Add Pyomo 6.7.2 (#44097)

* Address #44253 by adding new versions and declaring conflicts for perl-xml-libxml

* [@spackbot] updating style on behalf of teaguesterling

* Update var/spack/repos/builtin/packages/perl-xml-libxml/package.py

Co-authored-by: Wouter Deconinck <wdconinc@gmail.com>

---------

Co-authored-by: Wouter Deconinck <wdconinc@gmail.com>

.github/workflows/audit.yaml

@@ -17,33 +17,51 @@ concurrency:
 jobs:
   # Run audits on all the packages in the built-in repository
   package-audits:
-    runs-on: ${{ matrix.operating_system }}
+    runs-on: ${{ matrix.system.os }}
     strategy:
       matrix:
-        operating_system: ["ubuntu-latest", "macos-latest"]
+        system:
+        - { os: windows-latest, shell: 'powershell Invoke-Expression -Command "./share/spack/qa/windows_test_setup.ps1"; {0}' }
+        - { os: ubuntu-latest, shell: bash }
+        - { os: macos-latest, shell: bash }
+    defaults:
+      run:
+        shell: ${{ matrix.system.shell }}
     steps:
-    - uses: actions/checkout@9bb56186c3b09b4f86b1c65136769dd318469633
+    - uses: actions/checkout@a5ac7e51b41094c92402da3b24376905380afc29
     - uses: actions/setup-python@82c7e631bb3cdc910f68e0081d67478d79c6982d
       with:
         python-version: ${{inputs.python_version}}
     - name: Install Python packages
       run: |
         pip install --upgrade pip setuptools pytest coverage[toml]
+    - name: Setup for Windows run
+      if: runner.os == 'Windows'
+      run: |
+        python -m pip install --upgrade pywin32
     - name: Package audits (with coverage)
-      if: ${{ inputs.with_coverage == 'true' }}
+      if: ${{ inputs.with_coverage == 'true' && runner.os != 'Windows' }}
       run: |
           . share/spack/setup-env.sh
           coverage run $(which spack) audit packages
-          coverage run $(which spack) audit externals        
+          coverage run $(which spack) -d audit externals
           coverage combine
           coverage xml
     - name: Package audits (without coverage)
-      if: ${{ inputs.with_coverage == 'false' }}
+      if: ${{ inputs.with_coverage == 'false' && runner.os != 'Windows' }}
       run: |
-          . share/spack/setup-env.sh
-          $(which spack) audit packages
-          $(which spack) audit externals
-    - uses: codecov/codecov-action@c16abc29c95fcf9174b58eb7e1abf4c866893bc8
+          . share/spack/setup-env.sh          
+          spack -d audit packages
+          spack -d audit externals
+    - name: Package audits (without coverage)
+      if: ${{ runner.os == 'Windows' }}
+      run: |
+          . share/spack/setup-env.sh          
+          spack -d audit packages
+          ./share/spack/qa/validate_last_exit.ps1
+          spack -d audit externals
+          ./share/spack/qa/validate_last_exit.ps1
+    - uses: codecov/codecov-action@6d798873df2b1b8e5846dba6fb86631229fbcb17
       if: ${{ inputs.with_coverage == 'true' }}
       with:
         flags: unittests,audits

.github/workflows/bootstrap-test.sh

@@ -1,7 +1,8 @@
 #!/bin/bash
-set -ex
+set -e
 source share/spack/setup-env.sh
+$PYTHON bin/spack bootstrap disable github-actions-v0.4
 $PYTHON bin/spack bootstrap disable spack-install
-$PYTHON bin/spack -d solve zlib
+$PYTHON bin/spack $SPACK_FLAGS solve zlib
 tree $BOOTSTRAP/store
 exit 0

.github/workflows/bootstrap.yml

@@ -13,118 +13,22 @@ concurrency:
   cancel-in-progress: true
 
 jobs:
-  fedora-clingo-sources:
+  distros-clingo-sources:
     runs-on: ubuntu-latest
-    container: "fedora:latest"
+    container: ${{ matrix.image }}
+    strategy:
+      matrix:
+        image: ["fedora:latest", "opensuse/leap:latest"]
     steps:
-      - name: Install dependencies
+      - name: Setup Fedora
+        if: ${{ matrix.image == 'fedora:latest' }}
         run: |
           dnf install -y \
-              bzip2 curl file gcc-c++ gcc gcc-gfortran git gnupg2 gzip \
+              bzip2 curl file gcc-c++ gcc gcc-gfortran git gzip \
               make patch unzip which xz python3 python3-devel tree \
               cmake bison bison-devel libstdc++-static
-      - name: Checkout
-        uses: actions/checkout@9bb56186c3b09b4f86b1c65136769dd318469633
-        with:
-          fetch-depth: 0
-      - name: Setup non-root user
-        run: |
-          # See [1] below
-          git config --global --add safe.directory /__w/spack/spack
-          useradd spack-test && mkdir -p ~spack-test
-          chown -R spack-test . ~spack-test
-      - name: Setup repo
-        shell: runuser -u spack-test -- bash {0}
-        run: |
-          git --version
-          . .github/workflows/setup_git.sh
-      - name: Bootstrap clingo
-        shell: runuser -u spack-test -- bash {0}
-        run: |
-          source share/spack/setup-env.sh
-          spack bootstrap disable github-actions-v0.5
-          spack bootstrap disable github-actions-v0.4
-          spack external find cmake bison
-          spack -d solve zlib
-          tree ~/.spack/bootstrap/store/
-
-  ubuntu-clingo-sources:
-    runs-on: ubuntu-latest
-    container: "ubuntu:latest"
-    steps:
-      - name: Install dependencies
-        env:
-          DEBIAN_FRONTEND: noninteractive
-        run: |
-          apt-get update -y && apt-get upgrade -y
-          apt-get install -y \
-              bzip2 curl file g++ gcc gfortran git gnupg2 gzip \
-              make patch unzip xz-utils python3 python3-dev tree \
-              cmake bison
-      - name: Checkout
-        uses: actions/checkout@9bb56186c3b09b4f86b1c65136769dd318469633
-        with:
-          fetch-depth: 0
-      - name: Setup non-root user
-        run: |
-          # See [1] below
-          git config --global --add safe.directory /__w/spack/spack
-          useradd spack-test && mkdir -p ~spack-test
-          chown -R spack-test . ~spack-test
-      - name: Setup repo
-        shell: runuser -u spack-test -- bash {0}
-        run: |
-          git --version
-          . .github/workflows/setup_git.sh
-      - name: Bootstrap clingo
-        shell: runuser -u spack-test -- bash {0}
-        run: |
-          source share/spack/setup-env.sh
-          spack bootstrap disable github-actions-v0.5
-          spack bootstrap disable github-actions-v0.4
-          spack external find cmake bison
-          spack -d solve zlib
-          tree ~/.spack/bootstrap/store/
-
-  ubuntu-clingo-binaries-and-patchelf:
-    runs-on: ubuntu-latest
-    container: "ubuntu:latest"
-    steps:
-      - name: Install dependencies
-        env:
-          DEBIAN_FRONTEND: noninteractive
-        run: |
-          apt-get update -y && apt-get upgrade -y
-          apt-get install -y \
-              bzip2 curl file g++ gcc gfortran git gnupg2 gzip \
-              make patch unzip xz-utils python3 python3-dev tree
-      - name: Checkout
-        uses: actions/checkout@9bb56186c3b09b4f86b1c65136769dd318469633
-        with:
-          fetch-depth: 0
-      - name: Setup non-root user
-        run: |
-          # See [1] below
-          git config --global --add safe.directory /__w/spack/spack
-          useradd spack-test && mkdir -p ~spack-test
-          chown -R spack-test . ~spack-test
-      - name: Setup repo
-        shell: runuser -u spack-test -- bash {0}
-        run: |
-          git --version
-          . .github/workflows/setup_git.sh
-      - name: Bootstrap clingo
-        shell: runuser -u spack-test -- bash {0}
-        run: |
-          source share/spack/setup-env.sh
-          spack -d solve zlib
-          tree ~/.spack/bootstrap/store/
-
-  opensuse-clingo-sources:
-    runs-on: ubuntu-latest
-    container: "opensuse/leap:latest"
-    steps:
-      - name: Install dependencies
+      - name: Setup OpenSUSE
+        if: ${{ matrix.image == 'opensuse/leap:latest' }}
         run: |
           # Harden CI by applying the workaround described here: https://www.suse.com/support/kb/doc/?id=000019505
           zypper update -y || zypper update -y
@@ -133,15 +37,9 @@ jobs:
               make patch unzip which xz python3 python3-devel tree \
               cmake bison
       - name: Checkout
-        uses: actions/checkout@9bb56186c3b09b4f86b1c65136769dd318469633
+        uses: actions/checkout@a5ac7e51b41094c92402da3b24376905380afc29
         with:
           fetch-depth: 0
-      - name: Setup repo
-        run: |
-          # See [1] below
-          git config --global --add safe.directory /__w/spack/spack
-          git --version
-          . .github/workflows/setup_git.sh
       - name: Bootstrap clingo
         run: |
           source share/spack/setup-env.sh
@@ -151,77 +49,102 @@ jobs:
           spack -d solve zlib
           tree ~/.spack/bootstrap/store/
 
-  macos-clingo-sources:
-    runs-on: macos-latest
+  clingo-sources:
+    runs-on: ${{ matrix.runner }}
+    strategy:
+      matrix:
+        runner: ['macos-13', 'macos-14', "ubuntu-latest"]
     steps:
-      - name: Install dependencies
+      - name: Setup macOS
+        if: ${{ matrix.runner != 'ubuntu-latest' }}
         run: |
-          brew install cmake bison@2.7 tree
+          brew install cmake bison tree
       - name: Checkout
-        uses: actions/checkout@9bb56186c3b09b4f86b1c65136769dd318469633
+        uses: actions/checkout@a5ac7e51b41094c92402da3b24376905380afc29
+        with:
+          fetch-depth: 0
       - uses: actions/setup-python@82c7e631bb3cdc910f68e0081d67478d79c6982d
         with:
           python-version: "3.12"
       - name: Bootstrap clingo
         run: |
           source share/spack/setup-env.sh
-          export PATH=/usr/local/opt/bison@2.7/bin:$PATH
           spack bootstrap disable github-actions-v0.5
           spack bootstrap disable github-actions-v0.4
           spack external find --not-buildable cmake bison
           spack -d solve zlib
           tree ~/.spack/bootstrap/store/
 
-  macos-clingo-binaries:
-    runs-on: ${{ matrix.macos-version }}
+  gnupg-sources:
+    runs-on: ${{ matrix.runner }}
     strategy:
       matrix:
-        macos-version: ['macos-11', 'macos-12']
+        runner: [ 'macos-13', 'macos-14', "ubuntu-latest" ]
     steps:
-      - name: Install dependencies
+      - name: Setup macOS
+        if: ${{ matrix.runner != 'ubuntu-latest' }}
         run: |
           brew install tree
-      - name: Checkout
-        uses: actions/checkout@9bb56186c3b09b4f86b1c65136769dd318469633
-      - name: Bootstrap clingo
+          # Remove GnuPG since we want to bootstrap it
+          sudo rm -rf /usr/local/bin/gpg
+      - name: Setup Ubuntu
+        if: ${{ matrix.runner == 'ubuntu-latest' }}
         run: |
-          set -ex
-          for ver in '3.7' '3.8' '3.9' '3.10' '3.11' ; do
-            not_found=1
-            ver_dir="$(find $RUNNER_TOOL_CACHE/Python -wholename "*/${ver}.*/*/bin" | grep . || true)"
-            echo "Testing $ver_dir"
-            if [[ -d "$ver_dir" ]] ; then
-              if $ver_dir/python --version ; then
-                export PYTHON="$ver_dir/python"
-                not_found=0
-                old_path="$PATH"
-                export PATH="$ver_dir:$PATH"
-                ./bin/spack-tmpconfig -b ./.github/workflows/bootstrap-test.sh
-                export PATH="$old_path"
-              fi
-            fi
-            # NOTE: test all pythons that exist, not all do on 12
-          done
-
-  ubuntu-clingo-binaries:
-    runs-on: ubuntu-20.04
-    steps:
+          sudo rm -rf $(which gpg) $(which gpg2) $(which patchelf)
       - name: Checkout
-        uses: actions/checkout@9bb56186c3b09b4f86b1c65136769dd318469633
+        uses: actions/checkout@a5ac7e51b41094c92402da3b24376905380afc29
         with:
           fetch-depth: 0
-      - name: Setup repo
+      - name: Bootstrap GnuPG
         run: |
-          git --version
-          . .github/workflows/setup_git.sh
+          source share/spack/setup-env.sh
+          spack solve zlib
+          spack bootstrap disable github-actions-v0.5
+          spack bootstrap disable github-actions-v0.4
+          spack -d gpg list
+          tree ~/.spack/bootstrap/store/
+
+  from-binaries:
+    runs-on: ${{ matrix.runner }}
+    strategy:
+      matrix:
+        runner: ['macos-13', 'macos-14', "ubuntu-latest"]
+    steps:
+      - name: Setup macOS
+        if: ${{ matrix.runner != 'ubuntu-latest' }}
+        run: |
+          brew install tree
+          # Remove GnuPG since we want to bootstrap it
+          sudo rm -rf /usr/local/bin/gpg
+      - name: Setup Ubuntu
+        if: ${{ matrix.runner == 'ubuntu-latest' }}
+        run: |
+          sudo rm -rf $(which gpg) $(which gpg2) $(which patchelf)
+      - name: Checkout
+        uses: actions/checkout@a5ac7e51b41094c92402da3b24376905380afc29
+        with:
+          fetch-depth: 0
+      - uses: actions/setup-python@82c7e631bb3cdc910f68e0081d67478d79c6982d
+        with:
+          python-version: |
+            3.8
+            3.9
+            3.10
+            3.11
+            3.12
+      - name: Set bootstrap sources
+        run: |
+          source share/spack/setup-env.sh
+          spack bootstrap disable github-actions-v0.4
+          spack bootstrap disable spack-install
       - name: Bootstrap clingo
         run: |
-          set -ex
-          for ver in '3.7' '3.8' '3.9' '3.10' '3.11' ; do
+          set -e
+          for ver in '3.8' '3.9' '3.10' '3.11' '3.12' ; do
             not_found=1
             ver_dir="$(find $RUNNER_TOOL_CACHE/Python -wholename "*/${ver}.*/*/bin" | grep . || true)"
-            echo "Testing $ver_dir"
             if [[ -d "$ver_dir" ]] ; then
+              echo "Testing $ver_dir"
               if $ver_dir/python --version ; then
                 export PYTHON="$ver_dir/python"
                 not_found=0
@@ -236,122 +159,9 @@ jobs:
               exit 1
             fi
           done
-
-  ubuntu-gnupg-binaries:
-    runs-on: ubuntu-latest
-    container: "ubuntu:latest"
-    steps:
-      - name: Install dependencies
-        env:
-          DEBIAN_FRONTEND: noninteractive
-        run: |
-          apt-get update -y && apt-get upgrade -y
-          apt-get install -y \
-              bzip2 curl file g++ gcc patchelf gfortran git gzip \
-              make patch unzip xz-utils python3 python3-dev tree
-      - name: Checkout
-        uses: actions/checkout@9bb56186c3b09b4f86b1c65136769dd318469633
-        with:
-          fetch-depth: 0
-      - name: Setup non-root user
-        run: |
-          # See [1] below
-          git config --global --add safe.directory /__w/spack/spack
-          useradd spack-test && mkdir -p ~spack-test
-          chown -R spack-test . ~spack-test
-      - name: Setup repo
-        shell: runuser -u spack-test -- bash {0}
-        run: |
-          git --version
-          . .github/workflows/setup_git.sh
-      - name: Bootstrap GnuPG
-        shell: runuser -u spack-test -- bash {0}
-        run: |
-          source share/spack/setup-env.sh
-          spack bootstrap disable github-actions-v0.4
-          spack bootstrap disable spack-install
-          spack -d gpg list
-          tree ~/.spack/bootstrap/store/
-
-  ubuntu-gnupg-sources:
-    runs-on: ubuntu-latest
-    container: "ubuntu:latest"
-    steps:
-      - name: Install dependencies
-        env:
-          DEBIAN_FRONTEND: noninteractive
-        run: |
-          apt-get update -y && apt-get upgrade -y
-          apt-get install -y \
-              bzip2 curl file g++ gcc patchelf gfortran git gzip \
-              make patch unzip xz-utils python3 python3-dev tree \
-              gawk
-      - name: Checkout
-        uses: actions/checkout@9bb56186c3b09b4f86b1c65136769dd318469633
-        with:
-          fetch-depth: 0
-      - name: Setup non-root user
-        run: |
-          # See [1] below
-          git config --global --add safe.directory /__w/spack/spack
-          useradd spack-test && mkdir -p ~spack-test
-          chown -R spack-test . ~spack-test
-      - name: Setup repo
-        shell: runuser -u spack-test -- bash {0}
-        run: |
-          git --version
-          . .github/workflows/setup_git.sh
-      - name: Bootstrap GnuPG
-        shell: runuser -u spack-test -- bash {0}
-        run: |
-          source share/spack/setup-env.sh
-          spack solve zlib
-          spack bootstrap disable github-actions-v0.5
-          spack bootstrap disable github-actions-v0.4
-          spack -d gpg list
-          tree ~/.spack/bootstrap/store/
-
-  macos-gnupg-binaries:
-    runs-on: macos-latest
-    steps:
-      - name: Install dependencies
-        run: |
-          brew install tree
-          # Remove GnuPG since we want to bootstrap it
-          sudo rm -rf /usr/local/bin/gpg
-      - name: Checkout
-        uses: actions/checkout@9bb56186c3b09b4f86b1c65136769dd318469633
       - name: Bootstrap GnuPG
         run: |
           source share/spack/setup-env.sh
-          spack bootstrap disable github-actions-v0.4
-          spack bootstrap disable spack-install
           spack -d gpg list
           tree ~/.spack/bootstrap/store/
 
-  macos-gnupg-sources:
-    runs-on: macos-latest
-    steps:
-      - name: Install dependencies
-        run: |
-          brew install gawk tree
-          # Remove GnuPG since we want to bootstrap it
-          sudo rm -rf /usr/local/bin/gpg
-      - name: Checkout
-        uses: actions/checkout@9bb56186c3b09b4f86b1c65136769dd318469633
-      - name: Bootstrap GnuPG
-        run: |
-          source share/spack/setup-env.sh
-          spack solve zlib
-          spack bootstrap disable github-actions-v0.5
-          spack bootstrap disable github-actions-v0.4
-          spack -d gpg list
-          tree ~/.spack/bootstrap/store/
-
-
-# [1] Distros that have patched git to resolve CVE-2022-24765 (e.g. Ubuntu patching v2.25.1)
-#     introduce breaking behaviorso we have to set `safe.directory` in gitconfig ourselves.
-#     See:
-#     - https://github.blog/2022-04-12-git-security-vulnerability-announced/
-#     - https://github.com/actions/checkout/issues/760
-#     - http://changelogs.ubuntu.com/changelogs/pool/main/g/git/git_2.25.1-1ubuntu3.3/changelog

.github/workflows/build-containers.yml

@@ -45,17 +45,18 @@ jobs:
                      [leap15, 'linux/amd64,linux/arm64,linux/ppc64le', 'opensuse/leap:15'],
                      [ubuntu-focal, 'linux/amd64,linux/arm64,linux/ppc64le', 'ubuntu:20.04'],
                      [ubuntu-jammy, 'linux/amd64,linux/arm64,linux/ppc64le', 'ubuntu:22.04'],
+                     [ubuntu-noble, 'linux/amd64,linux/arm64,linux/ppc64le', 'ubuntu:24.04'],
                      [almalinux8, 'linux/amd64,linux/arm64,linux/ppc64le', 'almalinux:8'],
                      [almalinux9, 'linux/amd64,linux/arm64,linux/ppc64le', 'almalinux:9'],
                      [rockylinux8, 'linux/amd64,linux/arm64', 'rockylinux:8'],
                      [rockylinux9, 'linux/amd64,linux/arm64', 'rockylinux:9'],
-                     [fedora37, 'linux/amd64,linux/arm64,linux/ppc64le', 'fedora:37'],
-                     [fedora38, 'linux/amd64,linux/arm64,linux/ppc64le', 'fedora:38']]
+                     [fedora39, 'linux/amd64,linux/arm64,linux/ppc64le', 'fedora:39'],
+                     [fedora40, 'linux/amd64,linux/arm64,linux/ppc64le', 'fedora:40']]
     name: Build ${{ matrix.dockerfile[0] }}
     if: github.repository == 'spack/spack'
     steps:
       - name: Checkout
-        uses: actions/checkout@9bb56186c3b09b4f86b1c65136769dd318469633
+        uses: actions/checkout@a5ac7e51b41094c92402da3b24376905380afc29
 
       - uses: docker/metadata-action@8e5442c4ef9f78752691e2d8f8d19755c6f78e81
         id: docker_meta
@@ -87,16 +88,16 @@ jobs:
           fi
 
       - name: Upload Dockerfile
-        uses: actions/upload-artifact@a8a3f3ad30e3422c9c7b888a15615d19a852ae32
+        uses: actions/upload-artifact@65462800fd760344b1a7b4382951275a0abb4808
         with:
-          name: dockerfiles
+          name: dockerfiles_${{ matrix.dockerfile[0] }}
           path: dockerfiles
 
       - name: Set up QEMU
         uses: docker/setup-qemu-action@68827325e0b33c7199eb31dd4e31fbe9023e06e3
 
       - name: Set up Docker Buildx
-        uses: docker/setup-buildx-action@2b51285047da1547ffb1b2203d8be4c0af6b1f20
+        uses: docker/setup-buildx-action@d70bba72b1f3fd22344832f00baa16ece964efeb
 
       - name: Log in to GitHub Container Registry
         uses: docker/login-action@e92390c5fb421da1463c202d546fed0ec5c39f20
@@ -120,3 +121,14 @@ jobs:
           push: ${{ github.event_name != 'pull_request' }}
           tags: ${{ steps.docker_meta.outputs.tags }}
           labels: ${{ steps.docker_meta.outputs.labels }}
+
+  merge-dockerfiles:
+    runs-on: ubuntu-latest
+    needs: deploy-images
+    steps:
+      - name: Merge Artifacts
+        uses: actions/upload-artifact/merge@65462800fd760344b1a7b4382951275a0abb4808
+        with:
+          name: dockerfiles
+          pattern: dockerfiles_*
+          delete-merged: true

.github/workflows/ci.yaml

@@ -36,7 +36,7 @@ jobs:
       core: ${{ steps.filter.outputs.core }}
       packages: ${{ steps.filter.outputs.packages }}
     steps:
-      - uses: actions/checkout@9bb56186c3b09b4f86b1c65136769dd318469633
+      - uses: actions/checkout@a5ac7e51b41094c92402da3b24376905380afc29
         if: ${{ github.event_name == 'push' }}
         with:
           fetch-depth: 0

.github/workflows/nightly-win-builds.yml

@@ -14,7 +14,7 @@ jobs:
   build-paraview-deps:
     runs-on: windows-latest
     steps:
-    - uses: actions/checkout@9bb56186c3b09b4f86b1c65136769dd318469633
+    - uses: actions/checkout@a5ac7e51b41094c92402da3b24376905380afc29
       with:
         fetch-depth: 0
     - uses: actions/setup-python@82c7e631bb3cdc910f68e0081d67478d79c6982d

.github/workflows/style/requirements.txt

@@ -1,4 +1,4 @@
-black==24.3.0
+black==24.4.2
 clingo==5.7.1
 flake8==7.0.0
 isort==5.13.2

.github/workflows/unit_tests.yaml

@@ -51,7 +51,7 @@ jobs:
           on_develop: false
 
     steps:
-    - uses: actions/checkout@9bb56186c3b09b4f86b1c65136769dd318469633
+    - uses: actions/checkout@a5ac7e51b41094c92402da3b24376905380afc29
       with:
         fetch-depth: 0
     - uses: actions/setup-python@82c7e631bb3cdc910f68e0081d67478d79c6982d
@@ -91,7 +91,7 @@ jobs:
           UNIT_TEST_COVERAGE: ${{ matrix.python-version == '3.11' }}
       run: |
           share/spack/qa/run-unit-tests
-    - uses: codecov/codecov-action@c16abc29c95fcf9174b58eb7e1abf4c866893bc8
+    - uses: codecov/codecov-action@6d798873df2b1b8e5846dba6fb86631229fbcb17
       with:
         flags: unittests,linux,${{ matrix.concretizer }}
         token: ${{ secrets.CODECOV_TOKEN }}
@@ -100,7 +100,7 @@ jobs:
   shell:
     runs-on: ubuntu-latest
     steps:
-    - uses: actions/checkout@9bb56186c3b09b4f86b1c65136769dd318469633
+    - uses: actions/checkout@a5ac7e51b41094c92402da3b24376905380afc29
       with:
         fetch-depth: 0
     - uses: actions/setup-python@82c7e631bb3cdc910f68e0081d67478d79c6982d
@@ -124,7 +124,7 @@ jobs:
           COVERAGE: true
       run: |
           share/spack/qa/run-shell-tests
-    - uses: codecov/codecov-action@c16abc29c95fcf9174b58eb7e1abf4c866893bc8
+    - uses: codecov/codecov-action@6d798873df2b1b8e5846dba6fb86631229fbcb17
       with:
         flags: shelltests,linux
         token: ${{ secrets.CODECOV_TOKEN }}
@@ -141,7 +141,7 @@ jobs:
           dnf install -y \
               bzip2 curl file gcc-c++ gcc gcc-gfortran git gnupg2 gzip \
               make patch tcl unzip which xz
-    - uses: actions/checkout@9bb56186c3b09b4f86b1c65136769dd318469633
+    - uses: actions/checkout@a5ac7e51b41094c92402da3b24376905380afc29
     - name: Setup repo and non-root user
       run: |
           git --version
@@ -160,7 +160,7 @@ jobs:
   clingo-cffi:
     runs-on: ubuntu-latest
     steps:
-    - uses: actions/checkout@9bb56186c3b09b4f86b1c65136769dd318469633
+    - uses: actions/checkout@a5ac7e51b41094c92402da3b24376905380afc29
       with:
         fetch-depth: 0
     - uses: actions/setup-python@82c7e631bb3cdc910f68e0081d67478d79c6982d
@@ -185,7 +185,7 @@ jobs:
           SPACK_TEST_SOLVER: clingo
       run: |
           share/spack/qa/run-unit-tests
-    - uses: codecov/codecov-action@c16abc29c95fcf9174b58eb7e1abf4c866893bc8
+    - uses: codecov/codecov-action@6d798873df2b1b8e5846dba6fb86631229fbcb17
       with:
         flags: unittests,linux,clingo
         token: ${{ secrets.CODECOV_TOKEN }}
@@ -195,10 +195,10 @@ jobs:
     runs-on: ${{ matrix.os }}
     strategy:
       matrix:
-        os: [macos-latest, macos-14]
+        os: [macos-13, macos-14]
         python-version: ["3.11"]
     steps:
-    - uses: actions/checkout@9bb56186c3b09b4f86b1c65136769dd318469633
+    - uses: actions/checkout@a5ac7e51b41094c92402da3b24376905380afc29
       with:
         fetch-depth: 0
     - uses: actions/setup-python@82c7e631bb3cdc910f68e0081d67478d79c6982d
@@ -223,7 +223,7 @@ jobs:
         $(which spack) solve zlib
         common_args=(--dist loadfile --tx '4*popen//python=./bin/spack-tmpconfig python -u ./bin/spack python' -x)
         $(which spack) unit-test --verbose --cov --cov-config=pyproject.toml --cov-report=xml:coverage.xml "${common_args[@]}"
-    - uses: codecov/codecov-action@c16abc29c95fcf9174b58eb7e1abf4c866893bc8
+    - uses: codecov/codecov-action@6d798873df2b1b8e5846dba6fb86631229fbcb17
       with:
         flags: unittests,macos
         token: ${{ secrets.CODECOV_TOKEN }}

.github/workflows/valid-style.yml

@@ -18,7 +18,7 @@ jobs:
   validate:
     runs-on: ubuntu-latest
     steps:
-    - uses: actions/checkout@9bb56186c3b09b4f86b1c65136769dd318469633
+    - uses: actions/checkout@a5ac7e51b41094c92402da3b24376905380afc29
     - uses: actions/setup-python@82c7e631bb3cdc910f68e0081d67478d79c6982d
       with:
         python-version: '3.11'
@@ -35,7 +35,7 @@ jobs:
   style:
     runs-on: ubuntu-latest
     steps:
-    - uses: actions/checkout@9bb56186c3b09b4f86b1c65136769dd318469633
+    - uses: actions/checkout@a5ac7e51b41094c92402da3b24376905380afc29
       with:
         fetch-depth: 0
     - uses: actions/setup-python@82c7e631bb3cdc910f68e0081d67478d79c6982d
@@ -70,7 +70,7 @@ jobs:
           dnf install -y \
               bzip2 curl file gcc-c++ gcc gcc-gfortran git gnupg2 gzip \
               make patch tcl unzip which xz
-      - uses: actions/checkout@9bb56186c3b09b4f86b1c65136769dd318469633
+      - uses: actions/checkout@a5ac7e51b41094c92402da3b24376905380afc29
       - name: Setup repo and non-root user
         run: |
           git --version

.github/workflows/windows_python.yml

@@ -15,7 +15,7 @@ jobs:
   unit-tests:
     runs-on: windows-latest
     steps:
-    - uses: actions/checkout@9bb56186c3b09b4f86b1c65136769dd318469633
+    - uses: actions/checkout@a5ac7e51b41094c92402da3b24376905380afc29
       with:
         fetch-depth: 0
     - uses: actions/setup-python@82c7e631bb3cdc910f68e0081d67478d79c6982d
@@ -33,7 +33,7 @@ jobs:
         ./share/spack/qa/validate_last_exit.ps1
         coverage combine -a
         coverage xml
-    - uses: codecov/codecov-action@c16abc29c95fcf9174b58eb7e1abf4c866893bc8
+    - uses: codecov/codecov-action@6d798873df2b1b8e5846dba6fb86631229fbcb17
       with:
         flags: unittests,windows
         token: ${{ secrets.CODECOV_TOKEN }}
@@ -41,7 +41,7 @@ jobs:
   unit-tests-cmd:
     runs-on: windows-latest
     steps:
-    - uses: actions/checkout@9bb56186c3b09b4f86b1c65136769dd318469633
+    - uses: actions/checkout@a5ac7e51b41094c92402da3b24376905380afc29
       with:
         fetch-depth: 0
     - uses: actions/setup-python@82c7e631bb3cdc910f68e0081d67478d79c6982d
@@ -59,7 +59,7 @@ jobs:
         ./share/spack/qa/validate_last_exit.ps1
         coverage combine -a
         coverage xml
-    - uses: codecov/codecov-action@c16abc29c95fcf9174b58eb7e1abf4c866893bc8
+    - uses: codecov/codecov-action@6d798873df2b1b8e5846dba6fb86631229fbcb17
       with:
         flags: unittests,windows
         token: ${{ secrets.CODECOV_TOKEN }}
@@ -67,7 +67,7 @@ jobs:
   build-abseil:
     runs-on: windows-latest
     steps:
-    - uses: actions/checkout@9bb56186c3b09b4f86b1c65136769dd318469633
+    - uses: actions/checkout@a5ac7e51b41094c92402da3b24376905380afc29
       with:
         fetch-depth: 0
     - uses: actions/setup-python@82c7e631bb3cdc910f68e0081d67478d79c6982d

CHANGELOG.md

@@ -1,3 +1,48 @@
+# v0.21.2 (2024-03-01)
+
+## Bugfixes
+
+- Containerize: accommodate nested or pre-existing spack-env paths (#41558)
+- Fix setup-env script, when going back and forth between instances (#40924)
+- Fix using fully-qualified namespaces from root specs (#41957)
+- Fix a bug when a required provider is requested for multiple virtuals (#42088)
+- OCI buildcaches:
+  - only push in parallel when forking (#42143)
+  - use pickleable errors (#42160)
+- Fix using sticky variants in externals (#42253)
+- Fix a rare issue with conditional requirements and multi-valued variants (#42566)
+
+## Package updates
+- rust: add v1.75, rework a few variants (#41161,#41903)
+- py-transformers: add v4.35.2 (#41266)
+- mgard: fix OpenMP on AppleClang (#42933)
+
+# v0.21.1 (2024-01-11)
+
+## New features
+- Add support for reading buildcaches created by Spack v0.22 (#41773)
+
+## Bugfixes
+
+- spack graph: fix coloring with environments (#41240)
+- spack info: sort variants in --variants-by-name (#41389)
+- Spec.format: error on old style format strings (#41934)
+- ASP-based solver: 
+  - fix infinite recursion when computing concretization errors (#41061)
+  - don't error for type mismatch on preferences (#41138)
+  - don't emit spurious debug output (#41218)
+- Improve the error message for deprecated preferences (#41075)
+- Fix MSVC preview version breaking clingo build on Windows (#41185)
+- Fix multi-word aliases (#41126)
+- Add a warning for unconfigured compiler (#41213)
+- environment: fix an issue with deconcretization/reconcretization of specs (#41294)
+- buildcache: don't error if a patch is missing, when installing from binaries (#41986)
+- Multiple improvements to unit-tests (#41215,#41369,#41495,#41359,#41361,#41345,#41342,#41308,#41226)
+
+## Package updates
+- root: add a webgui patch to address security issue (#41404)
+- BerkeleyGW: update source urls (#38218)
+
 # v0.21.0 (2023-11-11)
 
 `v0.21.0` is a major feature release.

README.md

@@ -88,7 +88,7 @@ Resources:
   [bridged](https://github.com/matrix-org/matrix-appservice-slack#matrix-appservice-slack) to Slack.
 * [**Github Discussions**](https://github.com/spack/spack/discussions):
   for Q&A and discussions. Note the pinned discussions for announcements.
-* **Twitter**: [@spackpm](https://twitter.com/spackpm). Be sure to
+* **X**: [@spackpm](https://twitter.com/spackpm). Be sure to
   `@mention` us!
 * **Mailing list**: [groups.google.com/d/forum/spack](https://groups.google.com/d/forum/spack):
   only for announcements. Please use other venues for discussions.

bin/spack.ps1

@@ -144,3 +144,5 @@ switch($SpackSubCommand)
     "unload" {Invoke-SpackLoad}
     default  {python "$Env:SPACK_ROOT/bin/spack" $SpackCMD_params $SpackSubCommand $SpackSubCommandArgs}
 }
+
+exit $LASTEXITCODE

etc/spack/defaults/concretizer.yaml

@@ -15,7 +15,7 @@ concretizer:
   # as possible, rather than building. If `false`, we'll always give you a fresh
   # concretization. If `dependencies`, we'll only reuse dependencies but
   # give you a fresh concretization for your root specs.
-  reuse: dependencies
+  reuse: true
   # Options that tune which targets are considered for concretization. The
   # concretization process is very sensitive to the number targets, and the time
   # needed to reach a solution increases noticeably with the number of targets

etc/spack/defaults/cray/packages.yaml

@@ -0,0 +1,19 @@
+# -------------------------------------------------------------------------
+# This file controls default concretization preferences for Spack.
+#
+# Settings here are versioned with Spack and are intended to provide
+# sensible defaults out of the box. Spack maintainers should edit this
+# file to keep it current.
+#
+# Users can override these settings by editing the following files.
+#
+# Per-spack-instance settings (overrides defaults):
+#   $SPACK_ROOT/etc/spack/packages.yaml
+#
+# Per-user settings (overrides default and site settings):
+#   ~/.spack/packages.yaml
+# -------------------------------------------------------------------------
+packages:
+  all:
+    providers:
+      iconv: [glibc, musl, libiconv]

etc/spack/defaults/darwin/packages.yaml

@@ -19,7 +19,6 @@ packages:
     - apple-clang
     - clang
     - gcc
-    - intel
     providers:
       elf: [libelf]
       fuse: [macfuse]

etc/spack/defaults/linux/packages.yaml

@@ -0,0 +1,19 @@
+# -------------------------------------------------------------------------
+# This file controls default concretization preferences for Spack.
+#
+# Settings here are versioned with Spack and are intended to provide
+# sensible defaults out of the box. Spack maintainers should edit this
+# file to keep it current.
+#
+# Users can override these settings by editing the following files.
+#
+# Per-spack-instance settings (overrides defaults):
+#   $SPACK_ROOT/etc/spack/packages.yaml
+#
+# Per-user settings (overrides default and site settings):
+#   ~/.spack/packages.yaml
+# -------------------------------------------------------------------------
+packages:
+  all:
+    providers:
+      iconv: [glibc, musl, libiconv]

etc/spack/defaults/packages.yaml

@@ -15,9 +15,10 @@
 # -------------------------------------------------------------------------
 packages:
   all:
-    compiler: [gcc, intel, pgi, clang, xl, nag, fj, aocc]
+    compiler: [gcc, clang, oneapi, xl, nag, fj, aocc]
     providers:
       awk: [gawk]
+      armci: [armcimpi]
       blas: [openblas, amdblis]
       D: [ldc]
       daal: [intel-oneapi-daal]
@@ -35,6 +36,7 @@ packages:
       java: [openjdk, jdk, ibm-java]
       jpeg: [libjpeg-turbo, libjpeg]
       lapack: [openblas, amdlibflame]
+      libc: [glibc, musl]
       libgfortran: [ gcc-runtime ]
       libglx: [mesa+glx, mesa18+glx]
       libifcore: [ intel-oneapi-runtime ]

lib/spack/docs/_templates/layout.html

@@ -0,0 +1,12 @@
+{% extends "!layout.html" %}
+
+{%- block extrahead %} 
+  <!-- Google tag (gtag.js) -->
+  <script async src="https://www.googletagmanager.com/gtag/js?id=G-S0PQ7WV75K"></script>
+  <script>
+    window.dataLayer = window.dataLayer || [];
+    function gtag(){dataLayer.push(arguments);}
+    gtag('js', new Date());
+    gtag('config', 'G-S0PQ7WV75K');
+  </script>
+{% endblock %}

lib/spack/docs/basic_usage.rst

@@ -865,7 +865,7 @@ There are several different ways to use Spack packages once you have
 installed them. As you've seen, spack packages are installed into long
 paths with hashes, and you need a way to get them into your path. The
 easiest way is to use :ref:`spack load <cmd-spack-load>`, which is
-described in the next section.
+described in this section.
 
 Some more advanced ways to use Spack packages include:
 
@@ -959,7 +959,86 @@ use ``spack find --loaded``.
 You can also use ``spack load --list`` to get the same output, but it
 does not have the full set of query options that ``spack find`` offers.
 
-We'll learn more about Spack's spec syntax in the next section.
+We'll learn more about Spack's spec syntax in :ref:`a later section <sec-specs>`.
+
+
+.. _extensions:
+
+^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
+Python packages and virtual environments
+^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
+
+Spack can install a large number of Python packages. Their names are
+typically prefixed with ``py-``. Installing and using them is no
+different from any other package:
+
+.. code-block:: console
+
+   $ spack install py-numpy
+   $ spack load py-numpy
+   $ python3
+   >>> import numpy
+
+The ``spack load`` command sets the ``PATH`` variable so that the right Python
+executable is used, and makes sure that ``numpy`` and its dependencies can be
+located in the ``PYTHONPATH``.
+
+Spack is different from other Python package managers in that it installs
+every package into its *own* prefix. This is in contrast to ``pip``, which
+installs all packages into the same prefix, be it in a virtual environment
+or not.
+
+For many users, **virtual environments** are more convenient than repeated
+``spack load`` commands, particularly when working with multiple Python
+packages. Fortunately Spack supports environments itself, which together
+with a view are no different from Python virtual environments.
+
+The recommended way of working with Python extensions such as ``py-numpy``
+is through :ref:`Environments <environments>`. The following example creates
+a Spack environment with ``numpy`` in the current working directory. It also
+puts a filesystem view in ``./view``, which is a more traditional combined
+prefix for all packages in the environment.
+
+.. code-block:: console
+
+   $ spack env create --with-view view --dir .
+   $ spack -e . add py-numpy
+   $ spack -e . concretize
+   $ spack -e . install
+
+Now you can activate the environment and start using the packages:
+
+.. code-block:: console
+
+   $ spack env activate .
+   $ python3
+   >>> import numpy
+
+The environment view is also a virtual environment, which is useful if you are
+sharing the environment with others who are unfamiliar with Spack. They can
+either use the Python executable directly:
+
+.. code-block:: console
+
+   $ ./view/bin/python3
+   >>> import numpy
+
+or use the activation script:
+
+.. code-block:: console
+
+   $ source ./view/bin/activate
+   $ python3
+   >>> import numpy
+
+In general, there should not be much difference between ``spack env activate``
+and using the virtual environment. The main advantage of ``spack env activate``
+is that it knows about more packages than just Python packages, and it may set
+additional runtime variables that are not covered by the virtual environment
+activation script.
+
+See :ref:`environments` for a more in-depth description of Spack
+environments and customizations to views.
 
 
 .. _sec-specs:
@@ -1705,165 +1784,6 @@ check only local packages (as opposed to those used transparently from
 ``upstream`` spack instances) and the ``-j,--json`` option to output
 machine-readable json data for any errors.
 
-
-.. _extensions:
-
----------------------------
-Extensions & Python support
----------------------------
-
-Spack's installation model assumes that each package will live in its
-own install prefix.  However, certain packages are typically installed
-*within* the directory hierarchy of other packages.  For example,
-`Python <https://www.python.org>`_ packages are typically installed in the
-``$prefix/lib/python-2.7/site-packages`` directory.
-
-In Spack, installation prefixes are immutable, so this type of installation
-is not directly supported. However, it is possible to create views that
-allow you to merge install prefixes of multiple packages into a single new prefix.
-Views are a convenient way to get a more traditional filesystem structure.
-Using *extensions*, you can ensure that Python packages always share the
-same prefix in the view as Python itself. Suppose you have
-Python installed like so:
-
-.. code-block:: console
-
-   $ spack find python
-   ==> 1 installed packages.
-   -- linux-debian7-x86_64 / gcc@4.4.7 --------------------------------
-   python@2.7.8
-
-.. _cmd-spack-extensions:
-
-^^^^^^^^^^^^^^^^^^^^
-``spack extensions``
-^^^^^^^^^^^^^^^^^^^^
-
-You can find extensions for your Python installation like this:
-
-.. code-block:: console
-
-   $ spack extensions python
-   ==> python@2.7.8%gcc@4.4.7 arch=linux-debian7-x86_64-703c7a96
-   ==> 36 extensions:
-   geos          py-ipython     py-pexpect    py-pyside            py-sip
-   py-basemap    py-libxml2     py-pil        py-pytz              py-six
-   py-biopython  py-mako        py-pmw        py-rpy2              py-sympy
-   py-cython     py-matplotlib  py-pychecker  py-scientificpython  py-virtualenv
-   py-dateutil   py-mpi4py      py-pygments   py-scikit-learn
-   py-epydoc     py-mx          py-pylint     py-scipy
-   py-gnuplot    py-nose        py-pyparsing  py-setuptools
-   py-h5py       py-numpy       py-pyqt       py-shiboken
-
-   ==> 12 installed:
-   -- linux-debian7-x86_64 / gcc@4.4.7 --------------------------------
-   py-dateutil@2.4.0    py-nose@1.3.4       py-pyside@1.2.2
-   py-dateutil@2.4.0    py-numpy@1.9.1      py-pytz@2014.10
-   py-ipython@2.3.1     py-pygments@2.0.1   py-setuptools@11.3.1
-   py-matplotlib@1.4.2  py-pyparsing@2.0.3  py-six@1.9.0
-
-The extensions are a subset of what's returned by ``spack list``, and
-they are packages like any other.  They are installed into their own
-prefixes, and you can see this with ``spack find --paths``:
-
-.. code-block:: console
-
-   $ spack find --paths py-numpy
-   ==> 1 installed packages.
-   -- linux-debian7-x86_64 / gcc@4.4.7 --------------------------------
-       py-numpy@1.9.1  ~/spack/opt/linux-debian7-x86_64/gcc@4.4.7/py-numpy@1.9.1-66733244
-
-However, even though this package is installed, you cannot use it
-directly when you run ``python``:
-
-.. code-block:: console
-
-   $ spack load python
-   $ python
-   Python 2.7.8 (default, Feb 17 2015, 01:35:25)
-   [GCC 4.4.7 20120313 (Red Hat 4.4.7-11)] on linux2
-   Type "help", "copyright", "credits" or "license" for more information.
-   >>> import numpy
-   Traceback (most recent call last):
-     File "<stdin>", line 1, in <module>
-   ImportError: No module named numpy
-   >>>
-
-^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
-Using Extensions in Environments
-^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
-
-The recommended way of working with extensions such as ``py-numpy``
-above is through :ref:`Environments <environments>`. For example,
-the following creates an environment in the current working directory
-with a filesystem view in the ``./view`` directory:
-
-.. code-block:: console
-
-   $ spack env create --with-view view --dir .
-   $ spack -e . add py-numpy
-   $ spack -e . concretize
-   $ spack -e . install
-
-We recommend environments for two reasons. Firstly, environments
-can be activated (requires :ref:`shell-support`):
-
-.. code-block:: console
-
-   $ spack env activate .
-
-which sets all the right environment variables such as ``PATH`` and
-``PYTHONPATH``. This ensures that
-
-.. code-block:: console
-
-   $ python
-   >>> import numpy
-
-works. Secondly, even without shell support, the view ensures
-that Python can locate its extensions:
-
-.. code-block:: console
-
-   $ ./view/bin/python
-   >>> import numpy
-
-See :ref:`environments` for a more in-depth description of Spack
-environments and customizations to views.
-
-^^^^^^^^^^^^^^^^^^^^
-Using ``spack load``
-^^^^^^^^^^^^^^^^^^^^
-
-A more traditional way of using Spack and extensions is ``spack load``
-(requires :ref:`shell-support`). This will add the extension to ``PYTHONPATH``
-in your current shell, and Python itself will be available in the ``PATH``:
-
-.. code-block:: console
-
-   $ spack load py-numpy
-   $ python
-   >>> import numpy
-
-The loaded packages can be checked using ``spack find --loaded``
-
-^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
-Loading Extensions via Modules
-^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
-
-Apart from ``spack env activate`` and ``spack load``, you can load numpy
-through your environment modules (using ``environment-modules`` or
-``lmod``). This will also add the extension to the ``PYTHONPATH`` in
-your current shell.
-
-.. code-block:: console
-
-   $ module load <name of numpy module>
-
-If you do not know the name of the specific numpy module you wish to
-load, you can use the ``spack module tcl|lmod loads`` command to get
-the name of the module from the Spack spec.
-
 -----------------------
 Filesystem requirements
 -----------------------

lib/spack/docs/binary_caches.rst

@@ -220,6 +220,40 @@ section of the configuration:
 
 .. _binary_caches_oci:
 
+---------------------------------
+Automatic push to a build cache
+---------------------------------
+
+Sometimes it is convenient to push packages to a build cache as soon as they are installed. Spack can do this by setting autopush flag when adding a mirror:
+
+.. code-block:: console
+
+    $ spack mirror add --autopush <name> <url or path>
+
+Or the autopush flag can be set for an existing mirror:
+
+.. code-block:: console
+
+    $ spack mirror set --autopush <name>  # enable automatic push for an existing mirror
+    $ spack mirror set --no-autopush <name>  # disable automatic push for an existing mirror
+
+Then after installing a package it is automatically pushed to all mirrors with ``autopush: true``. The command
+
+.. code-block:: console
+
+    $ spack install <package>
+
+will have the same effect as
+
+.. code-block:: console
+
+    $ spack install <package>
+    $ spack buildcache push <cache> <package>  # for all caches with autopush: true
+
+.. note::
+
+    Packages are automatically pushed to a build cache only if they are built from source.
+
 -----------------------------------------
 OCI / Docker V2 registries as build cache
 -----------------------------------------

lib/spack/docs/build_settings.rst

@@ -21,23 +21,86 @@ is the following:
 Reuse already installed packages
 --------------------------------
 
-The ``reuse`` attribute controls whether Spack will prefer to use installed packages (``true``), or
-whether it will do a "fresh" installation and prefer the latest settings from
-``package.py`` files and ``packages.yaml`` (``false``).
-You can use:
+The ``reuse`` attribute controls how aggressively Spack reuses binary packages during concretization. The
+attribute can either be a single value, or an object for more complex configurations.
+
+In the former case ("single value") it allows Spack to:
+
+1. Reuse installed packages and buildcaches for all the specs to be concretized, when ``true``
+2. Reuse installed packages and buildcaches only for the dependencies of the root specs, when ``dependencies``
+3. Disregard reusing installed packages and buildcaches, when ``false``
+
+In case a finer control over which specs are reused is needed, then the value of this attribute can be
+an object, with the following keys:
+
+1. ``roots``: if ``true`` root specs are reused, if ``false`` only dependencies of root specs are reused
+2. ``from``: list of sources from which reused specs are taken
+
+Each source in ``from`` is itself an object:
+
+.. list-table:: Attributes for a source or reusable specs
+   :header-rows: 1
+
+   * - Attribute name
+     - Description
+   * - type (mandatory, string)
+     - Can be ``local``, ``buildcache``, or ``external``
+   * - include (optional, list of specs)
+     - If present, reusable specs must match at least one of the constraint in the list
+   * - exclude (optional, list of specs)
+     - If present, reusable specs must not match any of the constraint in the list.
+
+For instance, the following configuration:
+
+.. code-block:: yaml
+
+   concretizer:
+     reuse:
+       roots: true
+       from:
+       - type: local
+         include:
+         - "%gcc"
+         - "%clang"
+
+tells the concretizer to reuse all specs compiled with either ``gcc`` or ``clang``, that are installed
+in the local store. Any spec from remote buildcaches is disregarded.
+
+To reduce the boilerplate in configuration files, default values for the ``include`` and
+``exclude`` options can be pushed up one level:
+
+.. code-block:: yaml
+
+   concretizer:
+     reuse:
+       roots: true
+       include:
+       - "%gcc"
+       from:
+       - type: local
+       - type: buildcache
+       - type: local
+         include:
+         - "foo %oneapi"
+
+In the example above we reuse all specs compiled with ``gcc`` from the local store
+and remote buildcaches, and we also reuse ``foo %oneapi``. Note that the last source of
+specs override the default ``include`` attribute.
+
+For one-off concretizations, the are command line arguments for each of the simple "single value"
+configurations. This means a user can:
 
 .. code-block:: console
 
    % spack install --reuse <spec>
 
-to enable reuse for a single installation, and you can use:
+to enable reuse for a single installation, or:
 
 .. code-block:: console
 
    spack install --fresh <spec>
 
 to do a fresh install if ``reuse`` is enabled by default.
-``reuse: dependencies`` is the default.
 
 .. seealso::
 

lib/spack/docs/build_systems/autotoolspackage.rst

@@ -147,6 +147,15 @@ example, the ``bash`` shell is used to run the ``autogen.sh`` script.
    def autoreconf(self, spec, prefix):
        which("bash")("autogen.sh")
 
+If the ``package.py`` has build instructions in a separate
+:ref:`builder class <multiple_build_systems>`, the signature for a phase changes slightly:
+
+.. code-block:: python
+
+   class AutotoolsBuilder(AutotoolsBuilder):
+      def autoreconf(self, pkg, spec, prefix):
+         which("bash")("autogen.sh")
+
 """""""""""""""""""""""""""""""""""""""
 patching configure or Makefile.in files
 """""""""""""""""""""""""""""""""""""""

lib/spack/docs/build_systems/inteloneapipackage.rst

@@ -25,7 +25,7 @@ use Spack to build packages with the tools.
 The Spack Python class ``IntelOneapiPackage`` is a base class that is
 used by ``IntelOneapiCompilers``, ``IntelOneapiMkl``,
 ``IntelOneapiTbb`` and other classes to implement the oneAPI
-packages. Search for ``oneAPI`` at `<packages.spack.io>`_ for the full
+packages. Search for ``oneAPI`` at `packages.spack.io <https://packages.spack.io>`_ for the full
 list of available oneAPI packages, or use::
 
   spack list -d oneAPI

lib/spack/docs/build_systems/pythonpackage.rst

@@ -718,23 +718,45 @@ command-line tool, or C/C++/Fortran program with optional Python
 modules? The former should be prepended with ``py-``, while the
 latter should not.
 
-""""""""""""""""""""""
-extends vs. depends_on
-""""""""""""""""""""""
+""""""""""""""""""""""""""""""
+``extends`` vs. ``depends_on``
+""""""""""""""""""""""""""""""
 
-This is very similar to the naming dilemma above, with a slight twist.
 As mentioned in the :ref:`Packaging Guide <packaging_extensions>`,
 ``extends`` and ``depends_on`` are very similar, but ``extends`` ensures
 that the extension and extendee share the same prefix in views.
 This allows the user to import a Python module without
 having to add that module to ``PYTHONPATH``.
 
-When deciding between ``extends`` and ``depends_on``, the best rule of
-thumb is to check the installation prefix. If Python libraries are
-installed to ``<prefix>/lib/pythonX.Y/site-packages``, then you
-should use ``extends``. If Python libraries are installed elsewhere
-or the only files that get installed reside in ``<prefix>/bin``, then
-don't use ``extends``.
+Additionally, ``extends("python")`` adds a dependency on the package
+``python-venv``. This improves isolation from the system, whether
+it's during the build or at runtime: user and system site packages
+cannot accidentally be used by any package that ``extends("python")``.
+
+As a rule of thumb: if a package does not install any Python modules
+of its own, and merely puts a Python script in the ``bin`` directory,
+then there is no need for ``extends``. If the package installs modules
+in the ``site-packages`` directory, it requires ``extends``.
+
+"""""""""""""""""""""""""""""""""""""
+Executing ``python`` during the build
+"""""""""""""""""""""""""""""""""""""
+
+Whenever you need to execute a Python command or pass the path of the
+Python interpreter to the build system, it is best to use the global
+variable ``python`` directly. For example:
+
+.. code-block:: python
+
+    @run_before("install")
+    def recythonize(self):
+        python("setup.py", "clean")  # use the `python` global
+
+As mentioned in the previous section, ``extends("python")`` adds an
+automatic dependency on ``python-venv``, which is a virtual environment
+that guarantees build isolation. The ``python`` global always refers to
+the correct Python interpreter, whether the package uses ``extends("python")``
+or ``depends_on("python")``.
 
 ^^^^^^^^^^^^^^^^^^^^^
 Alternatives to Spack

lib/spack/docs/config_yaml.rst

@@ -150,7 +150,7 @@ this can expose you to attacks.  Use at your own risk.
 --------------------
 
 Path to custom certificats for SSL verification. The value can be a 
-filesytem path, or an environment variable that expands to a file path.
+filesytem path, or an environment variable that expands to an absolute file path.
 The default value is set to the environment variable ``SSL_CERT_FILE``
 to use the same syntax used by many other applications that automatically
 detect custom certificates.
@@ -160,6 +160,9 @@ in the subprocess calling ``curl``.
 If ``url_fetch_method:urllib`` then files and directories are supported i.e. 
 ``config:ssl_certs:$SSL_CERT_FILE`` or ``config:ssl_certs:$SSL_CERT_DIR``
 will work.
+In all cases the expanded path must be absolute for Spack to use the certificates.
+Certificates relative to an environment can be created by prepending the path variable
+with the Spack configuration variable``$env``.
 
 --------------------
 ``checksum``

lib/spack/docs/containers.rst

@@ -194,15 +194,15 @@ The OS that are currently supported are summarized in the table below:
    * - Operating System
      - Base Image
      - Spack Image
-   * - Ubuntu 18.04
-     - ``ubuntu:18.04``
-     - ``spack/ubuntu-bionic``
    * - Ubuntu 20.04
      - ``ubuntu:20.04``
      - ``spack/ubuntu-focal``
    * - Ubuntu 22.04
      - ``ubuntu:22.04``
      - ``spack/ubuntu-jammy``
+   * - Ubuntu 24.04
+     - ``ubuntu:24.04``
+     - ``spack/ubuntu-noble``
    * - CentOS 7
      - ``centos:7``
      - ``spack/centos7``
@@ -227,12 +227,12 @@ The OS that are currently supported are summarized in the table below:
    * - Rocky Linux 9
      - ``rockylinux:9``
      - ``spack/rockylinux9``
-   * - Fedora Linux 37
-     - ``fedora:37``
-     - ``spack/fedora37``
-   * - Fedora Linux 38
-     - ``fedora:38``
-     - ``spack/fedora38``
+   * - Fedora Linux 39
+     - ``fedora:39``
+     - ``spack/fedora39``
+   * - Fedora Linux 40
+     - ``fedora:40``
+     - ``spack/fedora40``
 
 
 

lib/spack/docs/developer_guide.rst

@@ -552,11 +552,11 @@ With either interpreter you can run a single command:
 
 .. code-block:: console
 
-   $ spack python -c 'import distro; distro.linux_distribution()'
-   ('Ubuntu', '18.04', 'Bionic Beaver')
+   $ spack python -c 'from spack.spec import Spec; Spec("python").concretized()'
+   ...
 
-   $ spack python -i ipython -c 'import distro; distro.linux_distribution()'
-   Out[1]: ('Ubuntu', '18.04', 'Bionic Beaver')
+   $ spack python -i ipython -c 'from spack.spec import Spec; Spec("python").concretized()'
+   Out[1]: ...
 
 or a file:
 
@@ -1071,9 +1071,9 @@ Announcing a release
 
 We announce releases in all of the major Spack communication channels.
 Publishing the release takes care of GitHub. The remaining channels are
-Twitter, Slack, and the mailing list. Here are the steps:
+X, Slack, and the mailing list. Here are the steps:
 
-#. Announce the release on Twitter.
+#. Announce the release on X.
 
    * Compose the tweet on the ``@spackpm`` account per the
      ``spack-twitter`` slack channel.

lib/spack/docs/environments.rst

@@ -142,12 +142,8 @@ user's prompt to begin with the environment name in brackets.
    $ spack env activate -p myenv
    [myenv] $ ...
 
-The ``activate`` command can also be used to create a new environment, if it is
-not already defined, by adding the ``--create`` flag. Managed and anonymous
-environments, anonymous environments are explained in the next section,
-can both be created using the same flags that `spack env create` accepts.
-If an environment already exists then spack will simply activate it and ignore the
-create specific flags.
+The ``activate`` command can also be used to create a new environment if it does not already
+exist.
 
 .. code-block:: console
    
@@ -176,21 +172,36 @@ environment will remove the view from the user environment.
 Anonymous Environments
 ^^^^^^^^^^^^^^^^^^^^^^
 
-Any directory can be treated as an environment if it contains a file
-``spack.yaml``. To load an anonymous environment, use:
+Apart from managed environments, Spack also supports anonymous environments.
+
+Anonymous environments can be placed in any directory of choice.
+
+.. note::
+
+   When uninstalling packages, Spack asks the user to confirm the removal of packages
+   that are still used in a managed environment. This is not the case for anonymous
+   environments.
+
+To create an anonymous environment, use one of the following commands:
 
 .. code-block:: console
 
-   $ spack env activate -d /path/to/directory
+   $ spack env create --dir my_env
+   $ spack env create ./my_env
 
-Anonymous specs can be created in place using the command:
+As a shorthand, you can also create an anonymous environment upon activation if it does not
+already exist:
 
 .. code-block:: console
 
-   $ spack env create -d .
+   $ spack env activate --create ./my_env
+
+For convenience, Spack can also place an anonymous environment in a temporary directory for you:
+
+.. code-block:: console
+
+   $ spack env activate --temp
 
-In this case Spack simply creates a ``spack.yaml`` file in the requested
-directory.
 
 ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
 Environment Sensitive Commands
@@ -449,6 +460,125 @@ Sourcing that file in Bash will make the environment available to the
 user; and can be included in ``.bashrc`` files, etc.  The ``loads``
 file may also be copied out of the environment, renamed, etc.
 
+
+.. _environment_include_concrete:
+
+------------------------------
+Included Concrete Environments
+------------------------------
+
+Spack environments can create an environment based off of information in already
+established environments. You can think of it as a combination of existing
+environments. It will gather information from the existing environment's
+``spack.lock`` and use that during the creation of this included concrete
+environment. When an included concrete environment is created it will generate
+a ``spack.lock`` file for the newly created environment.
+
+
+^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
+Creating included environments
+^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
+To create a combined concrete environment, you must have at least one existing
+concrete environment. You will use the command ``spack env create`` with the
+argument ``--include-concrete`` followed by the name or path of the environment
+you'd like to include. Here is an example of how to create a combined environment
+from the command line.
+
+.. code-block:: console
+
+   $ spack env create myenv
+   $ spack -e myenv add python
+   $ spack -e myenv concretize
+   $ spack env create --include-concrete myenv included_env
+
+
+You can also include an environment directly in the ``spack.yaml`` file. It
+involves adding the ``include_concrete`` heading in the yaml followed by the
+absolute path to the independent environments.
+
+.. code-block:: yaml
+
+   spack:
+     specs: []
+     concretizer:
+         unify: true
+     include_concrete:
+     - /absolute/path/to/environment1
+     - /absolute/path/to/environment2
+
+
+Once the ``spack.yaml`` has been updated you must concretize the environment to
+get the concrete specs from the included environments.
+
+^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
+Updating an included environment
+^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
+If changes were made to the base environment and you want that reflected in the
+included environment you will need to reconcretize both the base environment and the
+included environment for the change to be implemented. For example:
+
+.. code-block:: console
+
+   $ spack env create myenv
+   $ spack -e myenv add python
+   $ spack -e myenv concretize
+   $ spack env create --include-concrete myenv included_env
+
+
+   $ spack -e myenv find
+   ==> In environment myenv
+   ==> Root specs
+   python
+
+   ==> 0 installed packages
+
+
+   $ spack -e included_env find
+   ==> In environment included_env
+   ==> No root specs
+   ==> Included specs
+   python
+
+   ==> 0 installed packages
+
+Here we see that ``included_env`` has access to the python package through
+the ``myenv`` environment. But if we were to add another spec to ``myenv``,
+``included_env`` will not be able to access the new information.
+
+.. code-block:: console
+
+   $ spack -e myenv add perl
+   $ spack -e myenv concretize
+   $ spack -e myenv find
+   ==> In environment myenv
+   ==> Root specs
+   perl  python
+
+   ==> 0 installed packages
+
+
+   $ spack -e included_env find
+   ==> In environment included_env
+   ==> No root specs
+   ==> Included specs
+   python
+
+   ==> 0 installed packages
+
+It isn't until you run the ``spack concretize`` command that the combined
+environment will get the updated information from the reconcretized base environmennt.
+
+.. code-block:: console
+
+   $ spack -e included_env concretize
+   $ spack -e included_env find
+   ==> In environment included_env
+   ==> No root specs
+   ==> Included specs
+   perl  python
+
+   ==> 0 installed packages
+
 .. _environment-configuration:
 
 ------------------------
@@ -800,6 +930,7 @@ For example, the following environment has three root packages:
 This allows for a much-needed reduction in redundancy between packages
 and constraints.
 
+
 ----------------
 Filesystem Views
 ----------------
@@ -1033,7 +1164,7 @@ other targets to depend on the environment installation.
 
 A typical workflow is as follows:
 
-.. code:: console
+.. code-block:: console
 
    spack env create -d .
    spack -e . add perl
@@ -1126,7 +1257,7 @@ its dependencies. This can be useful when certain flags should only apply to
 dependencies. Below we show a use case where a spec is installed with verbose
 output (``spack install --verbose``) while its dependencies are installed silently:
 
-.. code:: console
+.. code-block:: console
 
    $ spack env depfile -o Makefile
 
@@ -1148,7 +1279,7 @@ This can be accomplished through the generated ``[<prefix>/]SPACK_PACKAGE_IDS``
 variable. Assuming we have an active and concrete environment, we generate the
 associated ``Makefile`` with a prefix ``example``:
 
-.. code:: console
+.. code-block:: console
 
    $ spack env depfile -o env.mk --make-prefix example
 

lib/spack/docs/getting_started.rst

@@ -478,6 +478,13 @@ prefix, you can add them to the ``extra_attributes`` field. Similarly,
 all other fields from the compilers config can be added to the
 ``extra_attributes`` field for an external representing a compiler.
 
+Note that the format for the ``paths`` field in the
+``extra_attributes`` section is different than in the ``compilers``
+config. For compilers configured as external packages, the section is
+named ``compilers`` and the dictionary maps language names (``c``,
+``cxx``, ``fortran``) to paths, rather than using the names ``cc``,
+``fc``, and ``f77``.
+
 .. code-block:: yaml
 
    packages:
@@ -493,11 +500,10 @@ all other fields from the compilers config can be added to the
        - spec: llvm+clang@15.0.0 arch=linux-rhel8-skylake
          prefix: /usr
          extra_attributes:
-           paths:
-             cc: /usr/bin/clang-with-suffix
+           compilers:
+             c: /usr/bin/clang-with-suffix
              cxx: /usr/bin/clang++-with-extra-info
-             fc: /usr/bin/gfortran
-             f77: /usr/bin/gfortran
+             fortran: /usr/bin/gfortran
            extra_rpaths:
            - /usr/lib/llvm/
 
@@ -1572,6 +1578,8 @@ Microsoft Visual Studio
 """""""""""""""""""""""
 
 Microsoft Visual Studio provides the only Windows C/C++ compiler that is currently supported by Spack.
+Spack additionally requires that the Windows SDK (including WGL) to be installed as part of your
+visual studio installation as it is required to build many packages from source.
 
 We require several specific components to be included in the Visual Studio installation.
 One is the C/C++ toolset, which can be selected as "Desktop development with C++" or "C++ build tools,"
@@ -1579,6 +1587,7 @@ depending on installation type (Professional, Build Tools, etc.)  The other requ
 "C++ CMake tools for Windows," which can be selected from among the optional packages.
 This provides CMake and Ninja for use during Spack configuration.
 
+
 If you already have Visual Studio installed, you can make sure these components are installed by
 rerunning the installer.  Next to your installation, select "Modify" and look at the
 "Installation details" pane on the right.

lib/spack/docs/packaging_guide.rst

@@ -6435,9 +6435,12 @@ the ``paths`` attribute:
          echo "Target: x86_64-pc-linux-gnu"
          echo "Thread model: posix"
          echo "InstalledDir: /usr/bin"
+     platforms: ["linux", "darwin"]
      results:
      - spec: 'llvm@3.9.1 +clang~lld~lldb'
 
+If the ``platforms`` attribute is present, tests are run only if the current host
+matches one of the listed platforms.
 Each test is performed by first creating a temporary directory structure as
 specified in the corresponding ``layout`` and by then running
 package detection and checking that the outcome matches the expected
@@ -6471,6 +6474,10 @@ package detection and checking that the outcome matches the expected
      - A spec that is expected from detection
      - Any valid spec
      - Yes
+   * - ``results:[0]:extra_attributes``
+     - Extra attributes expected on the associated Spec
+     - Nested dictionary with string as keys, and regular expressions as leaf values
+     - No
 
 """""""""""""""""""""""""""""""
 Reuse tests from other packages

lib/spack/docs/repositories.rst

@@ -476,9 +476,3 @@ implemented using Python's built-in `sys.path
 :py:mod:`spack.repo` module implements a custom `Python importer
 <https://docs.python.org/2/library/imp.html>`_.
 
-.. warning::
-
-   The mechanism for extending packages is not yet extensively tested,
-   and extending packages across repositories imposes inter-repo
-   dependencies, which may be hard to manage.  Use this feature at your
-   own risk, but let us know if you have a use case for it.

lib/spack/docs/requirements.txt

@@ -2,12 +2,12 @@ sphinx==7.2.6
 sphinxcontrib-programoutput==0.17
 sphinx_design==0.5.0
 sphinx-rtd-theme==2.0.0
-python-levenshtein==0.25.0
+python-levenshtein==0.25.1
 docutils==0.20.1
-pygments==2.17.2
+pygments==2.18.0
 urllib3==2.2.1
-pytest==8.1.1
+pytest==8.2.0
 isort==5.13.2
-black==24.3.0
+black==24.4.2
 flake8==7.0.0
-mypy==1.9.0
+mypy==1.10.0

lib/spack/env/cc

@@ -47,7 +47,8 @@ SPACK_F77_RPATH_ARG
 SPACK_FC_RPATH_ARG
 SPACK_LINKER_ARG
 SPACK_SHORT_SPEC
-SPACK_SYSTEM_DIRS"
+SPACK_SYSTEM_DIRS
+SPACK_MANAGED_DIRS"
 
 # Optional parameters that aren't required to be set
 
@@ -173,22 +174,6 @@ preextend() {
     unset IFS
 }
 
-# system_dir PATH
-# test whether a path is a system directory
-system_dir() {
-    IFS=':'  # SPACK_SYSTEM_DIRS is colon-separated
-    path="$1"
-    for sd in $SPACK_SYSTEM_DIRS; do
-        if [ "${path}" = "${sd}" ] || [ "${path}" = "${sd}/" ]; then
-            # success if path starts with a system prefix
-            unset IFS
-            return 0
-        fi
-    done
-    unset IFS
-    return 1  # fail if path starts no system prefix
-}
-
 # Fail with a clear message if the input contains any bell characters.
 if eval "[ \"\${*#*${lsep}}\" != \"\$*\" ]"; then
     die "Compiler command line contains our separator ('${lsep}'). Cannot parse."
@@ -201,6 +186,18 @@ for param in $params; do
     fi
 done
 
+# eval this because SPACK_MANAGED_DIRS and SPACK_SYSTEM_DIRS are inputs we don't wanna loop over.
+# moving the eval inside the function would eval it every call.
+eval "\
+path_order() {
+case \"\$1\" in
+    $SPACK_MANAGED_DIRS) return 0 ;;
+    $SPACK_SYSTEM_DIRS) return 2 ;;
+    /*) return 1 ;;
+esac
+}
+"
+
 # Check if optional parameters are defined
 # If we aren't asking for debug flags, don't add them
 if [ -z "${SPACK_ADD_DEBUG_FLAGS:-}" ]; then
@@ -248,7 +245,7 @@ case "$command" in
         lang_flags=C
         debug_flags="-g"
         ;;
-    c++|CC|g++|clang++|armclang++|icpc|icpx|dpcpp|pgc++|nvc++|xlc++|xlc++_r|FCC|amdclang++|crayCC)
+    c++|CC|g++|clang++|armclang++|icpc|icpx|pgc++|nvc++|xlc++|xlc++_r|FCC|amdclang++|crayCC)
         command="$SPACK_CXX"
         language="C++"
         comp="CXX"
@@ -420,11 +417,12 @@ input_command="$*"
 parse_Wl() {
     while [ $# -ne 0 ]; do
     if [ "$wl_expect_rpath" = yes ]; then
-        if system_dir "$1"; then
-            append return_system_rpath_dirs_list "$1"
-        else
-            append return_rpath_dirs_list "$1"
-        fi
+        path_order "$1"
+        case $? in
+            0) append return_spack_store_rpath_dirs_list "$1" ;;
+            1) append return_rpath_dirs_list "$1" ;;
+            2) append return_system_rpath_dirs_list "$1" ;;
+        esac
         wl_expect_rpath=no
     else
         case "$1" in
@@ -432,21 +430,25 @@ parse_Wl() {
                 arg="${1#-rpath=}"
                 if [ -z "$arg" ]; then
                     shift; continue
-                elif system_dir "$arg"; then
-                    append return_system_rpath_dirs_list "$arg"
-                else
-                    append return_rpath_dirs_list "$arg"
                 fi
+                path_order "$arg"
+                case $? in
+                    0) append return_spack_store_rpath_dirs_list "$arg" ;;
+                    1) append return_rpath_dirs_list "$arg" ;;
+                    2) append return_system_rpath_dirs_list "$arg" ;;
+                esac
                 ;;
             --rpath=*)
                 arg="${1#--rpath=}"
                 if [ -z "$arg" ]; then
                     shift; continue
-                elif system_dir "$arg"; then
-                    append return_system_rpath_dirs_list "$arg"
-                else
-                    append return_rpath_dirs_list "$arg"
                 fi
+                path_order "$arg"
+                case $? in
+                    0) append return_spack_store_rpath_dirs_list "$arg" ;;
+                    1) append return_rpath_dirs_list "$arg" ;;
+                    2) append return_system_rpath_dirs_list "$arg" ;;
+                esac
                 ;;
             -rpath|--rpath)
                 wl_expect_rpath=yes
@@ -473,12 +475,20 @@ categorize_arguments() {
 
     return_other_args_list=""
     return_isystem_was_used=""
+
+    return_isystem_spack_store_include_dirs_list=""
     return_isystem_system_include_dirs_list=""
     return_isystem_include_dirs_list=""
+
+    return_spack_store_include_dirs_list=""
     return_system_include_dirs_list=""
     return_include_dirs_list=""
+
+    return_spack_store_lib_dirs_list=""
     return_system_lib_dirs_list=""
     return_lib_dirs_list=""
+
+    return_spack_store_rpath_dirs_list=""
     return_system_rpath_dirs_list=""
     return_rpath_dirs_list=""
 
@@ -526,7 +536,7 @@ categorize_arguments() {
                     continue
                 fi
 
-                replaced="$after$stripped" 
+                replaced="$after$stripped"
 
                 # it matched, remove it
                 shift
@@ -546,29 +556,32 @@ categorize_arguments() {
                 arg="${1#-isystem}"
                 return_isystem_was_used=true
                 if [ -z "$arg" ]; then shift; arg="$1"; fi
-                if system_dir "$arg"; then
-                    append return_isystem_system_include_dirs_list "$arg"
-                else
-                    append return_isystem_include_dirs_list "$arg"
-                fi
+                path_order "$arg"
+                case $? in
+                    0) append return_isystem_spack_store_include_dirs_list "$arg" ;;
+                    1) append return_isystem_include_dirs_list "$arg" ;;
+                    2) append return_isystem_system_include_dirs_list "$arg" ;;
+                esac
                 ;;
             -I*)
                 arg="${1#-I}"
                 if [ -z "$arg" ]; then shift; arg="$1"; fi
-                if system_dir "$arg"; then
-                    append return_system_include_dirs_list "$arg"
-                else
-                    append return_include_dirs_list "$arg"
-                fi
+                path_order "$arg"
+                case $? in
+                    0) append return_spack_store_include_dirs_list "$arg" ;;
+                    1) append return_include_dirs_list "$arg" ;;
+                    2) append return_system_include_dirs_list "$arg" ;;
+                esac
                 ;;
             -L*)
                 arg="${1#-L}"
                 if [ -z "$arg" ]; then shift; arg="$1"; fi
-                if system_dir "$arg"; then
-                    append return_system_lib_dirs_list "$arg"
-                else
-                    append return_lib_dirs_list "$arg"
-                fi
+                path_order "$arg"
+                case $? in
+                    0) append return_spack_store_lib_dirs_list "$arg" ;;
+                    1) append return_lib_dirs_list "$arg" ;;
+                    2) append return_system_lib_dirs_list "$arg" ;;
+                esac
                 ;;
             -l*)
                 # -loopopt=0 is generated erroneously in autoconf <= 2.69,
@@ -601,29 +614,32 @@ categorize_arguments() {
                     break
                 elif [ "$xlinker_expect_rpath" = yes ]; then
                     # Register the path of -Xlinker -rpath <other args> -Xlinker <path>
-                    if system_dir "$1"; then
-                        append return_system_rpath_dirs_list "$1"
-                    else
-                        append return_rpath_dirs_list "$1"
-                    fi
+                    path_order "$1"
+                    case $? in
+                        0) append return_spack_store_rpath_dirs_list "$1" ;;
+                        1) append return_rpath_dirs_list "$1" ;;
+                        2) append return_system_rpath_dirs_list "$1" ;;
+                    esac
                     xlinker_expect_rpath=no
                 else
                     case "$1" in
                         -rpath=*)
                             arg="${1#-rpath=}"
-                            if system_dir "$arg"; then
-                                append return_system_rpath_dirs_list "$arg"
-                            else
-                                append return_rpath_dirs_list "$arg"
-                            fi
+                            path_order "$arg"
+                            case $? in
+                                0) append return_spack_store_rpath_dirs_list "$arg" ;;
+                                1) append return_rpath_dirs_list "$arg" ;;
+                                2) append return_system_rpath_dirs_list "$arg" ;;
+                            esac
                             ;;
                         --rpath=*)
                             arg="${1#--rpath=}"
-                            if system_dir "$arg"; then
-                                append return_system_rpath_dirs_list "$arg"
-                            else
-                                append return_rpath_dirs_list "$arg"
-                            fi
+                            path_order "$arg"
+                            case $? in
+                                0) append return_spack_store_rpath_dirs_list "$arg" ;;
+                                1) append return_rpath_dirs_list "$arg" ;;
+                                2) append return_system_rpath_dirs_list "$arg" ;;
+                            esac
                             ;;
                         -rpath|--rpath)
                             xlinker_expect_rpath=yes
@@ -661,16 +677,25 @@ categorize_arguments() {
 }
 
 categorize_arguments "$@"
-    include_dirs_list="$return_include_dirs_list"
-    lib_dirs_list="$return_lib_dirs_list"
-    rpath_dirs_list="$return_rpath_dirs_list"
-    system_include_dirs_list="$return_system_include_dirs_list"
-    system_lib_dirs_list="$return_system_lib_dirs_list"
-    system_rpath_dirs_list="$return_system_rpath_dirs_list"
-    isystem_was_used="$return_isystem_was_used"
-    isystem_system_include_dirs_list="$return_isystem_system_include_dirs_list"
-    isystem_include_dirs_list="$return_isystem_include_dirs_list"
-    other_args_list="$return_other_args_list"
+
+spack_store_include_dirs_list="$return_spack_store_include_dirs_list"
+system_include_dirs_list="$return_system_include_dirs_list"
+include_dirs_list="$return_include_dirs_list"
+
+spack_store_lib_dirs_list="$return_spack_store_lib_dirs_list"
+system_lib_dirs_list="$return_system_lib_dirs_list"
+lib_dirs_list="$return_lib_dirs_list"
+
+spack_store_rpath_dirs_list="$return_spack_store_rpath_dirs_list"
+system_rpath_dirs_list="$return_system_rpath_dirs_list"
+rpath_dirs_list="$return_rpath_dirs_list"
+
+isystem_spack_store_include_dirs_list="$return_isystem_spack_store_include_dirs_list"
+isystem_system_include_dirs_list="$return_isystem_system_include_dirs_list"
+isystem_include_dirs_list="$return_isystem_include_dirs_list"
+
+isystem_was_used="$return_isystem_was_used"
+other_args_list="$return_other_args_list"
 
 #
 # Add flags from Spack's cppflags, cflags, cxxflags, fcflags, fflags, and
@@ -730,7 +755,7 @@ esac
 
 # Linker flags
 case "$mode" in
-    ld|ccld)
+    ccld)
         extend spack_flags_list SPACK_LDFLAGS
         ;;
 esac
@@ -738,16 +763,25 @@ esac
 IFS="$lsep"
     categorize_arguments $spack_flags_list
 unset IFS
-        spack_flags_include_dirs_list="$return_include_dirs_list"
-        spack_flags_lib_dirs_list="$return_lib_dirs_list"
-        spack_flags_rpath_dirs_list="$return_rpath_dirs_list"
-        spack_flags_system_include_dirs_list="$return_system_include_dirs_list"
-        spack_flags_system_lib_dirs_list="$return_system_lib_dirs_list"
-        spack_flags_system_rpath_dirs_list="$return_system_rpath_dirs_list"
-        spack_flags_isystem_was_used="$return_isystem_was_used"
-        spack_flags_isystem_system_include_dirs_list="$return_isystem_system_include_dirs_list"
-        spack_flags_isystem_include_dirs_list="$return_isystem_include_dirs_list"
-        spack_flags_other_args_list="$return_other_args_list"
+
+spack_flags_isystem_spack_store_include_dirs_list="$return_isystem_spack_store_include_dirs_list"
+spack_flags_isystem_system_include_dirs_list="$return_isystem_system_include_dirs_list"
+spack_flags_isystem_include_dirs_list="$return_isystem_include_dirs_list"
+
+spack_flags_spack_store_include_dirs_list="$return_spack_store_include_dirs_list"
+spack_flags_system_include_dirs_list="$return_system_include_dirs_list"
+spack_flags_include_dirs_list="$return_include_dirs_list"
+
+spack_flags_spack_store_lib_dirs_list="$return_spack_store_lib_dirs_list"
+spack_flags_system_lib_dirs_list="$return_system_lib_dirs_list"
+spack_flags_lib_dirs_list="$return_lib_dirs_list"
+
+spack_flags_spack_store_rpath_dirs_list="$return_spack_store_rpath_dirs_list"
+spack_flags_system_rpath_dirs_list="$return_system_rpath_dirs_list"
+spack_flags_rpath_dirs_list="$return_rpath_dirs_list"
+
+spack_flags_isystem_was_used="$return_isystem_was_used"
+spack_flags_other_args_list="$return_other_args_list"
 
 
 # On macOS insert headerpad_max_install_names linker flag
@@ -767,11 +801,13 @@ if [ "$mode" = ccld ] || [ "$mode" = ld ]; then
         # Append RPATH directories. Note that in the case of the
         # top-level package these directories may not exist yet. For dependencies
         # it is assumed that paths have already been confirmed.
+        extend spack_store_rpath_dirs_list SPACK_STORE_RPATH_DIRS
         extend rpath_dirs_list SPACK_RPATH_DIRS
     fi
 fi
 
 if [ "$mode" = ccld ] || [ "$mode" = ld ]; then
+    extend spack_store_lib_dirs_list SPACK_STORE_LINK_DIRS
     extend lib_dirs_list SPACK_LINK_DIRS
 fi
 
@@ -798,38 +834,50 @@ case "$mode" in
         ;;
 esac
 
+case "$mode" in
+    cpp|cc|as|ccld)
+        if [ "$spack_flags_isystem_was_used" = "true" ] || [ "$isystem_was_used" = "true" ]; then
+            extend isystem_spack_store_include_dirs_list SPACK_STORE_INCLUDE_DIRS
+            extend isystem_include_dirs_list SPACK_INCLUDE_DIRS
+        else
+            extend spack_store_include_dirs_list SPACK_STORE_INCLUDE_DIRS
+            extend include_dirs_list SPACK_INCLUDE_DIRS
+        fi
+        ;;
+esac
+
 #
 # Finally, reassemble the command line.
 #
 args_list="$flags_list"
 
-# Insert include directories just prior to any system include directories
+# Include search paths partitioned by (in store, non-sytem, system)
 # NOTE: adding ${lsep} to the prefix here turns every added element into two
-extend args_list spack_flags_include_dirs_list "-I"
-extend args_list include_dirs_list "-I"
+extend args_list spack_flags_spack_store_include_dirs_list -I
+extend args_list spack_store_include_dirs_list -I
+
+extend args_list spack_flags_include_dirs_list -I
+extend args_list include_dirs_list -I
+
+extend args_list spack_flags_isystem_spack_store_include_dirs_list "-isystem${lsep}"
+extend args_list isystem_spack_store_include_dirs_list "-isystem${lsep}"
+
 extend args_list spack_flags_isystem_include_dirs_list "-isystem${lsep}"
 extend args_list isystem_include_dirs_list "-isystem${lsep}"
 
-case "$mode" in
-    cpp|cc|as|ccld)
-        if [ "$spack_flags_isystem_was_used" = "true" ]; then
-            extend args_list SPACK_INCLUDE_DIRS "-isystem${lsep}"
-        elif [ "$isystem_was_used" = "true" ]; then
-            extend args_list SPACK_INCLUDE_DIRS "-isystem${lsep}"
-        else
-            extend args_list SPACK_INCLUDE_DIRS "-I"
-        fi
-        ;;
-esac
-
 extend args_list spack_flags_system_include_dirs_list -I
 extend args_list system_include_dirs_list -I
+
 extend args_list spack_flags_isystem_system_include_dirs_list "-isystem${lsep}"
 extend args_list isystem_system_include_dirs_list "-isystem${lsep}"
 
-# Library search paths
+# Library search paths partitioned by (in store, non-sytem, system)
+extend args_list spack_flags_spack_store_lib_dirs_list "-L"
+extend args_list spack_store_lib_dirs_list "-L"
+
 extend args_list spack_flags_lib_dirs_list "-L"
 extend args_list lib_dirs_list "-L"
+
 extend args_list spack_flags_system_lib_dirs_list "-L"
 extend args_list system_lib_dirs_list "-L"
 
@@ -839,8 +887,12 @@ case "$mode" in
         if [ -n "$dtags_to_add" ] ; then
             append args_list "$linker_arg$dtags_to_add"
         fi
+        extend args_list spack_flags_spack_store_rpath_dirs_list "$rpath"
+        extend args_list spack_store_rpath_dirs_list "$rpath"
+
         extend args_list spack_flags_rpath_dirs_list "$rpath"
         extend args_list rpath_dirs_list "$rpath"
+
         extend args_list spack_flags_system_rpath_dirs_list "$rpath"
         extend args_list system_rpath_dirs_list "$rpath"
         ;;
@@ -848,8 +900,12 @@ case "$mode" in
         if [ -n "$dtags_to_add" ] ; then
             append args_list "$dtags_to_add"
         fi
+        extend args_list spack_flags_spack_store_rpath_dirs_list "-rpath${lsep}"
+        extend args_list spack_store_rpath_dirs_list "-rpath${lsep}"
+
         extend args_list spack_flags_rpath_dirs_list "-rpath${lsep}"
         extend args_list rpath_dirs_list "-rpath${lsep}"
+
         extend args_list spack_flags_system_rpath_dirs_list "-rpath${lsep}"
         extend args_list system_rpath_dirs_list "-rpath${lsep}"
         ;;
@@ -913,4 +969,3 @@ fi
 # Execute the full command, preserving spaces with IFS set
 # to the alarm bell separator.
 IFS="$lsep"; exec $full_command_list
-

lib/spack/external/__init__.py

@@ -18,7 +18,7 @@
 
 * Homepage: https://pypi.python.org/pypi/archspec
 * Usage: Labeling, comparison and detection of microarchitectures
-* Version: 0.2.3 (commit 7b8fe60b69e2861e7dac104bc1c183decfcd3daf)
+* Version: 0.2.4 (commit 48b92512b9ce203ded0ebd1ac41b42593e931f7c)
 
 astunparse
 ----------------

lib/spack/external/_vendoring/ruamel/yaml/comments.py

@@ -497,7 +497,7 @@ def copy_attributes(self, t, memo=None):
                   Tag.attrib, merge_attrib]:
             if hasattr(self, a):
                 if memo is not None:
-                    setattr(t, a, copy.deepcopy(getattr(self, a, memo)))
+                    setattr(t, a, copy.deepcopy(getattr(self, a), memo))
                 else:
                     setattr(t, a, getattr(self, a))
         # fmt: on

lib/spack/external/archspec/__init__.py

@@ -1,3 +1,3 @@
 """Init file to avoid namespace packages"""
 
-__version__ = "0.2.3"
+__version__ = "0.2.4"

lib/spack/external/archspec/cpu/__init__.py

@@ -5,9 +5,10 @@
 """The "cpu" package permits to query and compare different
 CPU microarchitectures.
 """
-from .detect import host
+from .detect import brand_string, host
 from .microarchitecture import (
     TARGETS,
+    InvalidCompilerVersion,
     Microarchitecture,
     UnsupportedMicroarchitecture,
     generic_microarchitecture,
@@ -15,10 +16,12 @@
 )
 
 __all__ = [
+    "brand_string",
+    "host",
+    "TARGETS",
+    "InvalidCompilerVersion",
     "Microarchitecture",
     "UnsupportedMicroarchitecture",
-    "TARGETS",
     "generic_microarchitecture",
-    "host",
     "version_components",
 ]

lib/spack/external/archspec/cpu/detect.py

@@ -155,6 +155,31 @@ def _is_bit_set(self, register: int, bit: int) -> bool:
         mask = 1 << bit
         return register & mask > 0
 
+    def brand_string(self) -> Optional[str]:
+        """Returns the brand string, if available."""
+        if self.highest_extension_support < 0x80000004:
+            return None
+
+        r1 = self.cpuid.registers_for(eax=0x80000002, ecx=0)
+        r2 = self.cpuid.registers_for(eax=0x80000003, ecx=0)
+        r3 = self.cpuid.registers_for(eax=0x80000004, ecx=0)
+        result = struct.pack(
+            "IIIIIIIIIIII",
+            r1.eax,
+            r1.ebx,
+            r1.ecx,
+            r1.edx,
+            r2.eax,
+            r2.ebx,
+            r2.ecx,
+            r2.edx,
+            r3.eax,
+            r3.ebx,
+            r3.ecx,
+            r3.edx,
+        ).decode("utf-8")
+        return result.strip("\x00")
+
 
 @detection(operating_system="Windows")
 def cpuid_info():
@@ -174,8 +199,8 @@ def _check_output(args, env):
 
 
 WINDOWS_MAPPING = {
-    "AMD64": "x86_64",
-    "ARM64": "aarch64",
+    "AMD64": X86_64,
+    "ARM64": AARCH64,
 }
 
 
@@ -409,3 +434,16 @@ def compatibility_check_for_riscv64(info, target):
     return (target == arch_root or arch_root in target.ancestors) and (
         target.name == info.name or target.vendor == "generic"
     )
+
+
+def brand_string() -> Optional[str]:
+    """Returns the brand string of the host, if detected, or None."""
+    if platform.system() == "Darwin":
+        return _check_output(
+            ["sysctl", "-n", "machdep.cpu.brand_string"], env=_ensure_bin_usrbin_in_path()
+        ).strip()
+
+    if host().family == X86_64:
+        return CpuidInfoCollector().brand_string()
+
+    return None

lib/spack/external/archspec/cpu/microarchitecture.py

@@ -208,6 +208,8 @@ def optimization_flags(self, compiler, version):
         """Returns a string containing the optimization flags that needs
         to be used to produce code optimized for this micro-architecture.
 
+        The version is expected to be a string of dot separated digits.
+
         If there is no information on the compiler passed as argument the
         function returns an empty string. If it is known that the compiler
         version we want to use does not support this architecture the function
@@ -216,6 +218,11 @@ def optimization_flags(self, compiler, version):
         Args:
             compiler (str): name of the compiler to be used
             version (str): version of the compiler to be used
+
+        Raises:
+            UnsupportedMicroarchitecture: if the requested compiler does not support
+                this micro-architecture.
+            ValueError: if the version doesn't match the expected format
         """
         # If we don't have information on compiler at all return an empty string
         if compiler not in self.family.compilers:
@@ -232,6 +239,14 @@ def optimization_flags(self, compiler, version):
             msg = msg.format(compiler, best_target, best_target.family)
             raise UnsupportedMicroarchitecture(msg)
 
+        # Check that the version matches the expected format
+        if not re.match(r"^(?:\d+\.)*\d+$", version):
+            msg = (
+                "invalid format for the compiler version argument. "
+                "Only dot separated digits are allowed."
+            )
+            raise InvalidCompilerVersion(msg)
+
         # If we have information on this compiler we need to check the
         # version being used
         compiler_info = self.compilers[compiler]
@@ -292,7 +307,7 @@ def generic_microarchitecture(name):
     Args:
         name (str): name of the micro-architecture
     """
-    return Microarchitecture(name, parents=[], vendor="generic", features=[], compilers={})
+    return Microarchitecture(name, parents=[], vendor="generic", features=set(), compilers={})
 
 
 def version_components(version):
@@ -367,7 +382,15 @@ def fill_target_from_dict(name, data, targets):
 TARGETS = LazyDictionary(_known_microarchitectures)
 
 
-class UnsupportedMicroarchitecture(ValueError):
+class ArchspecError(Exception):
+    """Base class for errors within archspec"""
+
+
+class UnsupportedMicroarchitecture(ArchspecError, ValueError):
     """Raised if a compiler version does not support optimization for a given
     micro-architecture.
     """
+
+
+class InvalidCompilerVersion(ArchspecError, ValueError):
+    """Raised when an invalid format is used for compiler versions in archspec."""

lib/spack/external/archspec/json/cpu/microarchitectures.json

@@ -2937,8 +2937,6 @@
           "ilrcpc",
           "flagm",
           "ssbs",
-          "paca",
-          "pacg",
           "dcpodp",
           "svei8mm",
           "svebf16",
@@ -3066,8 +3064,6 @@
 	  "flagm",
 	  "ssbs",
 	  "sb",
-	  "paca",
-	  "pacg",
 	  "dcpodp",
 	  "sve2",
 	  "sveaes",
@@ -3081,8 +3077,7 @@
 	  "svebf16",
 	  "i8mm",
 	  "bf16",
-	  "dgh",
-	  "bti"
+	  "dgh"
       ],
       "compilers" : {
           "gcc": [

lib/spack/external/patches/ruamelyaml.patch

@@ -0,0 +1,13 @@
+diff --git a/lib/spack/external/_vendoring/ruamel/yaml/comments.py b/lib/spack/external/_vendoring/ruamel/yaml/comments.py
+index 1badeda585..892c868af3 100644
+--- a/lib/spack/external/_vendoring/ruamel/yaml/comments.py
++++ b/lib/spack/external/_vendoring/ruamel/yaml/comments.py
+@@ -497,7 +497,7 @@ def copy_attributes(self, t, memo=None):
+                   Tag.attrib, merge_attrib]:
+             if hasattr(self, a):
+                 if memo is not None:
+-                    setattr(t, a, copy.deepcopy(getattr(self, a, memo)))
++                    setattr(t, a, copy.deepcopy(getattr(self, a), memo))
+                 else:
+                     setattr(t, a, getattr(self, a))
+         # fmt: on

lib/spack/llnl/path.py

@@ -98,3 +98,10 @@ def path_filter_caller(*args, **kwargs):
     if _func:
         return holder_func(_func)
     return holder_func
+
+
+def sanitize_win_longpath(path: str) -> str:
+    """Strip Windows extended path prefix from strings
+    Returns sanitized string.
+    no-op if extended path prefix is not present"""
+    return path.lstrip("\\\\?\\")

lib/spack/llnl/util/filesystem.py

@@ -187,26 +187,58 @@ def polite_filename(filename: str) -> str:
     return _polite_antipattern().sub("_", filename)
 
 
-def getuid():
+def getuid() -> Union[str, int]:
+    """Returns os getuid on non Windows
+    On Windows returns 0 for admin users, login string otherwise
+    This is in line with behavior from get_owner_uid which
+    always returns the login string on Windows
+    """
     if sys.platform == "win32":
         import ctypes
 
+        # If not admin, use the string name of the login as a unique ID
         if ctypes.windll.shell32.IsUserAnAdmin() == 0:
-            return 1
+            return os.getlogin()
         return 0
     else:
         return os.getuid()
 
 
+def _win_rename(src, dst):
+    # os.replace will still fail if on Windows (but not POSIX) if the dst
+    # is a symlink to a directory (all other cases have parity Windows <-> Posix)
+    if os.path.islink(dst) and os.path.isdir(os.path.realpath(dst)):
+        if os.path.samefile(src, dst):
+            # src and dst are the same
+            # do nothing and exit early
+            return
+        # If dst exists and is a symlink to a directory
+        # we need to remove dst and then perform rename/replace
+        # this is safe to do as there's no chance src == dst now
+        os.remove(dst)
+    os.replace(src, dst)
+
+
+@system_path_filter
+def msdos_escape_parens(path):
+    """MS-DOS interprets parens as grouping parameters even in a quoted string"""
+    if sys.platform == "win32":
+        return path.replace("(", "^(").replace(")", "^)")
+    else:
+        return path
+
+
 @system_path_filter
 def rename(src, dst):
     # On Windows, os.rename will fail if the destination file already exists
+    # os.replace is the same as os.rename on POSIX and is MoveFileExW w/
+    # the MOVEFILE_REPLACE_EXISTING flag on Windows
+    # Windows invocation is abstracted behind additonal logic handling
+    # remaining cases of divergent behavior accross platforms
     if sys.platform == "win32":
-        # Windows path existence checks will sometimes fail on junctions/links/symlinks
-        # so check for that case
-        if os.path.exists(dst) or islink(dst):
-            os.remove(dst)
-    os.rename(src, dst)
+        _win_rename(src, dst)
+    else:
+        os.replace(src, dst)
 
 
 @system_path_filter
@@ -536,7 +568,13 @@ def exploding_archive_handler(tarball_container, stage):
 
 
 @system_path_filter(arg_slice=slice(1))
-def get_owner_uid(path, err_msg=None):
+def get_owner_uid(path, err_msg=None) -> Union[str, int]:
+    """Returns owner UID of path destination
+    On non Windows this is the value of st_uid
+    On Windows this is the login string associated with the
+     owning user.
+
+    """
     if not os.path.exists(path):
         mkdirp(path, mode=stat.S_IRWXU)
 
@@ -805,7 +843,7 @@ def copy_tree(
             if islink(s):
                 link_target = resolve_link_target_relative_to_the_link(s)
                 if symlinks:
-                    target = os.readlink(s)
+                    target = readlink(s)
                     if os.path.isabs(target):
 
                         def escaped_path(path):
@@ -1217,10 +1255,12 @@ def windows_sfn(path: os.PathLike):
     import ctypes
 
     k32 = ctypes.WinDLL("kernel32", use_last_error=True)
+    # Method with null values returns size of short path name
+    sz = k32.GetShortPathNameW(path, None, 0)
     # stub Windows types TCHAR[LENGTH]
-    TCHAR_arr = ctypes.c_wchar * len(path)
+    TCHAR_arr = ctypes.c_wchar * sz
     ret_str = TCHAR_arr()
-    k32.GetShortPathNameW(path, ret_str, len(path))
+    k32.GetShortPathNameW(path, ctypes.byref(ret_str), sz)
     return ret_str.value
 
 
@@ -2410,9 +2450,10 @@ def add_library_dependent(self, *dest):
         """
         for pth in dest:
             if os.path.isfile(pth):
-                self._additional_library_dependents.add(pathlib.Path(pth).parent)
+                new_pth = pathlib.Path(pth).parent
             else:
-                self._additional_library_dependents.add(pathlib.Path(pth))
+                new_pth = pathlib.Path(pth)
+            self._additional_library_dependents.add(new_pth)
 
     @property
     def rpaths(self):
@@ -2490,8 +2531,14 @@ def establish_link(self):
 
         # for each binary install dir in self.pkg (i.e. pkg.prefix.bin, pkg.prefix.lib)
         # install a symlink to each dependent library
-        for library, lib_dir in itertools.product(self.rpaths, self.library_dependents):
-            self._link(library, lib_dir)
+
+        # do not rpath for system libraries included in the dag
+        # we should not be modifying libraries managed by the Windows system
+        # as this will negatively impact linker behavior and can result in permission
+        # errors if those system libs are not modifiable by Spack
+        if "windows-system" not in getattr(self.pkg, "tags", []):
+            for library, lib_dir in itertools.product(self.rpaths, self.library_dependents):
+                self._link(library, lib_dir)
 
 
 @system_path_filter

lib/spack/llnl/util/symlink.py

@@ -11,7 +11,7 @@
 
 from llnl.util import lang, tty
 
-from ..path import system_path_filter
+from ..path import sanitize_win_longpath, system_path_filter
 
 if sys.platform == "win32":
     from win32file import CreateHardLink
@@ -247,9 +247,9 @@ def _windows_create_junction(source: str, link: str):
     out, err = proc.communicate()
     tty.debug(out.decode())
     if proc.returncode != 0:
-        err = err.decode()
-        tty.error(err)
-        raise SymlinkError("Make junction command returned a non-zero return code.", err)
+        err_str = err.decode()
+        tty.error(err_str)
+        raise SymlinkError("Make junction command returned a non-zero return code.", err_str)
 
 
 def _windows_create_hard_link(path: str, link: str):
@@ -269,14 +269,14 @@ def _windows_create_hard_link(path: str, link: str):
         CreateHardLink(link, path)
 
 
-def readlink(path: str):
+def readlink(path: str, *, dir_fd=None):
     """Spack utility to override of os.readlink method to work cross platform"""
     if _windows_is_hardlink(path):
         return _windows_read_hard_link(path)
     elif _windows_is_junction(path):
         return _windows_read_junction(path)
     else:
-        return os.readlink(path)
+        return sanitize_win_longpath(os.readlink(path, dir_fd=dir_fd))
 
 
 def _windows_read_hard_link(link: str) -> str:

lib/spack/llnl/util/tty/__init__.py

@@ -12,7 +12,7 @@
 import traceback
 from datetime import datetime
 from sys import platform as _platform
-from typing import NoReturn
+from typing import Any, NoReturn
 
 if _platform != "win32":
     import fcntl
@@ -158,21 +158,22 @@ def get_timestamp(force=False):
         return ""
 
 
-def msg(message, *args, **kwargs):
+def msg(message: Any, *args: Any, newline: bool = True) -> None:
     if not msg_enabled():
         return
 
     if isinstance(message, Exception):
-        message = "%s: %s" % (message.__class__.__name__, str(message))
+        message = f"{message.__class__.__name__}: {message}"
+    else:
+        message = str(message)
 
-    newline = kwargs.get("newline", True)
     st_text = ""
     if _stacktrace:
         st_text = process_stacktrace(2)
-    if newline:
-        cprint("@*b{%s==>} %s%s" % (st_text, get_timestamp(), cescape(_output_filter(message))))
-    else:
-        cwrite("@*b{%s==>} %s%s" % (st_text, get_timestamp(), cescape(_output_filter(message))))
+
+    nl = "\n" if newline else ""
+    cwrite(f"@*b{{{st_text}==>}} {get_timestamp()}{cescape(_output_filter(message))}{nl}")
+
     for arg in args:
         print(indent + _output_filter(str(arg)))
 

lib/spack/llnl/util/tty/colify.py

@@ -237,7 +237,6 @@ def transpose():
 def colified(
     elts: List[Any],
     cols: int = 0,
-    output: Optional[IO] = None,
     indent: int = 0,
     padding: int = 2,
     tty: Optional[bool] = None,

lib/spack/llnl/util/tty/color.py

@@ -59,9 +59,11 @@
 
 To output an @, use '@@'.  To output a } inside braces, use '}}'.
 """
+import os
 import re
 import sys
 from contextlib import contextmanager
+from typing import Optional
 
 
 class ColorParseError(Exception):
@@ -95,14 +97,34 @@ def __init__(self, message):
 }  # white
 
 # Regex to be used for color formatting
-color_re = r"@(?:@|\.|([*_])?([a-zA-Z])?(?:{((?:[^}]|}})*)})?)"
+COLOR_RE = re.compile(r"@(?:(@)|(\.)|([*_])?([a-zA-Z])?(?:{((?:[^}]|}})*)})?)")
 
 # Mapping from color arguments to values for tty.set_color
 color_when_values = {"always": True, "auto": None, "never": False}
 
-# Force color; None: Only color if stdout is a tty
-# True: Always colorize output, False: Never colorize output
-_force_color = None
+
+def _color_when_value(when):
+    """Raise a ValueError for an invalid color setting.
+
+    Valid values are 'always', 'never', and 'auto', or equivalently,
+    True, False, and None.
+    """
+    if when in color_when_values:
+        return color_when_values[when]
+    elif when not in color_when_values.values():
+        raise ValueError("Invalid color setting: %s" % when)
+    return when
+
+
+def _color_from_environ() -> Optional[bool]:
+    try:
+        return _color_when_value(os.environ.get("SPACK_COLOR", "auto"))
+    except ValueError:
+        return None
+
+
+#: When `None` colorize when stdout is tty, when `True` or `False` always or never colorize resp.
+_force_color = _color_from_environ()
 
 
 def try_enable_terminal_color_on_windows():
@@ -163,19 +185,6 @@ def _err_check(result, func, args):
             debug("Unable to support color on Windows terminal")
 
 
-def _color_when_value(when):
-    """Raise a ValueError for an invalid color setting.
-
-    Valid values are 'always', 'never', and 'auto', or equivalently,
-    True, False, and None.
-    """
-    if when in color_when_values:
-        return color_when_values[when]
-    elif when not in color_when_values.values():
-        raise ValueError("Invalid color setting: %s" % when)
-    return when
-
-
 def get_color_when():
     """Return whether commands should print color or not."""
     if _force_color is not None:
@@ -203,77 +212,64 @@ def color_when(value):
     set_color_when(old_value)
 
 
-class match_to_ansi:
-    def __init__(self, color=True, enclose=False, zsh=False):
-        self.color = _color_when_value(color)
-        self.enclose = enclose
-        self.zsh = zsh
-
-    def escape(self, s):
-        """Returns a TTY escape sequence for a color"""
-        if self.color:
-            if self.zsh:
-                result = rf"\e[0;{s}m"
-            else:
-                result = f"\033[{s}m"
-
-            if self.enclose:
-                result = rf"\[{result}\]"
-
-            return result
+def _escape(s: str, color: bool, enclose: bool, zsh: bool) -> str:
+    """Returns a TTY escape sequence for a color"""
+    if color:
+        if zsh:
+            result = rf"\e[0;{s}m"
         else:
-            return ""
+            result = f"\033[{s}m"
 
-    def __call__(self, match):
-        """Convert a match object generated by ``color_re`` into an ansi
-        color code. This can be used as a handler in ``re.sub``.
-        """
-        style, color, text = match.groups()
-        m = match.group(0)
+        if enclose:
+            result = rf"\[{result}\]"
 
-        if m == "@@":
-            return "@"
-        elif m == "@.":
-            return self.escape(0)
-        elif m == "@":
-            raise ColorParseError("Incomplete color format: '%s' in %s" % (m, match.string))
-
-        string = styles[style]
-        if color:
-            if color not in colors:
-                raise ColorParseError(
-                    "Invalid color specifier: '%s' in '%s'" % (color, match.string)
-                )
-            string += ";" + str(colors[color])
-
-        colored_text = ""
-        if text:
-            colored_text = text + self.escape(0)
-
-        return self.escape(string) + colored_text
+        return result
+    else:
+        return ""
 
 
-def colorize(string, **kwargs):
+def colorize(
+    string: str, color: Optional[bool] = None, enclose: bool = False, zsh: bool = False
+) -> str:
     """Replace all color expressions in a string with ANSI control codes.
 
     Args:
-        string (str): The string to replace
+        string: The string to replace
 
     Returns:
-        str: The filtered string
+        The filtered string
 
     Keyword Arguments:
-        color (bool): If False, output will be plain text without control
-            codes, for output to non-console devices.
-        enclose (bool): If True, enclose ansi color sequences with
+        color: If False, output will be plain text without control codes, for output to
+            non-console devices (default: automatically choose color or not)
+        enclose: If True, enclose ansi color sequences with
             square brackets to prevent misestimation of terminal width.
-        zsh (bool): If True, use zsh ansi codes instead of bash ones (for variables like PS1)
+        zsh: If True, use zsh ansi codes instead of bash ones (for variables like PS1)
     """
-    color = _color_when_value(kwargs.get("color", get_color_when()))
-    zsh = kwargs.get("zsh", False)
-    string = re.sub(color_re, match_to_ansi(color, kwargs.get("enclose")), string, zsh)
-    string = string.replace("}}", "}")
-    return string
+    color = color if color is not None else get_color_when()
+
+    def match_to_ansi(match):
+        """Convert a match object generated by ``COLOR_RE`` into an ansi
+        color code. This can be used as a handler in ``re.sub``.
+        """
+        escaped_at, dot, style, color_code, text = match.groups()
+
+        if escaped_at:
+            return "@"
+        elif dot:
+            return _escape(0, color, enclose, zsh)
+        elif not (style or color_code):
+            raise ColorParseError(
+                f"Incomplete color format: '{match.group(0)}' in '{match.string}'"
+            )
+
+        ansi_code = _escape(f"{styles[style]};{colors.get(color_code, '')}", color, enclose, zsh)
+        if text:
+            return f"{ansi_code}{text}{_escape(0, color, enclose, zsh)}"
+        else:
+            return ansi_code
+
+    return COLOR_RE.sub(match_to_ansi, string).replace("}}", "}")
 
 
 def clen(string):
@@ -305,7 +301,7 @@ def cprint(string, stream=None, color=None):
     cwrite(string + "\n", stream, color)
 
 
-def cescape(string):
+def cescape(string: str) -> str:
     """Escapes special characters needed for color codes.
 
     Replaces the following symbols with their equivalent literal forms:
@@ -321,10 +317,7 @@ def cescape(string):
     Returns:
         (str): the string with color codes escaped
     """
-    string = str(string)
-    string = string.replace("@", "@@")
-    string = string.replace("}", "}}")
-    return string
+    return string.replace("@", "@@").replace("}", "}}")
 
 
 class ColorStream:

lib/spack/spack/__init__.py

@@ -4,7 +4,7 @@
 # SPDX-License-Identifier: (Apache-2.0 OR MIT)
 
 #: PEP440 canonical <major>.<minor>.<micro>.<devN> string
-__version__ = "0.22.0.dev0"
+__version__ = "0.23.0.dev0"
 spack_version = __version__
 
 

lib/spack/spack/audit.py

@@ -254,8 +254,8 @@ def _search_duplicate_specs_in_externals(error_cls):
 
 @config_packages
 def _deprecated_preferences(error_cls):
-    """Search package preferences deprecated in v0.21 (and slated for removal in v0.22)"""
-    # TODO (v0.22): remove this audit as the attributes will not be allowed in config
+    """Search package preferences deprecated in v0.21 (and slated for removal in v0.23)"""
+    # TODO (v0.23): remove this audit as the attributes will not be allowed in config
     errors = []
     packages_yaml = spack.config.CONFIG.get_config("packages")
 
@@ -1046,7 +1046,7 @@ def _extracts_errors(triggers, summary):
     group="externals",
     tag="PKG-EXTERNALS",
     description="Sanity checks for external software detection",
-    kwargs=("pkgs",),
+    kwargs=("pkgs", "debug_log"),
 )
 
 
@@ -1069,7 +1069,7 @@ def packages_with_detection_tests():
 
 
 @external_detection
-def _test_detection_by_executable(pkgs, error_cls):
+def _test_detection_by_executable(pkgs, debug_log, error_cls):
     """Test drive external detection for packages"""
     import spack.detection
 
@@ -1095,6 +1095,7 @@ def _test_detection_by_executable(pkgs, error_cls):
         for idx, test_runner in enumerate(
             spack.detection.detection_tests(pkg_name, spack.repo.PATH)
         ):
+            debug_log(f"[{__file__}]: running test {idx} for package {pkg_name}")
             specs = test_runner.execute()
             expected_specs = test_runner.expected_specs
 
@@ -1111,4 +1112,75 @@ def _test_detection_by_executable(pkgs, error_cls):
                 details = [msg.format(s, idx) for s in sorted(not_expected)]
                 errors.append(error_cls(summary=summary, details=details))
 
+            matched_detection = []
+            for candidate in expected_specs:
+                try:
+                    idx = specs.index(candidate)
+                    matched_detection.append((candidate, specs[idx]))
+                except (AttributeError, ValueError):
+                    pass
+
+            def _compare_extra_attribute(_expected, _detected, *, _spec):
+                result = []
+                # Check items are of the same type
+                if not isinstance(_detected, type(_expected)):
+                    _summary = f'{pkg_name}: error when trying to detect "{_expected}"'
+                    _details = [f"{_detected} was detected instead"]
+                    return [error_cls(summary=_summary, details=_details)]
+
+                # If they are string expected is a regex
+                if isinstance(_expected, str):
+                    try:
+                        _regex = re.compile(_expected)
+                    except re.error:
+                        _summary = f'{pkg_name}: illegal regex in "{_spec}" extra attributes'
+                        _details = [f"{_expected} is not a valid regex"]
+                        return [error_cls(summary=_summary, details=_details)]
+
+                    if not _regex.match(_detected):
+                        _summary = (
+                            f'{pkg_name}: error when trying to match "{_expected}" '
+                            f"in extra attributes"
+                        )
+                        _details = [f"{_detected} does not match the regex"]
+                        return [error_cls(summary=_summary, details=_details)]
+
+                if isinstance(_expected, dict):
+                    _not_detected = set(_expected.keys()) - set(_detected.keys())
+                    if _not_detected:
+                        _summary = f"{pkg_name}: cannot detect some attributes for spec {_spec}"
+                        _details = [
+                            f'"{_expected}" was expected',
+                            f'"{_detected}" was detected',
+                        ] + [f'attribute "{s}" was not detected' for s in sorted(_not_detected)]
+                        result.append(error_cls(summary=_summary, details=_details))
+
+                    _common = set(_expected.keys()) & set(_detected.keys())
+                    for _key in _common:
+                        result.extend(
+                            _compare_extra_attribute(_expected[_key], _detected[_key], _spec=_spec)
+                        )
+
+                return result
+
+            for expected, detected in matched_detection:
+                # We might not want to test all attributes, so avoid not_expected
+                not_detected = set(expected.extra_attributes) - set(detected.extra_attributes)
+                if not_detected:
+                    summary = f"{pkg_name}: cannot detect some attributes for spec {expected}"
+                    details = [
+                        f'"{s}" was not detected [test_id={idx}]' for s in sorted(not_detected)
+                    ]
+                    errors.append(error_cls(summary=summary, details=details))
+
+                common = set(expected.extra_attributes) & set(detected.extra_attributes)
+                for key in common:
+                    errors.extend(
+                        _compare_extra_attribute(
+                            expected.extra_attributes[key],
+                            detected.extra_attributes[key],
+                            _spec=expected,
+                        )
+                    )
+
     return errors

lib/spack/spack/binary_distribution.py

@@ -29,6 +29,7 @@
 import llnl.util.lang
 import llnl.util.tty as tty
 from llnl.util.filesystem import BaseDirectoryVisitor, mkdirp, visit_directory_tree
+from llnl.util.symlink import readlink
 
 import spack.caches
 import spack.cmd
@@ -658,7 +659,7 @@ def get_buildfile_manifest(spec):
     #   2. paths are used as strings.
     for rel_path in visitor.symlinks:
         abs_path = os.path.join(root, rel_path)
-        link = os.readlink(abs_path)
+        link = readlink(abs_path)
         if os.path.isabs(link) and link.startswith(spack.store.STORE.layout.root):
             data["link_to_relocate"].append(rel_path)
 
@@ -2001,6 +2002,7 @@ def install_root_node(spec, unsigned=False, force=False, sha256=None):
     with spack.util.path.filter_padding():
         tty.msg('Installing "{0}" from a buildcache'.format(spec.format()))
         extract_tarball(spec, download_result, force)
+        spec.package.windows_establish_runtime_linkage()
         spack.hooks.post_install(spec, False)
         spack.store.STORE.db.add(spec, spack.store.STORE.layout)
 

lib/spack/spack/bootstrap/__init__.py

@@ -5,7 +5,13 @@
 """Function and classes needed to bootstrap Spack itself."""
 
 from .config import ensure_bootstrap_configuration, is_bootstrapping, store_path
-from .core import all_core_root_specs, ensure_core_dependencies, ensure_patchelf_in_path_or_raise
+from .core import (
+    all_core_root_specs,
+    ensure_clingo_importable_or_raise,
+    ensure_core_dependencies,
+    ensure_gpg_in_path_or_raise,
+    ensure_patchelf_in_path_or_raise,
+)
 from .environment import BootstrapEnvironment, ensure_environment_dependencies
 from .status import status_message
 
@@ -13,6 +19,8 @@
     "is_bootstrapping",
     "ensure_bootstrap_configuration",
     "ensure_core_dependencies",
+    "ensure_gpg_in_path_or_raise",
+    "ensure_clingo_importable_or_raise",
     "ensure_patchelf_in_path_or_raise",
     "all_core_root_specs",
     "ensure_environment_dependencies",

lib/spack/spack/bootstrap/_common.py

@@ -54,10 +54,14 @@ def _try_import_from_store(
     installed_specs = spack.store.STORE.db.query(query_spec, installed=True)
 
     for candidate_spec in installed_specs:
-        pkg = candidate_spec["python"].package
+        # previously bootstrapped specs may not have a python-venv dependency.
+        if candidate_spec.dependencies("python-venv"):
+            python, *_ = candidate_spec.dependencies("python-venv")
+        else:
+            python, *_ = candidate_spec.dependencies("python")
         module_paths = [
-            os.path.join(candidate_spec.prefix, pkg.purelib),
-            os.path.join(candidate_spec.prefix, pkg.platlib),
+            os.path.join(candidate_spec.prefix, python.package.purelib),
+            os.path.join(candidate_spec.prefix, python.package.platlib),
         ]
         path_before = list(sys.path)
 

lib/spack/spack/bootstrap/core.py

@@ -173,35 +173,14 @@ def _read_metadata(self, package_name: str) -> Any:
         return data
 
     def _install_by_hash(
-        self,
-        pkg_hash: str,
-        pkg_sha256: str,
-        index: List[spack.spec.Spec],
-        bincache_platform: spack.platforms.Platform,
+        self, pkg_hash: str, pkg_sha256: str, bincache_platform: spack.platforms.Platform
     ) -> None:
-        index_spec = next(x for x in index if x.dag_hash() == pkg_hash)
-        # Reconstruct the compiler that we need to use for bootstrapping
-        compiler_entry = {
-            "modules": [],
-            "operating_system": str(index_spec.os),
-            "paths": {
-                "cc": "/dev/null",
-                "cxx": "/dev/null",
-                "f77": "/dev/null",
-                "fc": "/dev/null",
-            },
-            "spec": str(index_spec.compiler),
-            "target": str(index_spec.target.family),
-        }
         with spack.platforms.use_platform(bincache_platform):
-            with spack.config.override("compilers", [{"compiler": compiler_entry}]):
-                spec_str = "/" + pkg_hash
-                query = spack.binary_distribution.BinaryCacheQuery(all_architectures=True)
-                matches = spack.store.find([spec_str], multiple=False, query_fn=query)
-                for match in matches:
-                    spack.binary_distribution.install_root_node(
-                        match, unsigned=True, force=True, sha256=pkg_sha256
-                    )
+            query = spack.binary_distribution.BinaryCacheQuery(all_architectures=True)
+            for match in spack.store.find([f"/{pkg_hash}"], multiple=False, query_fn=query):
+                spack.binary_distribution.install_root_node(
+                    match, unsigned=True, force=True, sha256=pkg_sha256
+                )
 
     def _install_and_test(
         self,
@@ -232,7 +211,7 @@ def _install_and_test(
                     continue
 
                 for _, pkg_hash, pkg_sha256 in item["binaries"]:
-                    self._install_by_hash(pkg_hash, pkg_sha256, index, bincache_platform)
+                    self._install_by_hash(pkg_hash, pkg_sha256, bincache_platform)
 
                 info: ConfigDictionary = {}
                 if test_fn(query_spec=abstract_spec, query_info=info):
@@ -291,10 +270,6 @@ def try_import(self, module: str, abstract_spec_str: str) -> bool:
         with spack_python_interpreter():
             # Add hint to use frontend operating system on Cray
             concrete_spec = spack.spec.Spec(abstract_spec_str + " ^" + spec_for_current_python())
-            # This is needed to help the old concretizer taking the `setuptools` dependency
-            # only when bootstrapping from sources on Python 3.12
-            if spec_for_current_python() == "python@3.12":
-                concrete_spec.constrain("+force_setuptools")
 
             if module == "clingo":
                 # TODO: remove when the old concretizer is deprecated  # pylint: disable=fixme
@@ -559,6 +534,41 @@ def ensure_patchelf_in_path_or_raise() -> spack.util.executable.Executable:
         )
 
 
+def ensure_winsdk_external_or_raise() -> None:
+    """Ensure the Windows SDK + WGL are available on system
+    If both of these package are found, the Spack user or bootstrap
+    configuration (depending on where Spack is running)
+    will be updated to include all versions and variants detected.
+    If either the WDK or WSDK are not found, this method will raise
+    a RuntimeError.
+
+    **NOTE:** This modifies the Spack config in the current scope,
+    either user or environment depending on the calling context.
+    This is different from all other current bootstrap dependency
+    checks.
+    """
+    if set(["win-sdk", "wgl"]).issubset(spack.config.get("packages").keys()):
+        return
+    externals = spack.detection.by_path(["win-sdk", "wgl"])
+    if not set(["win-sdk", "wgl"]) == externals.keys():
+        missing_packages_lst = []
+        if "wgl" not in externals:
+            missing_packages_lst.append("wgl")
+        if "win-sdk" not in externals:
+            missing_packages_lst.append("win-sdk")
+        missing_packages = " & ".join(missing_packages_lst)
+        raise RuntimeError(
+            f"Unable to find the {missing_packages}, please install these packages \
+via the Visual Studio installer \
+before proceeding with Spack or provide the path to a non standard install with \
+'spack external find --path'"
+        )
+    # wgl/sdk are not required for bootstrapping Spack, but
+    # are required for building anything non trivial
+    # add to user config so they can be used by subsequent Spack ops
+    spack.detection.update_configuration(externals, buildable=False)
+
+
 def ensure_core_dependencies() -> None:
     """Ensure the presence of all the core dependencies."""
     if sys.platform.lower() == "linux":

lib/spack/spack/bootstrap/environment.py

@@ -3,13 +3,11 @@
 #
 # SPDX-License-Identifier: (Apache-2.0 OR MIT)
 """Bootstrap non-core Spack dependencies from an environment."""
-import glob
 import hashlib
 import os
 import pathlib
 import sys
-import warnings
-from typing import List
+from typing import Iterable, List
 
 import archspec.cpu
 
@@ -28,6 +26,16 @@
 class BootstrapEnvironment(spack.environment.Environment):
     """Environment to install dependencies of Spack for a given interpreter and architecture"""
 
+    def __init__(self) -> None:
+        if not self.spack_yaml().exists():
+            self._write_spack_yaml_file()
+        super().__init__(self.environment_root())
+
+        # Remove python package roots created before python-venv was introduced
+        for s in self.concrete_roots():
+            if "python" in s.package.extendees and not s.dependencies("python-venv"):
+                self.deconcretize(s)
+
     @classmethod
     def spack_dev_requirements(cls) -> List[str]:
         """Spack development requirements"""
@@ -59,31 +67,19 @@ def view_root(cls) -> pathlib.Path:
         return cls.environment_root().joinpath("view")
 
     @classmethod
-    def pythonpaths(cls) -> List[str]:
-        """Paths to be added to sys.path or PYTHONPATH"""
-        python_dir_part = f"python{'.'.join(str(x) for x in sys.version_info[:2])}"
-        glob_expr = str(cls.view_root().joinpath("**", python_dir_part, "**"))
-        result = glob.glob(glob_expr)
-        if not result:
-            msg = f"Cannot find any Python path in {cls.view_root()}"
-            warnings.warn(msg)
-        return result
-
-    @classmethod
-    def bin_dirs(cls) -> List[pathlib.Path]:
+    def bin_dir(cls) -> pathlib.Path:
         """Paths to be added to PATH"""
-        return [cls.view_root().joinpath("bin")]
+        return cls.view_root().joinpath("bin")
+
+    def python_dirs(self) -> Iterable[pathlib.Path]:
+        python = next(s for s in self.all_specs_generator() if s.name == "python-venv").package
+        return {self.view_root().joinpath(p) for p in (python.platlib, python.purelib)}
 
     @classmethod
     def spack_yaml(cls) -> pathlib.Path:
         """Environment spack.yaml file"""
         return cls.environment_root().joinpath("spack.yaml")
 
-    def __init__(self) -> None:
-        if not self.spack_yaml().exists():
-            self._write_spack_yaml_file()
-        super().__init__(self.environment_root())
-
     def update_installations(self) -> None:
         """Update the installations of this environment."""
         log_enabled = tty.is_debug() or tty.is_verbose()
@@ -100,21 +96,13 @@ def update_installations(self) -> None:
                 self.install_all()
                 self.write(regenerate=True)
 
-    def update_syspath_and_environ(self) -> None:
-        """Update ``sys.path`` and the PATH, PYTHONPATH environment variables to point to
-        the environment view.
-        """
-        # Do minimal modifications to sys.path and environment variables. In particular, pay
-        # attention to have the smallest PYTHONPATH / sys.path possible, since that may impact
-        # the performance of the current interpreter
-        sys.path.extend(self.pythonpaths())
-        os.environ["PATH"] = os.pathsep.join(
-            [str(x) for x in self.bin_dirs()] + os.environ.get("PATH", "").split(os.pathsep)
-        )
-        os.environ["PYTHONPATH"] = os.pathsep.join(
-            os.environ.get("PYTHONPATH", "").split(os.pathsep)
-            + [str(x) for x in self.pythonpaths()]
-        )
+    def load(self) -> None:
+        """Update PATH and sys.path."""
+        # Make executables available (shouldn't need PYTHONPATH)
+        os.environ["PATH"] = f"{self.bin_dir()}{os.pathsep}{os.environ.get('PATH', '')}"
+
+        # Spack itself imports pytest
+        sys.path.extend(str(p) for p in self.python_dirs())
 
     def _write_spack_yaml_file(self) -> None:
         tty.msg(
@@ -164,4 +152,4 @@ def ensure_environment_dependencies() -> None:
     _add_externals_if_missing()
     with BootstrapEnvironment() as env:
         env.update_installations()
-        env.update_syspath_and_environ()
+        env.load()

lib/spack/spack/build_environment.py

@@ -43,7 +43,7 @@
 from collections import defaultdict
 from enum import Flag, auto
 from itertools import chain
-from typing import List, Tuple
+from typing import Dict, List, Set, Tuple
 
 import llnl.util.tty as tty
 from llnl.string import plural
@@ -57,8 +57,10 @@
 import spack.build_systems.meson
 import spack.build_systems.python
 import spack.builder
+import spack.compilers
 import spack.config
 import spack.deptypes as dt
+import spack.error
 import spack.main
 import spack.package_base
 import spack.paths
@@ -66,6 +68,7 @@
 import spack.repo
 import spack.schema.environment
 import spack.spec
+import spack.stage
 import spack.store
 import spack.subprocess_context
 import spack.user_environment
@@ -78,7 +81,7 @@
 from spack.installer import InstallError
 from spack.util.cpus import determine_number_of_jobs
 from spack.util.environment import (
-    SYSTEM_DIRS,
+    SYSTEM_DIR_CASE_ENTRY,
     EnvironmentModifications,
     env_flag,
     filter_system_paths,
@@ -101,9 +104,13 @@
 # Spack's compiler wrappers.
 #
 SPACK_ENV_PATH = "SPACK_ENV_PATH"
+SPACK_MANAGED_DIRS = "SPACK_MANAGED_DIRS"
 SPACK_INCLUDE_DIRS = "SPACK_INCLUDE_DIRS"
 SPACK_LINK_DIRS = "SPACK_LINK_DIRS"
 SPACK_RPATH_DIRS = "SPACK_RPATH_DIRS"
+SPACK_STORE_INCLUDE_DIRS = "SPACK_STORE_INCLUDE_DIRS"
+SPACK_STORE_LINK_DIRS = "SPACK_STORE_LINK_DIRS"
+SPACK_STORE_RPATH_DIRS = "SPACK_STORE_RPATH_DIRS"
 SPACK_RPATH_DEPS = "SPACK_RPATH_DEPS"
 SPACK_LINK_DEPS = "SPACK_LINK_DEPS"
 SPACK_PREFIX = "SPACK_PREFIX"
@@ -416,7 +423,7 @@ def set_compiler_environment_variables(pkg, env):
 
     env.set("SPACK_COMPILER_SPEC", str(spec.compiler))
 
-    env.set("SPACK_SYSTEM_DIRS", ":".join(SYSTEM_DIRS))
+    env.set("SPACK_SYSTEM_DIRS", SYSTEM_DIR_CASE_ENTRY)
 
     compiler.setup_custom_environment(pkg, env)
 
@@ -544,9 +551,26 @@ def update_compiler_args_for_dep(dep):
     include_dirs = list(dedupe(filter_system_paths(include_dirs)))
     rpath_dirs = list(dedupe(filter_system_paths(rpath_dirs)))
 
-    env.set(SPACK_LINK_DIRS, ":".join(link_dirs))
-    env.set(SPACK_INCLUDE_DIRS, ":".join(include_dirs))
-    env.set(SPACK_RPATH_DIRS, ":".join(rpath_dirs))
+    # Spack managed directories include the stage, store and upstream stores. We extend this with
+    # their real paths to make it more robust (e.g. /tmp vs /private/tmp on macOS).
+    spack_managed_dirs: Set[str] = {
+        spack.stage.get_stage_root(),
+        spack.store.STORE.db.root,
+        *(db.root for db in spack.store.STORE.db.upstream_dbs),
+    }
+    spack_managed_dirs.update([os.path.realpath(p) for p in spack_managed_dirs])
+
+    env.set(SPACK_MANAGED_DIRS, "|".join(f'"{p}/"*' for p in sorted(spack_managed_dirs)))
+    is_spack_managed = lambda p: any(p.startswith(store) for store in spack_managed_dirs)
+    link_dirs_spack, link_dirs_system = stable_partition(link_dirs, is_spack_managed)
+    include_dirs_spack, include_dirs_system = stable_partition(include_dirs, is_spack_managed)
+    rpath_dirs_spack, rpath_dirs_system = stable_partition(rpath_dirs, is_spack_managed)
+    env.set(SPACK_LINK_DIRS, ":".join(link_dirs_system))
+    env.set(SPACK_INCLUDE_DIRS, ":".join(include_dirs_system))
+    env.set(SPACK_RPATH_DIRS, ":".join(rpath_dirs_system))
+    env.set(SPACK_STORE_LINK_DIRS, ":".join(link_dirs_spack))
+    env.set(SPACK_STORE_INCLUDE_DIRS, ":".join(include_dirs_spack))
+    env.set(SPACK_STORE_RPATH_DIRS, ":".join(rpath_dirs_spack))
 
 
 def set_package_py_globals(pkg, context: Context = Context.BUILD):
@@ -583,10 +607,22 @@ def set_package_py_globals(pkg, context: Context = Context.BUILD):
     # Put spack compiler paths in module scope. (Some packages use it
     # in setup_run_environment etc, so don't put it context == build)
     link_dir = spack.paths.build_env_path
-    module.spack_cc = os.path.join(link_dir, pkg.compiler.link_paths["cc"])
-    module.spack_cxx = os.path.join(link_dir, pkg.compiler.link_paths["cxx"])
-    module.spack_f77 = os.path.join(link_dir, pkg.compiler.link_paths["f77"])
-    module.spack_fc = os.path.join(link_dir, pkg.compiler.link_paths["fc"])
+    pkg_compiler = None
+    try:
+        pkg_compiler = pkg.compiler
+    except spack.compilers.NoCompilerForSpecError as e:
+        tty.debug(f"cannot set 'spack_cc': {str(e)}")
+
+    if pkg_compiler is not None:
+        module.spack_cc = os.path.join(link_dir, pkg_compiler.link_paths["cc"])
+        module.spack_cxx = os.path.join(link_dir, pkg_compiler.link_paths["cxx"])
+        module.spack_f77 = os.path.join(link_dir, pkg_compiler.link_paths["f77"])
+        module.spack_fc = os.path.join(link_dir, pkg_compiler.link_paths["fc"])
+    else:
+        module.spack_cc = None
+        module.spack_cxx = None
+        module.spack_f77 = None
+        module.spack_fc = None
 
     # Useful directories within the prefix are encapsulated in
     # a Prefix object.
@@ -694,12 +730,28 @@ def _static_to_shared_library(arch, compiler, static_lib, shared_lib=None, **kwa
     return compiler(*compiler_args, output=compiler_output)
 
 
-def get_rpath_deps(pkg):
-    """Return immediate or transitive RPATHs depending on the package."""
-    if pkg.transitive_rpaths:
-        return [d for d in pkg.spec.traverse(root=False, deptype=("link"))]
-    else:
-        return pkg.spec.dependencies(deptype="link")
+def _get_rpath_deps_from_spec(
+    spec: spack.spec.Spec, transitive_rpaths: bool
+) -> List[spack.spec.Spec]:
+    if not transitive_rpaths:
+        return spec.dependencies(deptype=dt.LINK)
+
+    by_name: Dict[str, spack.spec.Spec] = {}
+
+    for dep in spec.traverse(root=False, deptype=dt.LINK):
+        lookup = by_name.get(dep.name)
+        if lookup is None:
+            by_name[dep.name] = dep
+        elif lookup.version < dep.version:
+            by_name[dep.name] = dep
+
+    return list(by_name.values())
+
+
+def get_rpath_deps(pkg: spack.package_base.PackageBase) -> List[spack.spec.Spec]:
+    """Return immediate or transitive dependencies (depending on the package) that need to be
+    rpath'ed. If a package occurs multiple times, the newest version is kept."""
+    return _get_rpath_deps_from_spec(pkg.spec, pkg.transitive_rpaths)
 
 
 def get_rpaths(pkg):

lib/spack/spack/build_systems/autotools.py

@@ -434,11 +434,6 @@ def _do_patch_libtool(self):
                 r"crtendS\.o",
             ]:
                 x.filter(regex=(rehead + o), repl="")
-        elif self.pkg.compiler.name == "dpcpp":
-            # Hack to filter out spurious predep_objects when building with Intel dpcpp
-            # (see https://github.com/spack/spack/issues/32863):
-            x.filter(regex=r"^(predep_objects=.*)/tmp/conftest-[0-9A-Fa-f]+\.o", repl=r"\1")
-            x.filter(regex=r"^(predep_objects=.*)/tmp/a-[0-9A-Fa-f]+\.o", repl=r"\1")
         elif self.pkg.compiler.name == "nag":
             for tag in ["fc", "f77"]:
                 marker = markers[tag]

lib/spack/spack/build_systems/cached_cmake.py

@@ -4,6 +4,7 @@
 # SPDX-License-Identifier: (Apache-2.0 OR MIT)
 import collections.abc
 import os
+import re
 from typing import Tuple
 
 import llnl.util.filesystem as fs
@@ -15,6 +16,12 @@
 from .cmake import CMakeBuilder, CMakePackage
 
 
+def spec_uses_toolchain(spec):
+    gcc_toolchain_regex = re.compile(".*gcc-toolchain.*")
+    using_toolchain = list(filter(gcc_toolchain_regex.match, spec.compiler_flags["cxxflags"]))
+    return using_toolchain
+
+
 def cmake_cache_path(name, value, comment="", force=False):
     """Generate a string for a cmake cache variable"""
     force_str = " FORCE" if force else ""
@@ -213,7 +220,7 @@ def initconfig_mpi_entries(self):
         else:
             # starting with cmake 3.10, FindMPI expects MPIEXEC_EXECUTABLE
             # vs the older versions which expect MPIEXEC
-            if self.pkg.spec["cmake"].satisfies("@3.10:"):
+            if spec["cmake"].satisfies("@3.10:"):
                 entries.append(cmake_cache_path("MPIEXEC_EXECUTABLE", mpiexec))
             else:
                 entries.append(cmake_cache_path("MPIEXEC", mpiexec))
@@ -248,12 +255,17 @@ def initconfig_hardware_entries(self):
             # Include the deprecated CUDA_TOOLKIT_ROOT_DIR for supporting BLT packages
             entries.append(cmake_cache_path("CUDA_TOOLKIT_ROOT_DIR", cudatoolkitdir))
 
-            archs = spec.variants["cuda_arch"].value
-            if archs[0] != "none":
-                arch_str = ";".join(archs)
-                entries.append(
-                    cmake_cache_string("CMAKE_CUDA_ARCHITECTURES", "{0}".format(arch_str))
-                )
+            # CUDA_FLAGS
+            cuda_flags = []
+
+            if not spec.satisfies("cuda_arch=none"):
+                cuda_archs = ";".join(spec.variants["cuda_arch"].value)
+                entries.append(cmake_cache_string("CMAKE_CUDA_ARCHITECTURES", cuda_archs))
+
+            if spec_uses_toolchain(spec):
+                cuda_flags.append("-Xcompiler {}".format(spec_uses_toolchain(spec)[0]))
+
+            entries.append(cmake_cache_string("CMAKE_CUDA_FLAGS", " ".join(cuda_flags)))
 
         if "+rocm" in spec:
             entries.append("#------------------{0}".format("-" * 30))
@@ -262,9 +274,6 @@ def initconfig_hardware_entries(self):
 
             # Explicitly setting HIP_ROOT_DIR may be a patch that is no longer necessary
             entries.append(cmake_cache_path("HIP_ROOT_DIR", "{0}".format(spec["hip"].prefix)))
-            entries.append(
-                cmake_cache_path("HIP_CXX_COMPILER", "{0}".format(self.spec["hip"].hipcc))
-            )
             llvm_bin = spec["llvm-amdgpu"].prefix.bin
             llvm_prefix = spec["llvm-amdgpu"].prefix
             # Some ROCm systems seem to point to /<path>/rocm-<ver>/ and
@@ -277,11 +286,9 @@ def initconfig_hardware_entries(self):
             archs = self.spec.variants["amdgpu_target"].value
             if archs[0] != "none":
                 arch_str = ";".join(archs)
-                entries.append(
-                    cmake_cache_string("CMAKE_HIP_ARCHITECTURES", "{0}".format(arch_str))
-                )
-                entries.append(cmake_cache_string("AMDGPU_TARGETS", "{0}".format(arch_str)))
-                entries.append(cmake_cache_string("GPU_TARGETS", "{0}".format(arch_str)))
+                entries.append(cmake_cache_string("CMAKE_HIP_ARCHITECTURES", arch_str))
+                entries.append(cmake_cache_string("AMDGPU_TARGETS", arch_str))
+                entries.append(cmake_cache_string("GPU_TARGETS", arch_str))
 
         return entries
 

lib/spack/spack/build_systems/cargo.py

@@ -16,7 +16,7 @@
 
 
 class CargoPackage(spack.package_base.PackageBase):
-    """Specialized class for packages built using a Makefiles."""
+    """Specialized class for packages built using cargo."""
 
     #: This attribute is used in UI queries that need to know the build
     #: system base class

lib/spack/spack/build_systems/cmake.py

@@ -39,16 +39,11 @@ def _maybe_set_python_hints(pkg: spack.package_base.PackageBase, args: List[str]
     """Set the PYTHON_EXECUTABLE, Python_EXECUTABLE, and Python3_EXECUTABLE CMake variables
     if the package has Python as build or link dep and ``find_python_hints`` is set to True. See
     ``find_python_hints`` for context."""
-    if not getattr(pkg, "find_python_hints", False):
+    if not getattr(pkg, "find_python_hints", False) or not pkg.spec.dependencies(
+        "python", dt.BUILD | dt.LINK
+    ):
         return
-    pythons = pkg.spec.dependencies("python", dt.BUILD | dt.LINK)
-    if len(pythons) != 1:
-        return
-    try:
-        python_executable = pythons[0].package.command.path
-    except RuntimeError:
-        return
-
+    python_executable = pkg.spec["python"].command.path
     args.extend(
         [
             CMakeBuilder.define("PYTHON_EXECUTABLE", python_executable),

lib/spack/spack/build_systems/compiler.py

@@ -0,0 +1,144 @@
+# Copyright 2013-2023 Lawrence Livermore National Security, LLC and other
+# Spack Project Developers. See the top-level COPYRIGHT file for details.
+#
+# SPDX-License-Identifier: (Apache-2.0 OR MIT)
+import itertools
+import os
+import pathlib
+import re
+import sys
+from typing import Dict, List, Sequence, Tuple, Union
+
+import llnl.util.tty as tty
+from llnl.util.lang import classproperty
+
+import spack.compiler
+import spack.package_base
+
+# Local "type" for type hints
+Path = Union[str, pathlib.Path]
+
+
+class CompilerPackage(spack.package_base.PackageBase):
+    """A Package mixin for all common logic for packages that implement compilers"""
+
+    # TODO: how do these play nicely with other tags
+    tags: Sequence[str] = ["compiler"]
+
+    #: Optional suffix regexes for searching for this type of compiler.
+    #: Suffixes are used by some frameworks, e.g. macports uses an '-mp-X.Y'
+    #: version suffix for gcc.
+    compiler_suffixes: List[str] = [r"-.*"]
+
+    #: Optional prefix regexes for searching for this compiler
+    compiler_prefixes: List[str] = []
+
+    #: Compiler argument(s) that produces version information
+    #: If multiple arguments, the earlier arguments must produce errors when invalid
+    compiler_version_argument: Union[str, Tuple[str]] = "-dumpversion"
+
+    #: Regex used to extract version from compiler's output
+    compiler_version_regex: str = "(.*)"
+
+    #: Static definition of languages supported by this class
+    compiler_languages: Sequence[str] = ["c", "cxx", "fortran"]
+
+    def __init__(self, spec: "spack.spec.Spec"):
+        super().__init__(spec)
+        msg = f"Supported languages for {spec} are not a subset of possible supported languages"
+        msg += f"    supports: {self.supported_languages}, valid values: {self.compiler_languages}"
+        assert set(self.supported_languages) <= set(self.compiler_languages), msg
+
+    @property
+    def supported_languages(self) -> Sequence[str]:
+        """Dynamic definition of languages supported by this package"""
+        return self.compiler_languages
+
+    @classproperty
+    def compiler_names(cls) -> Sequence[str]:
+        """Construct list of compiler names from per-language names"""
+        names = []
+        for language in cls.compiler_languages:
+            names.extend(getattr(cls, f"{language}_names"))
+        return names
+
+    @classproperty
+    def executables(cls) -> Sequence[str]:
+        """Construct executables for external detection from names, prefixes, and suffixes."""
+        regexp_fmt = r"^({0}){1}({2})$"
+        prefixes = [""] + cls.compiler_prefixes
+        suffixes = [""] + cls.compiler_suffixes
+        if sys.platform == "win32":
+            ext = r"\.(?:exe|bat)"
+            suffixes += [suf + ext for suf in suffixes]
+        return [
+            regexp_fmt.format(prefix, re.escape(name), suffix)
+            for prefix, name, suffix in itertools.product(prefixes, cls.compiler_names, suffixes)
+        ]
+
+    @classmethod
+    def determine_version(cls, exe: Path):
+        version_argument = cls.compiler_version_argument
+        if isinstance(version_argument, str):
+            version_argument = (version_argument,)
+
+        for va in version_argument:
+            try:
+                output = spack.compiler.get_compiler_version_output(exe, va)
+                match = re.search(cls.compiler_version_regex, output)
+                if match:
+                    return ".".join(match.groups())
+            except spack.util.executable.ProcessError:
+                pass
+            except Exception as e:
+                tty.debug(
+                    f"[{__file__}] Cannot detect a valid version for the executable "
+                    f"{str(exe)}, for package '{cls.name}': {e}"
+                )
+
+    @classmethod
+    def compiler_bindir(cls, prefix: Path) -> Path:
+        """Overridable method for the location of the compiler bindir within the preifx"""
+        return os.path.join(prefix, "bin")
+
+    @classmethod
+    def determine_compiler_paths(cls, exes: Sequence[Path]) -> Dict[str, Path]:
+        """Compute the paths to compiler executables associated with this package
+
+        This is a helper method for ``determine_variants`` to compute the ``extra_attributes``
+        to include with each spec object."""
+        # There are often at least two copies (not symlinks) of each compiler executable in the
+        # same directory: one with a canonical name, e.g. "gfortran", and another one with the
+        # target prefix, e.g. "x86_64-pc-linux-gnu-gfortran". There also might be a copy of "gcc"
+        # with the version suffix, e.g. "x86_64-pc-linux-gnu-gcc-6.3.0". To ensure the consistency
+        # of values in the "paths" dictionary (i.e. we prefer all of them to reference copies
+        # with canonical names if possible), we iterate over the executables in the reversed sorted
+        # order:
+        # First pass over languages identifies exes that are perfect matches for canonical names
+        # Second pass checks for names with prefix/suffix
+        # Second pass is sorted by language name length because longer named languages
+        # e.g. cxx can often contain the names of shorter named languages
+        # e.g. c (e.g. clang/clang++)
+        paths = {}
+        exes = sorted(exes, reverse=True)
+        languages = {
+            lang: getattr(cls, f"{lang}_names")
+            for lang in sorted(cls.compiler_languages, key=len, reverse=True)
+        }
+        for exe in exes:
+            for lang, names in languages.items():
+                if os.path.basename(exe) in names:
+                    paths[lang] = exe
+                    break
+            else:
+                for lang, names in languages.items():
+                    if any(name in os.path.basename(exe) for name in names):
+                        paths[lang] = exe
+                        break
+
+        return paths
+
+    @classmethod
+    def determine_variants(cls, exes: Sequence[Path], version_str: str) -> Tuple:
+        # path determination is separated so it can be reused in subclasses
+        return "", {"compilers": cls.determine_compiler_paths(exes=exes)}

lib/spack/spack/build_systems/makefile.py

@@ -21,7 +21,7 @@
 
 
 class MakefilePackage(spack.package_base.PackageBase):
-    """Specialized class for packages built using a Makefiles."""
+    """Specialized class for packages built using Makefiles."""
 
     #: This attribute is used in UI queries that need to know the build
     #: system base class

lib/spack/spack/build_systems/nmake.py

@@ -145,7 +145,7 @@ def install(self, pkg, spec, prefix):
         opts += self.nmake_install_args()
         if self.makefile_name:
             opts.append("/F{}".format(self.makefile_name))
-        opts.append(self.define("PREFIX", prefix))
+        opts.append(self.define("PREFIX", fs.windows_sfn(prefix)))
         with fs.working_dir(self.build_directory):
             inspect.getmodule(self.pkg).nmake(
                 *opts, *self.install_targets, ignore_quotes=self.ignore_quotes

lib/spack/spack/build_systems/oneapi.py

@@ -14,7 +14,7 @@
 from llnl.util.link_tree import LinkTree
 
 from spack.build_environment import dso_suffix
-from spack.directives import conflicts, variant
+from spack.directives import conflicts, license, redistribute, variant
 from spack.package_base import InstallError
 from spack.util.environment import EnvironmentModifications
 from spack.util.executable import Executable
@@ -26,10 +26,11 @@ class IntelOneApiPackage(Package):
     """Base class for Intel oneAPI packages."""
 
     homepage = "https://software.intel.com/oneapi"
+    license("https://intel.ly/393CijO")
 
     # oneAPI license does not allow mirroring outside of the
     # organization (e.g. University/Company).
-    redistribute_source = False
+    redistribute(source=False, binary=False)
 
     for c in [
         "target=ppc64:",

lib/spack/spack/build_systems/python.py

@@ -138,16 +138,21 @@ def view_file_conflicts(self, view, merge_map):
         return conflicts
 
     def add_files_to_view(self, view, merge_map, skip_if_exists=True):
-        # Patch up shebangs to the python linked in the view only if python is built by Spack.
-        if not self.extendee_spec or self.extendee_spec.external:
+        # Patch up shebangs if the package extends Python and we put a Python interpreter in the
+        # view.
+        if not self.extendee_spec:
+            return super().add_files_to_view(view, merge_map, skip_if_exists)
+
+        python, *_ = self.spec.dependencies("python-venv") or self.spec.dependencies("python")
+
+        if python.external:
             return super().add_files_to_view(view, merge_map, skip_if_exists)
 
         # We only patch shebangs in the bin directory.
         copied_files: Dict[Tuple[int, int], str] = {}  # File identifier -> source
         delayed_links: List[Tuple[str, str]] = []  # List of symlinks from merge map
-
         bin_dir = self.spec.prefix.bin
-        python_prefix = self.extendee_spec.prefix
+
         for src, dst in merge_map.items():
             if skip_if_exists and os.path.lexists(dst):
                 continue
@@ -168,7 +173,7 @@ def add_files_to_view(self, view, merge_map, skip_if_exists=True):
                 copied_files[(s.st_dev, s.st_ino)] = dst
                 shutil.copy2(src, dst)
                 fs.filter_file(
-                    python_prefix, os.path.abspath(view.get_projection_for_spec(self.spec)), dst
+                    python.prefix, os.path.abspath(view.get_projection_for_spec(self.spec)), dst
                 )
             else:
                 view.link(src, dst)
@@ -199,14 +204,13 @@ def remove_files_from_view(self, view, merge_map):
                 ignore_namespace = True
 
         bin_dir = self.spec.prefix.bin
-        global_view = self.extendee_spec.prefix == view.get_projection_for_spec(self.spec)
 
         to_remove = []
         for src, dst in merge_map.items():
             if ignore_namespace and namespace_init(dst):
                 continue
 
-            if global_view or not fs.path_contains_subdirectory(src, bin_dir):
+            if not fs.path_contains_subdirectory(src, bin_dir):
                 to_remove.append(dst)
             else:
                 os.remove(dst)
@@ -362,6 +366,12 @@ def list_url(cls) -> Optional[str]:  # type: ignore[override]
             return f"https://pypi.org/simple/{name}/"
         return None
 
+    @property
+    def python_spec(self):
+        """Get python-venv if it exists or python otherwise."""
+        python, *_ = self.spec.dependencies("python-venv") or self.spec.dependencies("python")
+        return python
+
     @property
     def headers(self) -> HeaderList:
         """Discover header files in platlib."""
@@ -371,8 +381,9 @@ def headers(self) -> HeaderList:
 
         # Headers should only be in include or platlib, but no harm in checking purelib too
         include = self.prefix.join(self.spec["python"].package.include).join(name)
-        platlib = self.prefix.join(self.spec["python"].package.platlib).join(name)
-        purelib = self.prefix.join(self.spec["python"].package.purelib).join(name)
+        python = self.python_spec
+        platlib = self.prefix.join(python.package.platlib).join(name)
+        purelib = self.prefix.join(python.package.purelib).join(name)
 
         headers_list = map(fs.find_all_headers, [include, platlib, purelib])
         headers = functools.reduce(operator.add, headers_list)
@@ -391,8 +402,9 @@ def libs(self) -> LibraryList:
         name = self.spec.name[3:]
 
         # Libraries should only be in platlib, but no harm in checking purelib too
-        platlib = self.prefix.join(self.spec["python"].package.platlib).join(name)
-        purelib = self.prefix.join(self.spec["python"].package.purelib).join(name)
+        python = self.python_spec
+        platlib = self.prefix.join(python.package.platlib).join(name)
+        purelib = self.prefix.join(python.package.purelib).join(name)
 
         find_all_libraries = functools.partial(fs.find_all_libraries, recursive=True)
         libs_list = map(find_all_libraries, [platlib, purelib])
@@ -504,6 +516,8 @@ def global_options(self, spec: Spec, prefix: Prefix) -> Iterable[str]:
 
     def install(self, pkg: PythonPackage, spec: Spec, prefix: Prefix) -> None:
         """Install everything from build directory."""
+        pip = spec["python"].command
+        pip.add_default_arg("-m", "pip")
 
         args = PythonPipBuilder.std_args(pkg) + [f"--prefix={prefix}"]
 
@@ -519,14 +533,6 @@ def install(self, pkg: PythonPackage, spec: Spec, prefix: Prefix) -> None:
         else:
             args.append(".")
 
-        pip = spec["python"].command
-        # Hide user packages, since we don't have build isolation. This is
-        # necessary because pip / setuptools may run hooks from arbitrary
-        # packages during the build. There is no equivalent variable to hide
-        # system packages, so this is not reliable for external Python.
-        pip.add_default_env("PYTHONNOUSERSITE", "1")
-        pip.add_default_arg("-m")
-        pip.add_default_arg("pip")
         with fs.working_dir(self.build_directory):
             pip(*args)
 

lib/spack/spack/build_systems/rocm.py

@@ -80,6 +80,7 @@
 import spack.variant
 from spack.directives import conflicts, depends_on, variant
 from spack.package_base import PackageBase
+from spack.util.environment import EnvironmentModifications
 
 
 class ROCmPackage(PackageBase):
@@ -156,30 +157,23 @@ def hip_flags(amdgpu_target):
         archs = ",".join(amdgpu_target)
         return "--amdgpu-target={0}".format(archs)
 
-    # ASAN
-    @staticmethod
-    def asan_on(env, llvm_path):
+    def asan_on(self, env: EnvironmentModifications):
+        llvm_path = self.spec["llvm-amdgpu"].prefix
         env.set("CC", llvm_path + "/bin/clang")
         env.set("CXX", llvm_path + "/bin/clang++")
         env.set("ASAN_OPTIONS", "detect_leaks=0")
 
-        for root, dirs, files in os.walk(llvm_path):
+        for root, _, files in os.walk(llvm_path):
             if "libclang_rt.asan-x86_64.so" in files:
                 asan_lib_path = root
         env.prepend_path("LD_LIBRARY_PATH", asan_lib_path)
-        SET_DWARF_VERSION_4 = ""
-        try:
-            # This will throw an error if imported on a non-Linux platform.
-            import distro
-
-            distname = distro.id()
-        except ImportError:
-            distname = "unknown"
-        if "rhel" in distname or "sles" in distname:
+        if "rhel" in self.spec.os or "sles" in self.spec.os:
             SET_DWARF_VERSION_4 = "-gdwarf-5"
+        else:
+            SET_DWARF_VERSION_4 = ""
 
-        env.set("CFLAGS", "-fsanitize=address -shared-libasan -g " + SET_DWARF_VERSION_4)
-        env.set("CXXFLAGS", "-fsanitize=address -shared-libasan -g " + SET_DWARF_VERSION_4)
+        env.set("CFLAGS", f"-fsanitize=address -shared-libasan -g {SET_DWARF_VERSION_4}")
+        env.set("CXXFLAGS", f"-fsanitize=address -shared-libasan -g {SET_DWARF_VERSION_4}")
         env.set("LDFLAGS", "-Wl,--enable-new-dtags -fuse-ld=lld  -fsanitize=address -g -Wl,")
 
     # HIP version vs Architecture

lib/spack/spack/ci.py

@@ -16,8 +16,8 @@
 import tempfile
 import time
 import zipfile
-from collections import namedtuple
-from typing import List, Optional
+from collections import defaultdict, namedtuple
+from typing import Dict, List, Optional, Set, Tuple
 from urllib.error import HTTPError, URLError
 from urllib.parse import urlencode
 from urllib.request import HTTPHandler, Request, build_opener
@@ -44,6 +44,7 @@
 from spack import traverse
 from spack.error import SpackError
 from spack.reporters import CDash, CDashConfiguration
+from spack.reporters.cdash import SPACK_CDASH_TIMEOUT
 from spack.reporters.cdash import build_stamp as cdash_build_stamp
 
 # See https://docs.gitlab.com/ee/ci/yaml/#retry for descriptions of conditions
@@ -113,54 +114,24 @@ def _remove_reserved_tags(tags):
     return [tag for tag in tags if tag not in SPACK_RESERVED_TAGS]
 
 
-def _spec_deps_key(s):
+def _spec_ci_label(s):
     return f"{s.name}/{s.dag_hash(7)}"
 
 
-def _add_dependency(spec_label, dep_label, deps):
-    if spec_label == dep_label:
-        return
-    if spec_label not in deps:
-        deps[spec_label] = set()
-    deps[spec_label].add(dep_label)
+PlainNodes = Dict[str, spack.spec.Spec]
+PlainEdges = Dict[str, Set[str]]
 
 
-def _get_spec_dependencies(specs, deps, spec_labels):
-    spec_deps_obj = _compute_spec_deps(specs)
-
-    if spec_deps_obj:
-        dependencies = spec_deps_obj["dependencies"]
-        specs = spec_deps_obj["specs"]
-
-        for entry in specs:
-            spec_labels[entry["label"]] = entry["spec"]
-
-        for entry in dependencies:
-            _add_dependency(entry["spec"], entry["depends"], deps)
-
-
-def stage_spec_jobs(specs):
-    """Take a set of release specs and generate a list of "stages", where the
-        jobs in any stage are dependent only on jobs in previous stages.  This
-        allows us to maximize build parallelism within the gitlab-ci framework.
+def stage_spec_jobs(specs: List[spack.spec.Spec]) -> Tuple[PlainNodes, PlainEdges, List[Set[str]]]:
+    """Turn a DAG into a list of stages (set of nodes), the list is ordered topologically, so that
+    each node in a stage has dependencies only in previous stages.
 
     Arguments:
-        specs (Iterable): Specs to build
-
-    Returns: A tuple of information objects describing the specs, dependencies
-        and stages:
-
-        spec_labels: A dictionary mapping the spec labels (which are formatted
-            as pkg-name/hash-prefix) to concrete specs.
-
-        deps: A dictionary where the keys should also have appeared as keys in
-            the spec_labels dictionary, and the values are the set of
-            dependencies for that spec.
-
-        stages: An ordered list of sets, each of which contains all the jobs to
-            built in that stage.  The jobs are expressed in the same format as
-            the keys in the spec_labels and deps objects.
+        specs: Specs to build
 
+    Returns: A tuple (nodes, edges, stages) where ``nodes`` maps labels to specs, ``edges`` maps
+        labels to a set of labels of dependencies, and ``stages`` is a topologically ordered list
+        of sets of labels.
     """
 
     # The convenience method below, "_remove_satisfied_deps()", does not modify
@@ -177,17 +148,12 @@ def _remove_satisfied_deps(deps, satisfied_list):
 
         return new_deps
 
-    deps = {}
-    spec_labels = {}
+    nodes, edges = _extract_dag(specs)
 
-    _get_spec_dependencies(specs, deps, spec_labels)
-
-    # Save the original deps, as we need to return them at the end of the
-    # function.  In the while loop below, the "dependencies" variable is
-    # overwritten rather than being modified each time through the loop,
-    # thus preserving the original value of "deps" saved here.
-    dependencies = deps
-    unstaged = set(spec_labels.keys())
+    # Save the original edges, as we need to return them at the end of the function. In the loop
+    # below, the "dependencies" variable is rebound rather than mutated, so "edges" is not mutated.
+    dependencies = edges
+    unstaged = set(nodes.keys())
     stages = []
 
     while dependencies:
@@ -203,7 +169,7 @@ def _remove_satisfied_deps(deps, satisfied_list):
     if unstaged:
         stages.append(unstaged.copy())
 
-    return spec_labels, deps, stages
+    return nodes, edges, stages
 
 
 def _print_staging_summary(spec_labels, stages, mirrors_to_check, rebuild_decisions):
@@ -235,87 +201,22 @@ def _print_staging_summary(spec_labels, stages, mirrors_to_check, rebuild_decisi
             tty.msg(msg)
 
 
-def _compute_spec_deps(spec_list):
-    """
-    Computes all the dependencies for the spec(s) and generates a JSON
-    object which provides both a list of unique spec names as well as a
-    comprehensive list of all the edges in the dependency graph.  For
-    example, given a single spec like 'readline@7.0', this function
-    generates the following JSON object:
+def _extract_dag(specs: List[spack.spec.Spec]) -> Tuple[PlainNodes, PlainEdges]:
+    """Extract a sub-DAG as plain old Python objects with external nodes removed."""
+    nodes: PlainNodes = {}
+    edges: PlainEdges = defaultdict(set)
 
-    .. code-block:: JSON
+    for edge in traverse.traverse_edges(specs, cover="edges"):
+        if (edge.parent and edge.parent.external) or edge.spec.external:
+            continue
+        child_id = _spec_ci_label(edge.spec)
+        nodes[child_id] = edge.spec
+        if edge.parent:
+            parent_id = _spec_ci_label(edge.parent)
+            nodes[parent_id] = edge.parent
+            edges[parent_id].add(child_id)
 
-       {
-           "dependencies": [
-               {
-                   "depends": "readline/ip6aiun",
-                   "spec": "readline/ip6aiun"
-               },
-               {
-                   "depends": "ncurses/y43rifz",
-                   "spec": "readline/ip6aiun"
-               },
-               {
-                   "depends": "ncurses/y43rifz",
-                   "spec": "readline/ip6aiun"
-               },
-               {
-                   "depends": "pkgconf/eg355zb",
-                   "spec": "ncurses/y43rifz"
-               },
-               {
-                   "depends": "pkgconf/eg355zb",
-                   "spec": "readline/ip6aiun"
-               }
-           ],
-           "specs": [
-               {
-                 "spec": "readline@7.0%apple-clang@9.1.0 arch=darwin-highs...",
-                 "label": "readline/ip6aiun"
-               },
-               {
-                 "spec": "ncurses@6.1%apple-clang@9.1.0 arch=darwin-highsi...",
-                 "label": "ncurses/y43rifz"
-               },
-               {
-                 "spec": "pkgconf@1.5.4%apple-clang@9.1.0 arch=darwin-high...",
-                 "label": "pkgconf/eg355zb"
-               }
-           ]
-       }
-
-    """
-    spec_labels = {}
-
-    specs = []
-    dependencies = []
-
-    def append_dep(s, d):
-        dependencies.append({"spec": s, "depends": d})
-
-    for spec in spec_list:
-        for s in spec.traverse(deptype="all"):
-            if s.external:
-                tty.msg(f"Will not stage external pkg: {s}")
-                continue
-
-            skey = _spec_deps_key(s)
-            spec_labels[skey] = s
-
-            for d in s.dependencies(deptype="all"):
-                dkey = _spec_deps_key(d)
-                if d.external:
-                    tty.msg(f"Will not stage external dep: {d}")
-                    continue
-
-                append_dep(skey, dkey)
-
-    for spec_label, concrete_spec in spec_labels.items():
-        specs.append({"label": spec_label, "spec": concrete_spec})
-
-    deps_json_obj = {"specs": specs, "dependencies": dependencies}
-
-    return deps_json_obj
+    return nodes, edges
 
 
 def _spec_matches(spec, match_string):
@@ -327,7 +228,7 @@ def _format_job_needs(
 ):
     needs_list = []
     for dep_job in dep_jobs:
-        dep_spec_key = _spec_deps_key(dep_job)
+        dep_spec_key = _spec_ci_label(dep_job)
         rebuild = rebuild_decisions[dep_spec_key].rebuild
 
         if not prune_dag or rebuild:
@@ -783,6 +684,22 @@ def generate_gitlab_ci_yaml(
             "instead.",
         )
 
+    def ensure_expected_target_path(path):
+        """Returns passed paths with all Windows path separators exchanged
+        for posix separators only if copy_only_pipeline is enabled
+
+        This is required as copy_only_pipelines are a unique scenario where
+        the generate job and child pipelines are run on different platforms.
+        To make this compatible w/ Windows, we cannot write Windows style path separators
+        that will be consumed on by the Posix copy job runner.
+
+        TODO (johnwparent): Refactor config + cli read/write to deal only in posix
+        style paths
+        """
+        if copy_only_pipeline and path:
+            path = path.replace("\\", "/")
+        return path
+
     pipeline_mirrors = spack.mirror.MirrorCollection(binary=True)
     deprecated_mirror_config = False
     buildcache_destination = None
@@ -906,7 +823,7 @@ def generate_gitlab_ci_yaml(
             if scope not in include_scopes and scope not in env_includes:
                 include_scopes.insert(0, scope)
         env_includes.extend(include_scopes)
-        env_yaml_root["spack"]["include"] = env_includes
+        env_yaml_root["spack"]["include"] = [ensure_expected_target_path(i) for i in env_includes]
 
         if "gitlab-ci" in env_yaml_root["spack"] and "ci" not in env_yaml_root["spack"]:
             env_yaml_root["spack"]["ci"] = env_yaml_root["spack"].pop("gitlab-ci")
@@ -1327,6 +1244,9 @@ def main_script_replacements(cmd):
             "SPACK_REBUILD_EVERYTHING": str(rebuild_everything),
             "SPACK_REQUIRE_SIGNING": os.environ.get("SPACK_REQUIRE_SIGNING", "False"),
         }
+        output_vars = output_object["variables"]
+        for item, val in output_vars.items():
+            output_vars[item] = ensure_expected_target_path(val)
 
         # TODO: Remove this block in Spack 0.23
         if deprecated_mirror_config and remote_mirror_override:
@@ -1383,7 +1303,6 @@ def main_script_replacements(cmd):
     sorted_output = {}
     for output_key, output_value in sorted(output_object.items()):
         sorted_output[output_key] = output_value
-
     if known_broken_specs_encountered:
         tty.error("This pipeline generated hashes known to be broken on develop:")
         display_broken_spec_messages(broken_specs_url, known_broken_specs_encountered)
@@ -1578,6 +1497,12 @@ def copy_test_logs_to_artifacts(test_stage, job_test_dir):
     copy_files_to_artifacts(os.path.join(test_stage, "*", "*.txt"), job_test_dir)
 
 
+def win_quote(quote_str: str) -> str:
+    if IS_WINDOWS:
+        quote_str = f'"{quote_str}"'
+    return quote_str
+
+
 def download_and_extract_artifacts(url, work_dir):
     """Look for gitlab artifacts.zip at the given url, and attempt to download
         and extract the contents into the given work_dir
@@ -1600,7 +1525,7 @@ def download_and_extract_artifacts(url, work_dir):
     request = Request(url, headers=headers)
     request.get_method = lambda: "GET"
 
-    response = opener.open(request)
+    response = opener.open(request, timeout=SPACK_CDASH_TIMEOUT)
     response_code = response.getcode()
 
     if response_code != 200:
@@ -1947,9 +1872,9 @@ def reproduce_ci_job(url, work_dir, autostart, gpg_url, runtime):
         entrypoint_script.append(["echo", f"Re-run install script using:\n\t{install_mechanism}"])
         # Allow interactive
         if IS_WINDOWS:
-            entrypoint_script.extend(["&", "($args -Join ' ')", "-NoExit"])
+            entrypoint_script.append(["&", "($args -Join ' ')", "-NoExit"])
         else:
-            entrypoint_script.extend(["exec", "$@"])
+            entrypoint_script.append(["exec", "$@"])
 
         process_command(
             "entrypoint", entrypoint_script, work_dir, run=False, exit_on_failure=False
@@ -2042,9 +1967,9 @@ def compose_command_err_handling(args):
         # but we need to handle EXEs (git, etc) ourselves
         catch_exe_failure = (
             """
-if ($LASTEXITCODE -ne 0){
-    throw "Command {} has failed"
-}
+if ($LASTEXITCODE -ne 0){{
+    throw 'Command {} has failed'
+}}
 """
             if IS_WINDOWS
             else ""
@@ -2276,13 +2201,13 @@ def __init__(self, ci_cdash):
     def args(self):
         return [
             "--cdash-upload-url",
-            self.upload_url,
+            win_quote(self.upload_url),
             "--cdash-build",
-            self.build_name,
+            win_quote(self.build_name),
             "--cdash-site",
-            self.site,
+            win_quote(self.site),
             "--cdash-buildstamp",
-            self.build_stamp,
+            win_quote(self.build_stamp),
         ]
 
     @property  # type: ignore
@@ -2348,7 +2273,7 @@ def create_buildgroup(self, opener, headers, url, group_name, group_type):
 
         request = Request(url, data=enc_data, headers=headers)
 
-        response = opener.open(request)
+        response = opener.open(request, timeout=SPACK_CDASH_TIMEOUT)
         response_code = response.getcode()
 
         if response_code not in [200, 201]:
@@ -2394,7 +2319,7 @@ def populate_buildgroup(self, job_names):
         request = Request(url, data=enc_data, headers=headers)
         request.get_method = lambda: "PUT"
 
-        response = opener.open(request)
+        response = opener.open(request, timeout=SPACK_CDASH_TIMEOUT)
         response_code = response.getcode()
 
         if response_code != 200:

lib/spack/spack/cmd/__init__.py

@@ -334,8 +334,7 @@ def display_specs(specs, args=None, **kwargs):
         variants (bool): Show variants with specs
         indent (int): indent each line this much
         groups (bool): display specs grouped by arch/compiler (default True)
-        decorators (dict): dictionary mappng specs to decorators
-        header_callback (typing.Callable): called at start of arch/compiler groups
+        decorator (typing.Callable): function to call to decorate specs
         all_headers (bool): show headers even when arch/compiler aren't defined
         output (typing.IO): A file object to write to. Default is ``sys.stdout``
 
@@ -384,15 +383,13 @@ def get_arg(name, default=None):
         vfmt = "{variants}" if variants else ""
         format_string = nfmt + "{@version}" + ffmt + vfmt
 
-    transform = {"package": decorator, "fullpackage": decorator}
-
     def fmt(s, depth=0):
         """Formatter function for all output specs"""
         string = ""
         if hashes:
             string += gray_hash(s, hlen) + " "
         string += depth * "    "
-        string += s.cformat(format_string, transform=transform)
+        string += decorator(s, s.cformat(format_string))
         return string
 
     def format_list(specs):
@@ -451,7 +448,7 @@ def filter_loaded_specs(specs):
     return [x for x in specs if x.dag_hash() in hashes]
 
 
-def print_how_many_pkgs(specs, pkg_type=""):
+def print_how_many_pkgs(specs, pkg_type="", suffix=""):
     """Given a list of specs, this will print a message about how many
     specs are in that list.
 
@@ -462,7 +459,7 @@ def print_how_many_pkgs(specs, pkg_type=""):
             category, e.g. if pkg_type is "installed" then the message
             would be "3 installed packages"
     """
-    tty.msg("%s" % llnl.string.plural(len(specs), pkg_type + " package"))
+    tty.msg("%s" % llnl.string.plural(len(specs), pkg_type + " package") + suffix)
 
 
 def spack_is_git_repo():

lib/spack/spack/cmd/audit.py

@@ -84,7 +84,7 @@ def externals(parser, args):
         return
 
     pkgs = args.name or spack.repo.PATH.all_package_names()
-    reports = spack.audit.run_group(args.subcommand, pkgs=pkgs)
+    reports = spack.audit.run_group(args.subcommand, pkgs=pkgs, debug_log=tty.debug)
     _process_reports(reports)
 
 

lib/spack/spack/cmd/buildcache.py

@@ -13,7 +13,6 @@
 import shutil
 import sys
 import tempfile
-import urllib.request
 from typing import Dict, List, Optional, Tuple, Union
 
 import llnl.util.tty as tty
@@ -54,6 +53,7 @@
 from spack.oci.oci import (
     copy_missing_layers_with_retry,
     get_manifest_and_config_with_retry,
+    list_tags,
     upload_blob_with_retry,
     upload_manifest_with_retry,
 )
@@ -133,6 +133,11 @@ def setup_parser(subparser: argparse.ArgumentParser):
         help="when pushing to an OCI registry, tag an image containing all root specs and their "
         "runtime dependencies",
     )
+    push.add_argument(
+        "--private",
+        action="store_true",
+        help="for a private mirror, include non-redistributable packages",
+    )
     arguments.add_common_arguments(push, ["specs", "jobs"])
     push.set_defaults(func=push_fn)
 
@@ -367,6 +372,25 @@ def _make_pool() -> MaybePool:
         return NoPool()
 
 
+def _skip_no_redistribute_for_public(specs):
+    remaining_specs = list()
+    removed_specs = list()
+    for spec in specs:
+        if spec.package.redistribute_binary:
+            remaining_specs.append(spec)
+        else:
+            removed_specs.append(spec)
+    if removed_specs:
+        colified_output = tty.colify.colified(list(s.name for s in removed_specs), indent=4)
+        tty.debug(
+            "The following specs will not be added to the binary cache"
+            " because they cannot be redistributed:\n"
+            f"{colified_output}\n"
+            "You can use `--private` to include them."
+        )
+    return remaining_specs
+
+
 def push_fn(args):
     """create a binary package and push it to a mirror"""
     if args.spec_file:
@@ -417,6 +441,8 @@ def push_fn(args):
         root="package" in args.things_to_install,
         dependencies="dependencies" in args.things_to_install,
     )
+    if not args.private:
+        specs = _skip_no_redistribute_for_public(specs)
 
     # When pushing multiple specs, print the url once ahead of time, as well as how
     # many specs are being pushed.
@@ -830,10 +856,7 @@ def _config_from_tag(image_ref: ImageReference, tag: str) -> Optional[dict]:
 
 
 def _update_index_oci(image_ref: ImageReference, tmpdir: str, pool: MaybePool) -> None:
-    request = urllib.request.Request(url=image_ref.tags_url())
-    response = spack.oci.opener.urlopen(request)
-    spack.oci.opener.ensure_status(request, response, 200)
-    tags = json.load(response)["tags"]
+    tags = list_tags(image_ref)
 
     # Fetch all image config files in parallel
     spec_dicts = pool.starmap(

lib/spack/spack/cmd/ci.py

@@ -31,7 +31,6 @@
 level = "long"
 
 SPACK_COMMAND = "spack"
-MAKE_COMMAND = "make"
 INSTALL_FAIL_CODE = 1
 FAILED_CREATE_BUILDCACHE_CODE = 100
 
@@ -40,6 +39,12 @@ def deindent(desc):
     return desc.replace("    ", "")
 
 
+def unicode_escape(path: str) -> str:
+    """Returns transformed path with any unicode
+    characters replaced with their corresponding escapes"""
+    return path.encode("unicode-escape").decode("utf-8")
+
+
 def setup_parser(subparser):
     setup_parser.parser = subparser
     subparsers = subparser.add_subparsers(help="CI sub-commands")
@@ -551,75 +556,35 @@ def ci_rebuild(args):
     # No hash match anywhere means we need to rebuild spec
 
     # Start with spack arguments
-    spack_cmd = [SPACK_COMMAND, "--color=always", "--backtrace", "--verbose"]
+    spack_cmd = [SPACK_COMMAND, "--color=always", "--backtrace", "--verbose", "install"]
 
     config = cfg.get("config")
     if not config["verify_ssl"]:
         spack_cmd.append("-k")
 
-    install_args = []
+    install_args = [f'--use-buildcache={spack_ci.win_quote("package:never,dependencies:only")}']
 
     can_verify = spack_ci.can_verify_binaries()
     verify_binaries = can_verify and spack_is_pr_pipeline is False
     if not verify_binaries:
         install_args.append("--no-check-signature")
 
-    slash_hash = "/{}".format(job_spec.dag_hash())
-
-    # Arguments when installing dependencies from cache
-    deps_install_args = install_args
+    slash_hash = spack_ci.win_quote("/" + job_spec.dag_hash())
 
     # Arguments when installing the root from sources
-    root_install_args = install_args + [
-        "--keep-stage",
-        "--only=package",
-        "--use-buildcache=package:never,dependencies:only",
-    ]
+    deps_install_args = install_args + ["--only=dependencies"]
+    root_install_args = install_args + ["--keep-stage", "--only=package"]
+
     if cdash_handler:
         # Add additional arguments to `spack install` for CDash reporting.
         root_install_args.extend(cdash_handler.args())
-    root_install_args.append(slash_hash)
-
-    # ["x", "y"] -> "'x' 'y'"
-    args_to_string = lambda args: " ".join("'{}'".format(arg) for arg in args)
 
     commands = [
         # apparently there's a race when spack bootstraps? do it up front once
-        [SPACK_COMMAND, "-e", env.path, "bootstrap", "now"],
-        [
-            SPACK_COMMAND,
-            "-e",
-            env.path,
-            "env",
-            "depfile",
-            "-o",
-            "Makefile",
-            "--use-buildcache=package:never,dependencies:only",
-            slash_hash,  # limit to spec we're building
-        ],
-        [
-            # --output-sync requires GNU make 4.x.
-            # Old make errors when you pass it a flag it doesn't recognize,
-            # but it doesn't error or warn when you set unrecognized flags in
-            # this variable.
-            "export",
-            "GNUMAKEFLAGS=--output-sync=recurse",
-        ],
-        [
-            MAKE_COMMAND,
-            "SPACK={}".format(args_to_string(spack_cmd)),
-            "SPACK_COLOR=always",
-            "SPACK_INSTALL_FLAGS={}".format(args_to_string(deps_install_args)),
-            "-j$(nproc)",
-            "install-deps/{}".format(
-                spack.environment.depfile.MakefileSpec(job_spec).safe_format(
-                    "{name}-{version}-{hash}"
-                )
-            ),
-        ],
-        spack_cmd + ["install"] + root_install_args,
+        [SPACK_COMMAND, "-e", unicode_escape(env.path), "bootstrap", "now"],
+        spack_cmd + deps_install_args + [slash_hash],
+        spack_cmd + root_install_args + [slash_hash],
     ]
-
     tty.debug("Installing {0} from source".format(job_spec.name))
     install_exit_code = spack_ci.process_command("install", commands, repro_dir)
 

lib/spack/spack/cmd/common/arguments.py

@@ -563,12 +563,13 @@ def add_concretizer_args(subparser):
         help="reuse installed packages/buildcaches when possible",
     )
     subgroup.add_argument(
+        "--fresh-roots",
         "--reuse-deps",
         action=ConfigSetAction,
         dest="concretizer:reuse",
         const="dependencies",
         default=None,
-        help="reuse installed dependencies only",
+        help="concretize with fresh roots and reused dependencies",
     )
     subgroup.add_argument(
         "--deprecated",

lib/spack/spack/cmd/env.py

@@ -10,13 +10,13 @@
 import sys
 import tempfile
 from pathlib import Path
-from typing import Optional
+from typing import List, Optional
 
 import llnl.string as string
 import llnl.util.filesystem as fs
 import llnl.util.tty as tty
 from llnl.util.tty.colify import colify
-from llnl.util.tty.color import colorize
+from llnl.util.tty.color import cescape, colorize
 
 import spack.cmd
 import spack.cmd.common
@@ -61,14 +61,7 @@
 #
 def env_create_setup_parser(subparser):
     """create a new environment"""
-    subparser.add_argument(
-        "env_name",
-        metavar="env",
-        help=(
-            "name of managed environment or directory of the anonymous env "
-            "(when using --dir/-d) to activate"
-        ),
-    )
+    subparser.add_argument("env_name", metavar="env", help="name or directory of environment")
     subparser.add_argument(
         "-d", "--dir", action="store_true", help="create an environment in a specific directory"
     )
@@ -94,6 +87,9 @@ def env_create_setup_parser(subparser):
         default=None,
         help="either a lockfile (must end with '.json' or '.lock') or a manifest file",
     )
+    subparser.add_argument(
+        "--include-concrete", action="append", help="name of old environment to copy specs from"
+    )
 
 
 def env_create(args):
@@ -111,19 +107,32 @@ def env_create(args):
         # the environment should not include a view.
         with_view = None
 
+    include_concrete = None
+    if hasattr(args, "include_concrete"):
+        include_concrete = args.include_concrete
+
     env = _env_create(
         args.env_name,
         init_file=args.envfile,
-        dir=args.dir,
+        dir=args.dir or os.path.sep in args.env_name or args.env_name in (".", ".."),
         with_view=with_view,
         keep_relative=args.keep_relative,
+        include_concrete=include_concrete,
     )
 
     # Generate views, only really useful for environments created from spack.lock files.
     env.regenerate_views()
 
 
-def _env_create(name_or_path, *, init_file=None, dir=False, with_view=None, keep_relative=False):
+def _env_create(
+    name_or_path: str,
+    *,
+    init_file: Optional[str] = None,
+    dir: bool = False,
+    with_view: Optional[str] = None,
+    keep_relative: bool = False,
+    include_concrete: Optional[List[str]] = None,
+):
     """Create a new environment, with an optional yaml description.
 
     Arguments:
@@ -135,22 +144,31 @@ def _env_create(name_or_path, *, init_file=None, dir=False, with_view=None, keep
         keep_relative (bool): if True, develop paths are copied verbatim into
             the new environment file, otherwise they may be made absolute if the
             new environment is in a different location
+        include_concrete (list): list of the included concrete environments
     """
     if not dir:
         env = ev.create(
-            name_or_path, init_file=init_file, with_view=with_view, keep_relative=keep_relative
+            name_or_path,
+            init_file=init_file,
+            with_view=with_view,
+            keep_relative=keep_relative,
+            include_concrete=include_concrete,
         )
-        tty.msg("Created environment '%s' in %s" % (name_or_path, env.path))
-        tty.msg("You can activate this environment with:")
-        tty.msg("  spack env activate %s" % (name_or_path))
-        return env
-
-    env = ev.create_in_dir(
-        name_or_path, init_file=init_file, with_view=with_view, keep_relative=keep_relative
-    )
-    tty.msg("Created environment in %s" % env.path)
-    tty.msg("You can activate this environment with:")
-    tty.msg("  spack env activate %s" % env.path)
+        tty.msg(
+            colorize(
+                f"Created environment @c{{{cescape(name_or_path)}}} in: @c{{{cescape(env.path)}}}"
+            )
+        )
+    else:
+        env = ev.create_in_dir(
+            name_or_path,
+            init_file=init_file,
+            with_view=with_view,
+            keep_relative=keep_relative,
+            include_concrete=include_concrete,
+        )
+        tty.msg(colorize(f"Created independent environment in: @c{{{cescape(env.path)}}}"))
+    tty.msg(f"Activate with: {colorize(f'@c{{spack env activate {cescape(name_or_path)}}}')}")
     return env
 
 
@@ -436,6 +454,12 @@ def env_remove_setup_parser(subparser):
     """remove an existing environment"""
     subparser.add_argument("rm_env", metavar="env", nargs="+", help="environment(s) to remove")
     arguments.add_common_arguments(subparser, ["yes_to_all"])
+    subparser.add_argument(
+        "-f",
+        "--force",
+        action="store_true",
+        help="remove the environment even if it is included in another environment",
+    )
 
 
 def env_remove(args):
@@ -445,13 +469,35 @@ def env_remove(args):
     and manifests embedded in repositories should be removed manually.
     """
     read_envs = []
+    valid_envs = []
     bad_envs = []
-    for env_name in args.rm_env:
+    invalid_envs = []
+
+    for env_name in ev.all_environment_names():
         try:
             env = ev.read(env_name)
-            read_envs.append(env)
+            valid_envs.append(env_name)
+
+            if env_name in args.rm_env:
+                read_envs.append(env)
         except (spack.config.ConfigFormatError, ev.SpackEnvironmentConfigError):
-            bad_envs.append(env_name)
+            invalid_envs.append(env_name)
+
+            if env_name in args.rm_env:
+                bad_envs.append(env_name)
+
+        # Check if env is linked to another before trying to remove
+        for name in valid_envs:
+            # don't check if environment is included to itself
+            if name == env_name:
+                continue
+            environ = ev.Environment(ev.root(name))
+            if ev.root(env_name) in environ.included_concrete_envs:
+                msg = f'Environment "{env_name}" is being used by environment "{name}"'
+                if args.force:
+                    tty.warn(msg)
+                else:
+                    tty.die(msg)
 
     if not args.yes_to_all:
         environments = string.plural(len(args.rm_env), "environment", show_n=False)

lib/spack/spack/cmd/find.py

@@ -14,6 +14,7 @@
 import spack.cmd as cmd
 import spack.environment as ev
 import spack.repo
+import spack.store
 from spack.cmd.common import arguments
 from spack.database import InstallStatuses
 
@@ -69,6 +70,12 @@ def setup_parser(subparser):
 
     arguments.add_common_arguments(subparser, ["long", "very_long", "tags", "namespaces"])
 
+    subparser.add_argument(
+        "-r",
+        "--only-roots",
+        action="store_true",
+        help="don't show full list of installed specs in an environment",
+    )
     subparser.add_argument(
         "-c",
         "--show-concretized",
@@ -189,26 +196,22 @@ def query_arguments(args):
     return q_args
 
 
-def setup_env(env):
+def make_env_decorator(env):
     """Create a function for decorating specs when in an environment."""
 
-    def strip_build(seq):
-        return set(s.copy(deps=("link", "run")) for s in seq)
-
-    added = set(strip_build(env.added_specs()))
-    roots = set(strip_build(env.roots()))
-    removed = set(strip_build(env.removed_specs()))
+    roots = set(env.roots())
+    removed = set(env.removed_specs())
 
     def decorator(spec, fmt):
         # add +/-/* to show added/removed/root specs
         if any(spec.dag_hash() == r.dag_hash() for r in roots):
-            return color.colorize("@*{%s}" % fmt)
+            return color.colorize(f"@*{{{fmt}}}")
         elif spec in removed:
-            return color.colorize("@K{%s}" % fmt)
+            return color.colorize(f"@K{{{fmt}}}")
         else:
-            return "%s" % fmt
+            return fmt
 
-    return decorator, added, roots, removed
+    return decorator
 
 
 def display_env(env, args, decorator, results):
@@ -223,10 +226,54 @@ def display_env(env, args, decorator, results):
     """
     tty.msg("In environment %s" % env.name)
 
-    if not env.user_specs:
-        tty.msg("No root specs")
-    else:
-        tty.msg("Root specs")
+    num_roots = len(env.user_specs) or "No"
+    tty.msg(f"{num_roots} root specs")
+
+    concrete_specs = {
+        root: concrete_root
+        for root, concrete_root in zip(env.concretized_user_specs, env.concrete_roots())
+    }
+
+    def root_decorator(spec, string):
+        """Decorate root specs with their install status if needed"""
+        concrete = concrete_specs.get(spec)
+        if concrete:
+            status = color.colorize(concrete.install_status().value)
+            hash = concrete.dag_hash()
+        else:
+            status = color.colorize(spack.spec.InstallStatus.absent.value)
+            hash = "-" * 32
+
+        # TODO: status has two extra spaces on the end of it, but fixing this and other spec
+        # TODO: space format idiosyncrasies is complicated. Fix this eventually
+        status = status[:-2]
+
+        if args.long or args.very_long:
+            hash = color.colorize(f"@K{{{hash[: 7 if args.long else None]}}}")
+            return f"{status} {hash} {string}"
+        else:
+            return f"{status} {string}"
+
+    with spack.store.STORE.db.read_transaction():
+        cmd.display_specs(
+            env.user_specs,
+            args,
+            # these are overrides of CLI args
+            paths=False,
+            long=False,
+            very_long=False,
+            # these enforce details in the root specs to show what the user asked for
+            namespaces=True,
+            show_flags=True,
+            show_full_compiler=True,
+            decorator=root_decorator,
+            variants=True,
+        )
+
+    print()
+
+    if env.included_concrete_envs:
+        tty.msg("Included specs")
 
         # Root specs cannot be displayed with prefixes, since those are not
         # set for abstract specs. Same for hashes
@@ -236,10 +283,10 @@ def display_env(env, args, decorator, results):
         # Roots are displayed with variants, etc. so that we can see
         # specifically what the user asked for.
         cmd.display_specs(
-            env.user_specs,
+            env.included_user_specs,
             root_args,
             decorator=lambda s, f: color.colorize("@*{%s}" % f),
-            namespaces=True,
+            namespace=True,
             show_flags=True,
             show_full_compiler=True,
             variants=True,
@@ -254,7 +301,7 @@ def display_env(env, args, decorator, results):
     # Display a header for the installed packages section IF there are installed
     # packages. If there aren't any, we'll just end up printing "0 installed packages"
     # later.
-    if results:
+    if results and not args.only_roots:
         tty.msg("Installed packages")
 
 
@@ -263,9 +310,10 @@ def find(parser, args):
     results = args.specs(**q_args)
 
     env = ev.active_environment()
-    decorator = lambda s, f: f
-    if env:
-        decorator, _, roots, _ = setup_env(env)
+    if not env and args.only_roots:
+        tty.die("-r / --only-roots requires an active environment")
+
+    decorator = make_env_decorator(env) if env else lambda s, f: f
 
     # use groups by default except with format.
     if args.groups is None:
@@ -292,9 +340,12 @@ def find(parser, args):
             if env:
                 display_env(env, args, decorator, results)
 
-        cmd.display_specs(results, args, decorator=decorator, all_headers=True)
+        count_suffix = " (not shown)"
+        if not args.only_roots:
+            cmd.display_specs(results, args, decorator=decorator, all_headers=True)
+            count_suffix = ""
 
         # print number of installed packages last (as the list may be long)
         if sys.stdout.isatty() and args.groups:
             pkg_type = "loaded" if args.loaded else "installed"
-            spack.cmd.print_how_many_pkgs(results, pkg_type)
+            spack.cmd.print_how_many_pkgs(results, pkg_type, suffix=count_suffix)

lib/spack/spack/cmd/info.py

@@ -263,8 +263,8 @@ def _fmt_name_and_default(variant):
     return color.colorize(f"@c{{{variant.name}}} @C{{[{_fmt_value(variant.default)}]}}")
 
 
-def _fmt_when(when, indent):
-    return color.colorize(f"{indent * ' '}@B{{when}} {color.cescape(when)}")
+def _fmt_when(when: "spack.spec.Spec", indent: int):
+    return color.colorize(f"{indent * ' '}@B{{when}} {color.cescape(str(when))}")
 
 
 def _fmt_variant_description(variant, width, indent):
@@ -441,7 +441,7 @@ def get_url(version):
                 return "No URL"
 
         url = get_url(preferred) if pkg.has_code else ""
-        line = version("    {0}".format(pad(preferred))) + color.cescape(url)
+        line = version("    {0}".format(pad(preferred))) + color.cescape(str(url))
         color.cwrite(line)
 
         print()
@@ -464,7 +464,7 @@ def get_url(version):
                 continue
 
             for v, url in vers:
-                line = version("    {0}".format(pad(v))) + color.cescape(url)
+                line = version("    {0}".format(pad(v))) + color.cescape(str(url))
                 color.cprint(line)
 
 
@@ -475,10 +475,7 @@ def print_virtuals(pkg, args):
     color.cprint(section_title("Virtual Packages: "))
     if pkg.provided:
         for when, specs in reversed(sorted(pkg.provided.items())):
-            line = "    %s provides %s" % (
-                when.colorized(),
-                ", ".join(s.colorized() for s in specs),
-            )
+            line = "    %s provides %s" % (when.cformat(), ", ".join(s.cformat() for s in specs))
             print(line)
 
     else:
@@ -497,7 +494,9 @@ def print_licenses(pkg, args):
         pad = padder(pkg.licenses, 4)
         for when_spec in pkg.licenses:
             license_identifier = pkg.licenses[when_spec]
-            line = license("    {0}".format(pad(license_identifier))) + color.cescape(when_spec)
+            line = license("    {0}".format(pad(license_identifier))) + color.cescape(
+                str(when_spec)
+            )
             color.cprint(line)
 
 

lib/spack/spack/cmd/install.py

@@ -420,10 +420,9 @@ def install_with_active_env(env: ev.Environment, args, install_kwargs, reporter_
         with reporter_factory(specs_to_install):
             env.install_specs(specs_to_install, **install_kwargs)
     finally:
-        # TODO: this is doing way too much to trigger
-        # views and modules to be generated.
-        with env.write_transaction():
-            env.write(regenerate=True)
+        if env.views:
+            with env.write_transaction():
+                env.write(regenerate=True)
 
 
 def concrete_specs_from_cli(args, install_kwargs):

lib/spack/spack/cmd/mirror.py

@@ -71,6 +71,11 @@ def setup_parser(subparser):
         help="the number of versions to fetch for each spec, choose 'all' to"
         " retrieve all versions of each package",
     )
+    create_parser.add_argument(
+        "--private",
+        action="store_true",
+        help="for a private mirror, include non-redistributable packages",
+    )
     arguments.add_common_arguments(create_parser, ["specs"])
     arguments.add_concretizer_args(create_parser)
 
@@ -108,6 +113,11 @@ def setup_parser(subparser):
             "and source use `--type binary --type source` (default)"
         ),
     )
+    add_parser.add_argument(
+        "--autopush",
+        action="store_true",
+        help=("set mirror to push automatically after installation"),
+    )
     add_parser_signed = add_parser.add_mutually_exclusive_group(required=False)
     add_parser_signed.add_argument(
         "--unsigned",
@@ -175,6 +185,21 @@ def setup_parser(subparser):
         ),
     )
     set_parser.add_argument("--url", help="url of mirror directory from 'spack mirror create'")
+    set_parser_autopush = set_parser.add_mutually_exclusive_group(required=False)
+    set_parser_autopush.add_argument(
+        "--autopush",
+        help="set mirror to push automatically after installation",
+        action="store_true",
+        default=None,
+        dest="autopush",
+    )
+    set_parser_autopush.add_argument(
+        "--no-autopush",
+        help="set mirror to not push automatically after installation",
+        action="store_false",
+        default=None,
+        dest="autopush",
+    )
     set_parser_unsigned = set_parser.add_mutually_exclusive_group(required=False)
     set_parser_unsigned.add_argument(
         "--unsigned",
@@ -218,6 +243,7 @@ def mirror_add(args):
         or args.type
         or args.oci_username
         or args.oci_password
+        or args.autopush
         or args.signed is not None
     ):
         connection = {"url": args.url}
@@ -234,6 +260,8 @@ def mirror_add(args):
         if args.type:
             connection["binary"] = "binary" in args.type
             connection["source"] = "source" in args.type
+        if args.autopush:
+            connection["autopush"] = args.autopush
         if args.signed is not None:
             connection["signed"] = args.signed
         mirror = spack.mirror.Mirror(connection, name=args.name)
@@ -270,6 +298,8 @@ def _configure_mirror(args):
         changes["access_pair"] = [args.oci_username, args.oci_password]
     if getattr(args, "signed", None) is not None:
         changes["signed"] = args.signed
+    if getattr(args, "autopush", None) is not None:
+        changes["autopush"] = args.autopush
 
     # argparse cannot distinguish between --binary and --no-binary when same dest :(
     # notice that set-url does not have these args, so getattr
@@ -334,7 +364,6 @@ def concrete_specs_from_user(args):
     specs = filter_externals(specs)
     specs = list(set(specs))
     specs.sort(key=lambda s: (s.name, s.version))
-    specs, _ = lang.stable_partition(specs, predicate_fn=not_excluded_fn(args))
     return specs
 
 
@@ -379,36 +408,50 @@ def concrete_specs_from_cli_or_file(args):
     return specs
 
 
-def not_excluded_fn(args):
-    """Return a predicate that evaluate to True if a spec was not explicitly
-    excluded by the user.
-    """
-    exclude_specs = []
-    if args.exclude_file:
-        exclude_specs.extend(specs_from_text_file(args.exclude_file, concretize=False))
-    if args.exclude_specs:
-        exclude_specs.extend(spack.cmd.parse_specs(str(args.exclude_specs).split()))
+class IncludeFilter:
+    def __init__(self, args):
+        self.exclude_specs = []
+        if args.exclude_file:
+            self.exclude_specs.extend(specs_from_text_file(args.exclude_file, concretize=False))
+        if args.exclude_specs:
+            self.exclude_specs.extend(spack.cmd.parse_specs(str(args.exclude_specs).split()))
+        self.private = args.private
 
-    def not_excluded(x):
-        return not any(x.satisfies(y) for y in exclude_specs)
+    def __call__(self, x):
+        return all([self._not_license_excluded(x), self._not_cmdline_excluded(x)])
 
-    return not_excluded
+    def _not_license_excluded(self, x):
+        """True if the spec is for a private mirror, or as long as the
+        package does not explicitly forbid redistributing source."""
+        if self.private:
+            return True
+        elif x.package_class.redistribute_source(x):
+            return True
+        else:
+            tty.debug(
+                "Skip adding {0} to mirror: the package.py file"
+                " indicates that a public mirror should not contain"
+                " it.".format(x.name)
+            )
+            return False
+
+    def _not_cmdline_excluded(self, x):
+        """True if a spec was not explicitly excluded by the user."""
+        return not any(x.satisfies(y) for y in self.exclude_specs)
 
 
-def concrete_specs_from_environment(selection_fn):
+def concrete_specs_from_environment():
     env = ev.active_environment()
     assert env, "an active environment is required"
     mirror_specs = env.all_specs()
     mirror_specs = filter_externals(mirror_specs)
-    mirror_specs, _ = lang.stable_partition(mirror_specs, predicate_fn=selection_fn)
     return mirror_specs
 
 
-def all_specs_with_all_versions(selection_fn):
+def all_specs_with_all_versions():
     specs = [spack.spec.Spec(n) for n in spack.repo.all_package_names()]
     mirror_specs = spack.mirror.get_all_versions(specs)
     mirror_specs.sort(key=lambda s: (s.name, s.version))
-    mirror_specs, _ = lang.stable_partition(mirror_specs, predicate_fn=selection_fn)
     return mirror_specs
 
 
@@ -429,12 +472,6 @@ def versions_per_spec(args):
     return num_versions
 
 
-def create_mirror_for_individual_specs(mirror_specs, path, skip_unstable_versions):
-    present, mirrored, error = spack.mirror.create(path, mirror_specs, skip_unstable_versions)
-    tty.msg("Summary for mirror in {}".format(path))
-    process_mirror_stats(present, mirrored, error)
-
-
 def process_mirror_stats(present, mirrored, error):
     p, m, e = len(present), len(mirrored), len(error)
     tty.msg(
@@ -480,30 +517,28 @@ def mirror_create(args):
     # When no directory is provided, the source dir is used
     path = args.directory or spack.caches.fetch_cache_location()
 
+    mirror_specs, mirror_fn = _specs_and_action(args)
+    mirror_fn(mirror_specs, path=path, skip_unstable_versions=args.skip_unstable_versions)
+
+
+def _specs_and_action(args):
+    include_fn = IncludeFilter(args)
+
     if args.all and not ev.active_environment():
-        create_mirror_for_all_specs(
-            path=path,
-            skip_unstable_versions=args.skip_unstable_versions,
-            selection_fn=not_excluded_fn(args),
-        )
-        return
+        mirror_specs = all_specs_with_all_versions()
+        mirror_fn = create_mirror_for_all_specs
+    elif args.all and ev.active_environment():
+        mirror_specs = concrete_specs_from_environment()
+        mirror_fn = create_mirror_for_individual_specs
+    else:
+        mirror_specs = concrete_specs_from_user(args)
+        mirror_fn = create_mirror_for_individual_specs
 
-    if args.all and ev.active_environment():
-        create_mirror_for_all_specs_inside_environment(
-            path=path,
-            skip_unstable_versions=args.skip_unstable_versions,
-            selection_fn=not_excluded_fn(args),
-        )
-        return
-
-    mirror_specs = concrete_specs_from_user(args)
-    create_mirror_for_individual_specs(
-        mirror_specs, path=path, skip_unstable_versions=args.skip_unstable_versions
-    )
+    mirror_specs, _ = lang.stable_partition(mirror_specs, predicate_fn=include_fn)
+    return mirror_specs, mirror_fn
 
 
-def create_mirror_for_all_specs(path, skip_unstable_versions, selection_fn):
-    mirror_specs = all_specs_with_all_versions(selection_fn=selection_fn)
+def create_mirror_for_all_specs(mirror_specs, path, skip_unstable_versions):
     mirror_cache, mirror_stats = spack.mirror.mirror_cache_and_stats(
         path, skip_unstable_versions=skip_unstable_versions
     )
@@ -515,11 +550,10 @@ def create_mirror_for_all_specs(path, skip_unstable_versions, selection_fn):
     process_mirror_stats(*mirror_stats.stats())
 
 
-def create_mirror_for_all_specs_inside_environment(path, skip_unstable_versions, selection_fn):
-    mirror_specs = concrete_specs_from_environment(selection_fn=selection_fn)
-    create_mirror_for_individual_specs(
-        mirror_specs, path=path, skip_unstable_versions=skip_unstable_versions
-    )
+def create_mirror_for_individual_specs(mirror_specs, path, skip_unstable_versions):
+    present, mirrored, error = spack.mirror.create(path, mirror_specs, skip_unstable_versions)
+    tty.msg("Summary for mirror in {}".format(path))
+    process_mirror_stats(present, mirrored, error)
 
 
 def mirror_destroy(args):

lib/spack/spack/cmd/tutorial.py

@@ -23,7 +23,7 @@
 
 
 # tutorial configuration parameters
-tutorial_branch = "releases/v0.21"
+tutorial_branch = "releases/v0.22"
 tutorial_mirror = "file:///mirror"
 tutorial_key = os.path.join(spack.paths.share_path, "keys", "tutorial.pub")
 

lib/spack/spack/cmd/uninstall.py

@@ -239,6 +239,8 @@ def get_uninstall_list(args, specs: List[spack.spec.Spec], env: Optional[ev.Envi
             print()
             tty.info("The following environments still reference these specs:")
             colify([e.name for e in other_dependent_envs.keys()], indent=4)
+            if env:
+                msgs.append("use `spack remove` to remove the spec from the current environment")
             msgs.append("use `spack env remove` to remove environments")
         msgs.append("use `spack uninstall --force` to override")
         print()

lib/spack/spack/cmd/unit_test.py

@@ -214,8 +214,6 @@ def unit_test(parser, args, unknown_args):
 
     # Ensure clingo is available before switching to the
     # mock configuration used by unit tests
-    # Note: skip on windows here because for the moment,
-    # clingo is wholly unsupported from bootstrap
     with spack.bootstrap.ensure_bootstrap_configuration():
         spack.bootstrap.ensure_core_dependencies()
         if pytest is None:

lib/spack/spack/compiler.py

@@ -20,8 +20,10 @@
 
 import spack.compilers
 import spack.error
+import spack.schema.environment
 import spack.spec
 import spack.util.executable
+import spack.util.libc
 import spack.util.module_cmd
 import spack.version
 from spack.util.environment import filter_system_paths
@@ -107,7 +109,6 @@ def _parse_link_paths(string):
     """
     lib_search_paths = False
     raw_link_dirs = []
-    tty.debug("parsing implicit link info")
     for line in string.splitlines():
         if lib_search_paths:
             if line.startswith("\t"):
@@ -122,7 +123,7 @@ def _parse_link_paths(string):
             continue
         if _LINKER_LINE_IGNORE.match(line):
             continue
-        tty.debug("linker line: %s" % line)
+        tty.debug(f"implicit link dirs: link line: {line}")
 
         next_arg = False
         for arg in line.split():
@@ -138,15 +139,12 @@ def _parse_link_paths(string):
             link_dir_arg = _LINK_DIR_ARG.match(arg)
             if link_dir_arg:
                 link_dir = link_dir_arg.group("dir")
-                tty.debug("linkdir: %s" % link_dir)
                 raw_link_dirs.append(link_dir)
 
             link_dir_arg = _LIBPATH_ARG.match(arg)
             if link_dir_arg:
                 link_dir = link_dir_arg.group("dir")
-                tty.debug("libpath: %s", link_dir)
                 raw_link_dirs.append(link_dir)
-    tty.debug("found raw link dirs: %s" % ", ".join(raw_link_dirs))
 
     implicit_link_dirs = list()
     visited = set()
@@ -156,7 +154,7 @@ def _parse_link_paths(string):
             implicit_link_dirs.append(normalized_path)
             visited.add(normalized_path)
 
-    tty.debug("found link dirs: %s" % ", ".join(implicit_link_dirs))
+    tty.debug(f"implicit link dirs: result: {', '.join(implicit_link_dirs)}")
     return implicit_link_dirs
 
 
@@ -417,17 +415,35 @@ def real_version(self):
                 self._real_version = self.version
         return self._real_version
 
-    def implicit_rpaths(self):
+    def implicit_rpaths(self) -> List[str]:
         if self.enable_implicit_rpaths is False:
             return []
 
-        # Put CXX first since it has the most linking issues
-        # And because it has flags that affect linking
-        link_dirs = self._get_compiler_link_paths()
+        output = self.compiler_verbose_output
+
+        if not output:
+            return []
+
+        link_dirs = _parse_non_system_link_dirs(output)
 
         all_required_libs = list(self.required_libs) + Compiler._all_compiler_rpath_libraries
         return list(paths_containing_libs(link_dirs, all_required_libs))
 
+    @property
+    def default_libc(self) -> Optional["spack.spec.Spec"]:
+        """Determine libc targeted by the compiler from link line"""
+        output = self.compiler_verbose_output
+
+        if not output:
+            return None
+
+        dynamic_linker = spack.util.libc.parse_dynamic_linker(output)
+
+        if not dynamic_linker:
+            return None
+
+        return spack.util.libc.libc_from_dynamic_linker(dynamic_linker)
+
     @property
     def required_libs(self):
         """For executables created with this compiler, the compiler libraries
@@ -436,17 +452,17 @@ def required_libs(self):
         # By default every compiler returns the empty list
         return []
 
-    def _get_compiler_link_paths(self):
+    @property
+    def compiler_verbose_output(self) -> Optional[str]:
+        """Verbose output from compiling a dummy C source file. Output is cached."""
+        if not hasattr(self, "_compile_c_source_output"):
+            self._compile_c_source_output = self._compile_dummy_c_source()
+        return self._compile_c_source_output
+
+    def _compile_dummy_c_source(self) -> Optional[str]:
         cc = self.cc if self.cc else self.cxx
         if not cc or not self.verbose_flag:
-            # Cannot determine implicit link paths without a compiler / verbose flag
-            return []
-
-        # What flag types apply to first_compiler, in what order
-        if cc == self.cc:
-            flags = ["cflags", "cppflags", "ldflags"]
-        else:
-            flags = ["cxxflags", "cppflags", "ldflags"]
+            return None
 
         try:
             tmpdir = tempfile.mkdtemp(prefix="spack-implicit-link-info")
@@ -458,20 +474,19 @@ def _get_compiler_link_paths(self):
                     "int main(int argc, char* argv[]) { (void)argc; (void)argv; return 0; }\n"
                 )
             cc_exe = spack.util.executable.Executable(cc)
-            for flag_type in flags:
+            for flag_type in ["cflags" if cc == self.cc else "cxxflags", "cppflags", "ldflags"]:
                 cc_exe.add_default_arg(*self.flags.get(flag_type, []))
 
             with self.compiler_environment():
-                output = cc_exe(self.verbose_flag, fin, "-o", fout, output=str, error=str)
-            return _parse_non_system_link_dirs(output)
+                return cc_exe(self.verbose_flag, fin, "-o", fout, output=str, error=str)
         except spack.util.executable.ProcessError as pe:
             tty.debug("ProcessError: Command exited with non-zero status: " + pe.long_message)
-            return []
+            return None
         finally:
             shutil.rmtree(tmpdir, ignore_errors=True)
 
     @property
-    def verbose_flag(self):
+    def verbose_flag(self) -> Optional[str]:
         """
         This property should be overridden in the compiler subclass if a
         verbose flag is available.
@@ -669,8 +684,8 @@ def __str__(self):
 
     @contextlib.contextmanager
     def compiler_environment(self):
-        # yield immediately if no modules
-        if not self.modules:
+        # Avoid modifying os.environ if possible.
+        if not self.modules and not self.environment:
             yield
             return
 
@@ -687,13 +702,9 @@ def compiler_environment(self):
                 spack.util.module_cmd.load_module(module)
 
             # apply other compiler environment changes
-            env = spack.util.environment.EnvironmentModifications()
-            env.extend(spack.schema.environment.parse(self.environment))
-            env.apply_modifications()
+            spack.schema.environment.parse(self.environment).apply_modifications()
 
             yield
-        except BaseException:
-            raise
         finally:
             # Restore environment regardless of whether inner code succeeded
             os.environ.clear()

lib/spack/spack/compilers/__init__.py

@@ -10,6 +10,7 @@
 import itertools
 import multiprocessing.pool
 import os
+import warnings
 from typing import Dict, List, Optional, Tuple
 
 import archspec.cpu
@@ -109,27 +110,33 @@ def _to_dict(compiler):
     return {"compiler": d}
 
 
-def get_compiler_config(scope=None, init_config=False):
+def get_compiler_config(
+    configuration: "spack.config.Configuration",
+    *,
+    scope: Optional[str] = None,
+    init_config: bool = False,
+) -> List[Dict]:
     """Return the compiler configuration for the specified architecture."""
-
-    config = spack.config.CONFIG.get("compilers", scope=scope) or []
+    config = configuration.get("compilers", scope=scope) or []
     if config or not init_config:
         return config
 
-    merged_config = spack.config.CONFIG.get("compilers")
+    merged_config = configuration.get("compilers")
     if merged_config:
         # Config is empty for this scope
         # Do not init config because there is a non-empty scope
         return config
 
-    _init_compiler_config(scope=scope)
-    config = spack.config.CONFIG.get("compilers", scope=scope)
+    _init_compiler_config(configuration, scope=scope)
+    config = configuration.get("compilers", scope=scope)
     return config
 
 
-def get_compiler_config_from_packages(scope=None):
+def get_compiler_config_from_packages(
+    configuration: "spack.config.Configuration", *, scope: Optional[str] = None
+) -> List[Dict]:
     """Return the compiler configuration from packages.yaml"""
-    config = spack.config.get("packages", scope=scope)
+    config = configuration.get("packages", scope=scope)
     if not config:
         return []
 
@@ -157,33 +164,56 @@ def _compiler_config_from_package_config(config):
 
 
 def _compiler_config_from_external(config):
+    extra_attributes_key = "extra_attributes"
+    compilers_key = "compilers"
+    c_key, cxx_key, fortran_key = "c", "cxx", "fortran"
+
+    # Allow `@x.y.z` instead of `@=x.y.z`
     spec = spack.spec.parse_with_version_concrete(config["spec"])
-    # use str(spec.versions) to allow `@x.y.z` instead of `@=x.y.z`
+
     compiler_spec = spack.spec.CompilerSpec(
         package_name_to_compiler_name.get(spec.name, spec.name), spec.version
     )
 
-    extra_attributes = config.get("extra_attributes", {})
-    prefix = config.get("prefix", None)
+    err_header = f"The external spec '{spec}' cannot be used as a compiler"
 
-    compiler_class = class_for_compiler_name(compiler_spec.name)
-    paths = extra_attributes.get("paths", {})
-    compiler_langs = ["cc", "cxx", "fc", "f77"]
-    for lang in compiler_langs:
-        if paths.setdefault(lang, None):
-            continue
-
-        if not prefix:
-            continue
-
-        # Check for files that satisfy the naming scheme for this compiler
-        bindir = os.path.join(prefix, "bin")
-        for f, regex in itertools.product(os.listdir(bindir), compiler_class.search_regexps(lang)):
-            if regex.match(f):
-                paths[lang] = os.path.join(bindir, f)
-
-    if all(v is None for v in paths.values()):
+    # If extra_attributes is not there I might not want to use this entry as a compiler,
+    # therefore just leave a debug message, but don't be loud with a warning.
+    if extra_attributes_key not in config:
+        tty.debug(f"[{__file__}] {err_header}: missing the '{extra_attributes_key}' key")
         return None
+    extra_attributes = config[extra_attributes_key]
+
+    # If I have 'extra_attributes' warn if 'compilers' is missing, or we don't have a C compiler
+    if compilers_key not in extra_attributes:
+        warnings.warn(
+            f"{err_header}: missing the '{compilers_key}' key under '{extra_attributes_key}'"
+        )
+        return None
+    attribute_compilers = extra_attributes[compilers_key]
+
+    if c_key not in attribute_compilers:
+        warnings.warn(
+            f"{err_header}: missing the C compiler path under "
+            f"'{extra_attributes_key}:{compilers_key}'"
+        )
+        return None
+    c_compiler = attribute_compilers[c_key]
+
+    # C++ and Fortran compilers are not mandatory, so let's just leave a debug trace
+    if cxx_key not in attribute_compilers:
+        tty.debug(f"[{__file__}] The external spec {spec} does not have a C++ compiler")
+
+    if fortran_key not in attribute_compilers:
+        tty.debug(f"[{__file__}] The external spec {spec} does not have a Fortran compiler")
+
+    # compilers format has cc/fc/f77, externals format has "c/fortran"
+    paths = {
+        "cc": c_compiler,
+        "cxx": attribute_compilers.get(cxx_key, None),
+        "fc": attribute_compilers.get(fortran_key, None),
+        "f77": attribute_compilers.get(fortran_key, None),
+    }
 
     if not spec.architecture:
         host_platform = spack.platforms.host()
@@ -216,13 +246,15 @@ def _compiler_config_from_external(config):
     return compiler_entry
 
 
-def _init_compiler_config(*, scope):
+def _init_compiler_config(
+    configuration: "spack.config.Configuration", *, scope: Optional[str]
+) -> None:
     """Compiler search used when Spack has no compilers."""
     compilers = find_compilers()
     compilers_dict = []
     for compiler in compilers:
         compilers_dict.append(_to_dict(compiler))
-    spack.config.set("compilers", compilers_dict, scope=scope)
+    configuration.set("compilers", compilers_dict, scope=scope)
 
 
 def compiler_config_files():
@@ -233,7 +265,7 @@ def compiler_config_files():
         compiler_config = config.get("compilers", scope=name)
         if compiler_config:
             config_files.append(config.get_config_filename(name, "compilers"))
-        compiler_config_from_packages = get_compiler_config_from_packages(scope=name)
+        compiler_config_from_packages = get_compiler_config_from_packages(config, scope=name)
         if compiler_config_from_packages:
             config_files.append(config.get_config_filename(name, "packages"))
     return config_files
@@ -246,7 +278,9 @@ def add_compilers_to_config(compilers, scope=None):
         compilers: a list of Compiler objects.
         scope: configuration scope to modify.
     """
-    compiler_config = get_compiler_config(scope, init_config=False)
+    compiler_config = get_compiler_config(
+        configuration=spack.config.CONFIG, scope=scope, init_config=False
+    )
     for compiler in compilers:
         if not compiler.cc:
             tty.debug(f"{compiler.spec} does not have a C compiler")
@@ -295,7 +329,9 @@ def _remove_compiler_from_scope(compiler_spec, scope):
          True if one or more compiler entries were actually removed, False otherwise
     """
     assert scope is not None, "a specific scope is needed when calling this function"
-    compiler_config = get_compiler_config(scope, init_config=False)
+    compiler_config = get_compiler_config(
+        configuration=spack.config.CONFIG, scope=scope, init_config=False
+    )
     filtered_compiler_config = [
         compiler_entry
         for compiler_entry in compiler_config
@@ -310,21 +346,28 @@ def _remove_compiler_from_scope(compiler_spec, scope):
     # We need to preserve the YAML type for comments, hence we are copying the
     # items in the list that has just been retrieved
     compiler_config[:] = filtered_compiler_config
-    spack.config.set("compilers", compiler_config, scope=scope)
+    spack.config.CONFIG.set("compilers", compiler_config, scope=scope)
     return True
 
 
-def all_compilers_config(scope=None, init_config=True):
+def all_compilers_config(
+    configuration: "spack.config.Configuration",
+    *,
+    scope: Optional[str] = None,
+    init_config: bool = True,
+) -> List["spack.compiler.Compiler"]:
     """Return a set of specs for all the compiler versions currently
     available to build with.  These are instances of CompilerSpec.
     """
-    from_packages_yaml = get_compiler_config_from_packages(scope)
+    from_packages_yaml = get_compiler_config_from_packages(configuration, scope=scope)
     if from_packages_yaml:
         init_config = False
-    from_compilers_yaml = get_compiler_config(scope, init_config)
+    from_compilers_yaml = get_compiler_config(configuration, scope=scope, init_config=init_config)
 
     result = from_compilers_yaml + from_packages_yaml
-    key = lambda c: _compiler_from_config_entry(c["compiler"])
+    # Dedupe entries by the compiler they represent
+    # If the entry is invalid, treat it as unique for deduplication
+    key = lambda c: _compiler_from_config_entry(c["compiler"] or id(c))
     return list(llnl.util.lang.dedupe(result, key=key))
 
 
@@ -332,7 +375,7 @@ def all_compiler_specs(scope=None, init_config=True):
     # Return compiler specs from the merged config.
     return [
         spack.spec.parse_with_version_concrete(s["compiler"]["spec"], compiler=True)
-        for s in all_compilers_config(scope, init_config)
+        for s in all_compilers_config(spack.config.CONFIG, scope=scope, init_config=init_config)
     ]
 
 
@@ -492,11 +535,20 @@ def find_specs_by_arch(compiler_spec, arch_spec, scope=None, init_config=True):
 
 
 def all_compilers(scope=None, init_config=True):
-    config = all_compilers_config(scope, init_config=init_config)
-    compilers = list()
-    for items in config:
+    return all_compilers_from(
+        configuration=spack.config.CONFIG, scope=scope, init_config=init_config
+    )
+
+
+def all_compilers_from(configuration, scope=None, init_config=True):
+    compilers = []
+    for items in all_compilers_config(
+        configuration=configuration, scope=scope, init_config=init_config
+    ):
         items = items["compiler"]
-        compilers.append(_compiler_from_config_entry(items))
+        compiler = _compiler_from_config_entry(items)  # can be None in error case
+        if compiler:
+            compilers.append(compiler)
     return compilers
 
 
@@ -507,7 +559,7 @@ def compilers_for_spec(
     """This gets all compilers that satisfy the supplied CompilerSpec.
     Returns an empty list if none are found.
     """
-    config = all_compilers_config(scope, init_config)
+    config = all_compilers_config(spack.config.CONFIG, scope=scope, init_config=init_config)
 
     matches = set(find(compiler_spec, scope, init_config))
     compilers = []
@@ -517,7 +569,7 @@ def compilers_for_spec(
 
 
 def compilers_for_arch(arch_spec, scope=None):
-    config = all_compilers_config(scope)
+    config = all_compilers_config(spack.config.CONFIG, scope=scope)
     return list(get_compilers(config, arch_spec=arch_spec))
 
 
@@ -603,7 +655,10 @@ def _compiler_from_config_entry(items):
     compiler = _compiler_cache.get(config_id, None)
 
     if compiler is None:
-        compiler = compiler_from_dict(items)
+        try:
+            compiler = compiler_from_dict(items)
+        except UnknownCompilerError as e:
+            warnings.warn(e.message)
         _compiler_cache[config_id] = compiler
 
     return compiler
@@ -656,7 +711,9 @@ def get_compilers(config, cspec=None, arch_spec=None):
                 raise ValueError(msg)
             continue
 
-        compilers.append(_compiler_from_config_entry(items))
+        compiler = _compiler_from_config_entry(items)
+        if compiler:
+            compilers.append(compiler)
 
     return compilers
 
@@ -933,10 +990,11 @@ def _default_make_compilers(cmp_id, paths):
         make_mixed_toolchain(flat_compilers)
 
     # Finally, create the compiler list
-    compilers = []
+    compilers: List["spack.compiler.Compiler"] = []
     for compiler_id, _, compiler in flat_compilers:
         make_compilers = getattr(compiler_id.os, "make_compilers", _default_make_compilers)
-        compilers.extend(make_compilers(compiler_id, compiler))
+        candidates = make_compilers(compiler_id, compiler)
+        compilers.extend(x for x in candidates if x.cc is not None)
 
     return compilers
 

lib/spack/spack/compilers/clang.py

@@ -38,10 +38,10 @@ class Clang(Compiler):
     cxx_names = ["clang++"]
 
     # Subclasses use possible names of Fortran 77 compiler
-    f77_names = ["flang"]
+    f77_names = ["flang-new", "flang"]
 
     # Subclasses use possible names of Fortran 90 compiler
-    fc_names = ["flang"]
+    fc_names = ["flang-new", "flang"]
 
     version_argument = "--version"
 
@@ -96,6 +96,8 @@ def verbose_flag(self):
 
     openmp_flag = "-fopenmp"
 
+    # C++ flags based on CMake Modules/Compiler/Clang.cmake
+
     @property
     def cxx11_flag(self):
         if self.real_version < Version("3.3"):
@@ -120,6 +122,24 @@ def cxx17_flag(self):
 
         return "-std=c++17"
 
+    @property
+    def cxx20_flag(self):
+        if self.real_version < Version("5.0"):
+            raise UnsupportedCompilerFlag(self, "the C++20 standard", "cxx20_flag", "< 5.0")
+        elif self.real_version < Version("11.0"):
+            return "-std=c++2a"
+        else:
+            return "-std=c++20"
+
+    @property
+    def cxx23_flag(self):
+        if self.real_version < Version("12.0"):
+            raise UnsupportedCompilerFlag(self, "the C++23 standard", "cxx23_flag", "< 12.0")
+        elif self.real_version < Version("17.0"):
+            return "-std=c++2b"
+        else:
+            return "-std=c++23"
+
     @property
     def c99_flag(self):
         return "-std=c99"
@@ -142,7 +162,10 @@ def c17_flag(self):
     def c23_flag(self):
         if self.real_version < Version("9.0"):
             raise UnsupportedCompilerFlag(self, "the C23 standard", "c23_flag", "< 9.0")
-        return "-std=c2x"
+        elif self.real_version < Version("18.0"):
+            return "-std=c2x"
+        else:
+            return "-std=c23"
 
     @property
     def cc_pic_flag(self):
@@ -171,10 +194,11 @@ def extract_version_from_output(cls, output):
 
         match = re.search(
             # Normal clang compiler versions are left as-is
-            r"clang version ([^ )\n]+)-svn[~.\w\d-]*|"
+            r"(?:clang|flang-new) version ([^ )\n]+)-svn[~.\w\d-]*|"
             # Don't include hyphenated patch numbers in the version
             # (see https://github.com/spack/spack/pull/14365 for details)
-            r"clang version ([^ )\n]+?)-[~.\w\d-]*|" r"clang version ([^ )\n]+)",
+            r"(?:clang|flang-new) version ([^ )\n]+?)-[~.\w\d-]*|"
+            r"(?:clang|flang-new) version ([^ )\n]+)",
             output,
         )
         if match:

lib/spack/spack/compilers/dpcpp.py

@@ -1,34 +0,0 @@
-# Copyright 2013-2024 Lawrence Livermore National Security, LLC and other
-# Spack Project Developers. See the top-level COPYRIGHT file for details.
-#
-# SPDX-License-Identifier: (Apache-2.0 OR MIT)
-
-import os
-
-import spack.compilers.oneapi
-
-
-class Dpcpp(spack.compilers.oneapi.Oneapi):
-    """This is the same as the oneAPI compiler but uses dpcpp instead of
-    icpx (for DPC++ source files). It explicitly refers to dpcpp, so that
-    CMake test files which check the compiler name (e.g. CMAKE_CXX_COMPILER)
-    detect it as dpcpp.
-
-    Ideally we could switch out icpx for dpcpp where needed in the oneAPI
-    compiler definition, but two things are needed for that: (a) a way to
-    tell the compiler that it should be using dpcpp and (b) a way to
-    customize the link_paths
-
-    See also: https://www.intel.com/content/www/us/en/develop/documentation/oneapi-dpcpp-cpp-compiler-dev-guide-and-reference/top/compiler-setup/using-the-command-line/invoking-the-compiler.html
-    """
-
-    # Subclasses use possible names of C++ compiler
-    cxx_names = ["dpcpp"]
-
-    # Named wrapper links within build_env_path
-    link_paths = {
-        "cc": os.path.join("oneapi", "icx"),
-        "cxx": os.path.join("oneapi", "dpcpp"),
-        "f77": os.path.join("oneapi", "ifx"),
-        "fc": os.path.join("oneapi", "ifx"),
-    }

lib/spack/spack/compilers/msvc.py

@@ -8,7 +8,7 @@
 import subprocess
 import sys
 import tempfile
-from typing import Dict, List, Set
+from typing import Dict, List
 
 import archspec.cpu
 
@@ -20,15 +20,7 @@
 from spack.error import SpackError
 from spack.version import Version, VersionRange
 
-avail_fc_version: Set[str] = set()
-fc_path: Dict[str, str] = dict()
-
-fortran_mapping = {
-    "2021.3.0": "19.29.30133",
-    "2021.2.1": "19.28.29913",
-    "2021.2.0": "19.28.29334",
-    "2021.1.0": "19.28.29333",
-}
+FC_PATH: Dict[str, str] = dict()
 
 
 class CmdCall:
@@ -115,15 +107,13 @@ def command_str(self):
         return f"{script} {self.arch} {self.sdk_ver} {self.vcvars_ver}"
 
 
-def get_valid_fortran_pth(comp_ver):
-    cl_ver = str(comp_ver)
+def get_valid_fortran_pth():
+    """Assign maximum available fortran compiler version"""
+    # TODO (johnwparent): validate compatibility w/ try compiler
+    # functionality when added
     sort_fn = lambda fc_ver: Version(fc_ver)
-    sort_fc_ver = sorted(list(avail_fc_version), key=sort_fn)
-    for ver in sort_fc_ver:
-        if ver in fortran_mapping:
-            if Version(cl_ver) <= Version(fortran_mapping[ver]):
-                return fc_path[ver]
-    return None
+    sort_fc_ver = sorted(list(FC_PATH.keys()), key=sort_fn)
+    return FC_PATH[sort_fc_ver[-1]] if sort_fc_ver else None
 
 
 class Msvc(Compiler):
@@ -167,11 +157,9 @@ def __init__(self, *args, **kwargs):
         # This positional argument "paths" is later parsed and process by the base class
         # via the call to `super` later in this method
         paths = args[3]
-        # This positional argument "cspec" is also parsed and handled by the base class
-        # constructor
-        cspec = args[0]
-        new_pth = [pth if pth else get_valid_fortran_pth(cspec.version) for pth in paths]
-        paths[:] = new_pth
+        latest_fc = get_valid_fortran_pth()
+        new_pth = [pth if pth else latest_fc for pth in paths[2:]]
+        paths[2:] = new_pth
         # Initialize, deferring to base class but then adding the vcvarsallfile
         # file based on compiler executable path.
         super().__init__(*args, **kwargs)
@@ -183,7 +171,7 @@ def __init__(self, *args, **kwargs):
         # and stores their path, but their respective VCVARS
         # file must be invoked before useage.
         env_cmds = []
-        compiler_root = os.path.join(self.cc, "../../../../../../..")
+        compiler_root = os.path.join(os.path.dirname(self.cc), "../../../../../..")
         vcvars_script_path = os.path.join(compiler_root, "Auxiliary", "Build", "vcvars64.bat")
         # get current platform architecture and format for vcvars argument
         arch = spack.platforms.real_host().default.lower()
@@ -198,11 +186,34 @@ def __init__(self, *args, **kwargs):
         # paths[2] refers to the fc path and is a generic check
         # for a fortran compiler
         if paths[2]:
+
+            def get_oneapi_root(pth: str):
+                """From within a prefix known to be a oneAPI path
+                determine the oneAPI root path from arbitrary point
+                under root
+
+                Args:
+                    pth: path prefixed within oneAPI root
+                """
+                if not pth:
+                    return ""
+                while os.path.basename(pth) and os.path.basename(pth) != "oneAPI":
+                    pth = os.path.dirname(pth)
+                return pth
+
             # If this found, it sets all the vars
-            oneapi_root = os.getenv("ONEAPI_ROOT")
+            oneapi_root = get_oneapi_root(self.fc)
+            if not oneapi_root:
+                raise RuntimeError(f"Non-oneAPI Fortran compiler {self.fc} assigned to MSVC")
             oneapi_root_setvars = os.path.join(oneapi_root, "setvars.bat")
+            # some oneAPI exes return a version more precise than their
+            # install paths specify, so we determine path from
+            # the install path rather than the fc executable itself
+            numver = r"\d+\.\d+(?:\.\d+)?"
+            pattern = f"((?:{numver})|(?:latest))"
+            version_from_path = re.search(pattern, self.fc).group(1)
             oneapi_version_setvars = os.path.join(
-                oneapi_root, "compiler", str(self.ifx_version), "env", "vars.bat"
+                oneapi_root, "compiler", version_from_path, "env", "vars.bat"
             )
             # order matters here, the specific version env must be invoked first,
             # otherwise it will be ignored if the root setvars sets up the oneapi
@@ -314,23 +325,19 @@ def setup_custom_environment(self, pkg, env):
 
     @classmethod
     def fc_version(cls, fc):
-        # We're using intel for the Fortran compilers, which exist if
-        # ONEAPI_ROOT is a meaningful variable
         if not sys.platform == "win32":
             return "unknown"
         fc_ver = cls.default_version(fc)
-        avail_fc_version.add(fc_ver)
-        fc_path[fc_ver] = fc
-        if os.getenv("ONEAPI_ROOT"):
-            try:
-                sps = spack.operating_systems.windows_os.WindowsOs().compiler_search_paths
-            except AttributeError:
-                raise SpackError("Windows compiler search paths not established")
-            clp = spack.util.executable.which_string("cl", path=sps)
-            ver = cls.default_version(clp)
-        else:
-            ver = fc_ver
-        return ver
+        FC_PATH[fc_ver] = fc
+        try:
+            sps = spack.operating_systems.windows_os.WindowsOs().compiler_search_paths
+        except AttributeError:
+            raise SpackError(
+                "Windows compiler search paths not established, "
+                "please report this behavior to github.com/spack/spack"
+            )
+        clp = spack.util.executable.which_string("cl", path=sps)
+        return cls.default_version(clp) if clp else fc_ver
 
     @classmethod
     def f77_version(cls, f77):

lib/spack/spack/compilers/nag.py

@@ -64,7 +64,7 @@ def verbose_flag(self):
         #
         # This way, we at least enable the implicit rpath detection, which is
         # based on compilation of a C file (see method
-        # spack.compiler._get_compiler_link_paths): in the case of a mixed
+        # spack.compiler._compile_dummy_c_source): in the case of a mixed
         # NAG/GCC toolchain, the flag will be passed to g++ (e.g.
         # 'g++ -Wl,-v ./main.c'), otherwise, the flag will be passed to nagfor
         # (e.g. 'nagfor -Wl,-v ./main.c' - note that nagfor recognizes '.c'

lib/spack/spack/concretize.py

@@ -74,6 +74,10 @@ class Concretizer:
     #: during concretization. Used for testing and for mirror creation
     check_for_compiler_existence = None
 
+    #: Packages that the old concretizer cannot deal with correctly, and cannot build anyway.
+    #: Those will not be considered as providers for virtuals.
+    non_buildable_packages = {"glibc", "musl"}
+
     def __init__(self, abstract_spec=None):
         if Concretizer.check_for_compiler_existence is None:
             Concretizer.check_for_compiler_existence = not spack.config.get(
@@ -113,7 +117,11 @@ def _valid_virtuals_and_externals(self, spec):
         pref_key = lambda spec: 0  # no-op pref key
 
         if spec.virtual:
-            candidates = spack.repo.PATH.providers_for(spec)
+            candidates = [
+                s
+                for s in spack.repo.PATH.providers_for(spec)
+                if s.name not in self.non_buildable_packages
+            ]
             if not candidates:
                 raise spack.error.UnsatisfiableProviderSpecError(candidates[0], spec)
 

lib/spack/spack/config.py

@@ -1562,8 +1562,9 @@ def ensure_latest_format_fn(section: str) -> Callable[[YamlConfigDict], bool]:
 def use_configuration(
     *scopes_or_paths: Union[ConfigScope, str]
 ) -> Generator[Configuration, None, None]:
-    """Use the configuration scopes passed as arguments within the
-    context manager.
+    """Use the configuration scopes passed as arguments within the context manager.
+
+    This function invalidates caches, and is therefore very slow.
 
     Args:
         *scopes_or_paths: scope objects or paths to be used

lib/spack/spack/container/images.json

@@ -12,26 +12,26 @@
       },
       "os_package_manager": "yum_amazon"
     },
-    "fedora:38": {
+    "fedora:40": {
       "bootstrap": {
-        "template": "container/fedora_38.dockerfile",
-        "image": "docker.io/fedora:38"
+        "template": "container/fedora.dockerfile",
+        "image": "docker.io/fedora:40"
       },
       "os_package_manager": "dnf",
-      "build": "spack/fedora38",
+      "build": "spack/fedora40",
       "final": {
-        "image": "docker.io/fedora:38"
+        "image": "docker.io/fedora:40"
       }
     },
-    "fedora:37": {
+    "fedora:39": {
       "bootstrap": {
-        "template": "container/fedora_37.dockerfile",
-        "image": "docker.io/fedora:37"
+        "template": "container/fedora.dockerfile",
+        "image": "docker.io/fedora:39"
       },
       "os_package_manager": "dnf",
-      "build": "spack/fedora37",
+      "build": "spack/fedora39",
       "final": {
-        "image": "docker.io/fedora:37"
+        "image": "docker.io/fedora:39"
       }
     },
     "rockylinux:9": {
@@ -116,6 +116,13 @@
       },
       "os_package_manager": "apt"
     },
+    "ubuntu:24.04": {
+      "bootstrap": {
+        "template": "container/ubuntu_2404.dockerfile"
+      },
+      "os_package_manager": "apt",
+      "build": "spack/ubuntu-noble"
+    },
     "ubuntu:22.04": {
       "bootstrap": {
         "template": "container/ubuntu_2204.dockerfile"
@@ -129,13 +136,6 @@
       },
       "build": "spack/ubuntu-focal",
       "os_package_manager": "apt"
-    },
-    "ubuntu:18.04": {
-      "bootstrap": {
-        "template": "container/ubuntu_1804.dockerfile"
-      },
-      "os_package_manager": "apt",
-      "build": "spack/ubuntu-bionic"
     }
   },
   "os_package_managers": {

lib/spack/spack/database.py

@@ -25,6 +25,7 @@
 import socket
 import sys
 import time
+from json import JSONDecoder
 from typing import (
     Any,
     Callable,
@@ -818,7 +819,8 @@ def _read_from_file(self, filename):
         """
         try:
             with open(filename, "r") as f:
-                fdata = sjson.load(f)
+                # In the future we may use a stream of JSON objects, hence `raw_decode` for compat.
+                fdata, _ = JSONDecoder().raw_decode(f.read())
         except Exception as e:
             raise CorruptDatabaseError("error parsing database:", str(e)) from e
 
@@ -833,27 +835,24 @@ def check(cond, msg):
 
         # High-level file checks
         db = fdata["database"]
-        check("installs" in db, "no 'installs' in JSON DB.")
         check("version" in db, "no 'version' in JSON DB.")
 
-        installs = db["installs"]
-
         # TODO: better version checking semantics.
         version = vn.Version(db["version"])
         if version > _DB_VERSION:
             raise InvalidDatabaseVersionError(self, _DB_VERSION, version)
-        elif version < _DB_VERSION:
-            if not any(old == version and new == _DB_VERSION for old, new in _SKIP_REINDEX):
-                tty.warn(
-                    "Spack database version changed from %s to %s. Upgrading."
-                    % (version, _DB_VERSION)
-                )
+        elif version < _DB_VERSION and not any(
+            old == version and new == _DB_VERSION for old, new in _SKIP_REINDEX
+        ):
+            tty.warn(f"Spack database version changed from {version} to {_DB_VERSION}. Upgrading.")
 
-                self.reindex(spack.store.STORE.layout)
-                installs = dict(
-                    (k, v.to_dict(include_fields=self._record_fields))
-                    for k, v in self._data.items()
-                )
+            self.reindex(spack.store.STORE.layout)
+            installs = dict(
+                (k, v.to_dict(include_fields=self._record_fields)) for k, v in self._data.items()
+            )
+        else:
+            check("installs" in db, "no 'installs' in JSON DB.")
+            installs = db["installs"]
 
         spec_reader = reader(version)
 

lib/spack/spack/detection/path.py

@@ -83,26 +83,15 @@ def executables_in_path(path_hints: List[str]) -> Dict[str, str]:
     return path_to_dict(search_paths)
 
 
-def get_elf_compat(path):
-    """For ELF files, get a triplet (EI_CLASS, EI_DATA, e_machine) and see if
-    it is host-compatible."""
-    # On ELF platforms supporting, we try to be a bit smarter when it comes to shared
-    # libraries, by dropping those that are not host compatible.
-    with open(path, "rb") as f:
-        elf = elf_utils.parse_elf(f, only_header=True)
-        return (elf.is_64_bit, elf.is_little_endian, elf.elf_hdr.e_machine)
-
-
 def accept_elf(path, host_compat):
-    """Accept an ELF file if the header matches the given compat triplet,
-    obtained with :py:func:`get_elf_compat`. In case it's not an ELF (e.g.
-    static library, or some arbitrary file, fall back to is_readable_file)."""
+    """Accept an ELF file if the header matches the given compat triplet. In case it's not an ELF
+    (e.g. static library, or some arbitrary file, fall back to is_readable_file)."""
     # Fast path: assume libraries at least have .so in their basename.
     # Note: don't replace with splitext, because of libsmth.so.1.2.3 file names.
     if ".so" not in os.path.basename(path):
         return llnl.util.filesystem.is_readable_file(path)
     try:
-        return host_compat == get_elf_compat(path)
+        return host_compat == elf_utils.get_elf_compat(path)
     except (OSError, elf_utils.ElfParsingError):
         return llnl.util.filesystem.is_readable_file(path)
 
@@ -155,7 +144,7 @@ def libraries_in_ld_and_system_library_path(
     search_paths = list(llnl.util.lang.dedupe(search_paths, key=file_identifier))
 
     try:
-        host_compat = get_elf_compat(sys.executable)
+        host_compat = elf_utils.get_elf_compat(sys.executable)
         accept = lambda path: accept_elf(path, host_compat)
     except (OSError, elf_utils.ElfParsingError):
         accept = llnl.util.filesystem.is_readable_file

lib/spack/spack/detection/test.py

@@ -11,6 +11,7 @@
 
 from llnl.util import filesystem
 
+import spack.platforms
 import spack.repo
 import spack.spec
 from spack.util import spack_yaml
@@ -32,6 +33,8 @@ class ExpectedTestResult(NamedTuple):
 
     #: Spec to be detected
     spec: str
+    #: Attributes expected in the external spec
+    extra_attributes: Dict[str, str]
 
 
 class DetectionTest(NamedTuple):
@@ -100,7 +103,10 @@ def _create_executable_scripts(self, mock_executables: MockExecutables) -> List[
 
     @property
     def expected_specs(self) -> List[spack.spec.Spec]:
-        return [spack.spec.Spec(r.spec) for r in self.test.results]
+        return [
+            spack.spec.Spec.from_detection(item.spec, extra_attributes=item.extra_attributes)
+            for item in self.test.results
+        ]
 
 
 def detection_tests(pkg_name: str, repository: spack.repo.RepoPath) -> List[Runner]:
@@ -117,9 +123,13 @@ def detection_tests(pkg_name: str, repository: spack.repo.RepoPath) -> List[Runn
     """
     result = []
     detection_tests_content = read_detection_tests(pkg_name, repository)
+    current_platform = str(spack.platforms.host())
 
     tests_by_path = detection_tests_content.get("paths", [])
     for single_test_data in tests_by_path:
+        if current_platform not in single_test_data.get("platforms", [current_platform]):
+            continue
+
         mock_executables = []
         for layout in single_test_data["layout"]:
             mock_executables.append(
@@ -127,7 +137,11 @@ def detection_tests(pkg_name: str, repository: spack.repo.RepoPath) -> List[Runn
             )
         expected_results = []
         for assertion in single_test_data["results"]:
-            expected_results.append(ExpectedTestResult(spec=assertion["spec"]))
+            expected_results.append(
+                ExpectedTestResult(
+                    spec=assertion["spec"], extra_attributes=assertion.get("extra_attributes", {})
+                )
+            )
 
         current_test = DetectionTest(
             pkg_name=pkg_name, layout=mock_executables, results=expected_results

lib/spack/spack/directives.py

@@ -27,6 +27,7 @@ class OpenMpi(Package):
   * ``variant``
   * ``version``
   * ``requires``
+  * ``redistribute``
 
 """
 import collections
@@ -63,6 +64,7 @@ class OpenMpi(Package):
 __all__ = [
     "DirectiveError",
     "DirectiveMeta",
+    "DisableRedistribute",
     "version",
     "conflicts",
     "depends_on",
@@ -75,6 +77,7 @@ class OpenMpi(Package):
     "resource",
     "build_system",
     "requires",
+    "redistribute",
 ]
 
 #: These are variant names used by Spack internally; packages can't use them
@@ -598,9 +601,68 @@ def _execute_depends_on(pkg: "spack.package_base.PackageBase"):
     return _execute_depends_on
 
 
+#: Store whether a given Spec source/binary should not be redistributed.
+class DisableRedistribute:
+    def __init__(self, source, binary):
+        self.source = source
+        self.binary = binary
+
+
+@directive("disable_redistribute")
+def redistribute(source=None, binary=None, when: WhenType = None):
+    """Can be used inside a Package definition to declare that
+    the package source and/or compiled binaries should not be
+    redistributed.
+
+    By default, Packages allow source/binary distribution (i.e. in
+    mirrors). Because of this, and because overlapping enable/
+    disable specs are not allowed, this directive only allows users
+    to explicitly disable redistribution for specs.
+    """
+
+    return lambda pkg: _execute_redistribute(pkg, source, binary, when)
+
+
+def _execute_redistribute(
+    pkg: "spack.package_base.PackageBase", source=None, binary=None, when: WhenType = None
+):
+    if source is None and binary is None:
+        return
+    elif (source is True) or (binary is True):
+        raise DirectiveError(
+            "Source/binary distribution are true by default, they can only "
+            "be explicitly disabled."
+        )
+
+    if source is None:
+        source = True
+    if binary is None:
+        binary = True
+
+    when_spec = _make_when_spec(when)
+    if not when_spec:
+        return
+    if source is False:
+        max_constraint = spack.spec.Spec(f"{pkg.name}@{when_spec.versions}")
+        if not max_constraint.satisfies(when_spec):
+            raise DirectiveError("Source distribution can only be disabled for versions")
+
+    if when_spec in pkg.disable_redistribute:
+        disable = pkg.disable_redistribute[when_spec]
+        if not source:
+            disable.source = True
+        if not binary:
+            disable.binary = True
+    else:
+        pkg.disable_redistribute[when_spec] = DisableRedistribute(
+            source=not source, binary=not binary
+        )
+
+
 @directive(("extendees", "dependencies"))
 def extends(spec, when=None, type=("build", "run"), patches=None):
     """Same as depends_on, but also adds this package to the extendee list.
+    In case of Python, also adds a dependency on python-venv.
 
     keyword arguments can be passed to extends() so that extension
     packages can pass parameters to the extendee's extension
@@ -616,6 +678,11 @@ def _execute_extends(pkg):
         _depends_on(pkg, spec, when=when, type=type, patches=patches)
         spec_obj = spack.spec.Spec(spec)
 
+        # When extending python, also add a dependency on python-venv. This is done so that
+        # Spack environment views are Python virtual environments.
+        if spec_obj.name == "python" and not pkg.name == "python-venv":
+            _depends_on(pkg, "python-venv", when=when, type=("build", "run"))
+
         # TODO: the values of the extendees dictionary are not used. Remove in next refactor.
         pkg.extendees[spec_obj.name] = (spec_obj, None)
 

lib/spack/spack/directory_layout.py

@@ -15,6 +15,7 @@
 
 import llnl.util.filesystem as fs
 import llnl.util.tty as tty
+from llnl.util.symlink import readlink
 
 import spack.config
 import spack.hash_types as ht
@@ -181,7 +182,7 @@ def deprecated_file_path(self, deprecated_spec, deprecator_spec=None):
         base_dir = (
             self.path_for_spec(deprecator_spec)
             if deprecator_spec
-            else os.readlink(deprecated_spec.prefix)
+            else readlink(deprecated_spec.prefix)
         )
 
         yaml_path = os.path.join(

lib/spack/spack/environment/__init__.py

@@ -34,6 +34,9 @@
       * ``spec``: a string representation of the abstract spec that was concretized
 
   4. ``concrete_specs``: a dictionary containing the specs in the environment.
+  5. ``include_concrete`` (dictionary): an optional dictionary that includes the roots
+     and concrete specs from the included environments, keyed by the path to that
+     environment
 
 Compatibility
 -------------
@@ -50,26 +53,37 @@
      - ``v2``
      - ``v3``
      - ``v4``
+     - ``v5``
    * - ``v0.12:0.14``
      - ✅
      -
      -
      -
+     -
    * - ``v0.15:0.16``
      - ✅
      - ✅
      -
      -
+     -
    * - ``v0.17``
      - ✅
      - ✅
      - ✅
      -
+     -
    * - ``v0.18:``
      - ✅
      - ✅
      - ✅
      - ✅
+     -
+   * - ``v0.22:``
+     - ✅
+     - ✅
+     - ✅
+     - ✅
+     - ✅
 
 Version 1
 ---------
@@ -334,6 +348,118 @@
             }
         }
     }
+
+
+Version 5
+---------
+
+Version 5 doesn't change the top-level lockfile format, but an optional dictionary is
+added. The dictionary has the ``root`` and ``concrete_specs`` of the included
+environments, which are keyed by the path to that environment. Since this is optional
+if the environment does not have any included environments ``include_concrete`` will
+not be a part of the lockfile.
+
+.. code-block:: json
+
+    {
+        "_meta": {
+            "file-type": "spack-lockfile",
+            "lockfile-version": 5,
+            "specfile-version": 3
+        },
+        "roots": [
+            {
+                "hash": "<dag_hash 1>",
+                "spec": "<abstract spec 1>"
+            },
+            {
+                "hash": "<dag_hash 2>",
+                "spec": "<abstract spec 2>"
+            }
+        ],
+        "concrete_specs": {
+            "<dag_hash 1>": {
+                "... <spec dict attributes> ...": { },
+                "dependencies": [
+                    {
+                        "name": "depname_1",
+                        "hash": "<dag_hash for depname_1>",
+                        "type": ["build", "link"]
+                    },
+                    {
+                        "name": "depname_2",
+                        "hash": "<dag_hash for depname_2>",
+                        "type": ["build", "link"]
+                    }
+                ],
+                "hash": "<dag_hash 1>",
+            },
+            "<daghash 2>": {
+                "... <spec dict attributes> ...": { },
+                "dependencies": [
+                    {
+                        "name": "depname_3",
+                        "hash": "<dag_hash for depname_3>",
+                        "type": ["build", "link"]
+                    },
+                    {
+                        "name": "depname_4",
+                        "hash": "<dag_hash for depname_4>",
+                        "type": ["build", "link"]
+                    }
+                ],
+                "hash": "<dag_hash 2>"
+            }
+        }
+        "include_concrete": {
+            "<path to environment>": {
+                "roots": [
+                    {
+                        "hash": "<dag_hash 1>",
+                        "spec": "<abstract spec 1>"
+                    },
+                    {
+                        "hash": "<dag_hash 2>",
+                        "spec": "<abstract spec 2>"
+                    }
+                ],
+                "concrete_specs": {
+                    "<dag_hash 1>": {
+                        "... <spec dict attributes> ...": { },
+                        "dependencies": [
+                            {
+                                "name": "depname_1",
+                                "hash": "<dag_hash for depname_1>",
+                                "type": ["build", "link"]
+                            },
+                            {
+                                "name": "depname_2",
+                                "hash": "<dag_hash for depname_2>",
+                                "type": ["build", "link"]
+                            }
+                        ],
+                        "hash": "<dag_hash 1>",
+                    },
+                    "<daghash 2>": {
+                        "... <spec dict attributes> ...": { },
+                        "dependencies": [
+                            {
+                                "name": "depname_3",
+                                "hash": "<dag_hash for depname_3>",
+                                "type": ["build", "link"]
+                            },
+                            {
+                                "name": "depname_4",
+                                "hash": "<dag_hash for depname_4>",
+                                "type": ["build", "link"]
+                            }
+                        ],
+                        "hash": "<dag_hash 2>"
+                    }
+                }
+            }
+        }
+    }
 """
 
 from .environment import (

lib/spack/spack/environment/environment.py

@@ -16,13 +16,13 @@
 import urllib.parse
 import urllib.request
 import warnings
-from typing import Dict, Iterable, List, Optional, Set, Tuple, Union
+from typing import Any, Dict, Iterable, List, Optional, Set, Tuple, Union
 
 import llnl.util.filesystem as fs
 import llnl.util.tty as tty
 import llnl.util.tty.color as clr
 from llnl.util.link_tree import ConflictingSpecsError
-from llnl.util.symlink import symlink
+from llnl.util.symlink import readlink, symlink
 
 import spack.compilers
 import spack.concretize
@@ -106,17 +106,16 @@ def environment_name(path: Union[str, pathlib.Path]) -> str:
         return path_str
 
 
-def check_disallowed_env_config_mods(scopes):
+def ensure_no_disallowed_env_config_mods(scopes: List[spack.config.ConfigScope]) -> None:
     for scope in scopes:
-        with spack.config.use_configuration(scope):
-            if spack.config.get("config:environments_root"):
-                raise SpackEnvironmentError(
-                    "Spack environments are prohibited from modifying 'config:environments_root' "
-                    "because it can make the definition of the environment ill-posed. Please "
-                    "remove from your environment and place it in a permanent scope such as "
-                    "defaults, system, site, etc."
-                )
-    return scopes
+        config = scope.get_section("config")
+        if config and "environments_root" in config["config"]:
+            raise SpackEnvironmentError(
+                "Spack environments are prohibited from modifying 'config:environments_root' "
+                "because it can make the definition of the environment ill-posed. Please "
+                "remove from your environment and place it in a permanent scope such as "
+                "defaults, system, site, etc."
+            )
 
 
 def default_manifest_yaml():
@@ -160,6 +159,8 @@ def default_manifest_yaml():
 default_view_name = "default"
 # Default behavior to link all packages into views (vs. only root packages)
 default_view_link = "all"
+# The name for any included concrete specs
+included_concrete_name = "include_concrete"
 
 
 def installed_specs():
@@ -294,6 +295,7 @@ def create(
     init_file: Optional[Union[str, pathlib.Path]] = None,
     with_view: Optional[Union[str, pathlib.Path, bool]] = None,
     keep_relative: bool = False,
+    include_concrete: Optional[List[str]] = None,
 ) -> "Environment":
     """Create a managed environment in Spack and returns it.
 
@@ -310,10 +312,15 @@ def create(
             string, it specifies the path to the view
         keep_relative: if True, develop paths are copied verbatim into the new environment file,
             otherwise they are made absolute
+        include_concrete: list of concrete environment names/paths to be included
     """
     environment_dir = environment_dir_from_name(name, exists_ok=False)
     return create_in_dir(
-        environment_dir, init_file=init_file, with_view=with_view, keep_relative=keep_relative
+        environment_dir,
+        init_file=init_file,
+        with_view=with_view,
+        keep_relative=keep_relative,
+        include_concrete=include_concrete,
     )
 
 
@@ -322,6 +329,7 @@ def create_in_dir(
     init_file: Optional[Union[str, pathlib.Path]] = None,
     with_view: Optional[Union[str, pathlib.Path, bool]] = None,
     keep_relative: bool = False,
+    include_concrete: Optional[List[str]] = None,
 ) -> "Environment":
     """Create an environment in the directory passed as input and returns it.
 
@@ -335,6 +343,7 @@ def create_in_dir(
             string, it specifies the path to the view
         keep_relative: if True, develop paths are copied verbatim into the new environment file,
             otherwise they are made absolute
+        include_concrete: concrete environment names/paths to be included
     """
     initialize_environment_dir(root, envfile=init_file)
 
@@ -347,6 +356,12 @@ def create_in_dir(
         if with_view is not None:
             manifest.set_default_view(with_view)
 
+        if include_concrete is not None:
+            set_included_envs_to_env_paths(include_concrete)
+            validate_included_envs_exists(include_concrete)
+            validate_included_envs_concrete(include_concrete)
+            manifest.set_include_concrete(include_concrete)
+
         manifest.flush()
 
     except (spack.config.ConfigFormatError, SpackEnvironmentConfigError) as e:
@@ -420,6 +435,67 @@ def ensure_env_root_path_exists():
         fs.mkdirp(env_root_path())
 
 
+def set_included_envs_to_env_paths(include_concrete: List[str]) -> None:
+    """If the included environment(s) is the environment name
+    it is replaced by the path to the environment
+
+    Args:
+        include_concrete: list of env name or path to env"""
+
+    for i, env_name in enumerate(include_concrete):
+        if is_env_dir(env_name):
+            include_concrete[i] = env_name
+        elif exists(env_name):
+            include_concrete[i] = root(env_name)
+
+
+def validate_included_envs_exists(include_concrete: List[str]) -> None:
+    """Checks that all of the included environments exist
+
+    Args:
+       include_concrete: list of already existing concrete environments to include
+
+    Raises:
+        SpackEnvironmentError: if any of the included environments do not exist
+    """
+
+    missing_envs = set()
+
+    for i, env_name in enumerate(include_concrete):
+        if not is_env_dir(env_name):
+            missing_envs.add(env_name)
+
+    if missing_envs:
+        msg = "The following environment(s) are missing: {0}".format(", ".join(missing_envs))
+        raise SpackEnvironmentError(msg)
+
+
+def validate_included_envs_concrete(include_concrete: List[str]) -> None:
+    """Checks that all of the included environments are concrete
+
+    Args:
+        include_concrete: list of already existing concrete environments to include
+
+    Raises:
+        SpackEnvironmentError: if any of the included environments are not concrete
+    """
+
+    non_concrete_envs = set()
+
+    for env_path in include_concrete:
+        if not os.path.exists(Environment(env_path).lock_path):
+            non_concrete_envs.add(Environment(env_path).name)
+
+    if non_concrete_envs:
+        msg = "The following environment(s) are not concrete: {0}\n" "Please run:".format(
+            ", ".join(non_concrete_envs)
+        )
+        for env in non_concrete_envs:
+            msg += f"\n\t`spack -e {env} concretize`"
+
+        raise SpackEnvironmentError(msg)
+
+
 def all_environment_names():
     """List the names of environments that currently exist."""
     # just return empty if the env path does not exist.  A read-only
@@ -586,7 +662,7 @@ def _current_root(self):
         if not os.path.islink(self.root):
             return None
 
-        root = os.readlink(self.root)
+        root = readlink(self.root)
         if os.path.isabs(root):
             return root
 
@@ -822,6 +898,18 @@ def __init__(self, manifest_dir: Union[str, pathlib.Path]) -> None:
         self.specs_by_hash: Dict[str, Spec] = {}
         #: Repository for this environment (memoized)
         self._repo = None
+
+        #: Environment paths for concrete (lockfile) included environments
+        self.included_concrete_envs: List[str] = []
+        #: First-level included concretized spec data from/to the lockfile.
+        self.included_concrete_spec_data: Dict[str, Dict[str, List[str]]] = {}
+        #: User specs from included environments from the last concretization
+        self.included_concretized_user_specs: Dict[str, List[Spec]] = {}
+        #: Roots from included environments with the last concretization, in order
+        self.included_concretized_order: Dict[str, List[str]] = {}
+        #: Concretized specs by hash from the included environments
+        self.included_specs_by_hash: Dict[str, Dict[str, Spec]] = {}
+
         #: Previously active environment
         self._previous_active = None
         self._dev_specs = None
@@ -859,7 +947,7 @@ def _read(self):
 
         if os.path.exists(self.lock_path):
             with open(self.lock_path) as f:
-                read_lock_version = self._read_lockfile(f)
+                read_lock_version = self._read_lockfile(f)["_meta"]["lockfile-version"]
 
             if read_lock_version == 1:
                 tty.debug(f"Storing backup of {self.lock_path} at {self._lock_backup_v1_path}")
@@ -927,6 +1015,20 @@ def add_view(name, values):
         if self.views == dict():
             self.views[default_view_name] = ViewDescriptor(self.path, self.view_path_default)
 
+    def _process_concrete_includes(self):
+        """Extract and load into memory included concrete spec data."""
+        self.included_concrete_envs = self.manifest[TOP_LEVEL_KEY].get(included_concrete_name, [])
+
+        if self.included_concrete_envs:
+            if os.path.exists(self.lock_path):
+                with open(self.lock_path) as f:
+                    data = self._read_lockfile(f)
+
+                if included_concrete_name in data:
+                    self.included_concrete_spec_data = data[included_concrete_name]
+            else:
+                self.include_concrete_envs()
+
     def _construct_state_from_manifest(self):
         """Set up user specs and views from the manifest file."""
         self.spec_lists = collections.OrderedDict()
@@ -943,6 +1045,31 @@ def _construct_state_from_manifest(self):
         self.spec_lists[user_speclist_name] = user_specs
 
         self._process_view(spack.config.get("view", True))
+        self._process_concrete_includes()
+
+    def all_concretized_user_specs(self) -> List[Spec]:
+        """Returns all of the concretized user specs of the environment and
+        its included environment(s)."""
+        concretized_user_specs = self.concretized_user_specs[:]
+        for included_specs in self.included_concretized_user_specs.values():
+            for included in included_specs:
+                # Don't duplicate included spec(s)
+                if included not in concretized_user_specs:
+                    concretized_user_specs.append(included)
+
+        return concretized_user_specs
+
+    def all_concretized_orders(self) -> List[str]:
+        """Returns all of the concretized order of the environment and
+        its included environment(s)."""
+        concretized_order = self.concretized_order[:]
+        for included_concretized_order in self.included_concretized_order.values():
+            for included in included_concretized_order:
+                # Don't duplicate included spec(s)
+                if included not in concretized_order:
+                    concretized_order.append(included)
+
+        return concretized_order
 
     @property
     def user_specs(self):
@@ -967,6 +1094,26 @@ def _read_dev_specs(self):
             dev_specs[name] = local_entry
         return dev_specs
 
+    @property
+    def included_user_specs(self) -> SpecList:
+        """Included concrete user (or root) specs from last concretization."""
+        spec_list = SpecList()
+
+        if not self.included_concrete_envs:
+            return spec_list
+
+        def add_root_specs(included_concrete_specs):
+            # add specs from the include *and* any nested includes it may have
+            for env, info in included_concrete_specs.items():
+                for root_list in info["roots"]:
+                    spec_list.add(root_list["spec"])
+
+                if "include_concrete" in info:
+                    add_root_specs(info["include_concrete"])
+
+        add_root_specs(self.included_concrete_spec_data)
+        return spec_list
+
     def clear(self, re_read=False):
         """Clear the contents of the environment
 
@@ -978,9 +1125,15 @@ def clear(self, re_read=False):
         self.spec_lists[user_speclist_name] = SpecList()
 
         self._dev_specs = {}
-        self.concretized_user_specs = []  # user specs from last concretize
         self.concretized_order = []  # roots of last concretize, in order
+        self.concretized_user_specs = []  # user specs from last concretize
         self.specs_by_hash = {}  # concretized specs by hash
+
+        self.included_concrete_spec_data = {}  # concretized specs from lockfile of included envs
+        self.included_concretized_order = {}  # root specs of the included envs, keyed by env path
+        self.included_concretized_user_specs = {}  # user specs from last concretize's included env
+        self.included_specs_by_hash = {}  # concretized specs by hash from the included envs
+
         self.invalidate_repository_cache()
         self._previous_active = None  # previously active environment
         if not re_read:
@@ -1034,6 +1187,55 @@ def scope_name(self):
         """Name of the config scope of this environment's manifest file."""
         return self.manifest.scope_name
 
+    def include_concrete_envs(self):
+        """Copy and save the included envs' specs internally"""
+
+        lockfile_meta = None
+        root_hash_seen = set()
+        concrete_hash_seen = set()
+        self.included_concrete_spec_data = {}
+
+        for env_path in self.included_concrete_envs:
+            # Check that environment exists
+            if not is_env_dir(env_path):
+                raise SpackEnvironmentError(f"Unable to find env at {env_path}")
+
+            env = Environment(env_path)
+
+            with open(env.lock_path) as f:
+                lockfile_as_dict = env._read_lockfile(f)
+
+            # Lockfile_meta must match each env and use at least format version 5
+            if lockfile_meta is None:
+                lockfile_meta = lockfile_as_dict["_meta"]
+            elif lockfile_meta != lockfile_as_dict["_meta"]:
+                raise SpackEnvironmentError("All lockfile _meta values must match")
+            elif lockfile_meta["lockfile-version"] < 5:
+                raise SpackEnvironmentError("The lockfile format must be at version 5 or higher")
+
+            # Copy unique root specs from env
+            self.included_concrete_spec_data[env_path] = {"roots": []}
+            for root_dict in lockfile_as_dict["roots"]:
+                if root_dict["hash"] not in root_hash_seen:
+                    self.included_concrete_spec_data[env_path]["roots"].append(root_dict)
+                    root_hash_seen.add(root_dict["hash"])
+
+            # Copy unique concrete specs from env
+            for concrete_spec in lockfile_as_dict["concrete_specs"]:
+                if concrete_spec not in concrete_hash_seen:
+                    self.included_concrete_spec_data[env_path].update(
+                        {"concrete_specs": lockfile_as_dict["concrete_specs"]}
+                    )
+                    concrete_hash_seen.add(concrete_spec)
+
+            if "include_concrete" in lockfile_as_dict.keys():
+                self.included_concrete_spec_data[env_path]["include_concrete"] = lockfile_as_dict[
+                    "include_concrete"
+                ]
+
+        self._read_lockfile_dict(self._to_lockfile_dict())
+        self.write()
+
     def destroy(self):
         """Remove this environment from Spack entirely."""
         shutil.rmtree(self.path)
@@ -1233,6 +1435,10 @@ def concretize(self, force=False, tests=False):
         for spec in set(self.concretized_user_specs) - set(self.user_specs):
             self.deconcretize(spec, concrete=False)
 
+        # If a combined env, check updated spec is in the linked envs
+        if self.included_concrete_envs:
+            self.include_concrete_envs()
+
         # Pick the right concretization strategy
         if self.unify == "when_possible":
             return self._concretize_together_where_possible(tests=tests)
@@ -1416,7 +1622,7 @@ def _concretize_separately(self, tests=False):
         # Ensure we don't try to bootstrap clingo in parallel
         if spack.config.get("config:concretizer", "clingo") == "clingo":
             with spack.bootstrap.ensure_bootstrap_configuration():
-                spack.bootstrap.ensure_core_dependencies()
+                spack.bootstrap.ensure_clingo_importable_or_raise()
 
         # Ensure all the indexes have been built or updated, since
         # otherwise the processes in the pool may timeout on waiting
@@ -1427,7 +1633,7 @@ def _concretize_separately(self, tests=False):
 
         # Ensure we have compilers in compilers.yaml to avoid that
         # processes try to write the config file in parallel
-        _ = spack.compilers.get_compiler_config(init_config=True)
+        _ = spack.compilers.get_compiler_config(spack.config.CONFIG, init_config=True)
 
         # Early return if there is nothing to do
         if len(args) == 0:
@@ -1705,8 +1911,14 @@ def _partition_roots_by_install_status(self):
         of per spec."""
         installed, uninstalled = [], []
         with spack.store.STORE.db.read_transaction():
-            for concretized_hash in self.concretized_order:
-                spec = self.specs_by_hash[concretized_hash]
+            for concretized_hash in self.all_concretized_orders():
+                if concretized_hash in self.specs_by_hash:
+                    spec = self.specs_by_hash[concretized_hash]
+                else:
+                    for env_path in self.included_specs_by_hash.keys():
+                        if concretized_hash in self.included_specs_by_hash[env_path]:
+                            spec = self.included_specs_by_hash[env_path][concretized_hash]
+                            break
                 if not spec.installed or (
                     spec.satisfies("dev_path=*") or spec.satisfies("^dev_path=*")
                 ):
@@ -1786,8 +1998,14 @@ def added_specs(self):
 
     def concretized_specs(self):
         """Tuples of (user spec, concrete spec) for all concrete specs."""
-        for s, h in zip(self.concretized_user_specs, self.concretized_order):
-            yield (s, self.specs_by_hash[h])
+        for s, h in zip(self.all_concretized_user_specs(), self.all_concretized_orders()):
+            if h in self.specs_by_hash:
+                yield (s, self.specs_by_hash[h])
+            else:
+                for env_path in self.included_specs_by_hash.keys():
+                    if h in self.included_specs_by_hash[env_path]:
+                        yield (s, self.included_specs_by_hash[env_path][h])
+                        break
 
     def concrete_roots(self):
         """Same as concretized_specs, except it returns the list of concrete
@@ -1916,8 +2134,7 @@ def _get_environment_specs(self, recurse_dependencies=True):
         If these specs appear under different user_specs, only one copy
         is added to the list returned.
         """
-        specs = [self.specs_by_hash[h] for h in self.concretized_order]
-
+        specs = [self.specs_by_hash[h] for h in self.all_concretized_orders()]
         if recurse_dependencies:
             specs.extend(
                 traverse.traverse_nodes(
@@ -1962,31 +2179,76 @@ def _to_lockfile_dict(self):
             "concrete_specs": concrete_specs,
         }
 
+        if self.included_concrete_envs:
+            data[included_concrete_name] = self.included_concrete_spec_data
+
         return data
 
     def _read_lockfile(self, file_or_json):
         """Read a lockfile from a file or from a raw string."""
         lockfile_dict = sjson.load(file_or_json)
         self._read_lockfile_dict(lockfile_dict)
-        return lockfile_dict["_meta"]["lockfile-version"]
+        return lockfile_dict
+
+    def set_included_concretized_user_specs(
+        self,
+        env_name: str,
+        env_info: Dict[str, Dict[str, Any]],
+        included_json_specs_by_hash: Dict[str, Dict[str, Any]],
+    ) -> Dict[str, Dict[str, Any]]:
+        """Sets all of the concretized user specs from included environments
+        to include those from nested included environments.
+
+        Args:
+           env_name: the name (technically the path) of the included environment
+           env_info: included concrete environment data
+           included_json_specs_by_hash: concrete spec data keyed by hash
+
+        Returns: updated specs_by_hash
+        """
+        self.included_concretized_order[env_name] = []
+        self.included_concretized_user_specs[env_name] = []
+
+        def add_specs(name, info, specs_by_hash):
+            # Add specs from the environment as well as any of its nested
+            # environments.
+            for root_info in info["roots"]:
+                self.included_concretized_order[name].append(root_info["hash"])
+                self.included_concretized_user_specs[name].append(Spec(root_info["spec"]))
+            if "concrete_specs" in info:
+                specs_by_hash.update(info["concrete_specs"])
+
+            if included_concrete_name in info:
+                for included_name, included_info in info[included_concrete_name].items():
+                    if included_name not in self.included_concretized_order:
+                        self.included_concretized_order[included_name] = []
+                        self.included_concretized_user_specs[included_name] = []
+                    add_specs(included_name, included_info, specs_by_hash)
+
+        add_specs(env_name, env_info, included_json_specs_by_hash)
+        return included_json_specs_by_hash
 
     def _read_lockfile_dict(self, d):
         """Read a lockfile dictionary into this environment."""
         self.specs_by_hash = {}
+        self.included_specs_by_hash = {}
+        self.included_concretized_user_specs = {}
+        self.included_concretized_order = {}
 
         roots = d["roots"]
         self.concretized_user_specs = [Spec(r["spec"]) for r in roots]
         self.concretized_order = [r["hash"] for r in roots]
         json_specs_by_hash = d["concrete_specs"]
+        included_json_specs_by_hash = {}
 
-        # Track specs by their lockfile key.  Currently spack uses the finest
-        # grained hash as the lockfile key, while older formats used the build
-        # hash or a previous incarnation of the DAG hash (one that did not
-        # include build deps or package hash).
-        specs_by_hash = {}
+        if included_concrete_name in d:
+            for env_name, env_info in d[included_concrete_name].items():
+                included_json_specs_by_hash.update(
+                    self.set_included_concretized_user_specs(
+                        env_name, env_info, included_json_specs_by_hash
+                    )
+                )
 
-        # Track specs by their DAG hash, allows handling DAG hash collisions
-        first_seen = {}
         current_lockfile_format = d["_meta"]["lockfile-version"]
         try:
             reader = READER_CLS[current_lockfile_format]
@@ -1999,6 +2261,39 @@ def _read_lockfile_dict(self, d):
                 msg += " You need to use a newer Spack version."
             raise SpackEnvironmentError(msg)
 
+        first_seen, self.concretized_order = self.filter_specs(
+            reader, json_specs_by_hash, self.concretized_order
+        )
+
+        for spec_dag_hash in self.concretized_order:
+            self.specs_by_hash[spec_dag_hash] = first_seen[spec_dag_hash]
+
+        if any(self.included_concretized_order.values()):
+            first_seen = {}
+
+            for env_name, concretized_order in self.included_concretized_order.items():
+                filtered_spec, self.included_concretized_order[env_name] = self.filter_specs(
+                    reader, included_json_specs_by_hash, concretized_order
+                )
+                first_seen.update(filtered_spec)
+
+            for env_path, spec_hashes in self.included_concretized_order.items():
+                self.included_specs_by_hash[env_path] = {}
+                for spec_dag_hash in spec_hashes:
+                    self.included_specs_by_hash[env_path].update(
+                        {spec_dag_hash: first_seen[spec_dag_hash]}
+                    )
+
+    def filter_specs(self, reader, json_specs_by_hash, order_concretized):
+        # Track specs by their lockfile key.  Currently spack uses the finest
+        # grained hash as the lockfile key, while older formats used the build
+        # hash or a previous incarnation of the DAG hash (one that did not
+        # include build deps or package hash).
+        specs_by_hash = {}
+
+        # Track specs by their DAG hash, allows handling DAG hash collisions
+        first_seen = {}
+
         # First pass: Put each spec in the map ignoring dependencies
         for lockfile_key, node_dict in json_specs_by_hash.items():
             spec = reader.from_node_dict(node_dict)
@@ -2021,7 +2316,8 @@ def _read_lockfile_dict(self, d):
         # keep.  This is only required as long as we support older lockfile
         # formats where the mapping from DAG hash to lockfile key is possibly
         # one-to-many.
-        for lockfile_key in self.concretized_order:
+
+        for lockfile_key in order_concretized:
             for s in specs_by_hash[lockfile_key].traverse():
                 if s.dag_hash() not in first_seen:
                     first_seen[s.dag_hash()] = s
@@ -2029,12 +2325,10 @@ def _read_lockfile_dict(self, d):
         # Now make sure concretized_order and our internal specs dict
         # contains the keys used by modern spack (i.e. the dag_hash
         # that includes build deps and package hash).
-        self.concretized_order = [
-            specs_by_hash[h_key].dag_hash() for h_key in self.concretized_order
-        ]
 
-        for spec_dag_hash in self.concretized_order:
-            self.specs_by_hash[spec_dag_hash] = first_seen[spec_dag_hash]
+        order_concretized = [specs_by_hash[h_key].dag_hash() for h_key in order_concretized]
+
+        return first_seen, order_concretized
 
     def write(self, regenerate: bool = True) -> None:
         """Writes an in-memory environment to its location on disk.
@@ -2047,7 +2341,7 @@ def write(self, regenerate: bool = True) -> None:
             regenerate: regenerate views and run post-write hooks as well as writing if True.
         """
         self.manifest_uptodate_or_warn()
-        if self.specs_by_hash:
+        if self.specs_by_hash or self.included_concrete_envs:
             self.ensure_env_directory_exists(dot_env=True)
             self.update_environment_repository()
             self.manifest.flush()
@@ -2463,6 +2757,10 @@ def __init__(self, manifest_dir: Union[pathlib.Path, str]) -> None:
         self.scope_name = f"env:{environment_name(self.manifest_dir)}"
         self.config_stage_dir = os.path.join(env_subdir_path(manifest_dir), "config")
 
+        #: Configuration scopes associated with this environment. Note that these are not
+        #: invalidated by a re-read of the manifest file.
+        self._config_scopes: Optional[List[spack.config.ConfigScope]] = None
+
         if not self.manifest_file.exists():
             msg = f"cannot find '{manifest_name}' in {self.manifest_dir}"
             raise SpackEnvironmentError(msg)
@@ -2542,6 +2840,19 @@ def override_user_spec(self, user_spec: str, idx: int) -> None:
             raise SpackEnvironmentError(msg) from e
         self.changed = True
 
+    def set_include_concrete(self, include_concrete: List[str]) -> None:
+        """Sets the included concrete environments in the manifest to the value(s) passed as input.
+
+        Args:
+            include_concrete: list of already existing concrete environments to include
+        """
+        self.pristine_configuration[included_concrete_name] = []
+
+        for env_path in include_concrete:
+            self.pristine_configuration[included_concrete_name].append(env_path)
+
+        self.changed = True
+
     def add_definition(self, user_spec: str, list_name: str) -> None:
         """Appends a user spec to the first active definition matching the name passed as argument.
 
@@ -2725,54 +3036,56 @@ def included_config_scopes(self) -> List[spack.config.ConfigScope]:
         for i, config_path in enumerate(reversed(includes)):
             # allow paths to contain spack config/environment variables, etc.
             config_path = substitute_path_variables(config_path)
-
             include_url = urllib.parse.urlparse(config_path)
 
-            # Transform file:// URLs to direct includes.
-            if include_url.scheme == "file":
-                config_path = urllib.request.url2pathname(include_url.path)
+            # If scheme is not valid, config_path is not a url
+            # of a type Spack is generally aware
+            if spack.util.url.validate_scheme(include_url.scheme):
+                # Transform file:// URLs to direct includes.
+                if include_url.scheme == "file":
+                    config_path = urllib.request.url2pathname(include_url.path)
 
-            # Any other URL should be fetched.
-            elif include_url.scheme in ("http", "https", "ftp"):
-                # Stage any remote configuration file(s)
-                staged_configs = (
-                    os.listdir(self.config_stage_dir)
-                    if os.path.exists(self.config_stage_dir)
-                    else []
-                )
-                remote_path = urllib.request.url2pathname(include_url.path)
-                basename = os.path.basename(remote_path)
-                if basename in staged_configs:
-                    # Do NOT re-stage configuration files over existing
-                    # ones with the same name since there is a risk of
-                    # losing changes (e.g., from 'spack config update').
-                    tty.warn(
-                        "Will not re-stage configuration from {0} to avoid "
-                        "losing changes to the already staged file of the "
-                        "same name.".format(remote_path)
+                # Any other URL should be fetched.
+                elif include_url.scheme in ("http", "https", "ftp"):
+                    # Stage any remote configuration file(s)
+                    staged_configs = (
+                        os.listdir(self.config_stage_dir)
+                        if os.path.exists(self.config_stage_dir)
+                        else []
                     )
-
-                    # Recognize the configuration stage directory
-                    # is flattened to ensure a single copy of each
-                    # configuration file.
-                    config_path = self.config_stage_dir
-                    if basename.endswith(".yaml"):
-                        config_path = os.path.join(config_path, basename)
-                else:
-                    staged_path = spack.config.fetch_remote_configs(
-                        config_path, str(self.config_stage_dir), skip_existing=True
-                    )
-                    if not staged_path:
-                        raise SpackEnvironmentError(
-                            "Unable to fetch remote configuration {0}".format(config_path)
+                    remote_path = urllib.request.url2pathname(include_url.path)
+                    basename = os.path.basename(remote_path)
+                    if basename in staged_configs:
+                        # Do NOT re-stage configuration files over existing
+                        # ones with the same name since there is a risk of
+                        # losing changes (e.g., from 'spack config update').
+                        tty.warn(
+                            "Will not re-stage configuration from {0} to avoid "
+                            "losing changes to the already staged file of the "
+                            "same name.".format(remote_path)
                         )
-                    config_path = staged_path
 
-            elif include_url.scheme:
-                raise ValueError(
-                    f"Unsupported URL scheme ({include_url.scheme}) for "
-                    f"environment include: {config_path}"
-                )
+                        # Recognize the configuration stage directory
+                        # is flattened to ensure a single copy of each
+                        # configuration file.
+                        config_path = self.config_stage_dir
+                        if basename.endswith(".yaml"):
+                            config_path = os.path.join(config_path, basename)
+                    else:
+                        staged_path = spack.config.fetch_remote_configs(
+                            config_path, str(self.config_stage_dir), skip_existing=True
+                        )
+                        if not staged_path:
+                            raise SpackEnvironmentError(
+                                "Unable to fetch remote configuration {0}".format(config_path)
+                            )
+                        config_path = staged_path
+
+                elif include_url.scheme:
+                    raise ValueError(
+                        f"Unsupported URL scheme ({include_url.scheme}) for "
+                        f"environment include: {config_path}"
+                    )
 
             # treat relative paths as relative to the environment
             if not os.path.isabs(config_path):
@@ -2808,16 +3121,19 @@ def included_config_scopes(self) -> List[spack.config.ConfigScope]:
 
     @property
     def env_config_scopes(self) -> List[spack.config.ConfigScope]:
-        """A list of all configuration scopes for the environment manifest.
-
-        Returns:  All configuration scopes associated with the environment
-        """
-        config_name = self.scope_name
-        env_scope = spack.config.SingleFileScope(
-            config_name, str(self.manifest_file), spack.schema.env.schema, [TOP_LEVEL_KEY]
-        )
-
-        return check_disallowed_env_config_mods(self.included_config_scopes + [env_scope])
+        """A list of all configuration scopes for the environment manifest. On the first call this
+        instantiates all the scopes, on subsequent calls it returns the cached list."""
+        if self._config_scopes is not None:
+            return self._config_scopes
+        scopes: List[spack.config.ConfigScope] = [
+            *self.included_config_scopes,
+            spack.config.SingleFileScope(
+                self.scope_name, str(self.manifest_file), spack.schema.env.schema, [TOP_LEVEL_KEY]
+            ),
+        ]
+        ensure_no_disallowed_env_config_mods(scopes)
+        self._config_scopes = scopes
+        return scopes
 
     def prepare_config_scope(self) -> None:
         """Add the manifest's scopes to the global configuration search path."""

lib/spack/spack/filesystem_view.py

@@ -662,9 +662,6 @@ def add_specs(self, *specs: spack.spec.Spec) -> None:
             return
 
         # Drop externals
-        for s in specs:
-            if s.external:
-                tty.warn("Skipping external package: " + s.short_spec)
         specs = [s for s in specs if not s.external]
 
         self._sanity_check_view_projection(specs)

lib/spack/spack/hooks/autopush.py

@@ -0,0 +1,31 @@
+# Copyright 2013-2024 Lawrence Livermore National Security, LLC and other
+# Spack Project Developers. See the top-level COPYRIGHT file for details.
+#
+# SPDX-License-Identifier: (Apache-2.0 OR MIT)
+
+import llnl.util.tty as tty
+
+import spack.binary_distribution as bindist
+import spack.mirror
+
+
+def post_install(spec, explicit):
+    # Push package to all buildcaches with autopush==True
+
+    # Do nothing if spec is an external package
+    if spec.external:
+        return
+
+    # Do nothing if package was not installed from source
+    pkg = spec.package
+    if pkg.installed_from_binary_cache:
+        return
+
+    # Push the package to all autopush mirrors
+    for mirror in spack.mirror.MirrorCollection(binary=True, autopush=True).values():
+        bindist.push_or_raise(
+            spec,
+            mirror.push_url,
+            bindist.PushOptions(force=True, regenerate_index=False, unsigned=not mirror.signed),
+        )
+        tty.msg(f"{spec.name}: Pushed to build cache: '{mirror.name}'")

lib/spack/spack/hooks/windows_runtime_linkage.py

@@ -0,0 +1,8 @@
+# Copyright 2013-2024 Lawrence Livermore National Security, LLC and other
+# Spack Project Developers. See the top-level COPYRIGHT file for details.
+#
+# SPDX-License-Identifier: (Apache-2.0 OR MIT)
+
+
+def post_install(spec, explicit=None):
+    spec.package.windows_establish_runtime_linkage()

lib/spack/spack/installer.py

@@ -119,7 +119,7 @@ def __init__(self, pkg_count: int):
         self.pkg_ids: Set[str] = set()
 
     def next_pkg(self, pkg: "spack.package_base.PackageBase"):
-        pkg_id = package_id(pkg)
+        pkg_id = package_id(pkg.spec)
 
         if pkg_id not in self.pkg_ids:
             self.pkg_num += 1
@@ -221,12 +221,12 @@ def _handle_external_and_upstream(pkg: "spack.package_base.PackageBase", explici
     # consists in module file generation and registration in the DB.
     if pkg.spec.external:
         _process_external_package(pkg, explicit)
-        _print_installed_pkg(f"{pkg.prefix} (external {package_id(pkg)})")
+        _print_installed_pkg(f"{pkg.prefix} (external {package_id(pkg.spec)})")
         return True
 
     if pkg.spec.installed_upstream:
         tty.verbose(
-            f"{package_id(pkg)} is installed in an upstream Spack instance at "
+            f"{package_id(pkg.spec)} is installed in an upstream Spack instance at "
             f"{pkg.spec.prefix}"
         )
         _print_installed_pkg(pkg.prefix)
@@ -403,7 +403,7 @@ def _install_from_cache(
         return False
     t.stop()
 
-    pkg_id = package_id(pkg)
+    pkg_id = package_id(pkg.spec)
     tty.debug(f"Successfully extracted {pkg_id} from binary cache")
 
     _write_timer_json(pkg, t, True)
@@ -484,10 +484,14 @@ def _process_binary_cache_tarball(
         if download_result is None:
             return False
 
-    tty.msg(f"Extracting {package_id(pkg)} from binary cache")
+    tty.msg(f"Extracting {package_id(pkg.spec)} from binary cache")
 
     with timer.measure("install"), spack.util.path.filter_padding():
         binary_distribution.extract_tarball(pkg.spec, download_result, force=False, timer=timer)
+        pkg.windows_establish_runtime_linkage()
+
+        if hasattr(pkg, "_post_buildcache_install_hook"):
+            pkg._post_buildcache_install_hook()
 
         pkg.installed_from_binary_cache = True
         spack.store.STORE.db.add(pkg.spec, spack.store.STORE.layout, explicit=explicit)
@@ -513,7 +517,7 @@ def _try_install_from_binary_cache(
     if not spack.mirror.MirrorCollection(binary=True):
         return False
 
-    tty.debug(f"Searching for binary cache of {package_id(pkg)}")
+    tty.debug(f"Searching for binary cache of {package_id(pkg.spec)}")
 
     with timer.measure("search"):
         matches = binary_distribution.get_mirrors_for_spec(pkg.spec, index_only=True)
@@ -610,7 +614,7 @@ def get_dependent_ids(spec: "spack.spec.Spec") -> List[str]:
 
     Returns: list of package ids
     """
-    return [package_id(d.package) for d in spec.dependents()]
+    return [package_id(d) for d in spec.dependents()]
 
 
 def install_msg(name: str, pid: int, install_status: InstallStatus) -> str:
@@ -720,7 +724,7 @@ def log(pkg: "spack.package_base.PackageBase") -> None:
     dump_packages(pkg.spec, packages_dir)
 
 
-def package_id(pkg: "spack.package_base.PackageBase") -> str:
+def package_id(spec: "spack.spec.Spec") -> str:
     """A "unique" package identifier for installation purposes
 
     The identifier is used to track build tasks, locks, install, and
@@ -732,10 +736,10 @@ def package_id(pkg: "spack.package_base.PackageBase") -> str:
     Args:
         pkg: the package from which the identifier is derived
     """
-    if not pkg.spec.concrete:
+    if not spec.concrete:
         raise ValueError("Cannot provide a unique, readable id when the spec is not concretized.")
 
-    return f"{pkg.name}-{pkg.version}-{pkg.spec.dag_hash()}"
+    return f"{spec.name}-{spec.version}-{spec.dag_hash()}"
 
 
 class BuildRequest:
@@ -765,7 +769,7 @@ def __init__(self, pkg: "spack.package_base.PackageBase", install_args: dict):
         self.pkg.last_phase = install_args.pop("stop_at", None)  # type: ignore[attr-defined]
 
         # Cache the package id for convenience
-        self.pkg_id = package_id(pkg)
+        self.pkg_id = package_id(pkg.spec)
 
         # Save off the original install arguments plus standard defaults
         # since they apply to the requested package *and* dependencies.
@@ -780,9 +784,9 @@ def __init__(self, pkg: "spack.package_base.PackageBase", install_args: dict):
         # are not able to return full dependents for all packages across
         # environment specs.
         self.dependencies = set(
-            package_id(d.package)
+            package_id(d)
             for d in self.pkg.spec.dependencies(deptype=self.get_depflags(self.pkg))
-            if package_id(d.package) != self.pkg_id
+            if package_id(d) != self.pkg_id
         )
 
     def __repr__(self) -> str:
@@ -832,7 +836,7 @@ def get_depflags(self, pkg: "spack.package_base.PackageBase") -> int:
         depflag = dt.LINK | dt.RUN
         include_build_deps = self.install_args.get("include_build_deps")
 
-        if self.pkg_id == package_id(pkg):
+        if self.pkg_id == package_id(pkg.spec):
             cache_only = self.install_args.get("package_cache_only")
         else:
             cache_only = self.install_args.get("dependencies_cache_only")
@@ -927,7 +931,7 @@ def __init__(
             raise ValueError(f"{self.pkg.name} must have a concrete spec")
 
         # The "unique" identifier for the task's package
-        self.pkg_id = package_id(self.pkg)
+        self.pkg_id = package_id(self.pkg.spec)
 
         # The explicit build request associated with the package
         if not isinstance(request, BuildRequest):
@@ -965,9 +969,9 @@ def __init__(
         # if use traverse for transitive dependencies, then must remove
         # transitive dependents on failure.
         self.dependencies = set(
-            package_id(d.package)
+            package_id(d)
             for d in self.pkg.spec.dependencies(deptype=self.request.get_depflags(self.pkg))
-            if package_id(d.package) != self.pkg_id
+            if package_id(d) != self.pkg_id
         )
 
         # Handle bootstrapped compiler
@@ -976,14 +980,18 @@ def __init__(
         # a dependency of the build task. Here we add it to self.dependencies
         compiler_spec = self.pkg.spec.compiler
         arch_spec = self.pkg.spec.architecture
-        if not spack.compilers.compilers_for_spec(compiler_spec, arch_spec=arch_spec):
+        strict = spack.concretize.Concretizer().check_for_compiler_existence
+        if (
+            not spack.compilers.compilers_for_spec(compiler_spec, arch_spec=arch_spec)
+            and not strict
+        ):
             # The compiler is in the queue, identify it as dependency
             dep = spack.compilers.pkg_spec_for_compiler(compiler_spec)
             dep.constrain(f"platform={str(arch_spec.platform)}")
             dep.constrain(f"os={str(arch_spec.os)}")
             dep.constrain(f"target={arch_spec.target.microarchitecture.family.name}:")
             dep.concretize()
-            dep_id = package_id(dep.package)
+            dep_id = package_id(dep)
             self.dependencies.add(dep_id)
 
         # List of uninstalled dependencies, which is used to establish
@@ -1194,7 +1202,7 @@ def _add_bootstrap_compilers(
         """
         packages = _packages_needed_to_bootstrap_compiler(compiler, architecture, pkgs)
         for comp_pkg, is_compiler in packages:
-            pkgid = package_id(comp_pkg)
+            pkgid = package_id(comp_pkg.spec)
             if pkgid not in self.build_tasks:
                 self._add_init_task(comp_pkg, request, is_compiler, all_deps)
             elif is_compiler:
@@ -1241,7 +1249,7 @@ def _add_init_task(
         """
         task = BuildTask(pkg, request, is_compiler, 0, 0, STATUS_ADDED, self.installed)
         for dep_id in task.dependencies:
-            all_deps[dep_id].add(package_id(pkg))
+            all_deps[dep_id].add(package_id(pkg.spec))
 
         self._push_task(task)
 
@@ -1276,7 +1284,7 @@ def _check_deps_status(self, request: BuildRequest) -> None:
         err = "Cannot proceed with {0}: {1}"
         for dep in request.traverse_dependencies():
             dep_pkg = dep.package
-            dep_id = package_id(dep_pkg)
+            dep_id = package_id(dep)
 
             # Check for failure since a prefix lock is not required
             if spack.store.STORE.failure_tracker.has_failed(dep):
@@ -1409,7 +1417,7 @@ def _cleanup_task(self, pkg: "spack.package_base.PackageBase") -> None:
         Args:
             pkg: the package being installed
         """
-        self._remove_task(package_id(pkg))
+        self._remove_task(package_id(pkg.spec))
 
         # Ensure we have a read lock to prevent others from uninstalling the
         # spec during our installation.
@@ -1423,7 +1431,7 @@ def _ensure_install_ready(self, pkg: "spack.package_base.PackageBase") -> None:
         Args:
             pkg: the package being locally installed
         """
-        pkg_id = package_id(pkg)
+        pkg_id = package_id(pkg.spec)
         pre = f"{pkg_id} cannot be installed locally:"
 
         # External packages cannot be installed locally.
@@ -1465,7 +1473,7 @@ def _ensure_locked(
             "write",
         ], f'"{lock_type}" is not a supported package management lock type'
 
-        pkg_id = package_id(pkg)
+        pkg_id = package_id(pkg.spec)
         ltype, lock = self.locks.get(pkg_id, (lock_type, None))
         if lock and ltype == lock_type:
             return ltype, lock
@@ -1601,7 +1609,7 @@ def _add_tasks(self, request: BuildRequest, all_deps):
             for dep in request.traverse_dependencies():
                 dep_pkg = dep.package
 
-                dep_id = package_id(dep_pkg)
+                dep_id = package_id(dep)
                 if dep_id not in self.build_tasks:
                     self._add_init_task(dep_pkg, request, False, all_deps)
 
@@ -1691,10 +1699,6 @@ def _install_task(self, task: BuildTask, install_status: InstallStatus) -> None:
             spack.package_base.PackageBase._verbose = spack.build_environment.start_build_process(
                 pkg, build_process, install_args
             )
-            # Currently this is how RPATH-like behavior is achieved on Windows, after install
-            # establish runtime linkage via Windows Runtime link object
-            # Note: this is a no-op on non Windows platforms
-            pkg.windows_establish_runtime_linkage()
             # Note: PARENT of the build process adds the new package to
             # the database, so that we don't need to re-read from file.
             spack.store.STORE.db.add(pkg.spec, spack.store.STORE.layout, explicit=explicit)
@@ -1913,7 +1917,7 @@ def _flag_installed(
             dependent_ids: set of the package's dependent ids, or None if the dependent ids are
                 limited to those maintained in the package (dependency DAG)
         """
-        pkg_id = package_id(pkg)
+        pkg_id = package_id(pkg.spec)
 
         if pkg_id in self.installed:
             # Already determined the package has been installed
@@ -2309,7 +2313,7 @@ def __init__(self, pkg: "spack.package_base.PackageBase", install_args: dict):
 
         # info/debug information
         self.pre = _log_prefix(pkg.name)
-        self.pkg_id = package_id(pkg)
+        self.pkg_id = package_id(pkg.spec)
 
     def run(self) -> bool:
         """Main entry point from ``build_process`` to kick off install in child."""