_exit.ps1
tree $env:userprofile/.spack/bootstrap/store/

View File

@@ -29,7 +29,7 @@ jobs:
- run: coverage xml
- name: "Upload coverage report to CodeCov"
uses: codecov/codecov-action@05f5a9cfad807516dbbef9929c4a42df3eb78766
uses: codecov/codecov-action@1e68e06f1dbfde0e4cefc87efeba9e4643565303
with:
verbose: true
fail_ci_if_error: false

View File

@@ -140,7 +140,7 @@ jobs:
- name: Install dependencies
run: |
dnf install -y \
bzip2 curl file gcc-c++ gcc gcc-gfortran git gnupg2 gzip \
bzip2 curl gcc-c++ gcc gcc-gfortran git gnupg2 gzip \
make patch tcl unzip which xz
- uses: actions/checkout@11bd71901bbe5b1630ceea73d27597364c9af683
- name: Setup repo and non-root user

View File

@@ -8,8 +8,9 @@ or http://www.apache.org/licenses/LICENSE-2.0) or the MIT license,
Copyrights and patents in the Spack project are retained by contributors.
No copyright assignment is required to contribute to Spack.
Spack was originally distributed under the LGPL-2.1 license. Consent from
contributors to relicense to Apache-2.0/MIT is documented at
Spack was originally developed in 2013 by Lawrence Livermore National
Security, LLC. It was originally distributed under the LGPL-2.1 license.
Consent from contributors to relicense to Apache-2.0/MIT is documented at
https://github.com/spack/spack/issues/9137.

View File

@@ -1,6 +1,6 @@
MIT License
Copyright (c) 2013-2024 LLNS, LLC and other Spack Project Developers.
Copyright (c) Spack Project Developers.
Permission is hereby granted, free of charge, to any person obtaining a copy
of this software and associated documentation files (the "Software"), to deal

View File

@@ -1,5 +1,4 @@
# Copyright 2013-2024 Lawrence Livermore National Security, LLC and other
# Spack Project Developers. See the top-level COPYRIGHT file for details.
# Copyright Spack Project Developers. See COPYRIGHT file for details.
#
# SPDX-License-Identifier: (Apache-2.0 OR MIT)
import subprocess

View File

@@ -1,7 +1,6 @@
#!/bin/sh
#
# Copyright 2013-2024 Lawrence Livermore National Security, LLC and other
# sbang project developers. See the top-level COPYRIGHT file for details.
# Copyright sbang project developers. See COPYRIGHT file for details.
#
# SPDX-License-Identifier: (Apache-2.0 OR MIT)

View File

@@ -1,8 +1,7 @@
#!/bin/sh
# -*- python -*-
#
# Copyright 2013-2024 Lawrence Livermore National Security, LLC and other
# Spack Project Developers. See the top-level COPYRIGHT file for details.
# Copyright Spack Project Developers. See COPYRIGHT file for details.
#
# SPDX-License-Identifier: (Apache-2.0 OR MIT)

View File

@@ -1,7 +1,6 @@
#!/bin/sh
#
# Copyright 2013-2024 Lawrence Livermore National Security, LLC and other
# Spack Project Developers. See the top-level COPYRIGHT file for details.
# Copyright Spack Project Developers. See COPYRIGHT file for details.
#
# SPDX-License-Identifier: (Apache-2.0 OR MIT)

View File

@@ -1,5 +1,4 @@
:: Copyright 2013-2024 Lawrence Livermore National Security, LLC and other
:: Spack Project Developers. See the top-level COPYRIGHT file for details.
:: Copyright Spack Project Developers. See COPYRIGHT file for details.
::
:: SPDX-License-Identifier: (Apache-2.0 OR MIT)
::#######################################################################

View File

@@ -1,5 +1,4 @@
# Copyright 2013-2024 Lawrence Livermore National Security, LLC and other
# Spack Project Developers. See the top-level COPYRIGHT file for details.
# Copyright Spack Project Developers. See COPYRIGHT file for details.
# SPDX-License-Identifier: (Apache-2.0 OR MIT)
# #######################################################################

View File

@@ -1,5 +1,4 @@
# Copyright 2013-2024 Lawrence Livermore National Security, LLC and other
# Spack Project Developers. See the top-level COPYRIGHT file for details.
# Copyright Spack Project Developers. See COPYRIGHT file for details.
#
# SPDX-License-Identifier: (Apache-2.0 OR MIT)

View File

@@ -65,6 +65,7 @@ packages:
unwind: [libunwind]
uuid: [util-linux-uuid, libuuid]
wasi-sdk: [wasi-sdk-prebuilt]
xkbdata-api: [xkeyboard-config, xkbdata]
xxd: [xxd-standalone, vim]
yacc: [bison, byacc]
ziglang: [zig]

View File

@@ -1,5 +1,4 @@
# Copyright 2013-2024 Lawrence Livermore National Security, LLC and other
# Spack Project Developers. See the top-level COPYRIGHT file for details.
# Copyright Spack Project Developers. See COPYRIGHT file for details.
#
# SPDX-License-Identifier: (Apache-2.0 OR MIT)

View File

@@ -1,5 +1,4 @@
.. Copyright 2013-2024 Lawrence Livermore National Security, LLC and other
Spack Project Developers. See the top-level COPYRIGHT file for details.
.. Copyright Spack Project Developers. See COPYRIGHT file for details.
SPDX-License-Identifier: (Apache-2.0 OR MIT)

View File

@@ -1,5 +1,4 @@
.. Copyright 2013-2024 Lawrence Livermore National Security, LLC and other
Spack Project Developers. See the top-level COPYRIGHT file for details.
.. Copyright Spack Project Developers. See COPYRIGHT file for details.
SPDX-License-Identifier: (Apache-2.0 OR MIT)

View File

@@ -1,5 +1,4 @@
.. Copyright 2013-2024 Lawrence Livermore National Security, LLC and other
Spack Project Developers. See the top-level COPYRIGHT file for details.
.. Copyright Spack Project Developers. See COPYRIGHT file for details.
SPDX-License-Identifier: (Apache-2.0 OR MIT)

View File

@@ -1,5 +1,4 @@
.. Copyright 2013-2024 Lawrence Livermore National Security, LLC and other
Spack Project Developers. See the top-level COPYRIGHT file for details.
.. Copyright Spack Project Developers. See COPYRIGHT file for details.
SPDX-License-Identifier: (Apache-2.0 OR MIT)

View File

@@ -1,5 +1,4 @@
.. Copyright 2013-2024 Lawrence Livermore National Security, LLC and other
Spack Project Developers. See the top-level COPYRIGHT file for details.
.. Copyright Spack Project Developers. See COPYRIGHT file for details.
SPDX-License-Identifier: (Apache-2.0 OR MIT)

View File

@@ -1,5 +1,4 @@
.. Copyright 2013-2024 Lawrence Livermore National Security, LLC and other
Spack Project Developers. See the top-level COPYRIGHT file for details.
.. Copyright Spack Project Developers. See COPYRIGHT file for details.
SPDX-License-Identifier: (Apache-2.0 OR MIT)

View File

@@ -1,5 +1,4 @@
.. Copyright 2013-2024 Lawrence Livermore National Security, LLC and other
Spack Project Developers. See the top-level COPYRIGHT file for details.
.. Copyright Spack Project Developers. See COPYRIGHT file for details.
SPDX-License-Identifier: (Apache-2.0 OR MIT)

View File

@@ -1,5 +1,4 @@
.. Copyright 2013-2024 Lawrence Livermore National Security, LLC and other
Spack Project Developers. See the top-level COPYRIGHT file for details.
.. Copyright Spack Project Developers. See COPYRIGHT file for details.
SPDX-License-Identifier: (Apache-2.0 OR MIT)

View File

@@ -1,5 +1,4 @@
.. Copyright 2013-2024 Lawrence Livermore National Security, LLC and other
Spack Project Developers. See the top-level COPYRIGHT file for details.
.. Copyright Spack Project Developers. See COPYRIGHT file for details.
SPDX-License-Identifier: (Apache-2.0 OR MIT)

View File

@@ -1,5 +1,4 @@
.. Copyright 2013-2024 Lawrence Livermore National Security, LLC and other
Spack Project Developers. See the top-level COPYRIGHT file for details.
.. Copyright Spack Project Developers. See COPYRIGHT file for details.
SPDX-License-Identifier: (Apache-2.0 OR MIT)

View File

@@ -1,5 +1,4 @@
.. Copyright 2013-2024 Lawrence Livermore National Security, LLC and other
Spack Project Developers. See the top-level COPYRIGHT file for details.
.. Copyright Spack Project Developers. See COPYRIGHT file for details.
SPDX-License-Identifier: (Apache-2.0 OR MIT)

View File

@@ -1,5 +1,4 @@
.. Copyright 2013-2024 Lawrence Livermore National Security, LLC and other
Spack Project Developers. See the top-level COPYRIGHT file for details.
.. Copyright Spack Project Developers. See COPYRIGHT file for details.
SPDX-License-Identifier: (Apache-2.0 OR MIT)

View File

@@ -1,5 +1,4 @@
.. Copyright 2013-2024 Lawrence Livermore National Security, LLC and other
Spack Project Developers. See the top-level COPYRIGHT file for details.
.. Copyright Spack Project Developers. See COPYRIGHT file for details.
SPDX-License-Identifier: (Apache-2.0 OR MIT)

View File

@@ -1,5 +1,4 @@
.. Copyright 2013-2024 Lawrence Livermore National Security, LLC and other
Spack Project Developers. See the top-level COPYRIGHT file for details.
.. Copyright Spack Project Developers. See COPYRIGHT file for details.
SPDX-License-Identifier: (Apache-2.0 OR MIT)

View File

@@ -1,5 +1,4 @@
.. Copyright 2013-2024 Lawrence Livermore National Security, LLC and other
Spack Project Developers. See the top-level COPYRIGHT file for details.
.. Copyright Spack Project Developers. See COPYRIGHT file for details.
SPDX-License-Identifier: (Apache-2.0 OR MIT)

View File

@@ -1,5 +1,4 @@
.. Copyright 2013-2024 Lawrence Livermore National Security, LLC and other
Spack Project Developers. See the top-level COPYRIGHT file for details.
.. Copyright Spack Project Developers. See COPYRIGHT file for details.
SPDX-License-Identifier: (Apache-2.0 OR MIT)

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@@ -1,5 +1,4 @@
.. Copyright 2013-2024 Lawrence Livermore National Security, LLC and other
Spack Project Developers. See the top-level COPYRIGHT file for details.
.. Copyright Spack Project Developers. See COPYRIGHT file for details.
SPDX-License-Identifier: (Apache-2.0 OR MIT)

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@@ -1,5 +1,4 @@
.. Copyright 2013-2024 Lawrence Livermore National Security, LLC and other
Spack Project Developers. See the top-level COPYRIGHT file for details.
.. Copyright Spack Project Developers. See COPYRIGHT file for details.
SPDX-License-Identifier: (Apache-2.0 OR MIT)

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@@ -1,5 +1,4 @@
.. Copyright 2013-2024 Lawrence Livermore National Security, LLC and other
Spack Project Developers. See the top-level COPYRIGHT file for details.
.. Copyright Spack Project Developers. See COPYRIGHT file for details.
SPDX-License-Identifier: (Apache-2.0 OR MIT)

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@@ -1,5 +1,4 @@
.. Copyright 2013-2024 Lawrence Livermore National Security, LLC and other
Spack Project Developers. See the top-level COPYRIGHT file for details.
.. Copyright Spack Project Developers. See COPYRIGHT file for details.
SPDX-License-Identifier: (Apache-2.0 OR MIT)

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@@ -1,5 +1,4 @@
.. Copyright 2013-2024 Lawrence Livermore National Security, LLC and other
Spack Project Developers. See the top-level COPYRIGHT file for details.
.. Copyright Spack Project Developers. See COPYRIGHT file for details.
SPDX-License-Identifier: (Apache-2.0 OR MIT)

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@@ -1,5 +1,4 @@
.. Copyright 2013-2024 Lawrence Livermore National Security, LLC and other
Spack Project Developers. See the top-level COPYRIGHT file for details.
.. Copyright Spack Project Developers. See COPYRIGHT file for details.
SPDX-License-Identifier: (Apache-2.0 OR MIT)

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@@ -1,5 +1,4 @@
.. Copyright 2013-2024 Lawrence Livermore National Security, LLC and other
Spack Project Developers. See the top-level COPYRIGHT file for details.
.. Copyright Spack Project Developers. See COPYRIGHT file for details.
SPDX-License-Identifier: (Apache-2.0 OR MIT)

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@@ -1,5 +1,4 @@
.. Copyright 2013-2024 Lawrence Livermore National Security, LLC and other
Spack Project Developers. See the top-level COPYRIGHT file for details.
.. Copyright Spack Project Developers. See COPYRIGHT file for details.
SPDX-License-Identifier: (Apache-2.0 OR MIT)

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@@ -1,5 +1,4 @@
.. Copyright 2013-2024 Lawrence Livermore National Security, LLC and other
Spack Project Developers. See the top-level COPYRIGHT file for details.
.. Copyright Spack Project Developers. See COPYRIGHT file for details.
SPDX-License-Identifier: (Apache-2.0 OR MIT)

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@@ -1,5 +1,4 @@
.. Copyright 2013-2024 Lawrence Livermore National Security, LLC and other
Spack Project Developers. See the top-level COPYRIGHT file for details.
.. Copyright Spack Project Developers. See COPYRIGHT file for details.
SPDX-License-Identifier: (Apache-2.0 OR MIT)

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@@ -1,5 +1,4 @@
.. Copyright 2013-2024 Lawrence Livermore National Security, LLC and other
Spack Project Developers. See the top-level COPYRIGHT file for details.
.. Copyright Spack Project Developers. See COPYRIGHT file for details.
SPDX-License-Identifier: (Apache-2.0 OR MIT)

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@@ -1,5 +1,4 @@
.. Copyright 2013-2024 Lawrence Livermore National Security, LLC and other
Spack Project Developers. See the top-level COPYRIGHT file for details.
.. Copyright Spack Project Developers. See COPYRIGHT file for details.
SPDX-License-Identifier: (Apache-2.0 OR MIT)

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@@ -1,5 +1,4 @@
.. Copyright 2013-2024 Lawrence Livermore National Security, LLC and other
Spack Project Developers. See the top-level COPYRIGHT file for details.
.. Copyright Spack Project Developers. See COPYRIGHT file for details.
SPDX-License-Identifier: (Apache-2.0 OR MIT)

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@@ -1,5 +1,4 @@
.. Copyright 2013-2024 Lawrence Livermore National Security, LLC and other
Spack Project Developers. See the top-level COPYRIGHT file for details.
.. Copyright Spack Project Developers. See COPYRIGHT file for details.
SPDX-License-Identifier: (Apache-2.0 OR MIT)

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@@ -1,5 +1,4 @@
# Copyright 2013-2024 Lawrence Livermore National Security, LLC and other
# Spack Project Developers. See the top-level COPYRIGHT file for details.
# Copyright Spack Project Developers. See COPYRIGHT file for details.
#
# SPDX-License-Identifier: (Apache-2.0 OR MIT)

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@@ -1,5 +1,4 @@
.. Copyright 2013-2024 Lawrence Livermore National Security, LLC and other
Spack Project Developers. See the top-level COPYRIGHT file for details.
.. Copyright Spack Project Developers. See COPYRIGHT file for details.
SPDX-License-Identifier: (Apache-2.0 OR MIT)
@@ -26,14 +25,23 @@ These settings can be overridden in ``etc/spack/config.yaml`` or
The location where Spack will install packages and their dependencies.
Default is ``$spack/opt/spack``.
---------------------------------------------------
``install_hash_length`` and ``install_path_scheme``
---------------------------------------------------
---------------
``projections``
---------------
The default Spack installation path can be very long and can create problems
for scripts with hardcoded shebangs. Additionally, when using the Intel
compiler, and if there is also a long list of dependencies, the compiler may
segfault. If you see the following:
.. warning::
Modifying projections of the install tree is strongly discouraged.
By default Spack installs all packages into a unique directory relative to the install
tree root with the following layout:
.. code-block::
{architecture}/{compiler.name}-{compiler.version}/{name}-{version}-{hash}
In very rare cases, it may be necessary to reduce the length of this path. For example,
very old versions of the Intel compiler are known to segfault when input paths are too long:
.. code-block:: console
@@ -41,36 +49,25 @@ segfault. If you see the following:
** Segmentation violation signal raised. **
Access violation or stack overflow. Please contact Intel Support for assistance.
it may be because variables containing dependency specs may be too long. There
are two parameters to help with long path names. Firstly, the
``install_hash_length`` parameter can set the length of the hash in the
installation path from 1 to 32. The default path uses the full 32 characters.
Another case is Python and R packages with many runtime dependencies, which can result
in very large ``PYTHONPATH`` and ``R_LIBS`` environment variables. This can cause the
``execve`` system call to fail with ``E2BIG``, preventing processes from starting.
Secondly, it is also possible to modify the entire installation
scheme. By default Spack uses
``{architecture}/{compiler.name}-{compiler.version}/{name}-{version}-{hash}``
where the tokens that are available for use in this directive are the
same as those understood by the :meth:`~spack.spec.Spec.format`
method. Using this parameter it is possible to use a different package
layout or reduce the depth of the installation paths. For example
For this reason, Spack allows users to modify the installation layout through custom
projections. For example
.. code-block:: yaml
config:
install_path_scheme: '{name}/{version}/{hash:7}'
install_tree:
root: $spack/opt/spack
projections:
all: "{name}/{version}/{hash:16}"
would install packages into sub-directories using only the package
name, version and a hash length of 7 characters.
would install packages into sub-directories using only the package name, version and a
hash length of 16 characters.
When using either parameter to set the hash length it only affects the
representation of the hash in the installation directory. You
should be aware that the smaller the hash length the more likely
naming conflicts will occur. These parameters are independent of those
used to configure module names.
.. warning:: Modifying the installation hash length or path scheme after
packages have been installed will prevent Spack from being
able to find the old installation directories.
Notice that reducing the hash length increases the likelihood of hash collisions.
--------------------
``build_stage``

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@@ -1,5 +1,4 @@
.. Copyright 2013-2024 Lawrence Livermore National Security, LLC and other
Spack Project Developers. See the top-level COPYRIGHT file for details.
.. Copyright Spack Project Developers. See COPYRIGHT file for details.
SPDX-License-Identifier: (Apache-2.0 OR MIT)

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@@ -1,5 +1,4 @@
.. Copyright 2013-2024 Lawrence Livermore National Security, LLC and other
Spack Project Developers. See the top-level COPYRIGHT file for details.
.. Copyright Spack Project Developers. See COPYRIGHT file for details.
SPDX-License-Identifier: (Apache-2.0 OR MIT)

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@@ -1,5 +1,4 @@
.. Copyright 2013-2024 Lawrence Livermore National Security, LLC and other
Spack Project Developers. See the top-level COPYRIGHT file for details.
.. Copyright Spack Project Developers. See COPYRIGHT file for details.
SPDX-License-Identifier: (Apache-2.0 OR MIT)

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@@ -1,5 +1,4 @@
.. Copyright 2013-2024 Lawrence Livermore National Security, LLC and other
Spack Project Developers. See the top-level COPYRIGHT file for details.
.. Copyright Spack Project Developers. See COPYRIGHT file for details.
SPDX-License-Identifier: (Apache-2.0 OR MIT)

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@@ -1,5 +1,4 @@
.. Copyright 2013-2024 Lawrence Livermore National Security, LLC and other
Spack Project Developers. See the top-level COPYRIGHT file for details.
.. Copyright Spack Project Developers. See COPYRIGHT file for details.
SPDX-License-Identifier: (Apache-2.0 OR MIT)

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@@ -1,5 +1,4 @@
.. Copyright 2013-2024 Lawrence Livermore National Security, LLC and other
Spack Project Developers. See the top-level COPYRIGHT file for details.
.. Copyright Spack Project Developers. See COPYRIGHT file for details.
SPDX-License-Identifier: (Apache-2.0 OR MIT)

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@@ -1,5 +1,4 @@
.. Copyright 2013-2024 Lawrence Livermore National Security, LLC and other
Spack Project Developers. See the top-level COPYRIGHT file for details.
.. Copyright Spack Project Developers. See COPYRIGHT file for details.
SPDX-License-Identifier: (Apache-2.0 OR MIT)

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@@ -1,5 +1,4 @@
.. Copyright 2013-2024 Lawrence Livermore National Security, LLC and other
Spack Project Developers. See the top-level COPYRIGHT file for details.
.. Copyright Spack Project Developers. See COPYRIGHT file for details.
SPDX-License-Identifier: (Apache-2.0 OR MIT)

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@@ -1,5 +1,4 @@
.. Copyright 2013-2024 Lawrence Livermore National Security, LLC and other
Spack Project Developers. See the top-level COPYRIGHT file for details.
.. Copyright Spack Project Developers. See COPYRIGHT file for details.
SPDX-License-Identifier: (Apache-2.0 OR MIT)
@@ -35,7 +34,7 @@ A build matrix showing which packages are working on which systems is shown belo
.. code-block:: console
apt update
apt install bzip2 ca-certificates file g++ gcc gfortran git gzip lsb-release patch python3 tar unzip xz-utils zstd
apt install bzip2 ca-certificates g++ gcc gfortran git gzip lsb-release patch python3 tar unzip xz-utils zstd
.. tab-item:: RHEL
@@ -148,20 +147,22 @@ The first time you concretize a spec, Spack will bootstrap automatically:
--------------------------------
zlib@1.2.13%gcc@9.4.0+optimize+pic+shared build_system=makefile arch=linux-ubuntu20.04-icelake
The default bootstrap behavior is to use pre-built binaries. You can verify the
active bootstrap repositories with:
.. command-output:: spack bootstrap list
If for security concerns you cannot bootstrap ``clingo`` from pre-built
binaries, you have to disable fetching the binaries we generated with Github Actions.
.. code-block:: console
$ spack bootstrap disable github-actions-v0.4
==> "github-actions-v0.4" is now disabled and will not be used for bootstrapping
$ spack bootstrap disable github-actions-v0.3
==> "github-actions-v0.3" is now disabled and will not be used for bootstrapping
You can verify that the new settings are effective with:
.. command-output:: spack bootstrap list
$ spack bootstrap disable github-actions-v0.6
==> "github-actions-v0.6" is now disabled and will not be used for bootstrapping
$ spack bootstrap disable github-actions-v0.5
==> "github-actions-v0.5" is now disabled and will not be used for bootstrapping
You can verify that the new settings are effective with ``spack bootstrap list``.
.. note::

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@@ -1,5 +1,4 @@
.. Copyright 2013-2024 Lawrence Livermore National Security, LLC and other
Spack Project Developers. See the top-level COPYRIGHT file for details.
.. Copyright Spack Project Developers. See COPYRIGHT file for details.
SPDX-License-Identifier: (Apache-2.0 OR MIT)

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@@ -1,5 +1,4 @@
.. Copyright 2013-2024 Lawrence Livermore National Security, LLC and other
Spack Project Developers. See the top-level COPYRIGHT file for details.
.. Copyright Spack Project Developers. See COPYRIGHT file for details.
SPDX-License-Identifier: (Apache-2.0 OR MIT)

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@@ -1,5 +1,4 @@
.. Copyright 2013-2024 Lawrence Livermore National Security, LLC and other
Spack Project Developers. See the top-level COPYRIGHT file for details.
.. Copyright Spack Project Developers. See COPYRIGHT file for details.
SPDX-License-Identifier: (Apache-2.0 OR MIT)

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@@ -1,5 +1,4 @@
.. Copyright 2013-2024 Lawrence Livermore National Security, LLC and other
Spack Project Developers. See the top-level COPYRIGHT file for details.
.. Copyright Spack Project Developers. See COPYRIGHT file for details.
SPDX-License-Identifier: (Apache-2.0 OR MIT)

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@@ -1,5 +1,4 @@
.. Copyright 2013-2024 Lawrence Livermore National Security, LLC and other
Spack Project Developers. See the top-level COPYRIGHT file for details.
.. Copyright Spack Project Developers. See COPYRIGHT file for details.
SPDX-License-Identifier: (Apache-2.0 OR MIT)

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@@ -1,5 +1,4 @@
.. Copyright 2013-2024 Lawrence Livermore National Security, LLC and other
Spack Project Developers. See the top-level COPYRIGHT file for details.
.. Copyright Spack Project Developers. See COPYRIGHT file for details.
SPDX-License-Identifier: (Apache-2.0 OR MIT)
@@ -237,8 +236,7 @@ for details):
.. code-block:: python
:linenos:
# Copyright 2013-2024 Lawrence Livermore National Security, LLC and other
# Spack Project Developers. See the top-level COPYRIGHT file for details.
# Copyright Spack Project Developers. See COPYRIGHT file for details.
#
# SPDX-License-Identifier: (Apache-2.0 OR MIT)
@@ -4900,15 +4898,15 @@ If your package has a virtual dependency like ``mpi``, then referring to
``spec["mpi"]`` within ``install()`` will get you the concrete ``mpi``
implementation in your dependency DAG. That is a spec object just like
the one passed to install, only the MPI implementations all set some
additional properties on it to help you out. E.g., in mvapich2, you'll
additional properties on it to help you out. E.g., in openmpi, you'll
find this:
.. literalinclude:: _spack_root/var/spack/repos/builtin/packages/mvapich2/package.py
:pyobject: Mvapich2.setup_dependent_package
.. literalinclude:: _spack_root/var/spack/repos/builtin/packages/openmpi/package.py
:pyobject: Openmpi.setup_dependent_package
That code allows the mvapich2 package to associate an ``mpicc`` property
with the ``mvapich2`` node in the DAG, so that dependents can access it.
``openmpi`` and ``mpich`` do similar things. So, no matter what MPI
That code allows the ``openmpi`` package to associate an ``mpicc`` property
with the ``openmpi`` node in the DAG, so that dependents can access it.
``mvapich2`` and ``mpich`` do similar things. So, no matter what MPI
you're using, spec["mpi"].mpicc gets you the location of the MPI
compilers. This allows us to have a fairly simple polymorphic interface
for information about virtual dependencies like MPI.

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@@ -1,5 +1,4 @@
.. Copyright 2013-2024 Lawrence Livermore National Security, LLC and other
Spack Project Developers. See the top-level COPYRIGHT file for details.
.. Copyright Spack Project Developers. See COPYRIGHT file for details.
SPDX-License-Identifier: (Apache-2.0 OR MIT)

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@@ -1,5 +1,4 @@
.. Copyright 2013-2024 Lawrence Livermore National Security, LLC and other
Spack Project Developers. See the top-level COPYRIGHT file for details.
.. Copyright Spack Project Developers. See COPYRIGHT file for details.
SPDX-License-Identifier: (Apache-2.0 OR MIT)

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@@ -1,5 +1,4 @@
.. Copyright 2013-2024 Lawrence Livermore National Security, LLC and other
Spack Project Developers. See the top-level COPYRIGHT file for details.
.. Copyright Spack Project Developers. See COPYRIGHT file for details.
SPDX-License-Identifier: (Apache-2.0 OR MIT)

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@@ -4,8 +4,8 @@ sphinx_design==0.6.1
sphinx-rtd-theme==3.0.2
python-levenshtein==0.26.1
docutils==0.21.2
pygments==2.18.0
urllib3==2.2.3
pygments==2.19.1
urllib3==2.3.0
pytest==8.3.4
isort==5.13.2
black==24.10.0

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@@ -1,5 +1,4 @@
.. Copyright 2013-2024 Lawrence Livermore National Security, LLC and other
Spack Project Developers. See the top-level COPYRIGHT file for details.
.. Copyright Spack Project Developers. See COPYRIGHT file for details.
SPDX-License-Identifier: (Apache-2.0 OR MIT)

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@@ -1,5 +1,4 @@
# Copyright 2013-2024 Lawrence Livermore National Security, LLC and other
# Spack Project Developers. See the top-level COPYRIGHT file for details.
# Copyright Spack Project Developers. See COPYRIGHT file for details.
#
# SPDX-License-Identifier: (Apache-2.0 OR MIT)

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@@ -8,7 +8,6 @@ unzip, , , Compress/Decompress archives
bzip2, , , Compress/Decompress archives
xz, , , Compress/Decompress archives
zstd, , Optional, Compress/Decompress archives
file, , , Create/Use Buildcaches
lsb-release, , , Linux: identify operating system version
gnupg2, , , Sign/Verify Buildcaches
git, , , Manage Software Repositories
1 Name Supported Versions Notes Requirement Reason
8 bzip2 Compress/Decompress archives
9 xz Compress/Decompress archives
10 zstd Optional Compress/Decompress archives
file Create/Use Buildcaches
11 lsb-release Linux: identify operating system version
12 gnupg2 Sign/Verify Buildcaches
13 git Manage Software Repositories

3
lib/spack/env/cc vendored
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@@ -1,8 +1,7 @@
#!/bin/sh -f
# shellcheck disable=SC2034 # evals in this script fool shellcheck
#
# Copyright 2013-2024 Lawrence Livermore National Security, LLC and other
# Spack Project Developers. See the top-level COPYRIGHT file for details.
# Copyright Spack Project Developers. See COPYRIGHT file for details.
#
# SPDX-License-Identifier: (Apache-2.0 OR MIT)

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@@ -1,5 +1,4 @@
# Copyright 2013-2024 Lawrence Livermore National Security, LLC and other
# Spack Project Developers. See the top-level COPYRIGHT file for details.
# Copyright Spack Project Developers. See COPYRIGHT file for details.
#
# SPDX-License-Identifier: (Apache-2.0 OR MIT)

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@@ -1,4 +1,3 @@
# Copyright 2013-2024 Lawrence Livermore National Security, LLC and other
# Spack Project Developers. See the top-level COPYRIGHT file for details.
# Copyright Spack Project Developers. See COPYRIGHT file for details.
#
# SPDX-License-Identifier: (Apache-2.0 OR MIT)

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@@ -1,5 +1,4 @@
# Copyright 2013-2024 Lawrence Livermore National Security, LLC and other
# Spack Project Developers. See the top-level COPYRIGHT file for details.
# Copyright Spack Project Developers. See COPYRIGHT file for details.
#
# SPDX-License-Identifier: (Apache-2.0 OR MIT)
"""Path primitives that just require Python standard library."""

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@@ -1,5 +1,4 @@
# Copyright 2013-2024 Lawrence Livermore National Security, LLC and other
# Spack Project Developers. See the top-level COPYRIGHT file for details.
# Copyright Spack Project Developers. See COPYRIGHT file for details.
#
# SPDX-License-Identifier: (Apache-2.0 OR MIT)
"""String manipulation functions that do not have other dependencies than Python

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@@ -1,5 +1,4 @@
# Copyright 2013-2024 Lawrence Livermore National Security, LLC and other
# Spack Project Developers. See the top-level COPYRIGHT file for details.
# Copyright Spack Project Developers. See COPYRIGHT file for details.
#
# SPDX-License-Identifier: (Apache-2.0 OR MIT)
"""URL primitives that just require Python standard library."""

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@@ -1,4 +1,3 @@
# Copyright 2013-2024 Lawrence Livermore National Security, LLC and other
# Spack Project Developers. See the top-level COPYRIGHT file for details.
# Copyright Spack Project Developers. See COPYRIGHT file for details.
#
# SPDX-License-Identifier: (Apache-2.0 OR MIT)

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@@ -1,5 +1,4 @@
# Copyright 2013-2024 Lawrence Livermore National Security, LLC and other
# Spack Project Developers. See the top-level COPYRIGHT file for details.
# Copyright Spack Project Developers. See COPYRIGHT file for details.
#
# SPDX-License-Identifier: (Apache-2.0 OR MIT)

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@@ -1,5 +1,4 @@
# Copyright 2013-2024 Lawrence Livermore National Security, LLC and other
# Spack Project Developers. See the top-level COPYRIGHT file for details.
# Copyright Spack Project Developers. See COPYRIGHT file for details.
#
# SPDX-License-Identifier: (Apache-2.0 OR MIT)
import collections

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@@ -1,5 +1,4 @@
# Copyright 2013-2024 Lawrence Livermore National Security, LLC and other
# Spack Project Developers. See the top-level COPYRIGHT file for details.
# Copyright Spack Project Developers. See COPYRIGHT file for details.
#
# SPDX-License-Identifier: (Apache-2.0 OR MIT)
@@ -863,8 +862,10 @@ def elide_list(line_list: List[str], max_num: int = 10) -> List[str]:
if sys.version_info >= (3, 9):
PatternStr = re.Pattern[str]
PatternBytes = re.Pattern[bytes]
else:
PatternStr = typing.Pattern[str]
PatternBytes = typing.Pattern[bytes]
def fnmatch_translate_multiple(named_patterns: Dict[str, str]) -> str:

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@@ -1,5 +1,4 @@
# Copyright 2013-2024 Lawrence Livermore National Security, LLC and other
# Spack Project Developers. See the top-level COPYRIGHT file for details.
# Copyright Spack Project Developers. See COPYRIGHT file for details.
#
# SPDX-License-Identifier: (Apache-2.0 OR MIT)

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@@ -1,5 +1,4 @@
# Copyright 2013-2024 Lawrence Livermore National Security, LLC and other
# Spack Project Developers. See the top-level COPYRIGHT file for details.
# Copyright Spack Project Developers. See COPYRIGHT file for details.
#
# SPDX-License-Identifier: (Apache-2.0 OR MIT)

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@@ -1,5 +1,4 @@
# Copyright 2013-2024 Lawrence Livermore National Security, LLC and other
# Spack Project Developers. See the top-level COPYRIGHT file for details.
# Copyright Spack Project Developers. See COPYRIGHT file for details.
#
# SPDX-License-Identifier: (Apache-2.0 OR MIT)

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@@ -1,5 +1,4 @@
# Copyright 2013-2024 Lawrence Livermore National Security, LLC and other
# Spack Project Developers. See the top-level COPYRIGHT file for details.
# Copyright Spack Project Developers. See COPYRIGHT file for details.
#
# SPDX-License-Identifier: (Apache-2.0 OR MIT)
import os

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@@ -1,5 +1,4 @@
# Copyright 2013-2024 Lawrence Livermore National Security, LLC and other
# Spack Project Developers. See the top-level COPYRIGHT file for details.
# Copyright Spack Project Developers. See COPYRIGHT file for details.
#
# SPDX-License-Identifier: (Apache-2.0 OR MIT)

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@@ -1,5 +1,4 @@
# Copyright 2013-2024 Lawrence Livermore National Security, LLC and other
# Spack Project Developers. See the top-level COPYRIGHT file for details.
# Copyright Spack Project Developers. See COPYRIGHT file for details.
#
# SPDX-License-Identifier: (Apache-2.0 OR MIT)

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@@ -1,5 +1,4 @@
# Copyright 2013-2024 Lawrence Livermore National Security, LLC and other
# Spack Project Developers. See the top-level COPYRIGHT file for details.
# Copyright Spack Project Developers. See COPYRIGHT file for details.
#
# SPDX-License-Identifier: (Apache-2.0 OR MIT)

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@@ -1,5 +1,4 @@
# Copyright 2013-2024 Lawrence Livermore National Security, LLC and other
# Spack Project Developers. See the top-level COPYRIGHT file for details.
# Copyright Spack Project Developers. See COPYRIGHT file for details.
#
# SPDX-License-Identifier: (Apache-2.0 OR MIT)

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@@ -1,5 +1,4 @@
# Copyright 2013-2024 Lawrence Livermore National Security, LLC and other
# Spack Project Developers. See the top-level COPYRIGHT file for details.
# Copyright Spack Project Developers. See COPYRIGHT file for details.
#
# SPDX-License-Identifier: (Apache-2.0 OR MIT)

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@@ -1,5 +1,4 @@
# Copyright 2013-2024 Lawrence Livermore National Security, LLC and other
# Spack Project Developers. See the top-level COPYRIGHT file for details.
# Copyright Spack Project Developers. See COPYRIGHT file for details.
#
# SPDX-License-Identifier: (Apache-2.0 OR MIT)

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@@ -1,5 +1,4 @@
# Copyright 2013-2024 Lawrence Livermore National Security, LLC and other
# Spack Project Developers. See the top-level COPYRIGHT file for details.
# Copyright Spack Project Developers. See COPYRIGHT file for details.
#
# SPDX-License-Identifier: (Apache-2.0 OR MIT)
"""Classes and functions to register audit checks for various parts of

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@@ -1,5 +1,4 @@
# Copyright 2013-2024 Lawrence Livermore National Security, LLC and other
# Spack Project Developers. See the top-level COPYRIGHT file for details.
# Copyright Spack Project Developers. See COPYRIGHT file for details.
#
# SPDX-License-Identifier: (Apache-2.0 OR MIT)
@@ -24,13 +23,12 @@
import urllib.request
import warnings
from contextlib import closing
from typing import Dict, Iterable, List, NamedTuple, Optional, Set, Tuple, Union
from typing import IO, Dict, Iterable, List, NamedTuple, Optional, Set, Tuple, Union
import llnl.util.filesystem as fsys
import llnl.util.lang
import llnl.util.tty as tty
from llnl.util.filesystem import BaseDirectoryVisitor, mkdirp, visit_directory_tree
from llnl.util.symlink import readlink
from llnl.util.filesystem import mkdirp
import spack.caches
import spack.config as config
@@ -54,7 +52,6 @@
import spack.util.archive
import spack.util.crypto
import spack.util.file_cache as file_cache
import spack.util.filesystem as ssys
import spack.util.gpg
import spack.util.parallel
import spack.util.path
@@ -587,129 +584,11 @@ def read_buildinfo_file(prefix):
return syaml.load(f)
class BuildManifestVisitor(BaseDirectoryVisitor):
"""Visitor that collects a list of files and symlinks
that can be checked for need of relocation. It knows how
to dedupe hardlinks and deal with symlinks to files and
directories."""
def __init__(self):
# Save unique identifiers of hardlinks to avoid relocating them multiple times
self.visited = set()
# Lists of files we will check
self.files = []
self.symlinks = []
def seen_before(self, root, rel_path):
stat_result = os.lstat(os.path.join(root, rel_path))
if stat_result.st_nlink == 1:
return False
identifier = (stat_result.st_dev, stat_result.st_ino)
if identifier in self.visited:
return True
else:
self.visited.add(identifier)
return False
def visit_file(self, root, rel_path, depth):
if self.seen_before(root, rel_path):
return
self.files.append(rel_path)
def visit_symlinked_file(self, root, rel_path, depth):
# Note: symlinks *can* be hardlinked, but it is unclear if
# symlinks can be relinked in-place (preserving inode).
# Therefore, we do *not* de-dupe hardlinked symlinks.
self.symlinks.append(rel_path)
def before_visit_dir(self, root, rel_path, depth):
return os.path.basename(rel_path) not in (".spack", "man")
def before_visit_symlinked_dir(self, root, rel_path, depth):
# Treat symlinked directories simply as symlinks.
self.visit_symlinked_file(root, rel_path, depth)
# Never recurse into symlinked directories.
return False
def file_matches(path, regex):
with open(path, "rb") as f:
contents = f.read()
return bool(regex.search(contents))
def get_buildfile_manifest(spec):
"""
Return a data structure with information about a build, including
text_to_relocate, binary_to_relocate, binary_to_relocate_fullpath
link_to_relocate, and other, which means it doesn't fit any of previous
checks (and should not be relocated). We exclude docs (man) and
metadata (.spack). This can be used to find a particular kind of file
in spack, or to generate the build metadata.
"""
data = {
"text_to_relocate": [],
"binary_to_relocate": [],
"link_to_relocate": [],
"other": [],
"binary_to_relocate_fullpath": [],
"hardlinks_deduped": True,
}
# Guard against filesystem footguns of hardlinks and symlinks by using
# a visitor to retrieve a list of files and symlinks, so we don't have
# to worry about hardlinks of symlinked dirs and what not.
visitor = BuildManifestVisitor()
root = spec.prefix
visit_directory_tree(root, visitor)
# Collect a list of prefixes for this package and it's dependencies, Spack will
# look for them to decide if text file needs to be relocated or not
prefixes = [d.prefix for d in spec.traverse(root=True, deptype="all") if not d.external]
prefixes.append(spack.hooks.sbang.sbang_install_path())
prefixes.append(str(spack.store.STORE.layout.root))
# Create a giant regex that matches all prefixes
regex = utf8_paths_to_single_binary_regex(prefixes)
# Symlinks.
# Obvious bugs:
# 1. relative links are not relocated.
# 2. paths are used as strings.
for rel_path in visitor.symlinks:
abs_path = os.path.join(root, rel_path)
link = readlink(abs_path)
if os.path.isabs(link) and link.startswith(spack.store.STORE.layout.root):
data["link_to_relocate"].append(rel_path)
# Non-symlinks.
for rel_path in visitor.files:
abs_path = os.path.join(root, rel_path)
m_type, m_subtype = ssys.mime_type(abs_path)
if relocate.needs_binary_relocation(m_type, m_subtype):
# Why is this branch not part of needs_binary_relocation? :(
if (
(
m_subtype in ("x-executable", "x-sharedlib", "x-pie-executable")
and sys.platform != "darwin"
)
or (m_subtype in ("x-mach-binary") and sys.platform == "darwin")
or (not rel_path.endswith(".o"))
):
data["binary_to_relocate"].append(rel_path)
data["binary_to_relocate_fullpath"].append(abs_path)
continue
elif relocate.needs_text_relocation(m_type, m_subtype) and file_matches(abs_path, regex):
data["text_to_relocate"].append(rel_path)
continue
data["other"].append(abs_path)
return data
def file_matches(f: IO[bytes], regex: llnl.util.lang.PatternBytes) -> bool:
try:
return bool(regex.search(f.read()))
finally:
f.seek(0)
def deps_to_relocate(spec):
@@ -742,17 +621,15 @@ def deps_to_relocate(spec):
def get_buildinfo_dict(spec):
"""Create metadata for a tarball"""
manifest = get_buildfile_manifest(spec)
return {
"sbang_install_path": spack.hooks.sbang.sbang_install_path(),
"buildpath": spack.store.STORE.layout.root,
"spackprefix": spack.paths.prefix,
"relative_prefix": os.path.relpath(spec.prefix, spack.store.STORE.layout.root),
"relocate_textfiles": manifest["text_to_relocate"],
"relocate_binaries": manifest["binary_to_relocate"],
"relocate_links": manifest["link_to_relocate"],
"hardlinks_deduped": manifest["hardlinks_deduped"],
# "relocate_textfiles": [],
# "relocate_binaries": [],
# "relocate_links": [],
"hardlinks_deduped": True,
"hash_to_prefix": {d.dag_hash(): str(d.prefix) for d in deps_to_relocate(spec)},
}
@@ -1042,7 +919,55 @@ def generate_key_index(key_prefix: str, tmpdir: str) -> None:
) from e
def tarfile_of_spec_prefix(tar: tarfile.TarFile, prefix: str) -> None:
class FileTypes:
BINARY = 0
TEXT = 1
UNKNOWN = 2
NOT_ISO8859_1_TEXT = re.compile(b"[\x00\x7F-\x9F]")
def file_type(f: IO[bytes]) -> int:
try:
# first check if this is an ELF or mach-o binary.
magic = f.read(8)
if len(magic) < 8:
return FileTypes.UNKNOWN
elif relocate.is_elf_magic(magic) or relocate.is_macho_magic(magic):
return FileTypes.BINARY
f.seek(0)
# Then try utf-8, which has a fast exponential decay in false positive rate with file size.
# Use chunked reads for fast early exit.
f_txt = io.TextIOWrapper(f, encoding="utf-8", errors="strict")
try:
while f_txt.read(1024):
pass
return FileTypes.TEXT
except UnicodeError:
f_txt.seek(0)
pass
finally:
f_txt.detach()
# Finally try iso-8859-1 heuristically. In Python, all possible 256 byte values are valid.
# We classify it as text if it does not contain any control characters / null bytes.
data = f.read(1024)
while data:
if NOT_ISO8859_1_TEXT.search(data):
break
data = f.read(1024)
else:
return FileTypes.TEXT
return FileTypes.UNKNOWN
finally:
f.seek(0)
def tarfile_of_spec_prefix(
tar: tarfile.TarFile, prefix: str, prefixes_to_relocate: List[str]
) -> dict:
"""Create a tarfile of an install prefix of a spec. Skips existing buildinfo file.
Args:
@@ -1058,6 +983,33 @@ def tarfile_of_spec_prefix(tar: tarfile.TarFile, prefix: str) -> None:
except OSError:
skip = lambda entry: False
binary_regex = utf8_paths_to_single_binary_regex(prefixes_to_relocate)
relocate_binaries = []
relocate_links = []
relocate_textfiles = []
# use callbacks to add files and symlinks, so we can register which files need relocation upon
# extraction.
def add_file(tar: tarfile.TarFile, info: tarfile.TarInfo, path: str):
with open(path, "rb") as f:
relpath = os.path.relpath(path, prefix)
# no need to relocate anything in the .spack directory
if relpath.split(os.sep, 1)[0] == ".spack":
tar.addfile(info, f)
return
f_type = file_type(f)
if f_type == FileTypes.BINARY:
relocate_binaries.append(os.path.relpath(path, prefix))
elif f_type == FileTypes.TEXT and file_matches(f, binary_regex):
relocate_textfiles.append(os.path.relpath(path, prefix))
tar.addfile(info, f)
def add_symlink(tar: tarfile.TarFile, info: tarfile.TarInfo, path: str):
if os.path.isabs(info.linkname) and binary_regex.match(info.linkname.encode("utf-8")):
relocate_links.append(os.path.relpath(path, prefix))
tar.addfile(info)
spack.util.archive.reproducible_tarfile_from_prefix(
tar,
prefix,
@@ -1065,29 +1017,51 @@ def tarfile_of_spec_prefix(tar: tarfile.TarFile, prefix: str) -> None:
# used in runtimes like AWS lambda.
include_parent_directories=True,
skip=skip,
add_file=add_file,
add_symlink=add_symlink,
)
return {
"relocate_binaries": relocate_binaries,
"relocate_links": relocate_links,
"relocate_textfiles": relocate_textfiles,
}
def create_tarball(spec: spack.spec.Spec, tarfile_path: str) -> Tuple[str, str]:
"""Create a tarball of a spec and return the checksums of the compressed tarfile and the
uncompressed tarfile."""
return _do_create_tarball(
tarfile_path,
spec.prefix,
buildinfo=get_buildinfo_dict(spec),
prefixes_to_relocate=prefixes_to_relocate(spec),
)
def _do_create_tarball(tarfile_path: str, binaries_dir: str, buildinfo: dict):
def _do_create_tarball(
tarfile_path: str, prefix: str, buildinfo: dict, prefixes_to_relocate: List[str]
) -> Tuple[str, str]:
with spack.util.archive.gzip_compressed_tarfile(tarfile_path) as (
tar,
inner_checksum,
outer_checksum,
tar_gz_checksum,
tar_checksum,
):
# Tarball the install prefix
tarfile_of_spec_prefix(tar, binaries_dir)
files_to_relocate = tarfile_of_spec_prefix(tar, prefix, prefixes_to_relocate)
buildinfo.update(files_to_relocate)
# Serialize buildinfo for the tarball
bstring = syaml.dump(buildinfo, default_flow_style=True).encode("utf-8")
tarinfo = tarfile.TarInfo(
name=spack.util.archive.default_path_to_name(buildinfo_file_name(binaries_dir))
name=spack.util.archive.default_path_to_name(buildinfo_file_name(prefix))
)
tarinfo.type = tarfile.REGTYPE
tarinfo.size = len(bstring)
tarinfo.mode = 0o644
tar.addfile(tarinfo, io.BytesIO(bstring))
return inner_checksum.hexdigest(), outer_checksum.hexdigest()
return tar_gz_checksum.hexdigest(), tar_checksum.hexdigest()
class ExistsInBuildcache(NamedTuple):
@@ -1137,6 +1111,13 @@ def _exists_in_buildcache(spec: spack.spec.Spec, tmpdir: str, out_url: str) -> E
return ExistsInBuildcache(signed, unsigned, tarball)
def prefixes_to_relocate(spec):
prefixes = [s.prefix for s in deps_to_relocate(spec)]
prefixes.append(spack.hooks.sbang.sbang_install_path())
prefixes.append(str(spack.store.STORE.layout.root))
return prefixes
def _url_upload_tarball_and_specfile(
spec: spack.spec.Spec,
tmpdir: str,
@@ -1146,7 +1127,7 @@ def _url_upload_tarball_and_specfile(
):
files = BuildcacheFiles(spec, tmpdir, out_url)
tarball = files.local_tarball()
checksum, _ = _do_create_tarball(tarball, spec.prefix, get_buildinfo_dict(spec))
checksum, _ = create_tarball(spec, tarball)
spec_dict = spec.to_dict(hash=ht.dag_hash)
spec_dict["buildcache_layout_version"] = CURRENT_BUILD_CACHE_LAYOUT_VERSION
spec_dict["binary_cache_checksum"] = {"hash_algorithm": "sha256", "hash": checksum}
@@ -1470,13 +1451,11 @@ def _oci_push_pkg_blob(
filename = os.path.join(tmpdir, f"{spec.dag_hash()}.tar.gz")
# Create an oci.image.layer aka tarball of the package
compressed_tarfile_checksum, tarfile_checksum = _do_create_tarball(
filename, spec.prefix, get_buildinfo_dict(spec)
)
tar_gz_checksum, tar_checksum = create_tarball(spec, filename)
blob = spack.oci.oci.Blob(
Digest.from_sha256(compressed_tarfile_checksum),
Digest.from_sha256(tarfile_checksum),
Digest.from_sha256(tar_gz_checksum),
Digest.from_sha256(tar_checksum),
os.path.getsize(filename),
)
@@ -2435,6 +2414,14 @@ def _tar_strip_component(tar: tarfile.TarFile, prefix: str):
yield m
def extract_buildcache_tarball(tarfile_path: str, destination: str) -> None:
with closing(tarfile.open(tarfile_path, "r")) as tar:
# Remove common prefix from tarball entries and directly extract them to the install dir.
tar.extractall(
path=destination, members=_tar_strip_component(tar, prefix=_ensure_common_prefix(tar))
)
def extract_tarball(spec, download_result, force=False, timer=timer.NULL_TIMER):
"""
extract binary tarball for given package into install area
@@ -2504,12 +2491,7 @@ def extract_tarball(spec, download_result, force=False, timer=timer.NULL_TIMER):
tarfile_path, size, contents, "sha256", expected, local_checksum
)
try:
with closing(tarfile.open(tarfile_path, "r")) as tar:
# Remove install prefix from tarfil to extract directly into spec.prefix
tar.extractall(
path=spec.prefix,
members=_tar_strip_component(tar, prefix=_ensure_common_prefix(tar)),
)
extract_buildcache_tarball(tarfile_path, destination=spec.prefix)
except Exception:
shutil.rmtree(spec.prefix, ignore_errors=True)
_delete_staged_downloads(download_result)

View File

@@ -1,5 +1,4 @@
# Copyright 2013-2024 Lawrence Livermore National Security, LLC and other
# Spack Project Developers. See the top-level COPYRIGHT file for details.
# Copyright Spack Project Developers. See COPYRIGHT file for details.
#
# SPDX-License-Identifier: (Apache-2.0 OR MIT)
"""Function and classes needed to bootstrap Spack itself."""
@@ -9,7 +8,6 @@
all_core_root_specs,
ensure_clingo_importable_or_raise,
ensure_core_dependencies,
ensure_file_in_path_or_raise,
ensure_gpg_in_path_or_raise,
ensure_patchelf_in_path_or_raise,
)
@@ -20,7 +18,6 @@
"is_bootstrapping",
"ensure_bootstrap_configuration",
"ensure_core_dependencies",
"ensure_file_in_path_or_raise",
"ensure_gpg_in_path_or_raise",
"ensure_clingo_importable_or_raise",
"ensure_patchelf_in_path_or_raise",

View File

@@ -1,5 +1,4 @@
# Copyright 2013-2024 Lawrence Livermore National Security, LLC and other
# Spack Project Developers. See the top-level COPYRIGHT file for details.
# Copyright Spack Project Developers. See COPYRIGHT file for details.
#
# SPDX-License-Identifier: (Apache-2.0 OR MIT)
"""Common basic functions used through the spack.bootstrap package"""

View File

@@ -1,5 +1,4 @@
# Copyright 2013-2024 Lawrence Livermore National Security, LLC and other
# Spack Project Developers. See the top-level COPYRIGHT file for details.
# Copyright Spack Project Developers. See COPYRIGHT file for details.
#
# SPDX-License-Identifier: (Apache-2.0 OR MIT)
"""Bootstrap concrete specs for clingo

View File

@@ -1,5 +1,4 @@
# Copyright 2013-2024 Lawrence Livermore National Security, LLC and other
# Spack Project Developers. See the top-level COPYRIGHT file for details.
# Copyright Spack Project Developers. See COPYRIGHT file for details.
#
# SPDX-License-Identifier: (Apache-2.0 OR MIT)
"""Manage configuration swapping for bootstrapping purposes"""

View File

@@ -1,5 +1,4 @@
# Copyright 2013-2024 Lawrence Livermore National Security, LLC and other
# Spack Project Developers. See the top-level COPYRIGHT file for details.
# Copyright Spack Project Developers. See COPYRIGHT file for details.
#
# SPDX-License-Identifier: (Apache-2.0 OR MIT)
"""Bootstrap Spack core dependencies from binaries.
@@ -481,19 +480,6 @@ def ensure_gpg_in_path_or_raise() -> None:
)
def file_root_spec() -> str:
"""Return the root spec used to bootstrap file"""
root_spec_name = "win-file" if IS_WINDOWS else "file"
return _root_spec(root_spec_name)
def ensure_file_in_path_or_raise() -> None:
"""Ensure file is in the PATH or raise"""
return ensure_executables_in_path_or_raise(
executables=["file"], abstract_spec=file_root_spec()
)
def patchelf_root_spec() -> str:
"""Return the root spec used to bootstrap patchelf"""
# 0.13.1 is the last version not to require C++17.
@@ -562,10 +548,9 @@ def ensure_winsdk_external_or_raise() -> None:
missing_packages_lst.append("win-sdk")
missing_packages = " & ".join(missing_packages_lst)
raise RuntimeError(
f"Unable to find the {missing_packages}, please install these packages \
via the Visual Studio installer \
before proceeding with Spack or provide the path to a non standard install with \
'spack external find --path'"
f"Unable to find the {missing_packages}, please install these packages via the Visual "
"Studio installer before proceeding with Spack or provide the path to a non standard "
"install with 'spack external find --path'"
)
# wgl/sdk are not required for bootstrapping Spack, but
# are required for building anything non trivial
@@ -577,15 +562,13 @@ def ensure_core_dependencies() -> None:
"""Ensure the presence of all the core dependencies."""
if sys.platform.lower() == "linux":
ensure_patchelf_in_path_or_raise()
elif sys.platform == "win32":
ensure_file_in_path_or_raise()
ensure_gpg_in_path_or_raise()
ensure_clingo_importable_or_raise()
def all_core_root_specs() -> List[str]:
"""Return a list of all the core root specs that may be used to bootstrap Spack"""
return [clingo_root_spec(), gnupg_root_spec(), patchelf_root_spec(), file_root_spec()]
return [clingo_root_spec(), gnupg_root_spec(), patchelf_root_spec()]
def bootstrapping_sources(scope: Optional[str] = None):

View File

@@ -1,5 +1,4 @@
# Copyright 2013-2024 Lawrence Livermore National Security, LLC and other
# Spack Project Developers. See the top-level COPYRIGHT file for details.
# Copyright Spack Project Developers. See COPYRIGHT file for details.
#
# SPDX-License-Identifier: (Apache-2.0 OR MIT)
"""Bootstrap non-core Spack dependencies from an environment."""

View File

@@ -1,10 +1,9 @@
# Copyright 2013-2024 Lawrence Livermore National Security, LLC and other
# Spack Project Developers. See the top-level COPYRIGHT file for details.
# Copyright Spack Project Developers. See COPYRIGHT file for details.
#
# SPDX-License-Identifier: (Apache-2.0 OR MIT)
"""Query the status of bootstrapping on this machine"""
import platform
from typing import List, Optional, Sequence, Tuple, Union
import sys
from typing import Dict, List, Optional, Sequence, Tuple, Union
import spack.util.executable
@@ -72,7 +71,7 @@ def _core_requirements() -> List[RequiredResponseType]:
"bzip2": _missing("bzip2", "required to compress/decompress code archives"),
"git": _missing("git", "required to fetch/manage git repositories"),
}
if platform.system().lower() == "linux":
if sys.platform == "linux":
_core_system_exes["xz"] = _missing("xz", "required to compress/decompress code archives")
# Executables that are not bootstrapped yet
@@ -87,17 +86,16 @@ def _core_requirements() -> List[RequiredResponseType]:
def _buildcache_requirements() -> List[RequiredResponseType]:
_buildcache_exes = {
"file": _missing("file", "required to analyze files for buildcaches", system_only=False),
("gpg2", "gpg"): _missing("gpg2", "required to sign/verify buildcaches", False),
_buildcache_exes: Dict[ExecutablesType, str] = {
("gpg2", "gpg"): _missing("gpg2", "required to sign/verify buildcaches", False)
}
if platform.system().lower() == "darwin":
if sys.platform == "darwin":
_buildcache_exes["otool"] = _missing("otool", "required to relocate binaries")
# Executables that are not bootstrapped yet
result = [_required_system_executable(exe, msg) for exe, msg in _buildcache_exes.items()]
if platform.system().lower() == "linux":
if sys.platform == "linux":
result.append(
_required_executable(
"patchelf",

View File

@@ -1,5 +1,4 @@
# Copyright 2013-2024 Lawrence Livermore National Security, LLC and other
# Spack Project Developers. See the top-level COPYRIGHT file for details.
# Copyright Spack Project Developers. See COPYRIGHT file for details.
#
# SPDX-License-Identifier: (Apache-2.0 OR MIT)
@@ -924,7 +923,9 @@ def effective_deptypes(
in reverse so that dependents override dependencies, not the other way around."""
topo_sorted_edges = traverse.traverse_topo_edges_generator(
traverse.with_artificial_edges(specs),
visitor=EnvironmentVisitor(*specs, context=context),
visitor=traverse.CoverEdgesVisitor(
EnvironmentVisitor(*specs, context=context), key=traverse.by_dag_hash
),
key=traverse.by_dag_hash,
root=True,
all_edges=True,

View File

@@ -1,4 +1,3 @@
# Copyright 2013-2024 Lawrence Livermore National Security, LLC and other
# Spack Project Developers. See the top-level COPYRIGHT file for details.
# Copyright Spack Project Developers. See COPYRIGHT file for details.
#
# SPDX-License-Identifier: (Apache-2.0 OR MIT)

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