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Author SHA1 Message Date
Todd Gamblin
0d092d671f add spack.util.url.git_url_parse() method and tests
Add a method to parse git URLs (but not arbitrary file paths). This method parses git
URLs into scheme, username, hostname, port, and path. It will raise an error if its
argument is not proper git URL.

- [x] add `spack.util.url.git_url_parse` method
- [x] add 31 tests for `git_url_parse`
2021-09-13 21:46:52 -07:00
7853 changed files with 44683 additions and 127995 deletions

View File

@@ -16,29 +16,19 @@ body:
attributes:
label: Steps to reproduce the issue
description: |
Fill in the console output from the exact spec you are trying to build.
value: |
Fill in the exact spec you are trying to build and the relevant part of the error message
placeholder: |
```console
$ spack spec -I <spec>
$ spack install <spec>
...
```
- type: textarea
id: error
attributes:
label: Error message
description: |
Please post the error message from spack inside the `<details>` tag below:
value: |
<details><summary>Error message</summary><pre>
...
</pre></details>
validations:
required: true
- type: textarea
id: information
attributes:
label: Information on your system
description: Please include the output of `spack debug report`.
description: Please include the output of `spack debug report`
validations:
required: true
- type: markdown

View File

@@ -1,8 +1,6 @@
name: Bootstrapping
on:
# This Workflow can be triggered manually
workflow_dispatch:
pull_request:
branches:
- develop
@@ -21,7 +19,7 @@ on:
jobs:
fedora-clingo-sources:
fedora-sources:
runs-on: ubuntu-latest
container: "fedora:latest"
steps:
@@ -31,7 +29,7 @@ jobs:
bzip2 curl file gcc-c++ gcc gcc-gfortran git gnupg2 gzip \
make patch unzip which xz python3 python3-devel tree \
cmake bison bison-devel libstdc++-static
- uses: actions/checkout@a12a3943b4bdde767164f792f33f40b04645d846 # @v2
- uses: actions/checkout@v2
- name: Setup repo and non-root user
run: |
git --version
@@ -43,12 +41,12 @@ jobs:
shell: runuser -u spack-test -- bash {0}
run: |
source share/spack/setup-env.sh
spack bootstrap untrust github-actions-v0.2
spack bootstrap untrust github-actions
spack external find cmake bison
spack -d solve zlib
tree ~/.spack/bootstrap/store/
ubuntu-clingo-sources:
ubuntu-sources:
runs-on: ubuntu-latest
container: "ubuntu:latest"
steps:
@@ -61,15 +59,7 @@ jobs:
bzip2 curl file g++ gcc gfortran git gnupg2 gzip \
make patch unzip xz-utils python3 python3-dev tree \
cmake bison
- name: Work around CVE-2022-24765
run: |
# Apparently Ubuntu patched git v2.25.1 with a security patch that introduces
# a breaking behavior. See:
# - https://github.blog/2022-04-12-git-security-vulnerability-announced/
# - https://github.com/actions/checkout/issues/760
# - http://changelogs.ubuntu.com/changelogs/pool/main/g/git/git_2.25.1-1ubuntu3.3/changelog
git config --global --add safe.directory /__w/spack/spack
- uses: actions/checkout@a12a3943b4bdde767164f792f33f40b04645d846 # @v2
- uses: actions/checkout@v2
- name: Setup repo and non-root user
run: |
git --version
@@ -81,60 +71,23 @@ jobs:
shell: runuser -u spack-test -- bash {0}
run: |
source share/spack/setup-env.sh
spack bootstrap untrust github-actions-v0.2
spack bootstrap untrust github-actions
spack external find cmake bison
spack -d solve zlib
tree ~/.spack/bootstrap/store/
ubuntu-clingo-binaries-and-patchelf:
opensuse-sources:
runs-on: ubuntu-latest
container: "ubuntu:latest"
steps:
- name: Install dependencies
env:
DEBIAN_FRONTEND: noninteractive
run: |
apt-get update -y && apt-get upgrade -y
apt-get install -y \
bzip2 curl file g++ gcc gfortran git gnupg2 gzip \
make patch unzip xz-utils python3 python3-dev tree
- name: Work around CVE-2022-24765
run: |
# Apparently Ubuntu patched git v2.25.1 with a security patch that introduces
# a breaking behavior. See:
# - https://github.blog/2022-04-12-git-security-vulnerability-announced/
# - https://github.com/actions/checkout/issues/760
# - http://changelogs.ubuntu.com/changelogs/pool/main/g/git/git_2.25.1-1ubuntu3.3/changelog
git config --global --add safe.directory /__w/spack/spack
- uses: actions/checkout@a12a3943b4bdde767164f792f33f40b04645d846 # @v2
- name: Setup repo and non-root user
run: |
git --version
git fetch --unshallow
. .github/workflows/setup_git.sh
useradd -m spack-test
chown -R spack-test .
- name: Bootstrap clingo
shell: runuser -u spack-test -- bash {0}
run: |
source share/spack/setup-env.sh
spack -d solve zlib
tree ~/.spack/bootstrap/store/
opensuse-clingo-sources:
runs-on: ubuntu-latest
container: "opensuse/leap:latest"
container: "opensuse/tumbleweed:latest"
steps:
- name: Install dependencies
run: |
# Harden CI by applying the workaround described here: https://www.suse.com/support/kb/doc/?id=000019505
zypper update -y || zypper update -y
zypper update -y
zypper install -y \
bzip2 curl file gcc-c++ gcc gcc-fortran tar git gpg2 gzip \
make patch unzip which xz python3 python3-devel tree \
cmake bison
- uses: actions/checkout@a12a3943b4bdde767164f792f33f40b04645d846 # @v2
- uses: actions/checkout@v2
- name: Setup repo and non-root user
run: |
git --version
@@ -143,23 +96,23 @@ jobs:
- name: Bootstrap clingo
run: |
source share/spack/setup-env.sh
spack bootstrap untrust github-actions-v0.2
spack bootstrap untrust github-actions
spack external find cmake bison
spack -d solve zlib
tree ~/.spack/bootstrap/store/
macos-clingo-sources:
macos-sources:
runs-on: macos-latest
steps:
- name: Install dependencies
run: |
brew install cmake bison@2.7 tree
- uses: actions/checkout@a12a3943b4bdde767164f792f33f40b04645d846 # @v2
- uses: actions/checkout@v2
- name: Bootstrap clingo
run: |
source share/spack/setup-env.sh
export PATH=/usr/local/opt/bison@2.7/bin:$PATH
spack bootstrap untrust github-actions-v0.2
spack bootstrap untrust github-actions
spack external find --not-buildable cmake bison
spack -d solve zlib
tree ~/.spack/bootstrap/store/
@@ -168,13 +121,13 @@ jobs:
runs-on: macos-latest
strategy:
matrix:
python-version: ['3.5', '3.6', '3.7', '3.8', '3.9', '3.10']
python-version: ['3.5', '3.6', '3.7', '3.8', '3.9']
steps:
- name: Install dependencies
run: |
brew install tree
- uses: actions/checkout@a12a3943b4bdde767164f792f33f40b04645d846 # @v2
- uses: actions/setup-python@98f2ad02fd48d057ee3b4d4f66525b231c3e52b6 # @v2
- uses: actions/checkout@v2
- uses: actions/setup-python@v2
with:
python-version: ${{ matrix.python-version }}
- name: Bootstrap clingo
@@ -184,14 +137,15 @@ jobs:
spack -d solve zlib
tree ~/.spack/bootstrap/store/
ubuntu-clingo-binaries:
runs-on: ubuntu-latest
strategy:
matrix:
python-version: ['2.7', '3.5', '3.6', '3.7', '3.8', '3.9', '3.10']
python-version: ['2.7', '3.5', '3.6', '3.7', '3.8', '3.9']
steps:
- uses: actions/checkout@a12a3943b4bdde767164f792f33f40b04645d846 # @v2
- uses: actions/setup-python@98f2ad02fd48d057ee3b4d4f66525b231c3e52b6 # @v2
- uses: actions/checkout@v2
- uses: actions/setup-python@v2
with:
python-version: ${{ matrix.python-version }}
- name: Setup repo and non-root user
@@ -205,110 +159,3 @@ jobs:
spack bootstrap untrust spack-install
spack -d solve zlib
tree ~/.spack/bootstrap/store/
ubuntu-gnupg-binaries:
runs-on: ubuntu-latest
container: "ubuntu:latest"
steps:
- name: Install dependencies
env:
DEBIAN_FRONTEND: noninteractive
run: |
apt-get update -y && apt-get upgrade -y
apt-get install -y \
bzip2 curl file g++ gcc patchelf gfortran git gzip \
make patch unzip xz-utils python3 python3-dev tree
- name: Work around CVE-2022-24765
run: |
# Apparently Ubuntu patched git v2.25.1 with a security patch that introduces
# a breaking behavior. See:
# - https://github.blog/2022-04-12-git-security-vulnerability-announced/
# - https://github.com/actions/checkout/issues/760
# - http://changelogs.ubuntu.com/changelogs/pool/main/g/git/git_2.25.1-1ubuntu3.3/changelog
git config --global --add safe.directory /__w/spack/spack
- uses: actions/checkout@a12a3943b4bdde767164f792f33f40b04645d846
- name: Setup repo and non-root user
run: |
git --version
git fetch --unshallow
. .github/workflows/setup_git.sh
useradd -m spack-test
chown -R spack-test .
- name: Bootstrap GnuPG
shell: runuser -u spack-test -- bash {0}
run: |
source share/spack/setup-env.sh
spack bootstrap untrust spack-install
spack -d gpg list
tree ~/.spack/bootstrap/store/
ubuntu-gnupg-sources:
runs-on: ubuntu-latest
container: "ubuntu:latest"
steps:
- name: Install dependencies
env:
DEBIAN_FRONTEND: noninteractive
run: |
apt-get update -y && apt-get upgrade -y
apt-get install -y \
bzip2 curl file g++ gcc patchelf gfortran git gzip \
make patch unzip xz-utils python3 python3-dev tree \
gawk
- name: Work around CVE-2022-24765
run: |
# Apparently Ubuntu patched git v2.25.1 with a security patch that introduces
# a breaking behavior. See:
# - https://github.blog/2022-04-12-git-security-vulnerability-announced/
# - https://github.com/actions/checkout/issues/760
# - http://changelogs.ubuntu.com/changelogs/pool/main/g/git/git_2.25.1-1ubuntu3.3/changelog
git config --global --add safe.directory /__w/spack/spack
- uses: actions/checkout@a12a3943b4bdde767164f792f33f40b04645d846
- name: Setup repo and non-root user
run: |
git --version
git fetch --unshallow
. .github/workflows/setup_git.sh
useradd -m spack-test
chown -R spack-test .
- name: Bootstrap GnuPG
shell: runuser -u spack-test -- bash {0}
run: |
source share/spack/setup-env.sh
spack solve zlib
spack bootstrap untrust github-actions-v0.2
spack -d gpg list
tree ~/.spack/bootstrap/store/
macos-gnupg-binaries:
runs-on: macos-latest
steps:
- name: Install dependencies
run: |
brew install tree
# Remove GnuPG since we want to bootstrap it
sudo rm -rf /usr/local/bin/gpg
- uses: actions/checkout@a12a3943b4bdde767164f792f33f40b04645d846
- name: Bootstrap GnuPG
run: |
source share/spack/setup-env.sh
spack bootstrap untrust spack-install
spack -d gpg list
tree ~/.spack/bootstrap/store/
macos-gnupg-sources:
runs-on: macos-latest
steps:
- name: Install dependencies
run: |
brew install gawk tree
# Remove GnuPG since we want to bootstrap it
sudo rm -rf /usr/local/bin/gpg
- uses: actions/checkout@a12a3943b4bdde767164f792f33f40b04645d846
- name: Bootstrap GnuPG
run: |
source share/spack/setup-env.sh
spack solve zlib
spack bootstrap untrust github-actions-v0.2
spack -d gpg list
tree ~/.spack/bootstrap/store/

View File

@@ -1,29 +1,15 @@
name: Containers
name: Build & Deploy Docker Containers
on:
# This Workflow can be triggered manually
workflow_dispatch:
# Build new Spack develop containers nightly.
schedule:
- cron: '34 0 * * *'
# Run on pull requests that modify this file
pull_request:
branches:
- develop
paths:
- '.github/workflows/build-containers.yml'
- 'share/spack/docker/*'
- 'share/templates/container/*'
- 'lib/spack/spack/container/*'
# Let's also build & tag Spack containers on releases.
release:
types: [published]
jobs:
deploy-images:
runs-on: ubuntu-latest
permissions:
packages: write
runs-on: ubuntu-latest
strategy:
# Even if one container fails to build we still want the others
# to continue their builds.
@@ -31,25 +17,19 @@ jobs:
# A matrix of Dockerfile paths, associated tags, and which architectures
# they support.
matrix:
# Meaning of the various items in the matrix list
# 0: Container name (e.g. ubuntu-bionic)
# 1: Platforms to build for
# 2: Base image (e.g. ubuntu:18.04)
dockerfile: [[amazon-linux, 'linux/amd64,linux/arm64', 'amazonlinux:2'],
[centos7, 'linux/amd64,linux/arm64,linux/ppc64le', 'centos:7'],
[centos-stream, 'linux/amd64,linux/arm64,linux/ppc64le', 'centos:stream'],
[leap15, 'linux/amd64,linux/arm64,linux/ppc64le', 'opensuse/leap:15'],
[ubuntu-bionic, 'linux/amd64,linux/arm64,linux/ppc64le', 'ubuntu:18.04'],
[ubuntu-focal, 'linux/amd64,linux/arm64,linux/ppc64le', 'ubuntu:20.04'],
[ubuntu-jammy, 'linux/amd64,linux/arm64,linux/ppc64le', 'ubuntu:22.04']]
dockerfile: [[amazon-linux, amazonlinux-2.dockerfile, 'linux/amd64,linux/arm64'],
[centos7, centos-7.dockerfile, 'linux/amd64,linux/arm64'],
[leap15, leap-15.dockerfile, 'linux/amd64,linux/arm64'],
[ubuntu-xenial, ubuntu-1604.dockerfile, 'linux/amd64,linux/arm64'],
[ubuntu-bionic, ubuntu-1804.dockerfile, 'linux/amd64,linux/arm64']]
name: Build ${{ matrix.dockerfile[0] }}
steps:
- name: Checkout
uses: actions/checkout@a12a3943b4bdde767164f792f33f40b04645d846 # @v2
uses: actions/checkout@v2
- name: Set Container Tag Normal (Nightly)
run: |
container="${{ matrix.dockerfile[0] }}:latest"
container="ghcr.io/spack/${{ matrix.dockerfile[0]}}:latest"
echo "container=${container}" >> $GITHUB_ENV
echo "versioned=${container}" >> $GITHUB_ENV
@@ -57,59 +37,36 @@ jobs:
- name: Set Container Tag on Release
if: github.event_name == 'release'
run: |
versioned="${{matrix.dockerfile[0]}}:${GITHUB_REF##*/}"
versioned="ghcr.io/spack/${{matrix.dockerfile[0]}}:${GITHUB_REF##*/}"
echo "versioned=${versioned}" >> $GITHUB_ENV
- name: Generate the Dockerfile
env:
SPACK_YAML_OS: "${{ matrix.dockerfile[2] }}"
- name: Check ${{ matrix.dockerfile[1] }} Exists
run: |
.github/workflows/generate_spack_yaml_containerize.sh
. share/spack/setup-env.sh
mkdir -p dockerfiles/${{ matrix.dockerfile[0] }}
spack containerize --last-stage=bootstrap | tee dockerfiles/${{ matrix.dockerfile[0] }}/Dockerfile
printf "Preparing to build ${{ env.container }} from dockerfiles/${{ matrix.dockerfile[0] }}/Dockerfile"
if [ ! -f "dockerfiles/${{ matrix.dockerfile[0] }}/Dockerfile" ]; then
printf "dockerfiles/${{ matrix.dockerfile[0] }}/Dockerfile does not exist"
printf "Preparing to build ${{ env.container }} from ${{ matrix.dockerfile[1] }}"
if [ ! -f "share/spack/docker/${{ matrix.dockerfile[1]}}" ]; then
printf "Dockerfile ${{ matrix.dockerfile[0]}} does not exist"
exit 1;
fi
- name: Upload Dockerfile
uses: actions/upload-artifact@6673cd052c4cd6fcf4b4e6e60ea986c889389535
with:
name: dockerfiles
path: dockerfiles
- name: Set up QEMU
uses: docker/setup-qemu-action@27d0a4f181a40b142cce983c5393082c365d1480 # @v1
- name: Set up Docker Buildx
uses: docker/setup-buildx-action@94ab11c41e45d028884a99163086648e898eed25 # @v1
- name: Log in to GitHub Container Registry
uses: docker/login-action@dd4fa0671be5250ee6f50aedf4cb05514abda2c7 # @v1
uses: docker/login-action@v1
with:
registry: ghcr.io
username: ${{ github.actor }}
password: ${{ secrets.GITHUB_TOKEN }}
- name: Log in to DockerHub
if: ${{ github.event_name != 'pull_request' }}
uses: docker/login-action@dd4fa0671be5250ee6f50aedf4cb05514abda2c7 # @v1
with:
username: ${{ secrets.DOCKERHUB_USERNAME }}
password: ${{ secrets.DOCKERHUB_TOKEN }}
- name: Set up QEMU
uses: docker/setup-qemu-action@v1
- name: Build & Deploy ${{ matrix.dockerfile[0] }}
uses: docker/build-push-action@ac9327eae2b366085ac7f6a2d02df8aa8ead720a # @v2
- name: Set up Docker Buildx
uses: docker/setup-buildx-action@v1
- name: Build & Deploy ${{ matrix.dockerfile[1] }}
uses: docker/build-push-action@v2
with:
context: dockerfiles/${{ matrix.dockerfile[0] }}
platforms: ${{ matrix.dockerfile[1] }}
push: ${{ github.event_name != 'pull_request' }}
cache-from: type=gha
cache-to: type=gha,mode=max
file: share/spack/docker/${{matrix.dockerfile[1]}}
platforms: ${{ matrix.dockerfile[2] }}
push: true
tags: |
spack/${{ env.container }}
spack/${{ env.versioned }}
ghcr.io/spack/${{ env.container }}
ghcr.io/spack/${{ env.versioned }}
${{ env.container }}
${{ env.versioned }}

View File

@@ -1,7 +0,0 @@
$ proc = Start-Process ${{ env.spack_installer }}\spack.exe "/install /quiet" -Passthru
$handle = $proc.Handle # cache proc.Handle
$proc.WaitForExit();
if ($proc.ExitCode -ne 0) {
Write-Warning "$_ exited with status code $($proc.ExitCode)"
}

View File

@@ -1,9 +0,0 @@
#!/bin/bash
(echo "spack:" \
&& echo " specs: []" \
&& echo " container:" \
&& echo " format: docker" \
&& echo " images:" \
&& echo " os: \"${SPACK_YAML_OS}\"" \
&& echo " spack:" \
&& echo " ref: ${GITHUB_REF}") > spack.yaml

View File

@@ -2,7 +2,19 @@
. share/spack/setup-env.sh
echo -e "config:\n build_jobs: 2" > etc/spack/config.yaml
spack config add "packages:all:target:[x86_64]"
spack compiler find
# TODO: remove this explicit setting once apple-clang detection is fixed
cat <<EOF > etc/spack/compilers.yaml
compilers:
- compiler:
spec: apple-clang@11.0.3
paths:
cc: /usr/bin/clang
cxx: /usr/bin/clang++
f77: /usr/local/bin/gfortran-9
fc: /usr/local/bin/gfortran-9
modules: []
operating_system: catalina
target: x86_64
EOF
spack compiler info apple-clang
spack debug report
spack solve zlib

View File

@@ -24,23 +24,23 @@ jobs:
name: gcc with clang
runs-on: macos-latest
steps:
- uses: actions/checkout@a12a3943b4bdde767164f792f33f40b04645d846 # @v2
- uses: actions/setup-python@98f2ad02fd48d057ee3b4d4f66525b231c3e52b6 # @v2
- uses: actions/checkout@v2
- uses: actions/setup-python@v2
with:
python-version: 3.9
- name: spack install
run: |
. .github/workflows/install_spack.sh
# 9.2.0 is the latest version on which we apply homebrew patch
spack install -v --fail-fast gcc@11.2.0 %apple-clang
spack install -v --fail-fast gcc@9.2.0 %apple-clang
install_jupyter_clang:
name: jupyter
runs-on: macos-latest
timeout-minutes: 700
steps:
- uses: actions/checkout@a12a3943b4bdde767164f792f33f40b04645d846 # @v2
- uses: actions/setup-python@98f2ad02fd48d057ee3b4d4f66525b231c3e52b6 # @v2
- uses: actions/checkout@v2
- uses: actions/setup-python@v2
with:
python-version: 3.9
- name: spack install
@@ -52,8 +52,8 @@ jobs:
name: scipy, mpl, pd
runs-on: macos-latest
steps:
- uses: actions/checkout@a12a3943b4bdde767164f792f33f40b04645d846 # @v2
- uses: actions/setup-python@98f2ad02fd48d057ee3b4d4f66525b231c3e52b6 # @v2
- uses: actions/checkout@v2
- uses: actions/setup-python@v2
with:
python-version: 3.9
- name: spack install
@@ -62,3 +62,17 @@ jobs:
spack install -v --fail-fast py-scipy %apple-clang
spack install -v --fail-fast py-matplotlib %apple-clang
spack install -v --fail-fast py-pandas %apple-clang
install_mpi4py_clang:
name: mpi4py, petsc4py
runs-on: macos-latest
steps:
- uses: actions/checkout@v2
- uses: actions/setup-python@v2
with:
python-version: 3.9
- name: spack install
run: |
. .github/workflows/install_spack.sh
spack install -v --fail-fast py-mpi4py %apple-clang
spack install -v --fail-fast py-petsc4py %apple-clang

View File

@@ -1,11 +0,0 @@
# (c) 2021 Lawrence Livermore National Laboratory
Set-Location spack
git config --global user.email "spack@example.com"
git config --global user.name "Test User"
if ($(git branch --show-current) -ne "develop")
{
git branch develop origin/develop
}

View File

@@ -1,8 +1,9 @@
#!/bin/bash -e
#!/usr/bin/env sh
git config --global user.email "spack@example.com"
git config --global user.name "Test User"
# create a local pr base branch
if [[ -n $GITHUB_BASE_REF ]]; then
git fetch origin "${GITHUB_BASE_REF}:${GITHUB_BASE_REF}"
# With fetch-depth: 0 we have a remote develop
# but not a local branch. Don't do this on develop
if [ "$(git branch --show-current)" != "develop" ]
then
git branch develop origin/develop
fi

View File

@@ -1,4 +0,0 @@
param ($systemFolder, $shortcut)
$start = [System.Environment]::GetFolderPath("$systemFolder")
Invoke-Item "$start\Programs\Spack\$shortcut"

View File

@@ -15,28 +15,28 @@ jobs:
validate:
runs-on: ubuntu-latest
steps:
- uses: actions/checkout@a12a3943b4bdde767164f792f33f40b04645d846 # @v2
- uses: actions/setup-python@98f2ad02fd48d057ee3b4d4f66525b231c3e52b6 # @v2
- uses: actions/checkout@v2
- uses: actions/setup-python@v2
with:
python-version: '3.10'
python-version: 3.9
- name: Install Python Packages
run: |
pip install --upgrade pip
pip install --upgrade vermin
- name: vermin (Spack's Core)
run: vermin --backport argparse --violations --backport typing -t=2.7- -t=3.5- -vvv lib/spack/spack/ lib/spack/llnl/ bin/
run: vermin --backport argparse --violations --backport typing -t=2.6- -t=3.5- -vvv lib/spack/spack/ lib/spack/llnl/ bin/
- name: vermin (Repositories)
run: vermin --backport argparse --violations --backport typing -t=2.7- -t=3.5- -vvv var/spack/repos
run: vermin --backport argparse --violations --backport typing -t=2.6- -t=3.5- -vvv var/spack/repos
# Run style checks on the files that have been changed
style:
runs-on: ubuntu-latest
steps:
- uses: actions/checkout@a12a3943b4bdde767164f792f33f40b04645d846 # @v2
- uses: actions/checkout@v2
with:
fetch-depth: 0
- uses: actions/setup-python@98f2ad02fd48d057ee3b4d4f66525b231c3e52b6 # @v2
- uses: actions/setup-python@v2
with:
python-version: '3.10'
python-version: 3.9
- name: Install Python packages
run: |
pip install --upgrade pip six setuptools types-six
@@ -48,6 +48,26 @@ jobs:
- name: Run style tests
run: |
share/spack/qa/run-style-tests
# Build the documentation
documentation:
runs-on: ubuntu-latest
steps:
- uses: actions/checkout@v2
- uses: actions/setup-python@v2
with:
python-version: 3.9
- name: Install System packages
run: |
sudo apt-get -y update
sudo apt-get install -y coreutils ninja-build graphviz
- name: Install Python packages
run: |
pip install --upgrade pip six setuptools
pip install --upgrade -r lib/spack/docs/requirements.txt
- name: Build documentation
run: |
share/spack/qa/run-doc-tests
# Check which files have been updated by the PR
changes:
runs-on: ubuntu-latest
@@ -57,12 +77,12 @@ jobs:
packages: ${{ steps.filter.outputs.packages }}
with_coverage: ${{ steps.coverage.outputs.with_coverage }}
steps:
- uses: actions/checkout@a12a3943b4bdde767164f792f33f40b04645d846 # @v2
- uses: actions/checkout@v2
if: ${{ github.event_name == 'push' }}
with:
fetch-depth: 0
# For pull requests it's not necessary to checkout the code
- uses: dorny/paths-filter@b2feaf19c27470162a626bd6fa8438ae5b263721
- uses: dorny/paths-filter@v2
id: filter
with:
# See https://github.com/dorny/paths-filter/issues/56 for the syntax used below
@@ -92,24 +112,17 @@ jobs:
# Run unit tests with different configurations on linux
unittests:
needs: [ validate, style, changes ]
needs: [ validate, style, documentation, changes ]
runs-on: ubuntu-latest
strategy:
matrix:
python-version: ['2.7', '3.5', '3.6', '3.7', '3.8', '3.9', '3.10']
concretizer: ['clingo']
include:
- python-version: 2.7
concretizer: original
- python-version: 3.6
concretizer: original
- python-version: 3.9
concretizer: original
python-version: [2.7, 3.5, 3.6, 3.7, 3.8, 3.9]
concretizer: ['original', 'clingo']
steps:
- uses: actions/checkout@a12a3943b4bdde767164f792f33f40b04645d846 # @v2
- uses: actions/checkout@v2
with:
fetch-depth: 0
- uses: actions/setup-python@98f2ad02fd48d057ee3b4d4f66525b231c3e52b6 # @v2
- uses: actions/setup-python@v2
with:
python-version: ${{ matrix.python-version }}
- name: Install System packages
@@ -121,16 +134,12 @@ jobs:
patchelf cmake bison libbison-dev kcov
- name: Install Python packages
run: |
pip install --upgrade pip six setuptools pytest codecov "coverage[toml]<=6.2"
pip install --upgrade pip six setuptools codecov coverage[toml]
# ensure style checks are not skipped in unit tests for python >= 3.6
# note that true/false (i.e., 1/0) are opposite in conditions in python and bash
if python -c 'import sys; sys.exit(not sys.version_info >= (3, 6))'; then
pip install --upgrade flake8 isort>=4.3.5 mypy>=0.900 black
fi
- name: Pin pathlib for Python 2.7
if: ${{ matrix.python-version == 2.7 }}
run: |
pip install -U pathlib2==2.3.6
- name: Setup git configuration
run: |
# Need this for the git tests to succeed.
@@ -162,21 +171,21 @@ jobs:
SPACK_TEST_SOLVER: ${{ matrix.concretizer }}
run: |
share/spack/qa/run-unit-tests
- uses: codecov/codecov-action@e3c560433a6cc60aec8812599b7844a7b4fa0d71 # @v2.1.0
- uses: codecov/codecov-action@v2.0.3
if: ${{ needs.changes.outputs.with_coverage == 'true' }}
with:
flags: unittests,linux,${{ matrix.concretizer }}
# Test shell integration
shell:
needs: [ validate, style, changes ]
needs: [ validate, style, documentation, changes ]
runs-on: ubuntu-latest
steps:
- uses: actions/checkout@a12a3943b4bdde767164f792f33f40b04645d846 # @v2
- uses: actions/checkout@v2
with:
fetch-depth: 0
- uses: actions/setup-python@98f2ad02fd48d057ee3b4d4f66525b231c3e52b6 # @v2
- uses: actions/setup-python@v2
with:
python-version: '3.10'
python-version: 3.9
- name: Install System packages
run: |
sudo apt-get -y update
@@ -184,7 +193,7 @@ jobs:
sudo apt-get install -y coreutils kcov csh zsh tcsh fish dash bash
- name: Install Python packages
run: |
pip install --upgrade pip six setuptools pytest codecov coverage[toml]==6.2
pip install --upgrade pip six setuptools codecov coverage[toml]
- name: Setup git configuration
run: |
# Need this for the git tests to succeed.
@@ -200,15 +209,44 @@ jobs:
COVERAGE: true
run: |
share/spack/qa/run-shell-tests
- uses: codecov/codecov-action@e3c560433a6cc60aec8812599b7844a7b4fa0d71 # @v2.1.0
- uses: codecov/codecov-action@v2.0.3
if: ${{ needs.changes.outputs.with_coverage == 'true' }}
with:
flags: shelltests,linux
# Test for Python2.6 run on Centos 6
centos6:
needs: [ validate, style, documentation, changes ]
runs-on: ubuntu-latest
container: spack/github-actions:centos6
steps:
- name: Run unit tests (full test-suite)
# The CentOS 6 container doesn't run with coverage, but
# under the same conditions it runs the full test suite
if: ${{ needs.changes.outputs.with_coverage == 'true' }}
env:
HOME: /home/spack-test
run: |
whoami && echo $HOME && cd $HOME
git clone https://github.com/spack/spack.git && cd spack
git fetch origin ${{ github.ref }}:test-branch
git checkout test-branch
share/spack/qa/run-unit-tests
- name: Run unit tests (only package tests)
if: ${{ needs.changes.outputs.with_coverage == 'false' }}
env:
HOME: /home/spack-test
ONLY_PACKAGES: true
run: |
whoami && echo $HOME && cd $HOME
git clone https://github.com/spack/spack.git && cd spack
git fetch origin ${{ github.ref }}:test-branch
git checkout test-branch
share/spack/qa/run-unit-tests
# Test RHEL8 UBI with platform Python. This job is run
# only on PRs modifying core Spack
rhel8-platform-python:
needs: [ validate, style, changes ]
needs: [ validate, style, documentation, changes ]
runs-on: ubuntu-latest
if: ${{ needs.changes.outputs.with_coverage == 'true' }}
container: registry.access.redhat.com/ubi8/ubi
@@ -218,7 +256,7 @@ jobs:
dnf install -y \
bzip2 curl file gcc-c++ gcc gcc-gfortran git gnupg2 gzip \
make patch tcl unzip which xz
- uses: actions/checkout@a12a3943b4bdde767164f792f33f40b04645d846 # @v2
- uses: actions/checkout@v2
- name: Setup repo and non-root user
run: |
git --version
@@ -230,19 +268,18 @@ jobs:
shell: runuser -u spack-test -- bash {0}
run: |
source share/spack/setup-env.sh
spack -d solve zlib
spack unit-test -k 'not cvs and not svn and not hg' -x --verbose
# Test for the clingo based solver (using clingo-cffi)
clingo-cffi:
needs: [ validate, style, changes ]
needs: [ validate, style, documentation, changes ]
runs-on: ubuntu-latest
steps:
- uses: actions/checkout@a12a3943b4bdde767164f792f33f40b04645d846 # @v2
- uses: actions/checkout@v2
with:
fetch-depth: 0
- uses: actions/setup-python@98f2ad02fd48d057ee3b4d4f66525b231c3e52b6 # @v2
- uses: actions/setup-python@v2
with:
python-version: '3.10'
python-version: 3.9
- name: Install System packages
run: |
sudo apt-get -y update
@@ -252,7 +289,7 @@ jobs:
patchelf kcov
- name: Install Python packages
run: |
pip install --upgrade pip six setuptools pytest codecov coverage[toml]==6.2 clingo
pip install --upgrade pip six setuptools codecov coverage[toml] clingo
- name: Setup git configuration
run: |
# Need this for the git tests to succeed.
@@ -274,28 +311,28 @@ jobs:
SPACK_TEST_SOLVER: clingo
run: |
share/spack/qa/run-unit-tests
- uses: codecov/codecov-action@e3c560433a6cc60aec8812599b7844a7b4fa0d71 # @v2.1.0
- uses: codecov/codecov-action@v2.0.3
if: ${{ needs.changes.outputs.with_coverage == 'true' }}
with:
flags: unittests,linux,clingo
# Run unit tests on MacOS
build:
needs: [ validate, style, changes ]
needs: [ validate, style, documentation, changes ]
runs-on: macos-latest
strategy:
matrix:
python-version: [3.8]
steps:
- uses: actions/checkout@a12a3943b4bdde767164f792f33f40b04645d846 # @v2
- uses: actions/checkout@v2
with:
fetch-depth: 0
- uses: actions/setup-python@98f2ad02fd48d057ee3b4d4f66525b231c3e52b6 # @v2
- uses: actions/setup-python@v2
with:
python-version: ${{ matrix.python-version }}
- name: Install Python packages
run: |
pip install --upgrade pip six setuptools
pip install --upgrade pytest codecov coverage[toml]==6.2
pip install --upgrade codecov coverage[toml]
- name: Setup Homebrew packages
run: |
brew install dash fish gcc gnupg2 kcov
@@ -320,37 +357,8 @@ jobs:
echo "ONLY PACKAGE RECIPES CHANGED [skipping coverage]"
$(which spack) unit-test -x -m "not maybeslow" -k "package_sanity"
fi
- uses: codecov/codecov-action@e3c560433a6cc60aec8812599b7844a7b4fa0d71 # @v2.1.0
- uses: codecov/codecov-action@v2.0.3
if: ${{ needs.changes.outputs.with_coverage == 'true' }}
with:
files: ./coverage.xml
flags: unittests,macos
# Run audits on all the packages in the built-in repository
package-audits:
needs: [ validate, style, changes ]
runs-on: ubuntu-latest
steps:
- uses: actions/checkout@a12a3943b4bdde767164f792f33f40b04645d846 # @v2
- uses: actions/setup-python@98f2ad02fd48d057ee3b4d4f66525b231c3e52b6 # @v2
with:
python-version: '3.10'
- name: Install Python packages
run: |
pip install --upgrade pip six setuptools pytest codecov coverage[toml]==6.2
- name: Package audits (with coverage)
if: ${{ needs.changes.outputs.with_coverage == 'true' }}
run: |
. share/spack/setup-env.sh
coverage run $(which spack) audit packages
coverage combine
coverage xml
- name: Package audits (wwithout coverage)
if: ${{ needs.changes.outputs.with_coverage == 'false' }}
run: |
. share/spack/setup-env.sh
$(which spack) audit packages
- uses: codecov/codecov-action@e3c560433a6cc60aec8812599b7844a7b4fa0d71 # @v2.1.0
if: ${{ needs.changes.outputs.with_coverage == 'true' }}
with:
flags: unittests,linux,audits

View File

@@ -1,188 +0,0 @@
name: windows tests
on:
push:
branches:
- develop
- releases/**
pull_request:
branches:
- develop
- releases/**
defaults:
run:
shell:
powershell Invoke-Expression -Command ".\share\spack\qa\windows_test_setup.ps1"; {0}
jobs:
validate:
runs-on: windows-latest
steps:
- uses: actions/checkout@v2
- uses: actions/setup-python@98f2ad02fd48d057ee3b4d4f66525b231c3e52b6
with:
python-version: 3.9
- name: Install Python Packages
run: |
python -m pip install --upgrade pip
python -m pip install --upgrade vermin
- name: vermin (Spack's Core)
run: vermin --backport argparse --backport typing -t='2.7-' -t='3.5-' -v spack/lib/spack/spack/ spack/lib/spack/llnl/ spack/bin/
- name: vermin (Repositories)
run: vermin --backport argparse --backport typing -t='2.7-' -t='3.5-' -v spack/var/spack/repos
# Run style checks on the files that have been changed
style:
runs-on: windows-latest
steps:
- uses: actions/checkout@v2
with:
fetch-depth: 0
- uses: actions/setup-python@98f2ad02fd48d057ee3b4d4f66525b231c3e52b6
with:
python-version: 3.9
- name: Install Python packages
run: |
python -m pip install --upgrade pip six setuptools flake8 isort>=4.3.5 mypy>=0.800 black pywin32 types-python-dateutil
- name: Create local develop
run: |
.\spack\.github\workflows\setup_git.ps1
- name: Run style tests
run: |
spack style
- name: Verify license headers
run: |
python spack\bin\spack license verify
unittest:
needs: [ validate, style ]
runs-on: windows-latest
steps:
- uses: actions/checkout@v2
with:
fetch-depth: 0
- uses: actions/setup-python@98f2ad02fd48d057ee3b4d4f66525b231c3e52b6
with:
python-version: 3.9
- name: Install Python packages
run: |
python -m pip install --upgrade pip six pywin32 setuptools codecov coverage
- name: Create local develop
run: |
.\spack\.github\workflows\setup_git.ps1
- name: Unit Test
run: |
echo F|xcopy .\spack\share\spack\qa\configuration\windows_config.yaml $env:USERPROFILE\.spack\windows\config.yaml
spack unit-test --verbose --ignore=lib/spack/spack/test/cmd
unittest-cmd:
needs: [ validate, style ]
runs-on: windows-latest
steps:
- uses: actions/checkout@v2
with:
fetch-depth: 0
- uses: actions/setup-python@98f2ad02fd48d057ee3b4d4f66525b231c3e52b6
with:
python-version: 3.9
- name: Install Python packages
run: |
python -m pip install --upgrade pip six pywin32 setuptools codecov coverage
- name: Create local develop
run: |
.\spack\.github\workflows\setup_git.ps1
- name: Command Unit Test
run: |
echo F|xcopy .\spack\share\spack\qa\configuration\windows_config.yaml $env:USERPROFILE\.spack\windows\config.yaml
spack unit-test lib/spack/spack/test/cmd --verbose
buildtest:
needs: [ validate, style ]
runs-on: windows-latest
steps:
- uses: actions/checkout@v2
with:
fetch-depth: 0
- uses: actions/setup-python@98f2ad02fd48d057ee3b4d4f66525b231c3e52b6
with:
python-version: 3.9
- name: Install Python packages
run: |
python -m pip install --upgrade pip six pywin32 setuptools codecov coverage
- name: Build Test
run: |
spack compiler find
echo F|xcopy .\spack\share\spack\qa\configuration\windows_config.yaml $env:USERPROFILE\.spack\windows\config.yaml
spack external find cmake
spack external find ninja
spack install abseil-cpp
generate-installer-test:
needs: [ validate, style ]
runs-on: windows-latest
steps:
- name: Disable Windows Symlinks
run: |
git config --global core.symlinks false
shell:
powershell
- uses: actions/checkout@v2
with:
fetch-depth: 0
- uses: actions/setup-python@98f2ad02fd48d057ee3b4d4f66525b231c3e52b6
with:
python-version: 3.9
- name: Install Python packages
run: |
python -m pip install --upgrade pip six pywin32 setuptools codecov coverage
- name: Add Light and Candle to Path
run: |
$env:WIX >> $GITHUB_PATH
- name: Run Installer
run: |
.\spack\share\spack\qa\setup_spack.ps1
spack make-installer -s spack -g SILENT pkg
echo "installer_root=$((pwd).Path)" | Out-File -FilePath $Env:GITHUB_ENV -Encoding utf8 -Append
env:
ProgressPreference: SilentlyContinue
- uses: actions/upload-artifact@v3
with:
name: Windows Spack Installer Bundle
path: ${{ env.installer_root }}\pkg\Spack.exe
- uses: actions/upload-artifact@v3
with:
name: Windows Spack Installer
path: ${{ env.installer_root}}\pkg\Spack.msi
execute-installer:
needs: generate-installer-test
runs-on: windows-latest
defaults:
run:
shell: pwsh
steps:
- uses: actions/setup-python@98f2ad02fd48d057ee3b4d4f66525b231c3e52b6
with:
python-version: 3.9
- name: Install Python packages
run: |
python -m pip install --upgrade pip six pywin32 setuptools codecov coverage
- name: Setup installer directory
run: |
mkdir -p spack_installer
echo "spack_installer=$((pwd).Path)\spack_installer" | Out-File -FilePath $Env:GITHUB_ENV -Encoding utf8 -Append
- uses: actions/download-artifact@v3
with:
name: Windows Spack Installer Bundle
path: ${{ env.spack_installer }}
- name: Execute Bundled Installer
run: |
$proc = Start-Process ${{ env.spack_installer }}\spack.exe "/install /quiet" -Passthru
$handle = $proc.Handle # cache proc.Handle
$proc.WaitForExit();
$LASTEXITCODE
env:
ProgressPreference: SilentlyContinue
- uses: actions/download-artifact@v3
with:
name: Windows Spack Installer
path: ${{ env.spack_installer }}
- name: Execute MSI
run: |
$proc = Start-Process ${{ env.spack_installer }}\spack.msi "/quiet" -Passthru
$handle = $proc.Handle # cache proc.Handle
$proc.WaitForExit();
$LASTEXITCODE

5
.gitignore vendored
View File

@@ -132,11 +132,11 @@ celerybeat.pid
.env
.venv
env/
!/lib/spack/env
venv/
ENV/
env.bak/
venv.bak/
!/lib/spack/env
# Spyder project settings
.spyderproject
@@ -210,9 +210,6 @@ tramp
/eshell/history
/eshell/lastdir
# zsh byte-compiled files
*.zwc
# elpa packages
/elpa/

View File

@@ -2,7 +2,6 @@ version: 2
sphinx:
configuration: lib/spack/docs/conf.py
fail_on_warning: true
python:
version: 3.7

View File

@@ -1,228 +1,3 @@
# v0.17.2 (2022-04-13)
### Spack bugfixes
* Fix --reuse with upstreams set in an environment (#29680)
* config add: fix parsing of validator error to infer type from oneOf (#29475)
* Fix spack -C command_line_scope used in conjunction with other flags (#28418)
* Use Spec.constrain to construct spec lists for stacks (#28783)
* Fix bug occurring when searching for inherited patches in packages (#29574)
* Fixed a few bugs when manipulating symlinks (#28318, #29515, #29636)
* Fixed a few minor bugs affecting command prompt, terminal title and argument completion (#28279, #28278, #28939, #29405, #29070, #29402)
* Fixed a few bugs affecting the spack ci command (#29518, #29419)
* Fix handling of Intel compiler environment (#29439)
* Fix a few edge cases when reindexing the DB (#28764)
* Remove "Known issues" from documentation (#29664)
* Other miscellaneous bugfixes (0b72e070583fc5bcd016f5adc8a84c99f2b7805f, #28403, #29261)
# v0.17.1 (2021-12-23)
### Spack Bugfixes
* Allow locks to work under high contention (#27846)
* Improve errors messages from clingo (#27707 #27970)
* Respect package permissions for sbang (#25764)
* Fix --enable-locks behavior (#24675)
* Fix log-format reporter ignoring install errors (#25961)
* Fix overloaded argparse keys (#27379)
* Allow style commands to run with targets other than "develop" (#27472)
* Log lock messages to debug level, instead of verbose level (#27408)
* Handle invalid unicode while logging (#21447)
* spack audit: fix API calls to variants (#27713)
* Provide meaningful message for empty environment installs (#28031)
* Added opensuse leap containers to spack containerize (#27837)
* Revert "patches: make re-applied patches idempotent" (#27625)
* MANPATH can use system defaults (#21682)
* Add "setdefault" subcommand to `spack module tcl` (#14686)
* Regenerate views when specs already installed (#28113)
### Package bugfixes
* Fix external package detection for OpenMPI (#27255)
* Update the UPC++ package to 2021.9.0 (#26996)
* Added py-vermin v1.3.2 (#28072)
# v0.17.0 (2021-11-05)
`v0.17.0` is a major feature release.
## Major features in this release
1. **New concretizer is now default**
The new concretizer introduced as an experimental feature in `v0.16.0`
is now the default (#25502). The new concretizer is based on the
[clingo](https://github.com/potassco/clingo) logic programming system,
and it enables us to do much higher quality and faster dependency solving
The old concretizer is still available via the `concretizer: original`
setting, but it is deprecated and will be removed in `v0.18.0`.
2. **Binary Bootstrapping**
To make it easier to use the new concretizer and binary packages,
Spack now bootstraps `clingo` and `GnuPG` from public binaries. If it
is not able to bootstrap them from binaries, it installs them from
source code. With these changes, you should still be able to clone Spack
and start using it almost immediately. (#21446, #22354, #22489, #22606,
#22720, #22720, #23677, #23946, #24003, #25138, #25607, #25964, #26029,
#26399, #26599).
3. **Reuse existing packages (experimental)**
The most wanted feature from our
[2020 user survey](https://spack.io/spack-user-survey-2020/) and
the most wanted Spack feature of all time (#25310). `spack install`,
`spack spec`, and `spack concretize` now have a `--reuse` option, which
causes Spack to minimize the number of rebuilds it does. The `--reuse`
option will try to find existing installations and binary packages locally
and in registered mirrors, and will prefer to use them over building new
versions. This will allow users to build from source *far* less than in
prior versions of Spack. This feature will continue to be improved, with
configuration options and better CLI expected in `v0.17.1`. It will become
the *default* concretization mode in `v0.18.0`.
4. **Better error messages**
We have improved the error messages generated by the new concretizer by
using *unsatisfiable cores*. Spack will now print a summary of the types
of constraints that were violated to make a spec unsatisfiable (#26719).
5. **Conditional variants**
Variants can now have a `when="<spec>"` clause, allowing them to be
conditional based on the version or other attributes of a package (#24858).
6. **Git commit versions**
In an environment and on the command-line, you can now provide a full,
40-character git commit as a version for any package with a top-level
`git` URL. e.g., `spack install hdf5@45bb27f58240a8da7ebb4efc821a1a964d7712a8`.
Spack will compare the commit to tags in the git repository to understand
what versions it is ahead of or behind.
7. **Override local config and cache directories**
You can now set `SPACK_DISABLE_LOCAL_CONFIG` to disable the `~/.spack` and
`/etc/spack` configuration scopes. `SPACK_USER_CACHE_PATH` allows you to
move caches out of `~/.spack`, as well (#27022, #26735). This addresses
common problems where users could not isolate CI environments from local
configuration.
8. **Improvements to Spack Containerize**
For added reproducibility, you can now pin the Spack version used by
`spack containerize` (#21910). The container build will only build
with the Spack version pinned at build recipe creation instead of the
latest Spack version.
9. **New commands for dealing with tags**
The `spack tags` command allows you to list tags on packages (#26136), and you
can list tests and filter tags with `spack test list` (#26842).
## Other new features of note
* Copy and relocate environment views as stand-alone installations (#24832)
* `spack diff` command can diff two installed specs (#22283, #25169)
* `spack -c <config>` can set one-off config parameters on CLI (#22251)
* `spack load --list` is an alias for `spack find --loaded` (#27184)
* `spack gpg` can export private key with `--secret` (#22557)
* `spack style` automatically bootstraps dependencies (#24819)
* `spack style --fix` automatically invokes `isort` (#24071)
* build dependencies can be installed from build caches with `--include-build-deps` (#19955)
* `spack audit` command for checking package constraints (#23053)
* Spack can now fetch from `CVS` repositories (yep, really) (#23212)
* `spack monitor` lets you upload analysis about installations to a
[spack monitor server](https://github.com/spack/spack-monitor) (#23804, #24321,
#23777, #25928))
* `spack python --path` shows which `python` Spack is using (#22006)
* `spack env activate --temp` can create temporary environments (#25388)
* `--preferred` and `--latest` options for `spack checksum` (#25830)
* `cc` is now pure posix and runs on Alpine (#26259)
* `SPACK_PYTHON` environment variable sets which `python` spack uses (#21222)
* `SPACK_SKIP_MODULES` lets you source `setup-env.sh` faster if you don't need modules (#24545)
## Major internal refactors
* `spec.yaml` files are now `spec.json`, yielding a large speed improvement (#22845)
* Splicing allows Spack specs to store mixed build provenance (#20262)
* More extensive hooks API for installations (#21930)
* New internal API for getting the active environment (#25439)
## Performance Improvements
* Parallelize separate concretization in environments; Previously 55 min E4S solve
now takes 2.5 min (#26264)
* Drastically improve YamlFilesystemView file removal performance via batching (#24355)
* Speed up spec comparison (#21618)
* Speed up environment activation (#25633)
## Archspec improvements
* support for new generic `x86_64_v2`, `x86_64_v3`, `x86_64_v4` targets
(see [archspec#31](https://github.com/archspec/archspec-json/pull/31))
* `spack arch --generic` lets you get the best generic architecture for
your node (#27061)
* added support for aocc (#20124), `arm` compiler on `graviton2` (#24904)
and on `a64fx` (#24524),
## Infrastructure, buildcaches, and services
* Add support for GCS Bucket Mirrors (#26382)
* Add `spackbot` to help package maintainers with notifications. See
[spack.github.io/spackbot](https://spack.github.io/spackbot/)
* Reproducible pipeline builds with `spack ci rebuild` (#22887)
* Removed redundant concretizations from GitLab pipeline generation (#26622)
* Spack CI no longer generates jobs for unbuilt specs (#20435)
* Every pull request pipeline has its own buildcache (#25529)
* `--no-add` installs only specified specs and only if already present in… (#22657)
* Add environment-aware `spack buildcache sync` command (#25470)
* Binary cache installation speedups and improvements (#19690, #20768)
## Deprecations and Removals
* `spack setup` was deprecated in v0.16.0, and has now been removed.
Use `spack develop` and `spack dev-build`.
* Remove unused `--dependencies` flag from `spack load` (#25731)
* Remove stubs for `spack module [refresh|find|rm|loads]`, all of which
were deprecated in 2018.
## Notable Bugfixes
* Deactivate previous env before activating new one (#25409)
* Many fixes to error codes from `spack install` (#21319, #27012, #25314)
* config add: infer type based on JSON schema validation errors (#27035)
* `spack config edit` now works even if `spack.yaml` is broken (#24689)
## Packages
* Allow non-empty version ranges like `1.1.0:1.1` (#26402)
* Remove `.99`'s from many version ranges (#26422)
* Python: use platform-specific site packages dir (#25998)
* `CachedCMakePackage` for using *.cmake initial config files (#19316)
* `lua-lang` allows swapping `lua` and `luajit` (#22492)
* Better support for `ld.gold` and `ld.lld` (#25626)
* build times are now stored as metadata in `$prefix/.spack` (#21179)
* post-install tests can be reused in smoke tests (#20298)
* Packages can use `pypi` attribute to infer `homepage`/`url`/`list_url` (#17587)
* Use gnuconfig package for `config.guess` file replacement (#26035)
* patches: make re-applied patches idempotent (#26784)
## Spack community stats
* 5969 total packages, 920 new since `v0.16.0`
* 358 new Python packages, 175 new R packages
* 513 people contributed to this release
* 490 committers to packages
* 105 committers to core
* Lots of GPU updates:
* ~77 CUDA-related commits
* ~66 AMD-related updates
* ~27 OneAPI-related commits
* 30 commits from AMD toolchain support
* `spack test` usage in packages is increasing
* 1669 packages with tests (mostly generic python tests)
* 93 packages with their own tests
# v0.16.3 (2021-09-21)
* clang/llvm: fix version detection (#19978)
* Fix use of quotes in Python build system (#22279)
* Cray: fix extracting paths from module files (#23472)
* Use AWS CloudFront for source mirror (#23978)
* Ensure all roots of an installed environment are marked explicit in db (#24277)
* Fix fetching for Python 3.8 and 3.9 (#24686)
* locks: only open lockfiles once instead of for every lock held (#24794)
* Remove the EOL centos:6 docker image
# v0.16.2 (2021-05-22)
* Major performance improvement for `spack load` and other commands. (#23661)

View File

@@ -1,58 +0,0 @@
# If you are referencing Spack in a publication, please cite the SC'15 paper
# described here.
#
# Here's the raw citation:
#
# Todd Gamblin, Matthew P. LeGendre, Michael R. Collette, Gregory L. Lee,
# Adam Moody, Bronis R. de Supinski, and W. Scott Futral.
# The Spack Package Manager: Bringing Order to HPC Software Chaos.
# In Supercomputing 2015 (SC15), Austin, Texas, November 15-20 2015. LLNL-CONF-669890.
#
# Or, in BibTeX:
#
# @inproceedings{Gamblin_The_Spack_Package_2015,
# address = {Austin, Texas, USA},
# author = {Gamblin, Todd and LeGendre, Matthew and
# Collette, Michael R. and Lee, Gregory L. and
# Moody, Adam and de Supinski, Bronis R. and Futral, Scott},
# doi = {10.1145/2807591.2807623},
# month = {November 15-20},
# note = {LLNL-CONF-669890},
# series = {Supercomputing 2015 (SC15)},
# title = {{The Spack Package Manager: Bringing Order to HPC Software Chaos}},
# url = {https://github.com/spack/spack},
# year = {2015}
# }
#
# And here's the CITATION.cff format:
#
cff-version: 1.2.0
message: "If you are referencing Spack in a publication, please cite the paper below."
preferred-citation:
type: conference-paper
doi: "10.1145/2807591.2807623"
url: "https://github.com/spack/spack"
authors:
- family-names: "Gamblin"
given-names: "Todd"
- family-names: "LeGendre"
given-names: "Matthew"
- family-names: "Collette"
given-names: "Michael R."
- family-names: "Lee"
given-names: "Gregory L."
- family-names: "Moody"
given-names: "Adam"
- family-names: "de Supinski"
given-names: "Bronis R."
- family-names: "Futral"
given-names: "Scott"
title: "The Spack Package Manager: Bringing Order to HPC Software Chaos"
conference:
name: "Supercomputing 2015 (SC15)"
city: "Austin"
region: "Texas"
country: "USA"
month: November 15-20
year: 2015
notes: LLNL-CONF-669890

View File

@@ -34,22 +34,10 @@ includes the sbang tool directly in bin/sbang. These packages are covered
by various permissive licenses. A summary listing follows. See the
license included with each package for full details.
PackageName: altgraph
PackageHomePage: https://altgraph.readthedocs.io/en/latest/index.html
PackageLicenseDeclared: MIT
PackageName: argparse
PackageHomePage: https://pypi.python.org/pypi/argparse
PackageLicenseDeclared: Python-2.0
PackageName: astunparse
PackageHomePage: https://github.com/simonpercivall/astunparse
PackageLicenseDeclared: Python-2.0
PackageName: attrs
PackageHomePage: https://github.com/python-attrs/attrs
PackageLicenseDeclared: MIT
PackageName: ctest_log_parser
PackageHomePage: https://github.com/Kitware/CMake
PackageLicenseDeclared: BSD-3-Clause
@@ -58,8 +46,8 @@ PackageName: distro
PackageHomePage: https://pypi.python.org/pypi/distro
PackageLicenseDeclared: Apache-2.0
PackageName: functools32
PackageHomePage: https://github.com/MiCHiLU/python-functools32
PackageName: functools
PackageHomePage: https://github.com/python/cpython/blob/2.7/Lib/functools.py
PackageLicenseDeclared: Python-2.0
PackageName: jinja2
@@ -70,10 +58,6 @@ PackageName: jsonschema
PackageHomePage: https://pypi.python.org/pypi/jsonschema
PackageLicenseDeclared: MIT
PackageName: macholib
PackageHomePage: https://macholib.readthedocs.io/en/latest/index.html
PackageLicenseDeclared: MIT
PackageName: markupsafe
PackageHomePage: https://pypi.python.org/pypi/MarkupSafe
PackageLicenseDeclared: BSD-3-Clause
@@ -86,10 +70,6 @@ PackageName: py
PackageHomePage: https://pypi.python.org/pypi/py
PackageLicenseDeclared: MIT
PackageName: pyrsistent
PackageHomePage: http://github.com/tobgu/pyrsistent
PackageLicenseDeclared: MIT
PackageName: pytest
PackageHomePage: https://pypi.python.org/pypi/pytest
PackageLicenseDeclared: MIT
@@ -105,3 +85,11 @@ PackageLicenseDeclared: Apache-2.0 OR MIT
PackageName: six
PackageHomePage: https://pypi.python.org/pypi/six
PackageLicenseDeclared: MIT
PackageName: macholib
PackageHomePage: https://macholib.readthedocs.io/en/latest/index.html
PackageLicenseDeclared: MIT
PackageName: altgraph
PackageHomePage: https://altgraph.readthedocs.io/en/latest/index.html
PackageLicenseDeclared: MIT

View File

@@ -1,6 +1,6 @@
MIT License
Copyright (c) 2013-2022 LLNS, LLC and other Spack Project Developers.
Copyright (c) 2013-2020 LLNS, LLC and other Spack Project Developers.
Permission is hereby granted, free of charge, to any person obtaining a copy
of this software and associated documentation files (the "Software"), to deal

View File

@@ -4,7 +4,6 @@
[![Bootstrapping](https://github.com/spack/spack/actions/workflows/bootstrap.yml/badge.svg)](https://github.com/spack/spack/actions/workflows/bootstrap.yml)
[![macOS Builds (nightly)](https://github.com/spack/spack/workflows/macOS%20builds%20nightly/badge.svg?branch=develop)](https://github.com/spack/spack/actions?query=workflow%3A%22macOS+builds+nightly%22)
[![codecov](https://codecov.io/gh/spack/spack/branch/develop/graph/badge.svg)](https://codecov.io/gh/spack/spack)
[![Containers](https://github.com/spack/spack/actions/workflows/build-containers.yml/badge.svg)](https://github.com/spack/spack/actions/workflows/build-containers.yml)
[![Read the Docs](https://readthedocs.org/projects/spack/badge/?version=latest)](https://spack.readthedocs.io)
[![Slack](https://slack.spack.io/badge.svg)](https://slack.spack.io)
@@ -27,7 +26,7 @@ for examples and highlights.
To install spack and your first package, make sure you have Python.
Then:
$ git clone -c feature.manyFiles=true https://github.com/spack/spack.git
$ git clone https://github.com/spack/spack.git
$ cd spack/bin
$ ./spack install zlib
@@ -125,9 +124,6 @@ If you are referencing Spack in a publication, please cite the following paper:
[**The Spack Package Manager: Bringing Order to HPC Software Chaos**](https://www.computer.org/csdl/proceedings/sc/2015/3723/00/2807623.pdf).
In *Supercomputing 2015 (SC15)*, Austin, Texas, November 15-20 2015. LLNL-CONF-669890.
On GitHub, you can copy this citation in APA or BibTeX format via the "Cite this repository"
button. Or, see the comments in `CITATION.cff` for the raw BibTeX.
License
----------------

View File

@@ -1,25 +0,0 @@
# Security Policy
## Supported Versions
We provide security updates for the following releases.
For more on Spack's release structure, see
[`README.md`](https://github.com/spack/spack#releases).
| Version | Supported |
| ------- | ------------------ |
| develop | :white_check_mark: |
| 0.17.x | :white_check_mark: |
| 0.16.x | :white_check_mark: |
## Reporting a Vulnerability
To report a vulnerability or other security
issue, email maintainers@spack.io.
You can expect to hear back within two days.
If your security issue is accepted, we will do
our best to release a fix within a week. If
fixing the issue will take longer than this,
we will discuss timeline options with you.

View File

@@ -1,20 +0,0 @@
# Copyright 2013-2021 Lawrence Livermore National Security, LLC and other
# Spack Project Developers. See the top-level COPYRIGHT file for details.
#
# SPDX-License-Identifier: (Apache-2.0 OR MIT)
import subprocess
import sys
def getpywin():
try:
import win32con # noqa
except ImportError:
subprocess.check_call(
[sys.executable, "-m", "pip", "-q", "install", "--upgrade", "pip"])
subprocess.check_call(
[sys.executable, "-m", "pip", "-q", "install", "pywin32"])
if __name__ == '__main__':
getpywin()

View File

@@ -1,7 +1,7 @@
#!/bin/sh
# -*- python -*-
#
# Copyright 2013-2022 Lawrence Livermore National Security, LLC and other
# Copyright 2013-2021 Lawrence Livermore National Security, LLC and other
# Spack Project Developers. See the top-level COPYRIGHT file for details.
#
# SPDX-License-Identifier: (Apache-2.0 OR MIT)
@@ -33,11 +33,11 @@ import sys
min_python3 = (3, 5)
if sys.version_info[:2] < (2, 7) or (
if sys.version_info[:2] < (2, 6) or (
sys.version_info[:2] >= (3, 0) and sys.version_info[:2] < min_python3
):
v_info = sys.version_info[:3]
msg = "Spack requires Python 2.7 or %d.%d or higher " % min_python3
msg = "Spack requires Python 2.6, 2.7 or %d.%d or higher " % min_python3
msg += "You are running spack with Python %d.%d.%d." % v_info
sys.exit(msg)
@@ -54,6 +54,8 @@ spack_external_libs = os.path.join(spack_lib_path, "external")
if sys.version_info[:2] <= (2, 7):
sys.path.insert(0, os.path.join(spack_external_libs, "py2"))
if sys.version_info[:2] == (2, 6):
sys.path.insert(0, os.path.join(spack_external_libs, "py26"))
sys.path.insert(0, spack_external_libs)

View File

@@ -1,6 +1,6 @@
#!/bin/sh
#
# Copyright 2013-2022 Lawrence Livermore National Security, LLC and other
# Copyright 2013-2021 Lawrence Livermore National Security, LLC and other
# Spack Project Developers. See the top-level COPYRIGHT file for details.
#
# SPDX-License-Identifier: (Apache-2.0 OR MIT)

View File

@@ -1,223 +0,0 @@
:: Copyright 2013-2021 Lawrence Livermore National Security, LLC and other
:: Spack Project Developers. See the top-level COPYRIGHT file for details.
::
:: SPDX-License-Identifier: (Apache-2.0 OR MIT)
::#######################################################################
::
:: This file is part of Spack and sets up the spack environment for batch,
:: This includes environment modules and lmod support,
:: and it also puts spack in your path. The script also checks that at least
:: module support exists, and provides suggestions if it doesn't. Source
:: it like this:
::
:: . /path/to/spack/install/spack_cmd.bat
::
@echo off
set spack=%SPACK_ROOT%\bin\spack
::#######################################################################
:: This is a wrapper around the spack command that forwards calls to
:: 'spack load' and 'spack unload' to shell functions. This in turn
:: allows them to be used to invoke environment modules functions.
::
:: 'spack load' is smarter than just 'load' because it converts its
:: arguments into a unique Spack spec that is then passed to module
:: commands. This allows the user to use packages without knowing all
:: their installation details.
::
:: e.g., rather than requiring a full spec for libelf, the user can type:
::
:: spack load libelf
::
:: This will first find the available libelf module file and use a
:: matching one. If there are two versions of libelf, the user would
:: need to be more specific, e.g.:
::
:: spack load libelf@0.8.13
::
:: This is very similar to how regular spack commands work and it
:: avoids the need to come up with a user-friendly naming scheme for
:: spack module files.
::#######################################################################
:_sp_shell_wrapper
set "_sp_flags="
set "_sp_args="
set "_sp_subcommand="
setlocal enabledelayedexpansion
:: commands have the form '[flags] [subcommand] [args]'
:: flags will always start with '-', e.g. --help or -V
:: subcommands will never start with '-'
:: everything after the subcommand is an arg
for %%x in (%*) do (
set t="%%~x"
if "!t:~0,1!" == "-" (
if defined _sp_subcommand (
:: We already have a subcommand, processing args now
set "_sp_args=!_sp_args! !t!"
) else (
set "_sp_flags=!_sp_flags! !t!"
shift
)
) else if not defined _sp_subcommand (
set "_sp_subcommand=!t!"
shift
) else (
set "_sp_args=!_sp_args! !t!"
shift
)
)
:: --help, -h and -V flags don't require further output parsing.
:: If we encounter, execute and exit
if defined _sp_flags (
if NOT "%_sp_flags%"=="%_sp_flags:-h=%" (
python "%spack%" %_sp_flags%
exit /B 0
) else if NOT "%_sp_flags%"=="%_sp_flags:--help=%" (
python "%spack%" %_sp_flags%
exit /B 0
) else if NOT "%_sp_flags%"=="%_sp_flags:-V=%" (
python "%spack%" %_sp_flags%
exit /B 0
)
)
:: pass parsed variables outside of local scope. Need to do
:: this because delayedexpansion can only be set by setlocal
echo %_sp_flags%>flags
echo %_sp_args%>args
echo %_sp_subcommand%>subcmd
endlocal
set /p _sp_subcommand=<subcmd
set /p _sp_flags=<flags
set /p _sp_args=<args
set str_subcommand=%_sp_subcommand:"='%
set str_flags=%_sp_flags:"='%
set str_args=%_sp_args:"='%
if "%str_subcommand%"=="ECHO is off." (set "_sp_subcommand=")
if "%str_flags%"=="ECHO is off." (set "_sp_flags=")
if "%str_args%"=="ECHO is off." (set "_sp_args=")
del subcmd
del flags
del args
:: Filter out some commands. For any others, just run the command.
if "%_sp_subcommand%" == "cd" (
goto :case_cd
) else if "%_sp_subcommand%" == "env" (
goto :case_env
) else if "%_sp_subcommand%" == "load" (
goto :case_load
) else if "%_sp_subcommand%" == "unload" (
goto :case_load
) else (
goto :default_case
)
::#######################################################################
:case_cd
:: Check for --help or -h
:: TODO: This is not exactly the same as setup-env.
:: In setup-env, '--help' or '-h' must follow the cd
:: Here, they may be anywhere in the args
if defined _sp_args (
if NOT "%_sp_args%"=="%_sp_args:--help=%" (
python "%spack%" cd -h
goto :end_switch
) else if NOT "%_sp_args%"=="%_sp_args:-h=%" (
python "%spack%" cd -h
goto :end_switch
)
)
for /F "tokens=* USEBACKQ" %%F in (
`python "%spack%" location %_sp_args%`) do (
set "LOC=%%F"
)
for %%Z in ("%LOC%") do if EXIST %%~sZ\NUL (cd /d "%LOC%")
goto :end_switch
:case_env
:: If no args or args contain --bat or -h/--help: just execute.
if NOT defined _sp_args (
goto :default_case
)else if NOT "%_sp_args%"=="%_sp_args:--help=%" (
goto :default_case
) else if NOT "%_sp_args%"=="%_sp_args: -h=%" (
goto :default_case
) else if NOT "%_sp_args%"=="%_sp_args:--bat=%" (
goto :default_case
) else if NOT "%_sp_args%"=="%_sp_args:deactivate=%" (
for /f "tokens=* USEBACKQ" %%I in (
`call python "%spack%" %_sp_flags% env deactivate --bat %_sp_args:deactivate=%`
) do %%I
) else if NOT "%_sp_args%"=="%_sp_args:activate=%" (
for /f "tokens=* USEBACKQ" %%I in (
`call python "%spack%" %_sp_flags% env activate --bat %_sp_args:activate=%`
) do %%I
) else (
goto :default_case
)
goto :end_switch
:case_load
:: If args contain --sh, --csh, or -h/--help: just execute.
if defined _sp_args (
if NOT "%_sp_args%"=="%_sp_args:--help=%" (
goto :default_case
) else if NOT "%_sp_args%"=="%_sp_args: -h=%" (
goto :default_case
) else if NOT "%_sp_args%"=="%_sp_args:--bat=%" (
goto :default_case
)
)
for /f "tokens=* USEBACKQ" %%I in (
`python "%spack%" %_sp_flags% %_sp_subcommand% --bat %_sp_args%`) do %%I
)
goto :end_switch
:case_unload
goto :case_load
:default_case
python "%spack%" %_sp_flags% %_sp_subcommand% %_sp_args%
goto :end_switch
:end_switch
exit /B %ERRORLEVEL%
::########################################################################
:: Prepends directories to path, if they exist.
:: pathadd /path/to/dir # add to PATH
:: or pathadd OTHERPATH /path/to/dir # add to OTHERPATH
::########################################################################
:_spack_pathadd
set "_pa_varname=PATH"
set "_pa_new_path=%~1"
if NOT "%~2" == "" (
set "_pa_varname=%~1"
set "_pa_new_path=%~2"
)
set "_pa_oldvalue=%_pa_varname%"
for %%Z in ("%_pa_new_path%") do if EXIST %%~sZ\NUL (
if defined %_pa_oldvalue% (
set "_pa_varname=%_pa_new_path%:%_pa_oldvalue%"
) else (
set "_pa_varname=%_pa_new_path%"
)
)
exit /b 0
:: set module system roots
:_sp_multi_pathadd
for %%I in (%~2) do (
for %%Z in (%_sp_compatible_sys_types%) do (
:pathadd "%~1" "%%I\%%Z"
)
)
exit /B %ERRORLEVEL%

View File

@@ -1,72 +0,0 @@
@ECHO OFF
setlocal EnableDelayedExpansion
:: (c) 2021 Lawrence Livermore National Laboratory
:: To use this file independently of Spack's installer, execute this script in its directory, or add the
:: associated bin directory to your PATH. Invoke to launch Spack Shell.
::
:: source_dir/spack/bin/spack_cmd.bat
::
pushd %~dp0..
set SPACK_ROOT=%CD%
pushd %CD%\..
set spackinstdir=%CD%
popd
:: Check if Python is on the PATH
if not defined python_pf_ver (
(for /f "delims=" %%F in ('where python.exe') do (
set "python_pf_ver=%%F"
goto :found_python
) ) 2> NUL
)
:found_python
if not defined python_pf_ver (
:: If not, look for Python from the Spack installer
:get_builtin
(for /f "tokens=*" %%g in ('dir /b /a:d "!spackinstdir!\Python*"') do (
set "python_ver=%%g")) 2> NUL
if not defined python_ver (
echo Python was not found on your system.
echo Please install Python or add Python to your PATH.
) else (
set "py_path=!spackinstdir!\!python_ver!"
set "py_exe=!py_path!\python.exe"
)
goto :exitpoint
) else (
:: Python is already on the path
set "py_exe=!python_pf_ver!"
(for /F "tokens=* USEBACKQ" %%F in (
`"!py_exe!" --version`) do (set "output=%%F")) 2>NUL
if not "!output:Microsoft Store=!"=="!output!" goto :get_builtin
goto :exitpoint
)
:exitpoint
set "PATH=%SPACK_ROOT%\bin\;%PATH%"
if defined py_path (
set "PATH=%py_path%;%PATH%"
)
if defined py_exe (
"%py_exe%" "%SPACK_ROOT%\bin\haspywin.py"
"%py_exe%" "%SPACK_ROOT%\bin\spack" external find python >NUL
)
set "EDITOR=notepad"
DOSKEY spacktivate=spack env activate $*
@echo **********************************************************************
@echo ** Spack Package Manager
@echo **********************************************************************
IF "%1"=="" GOTO CONTINUE
set
GOTO:EOF
:continue
set PROMPT=[spack] %PROMPT%
%comspec% /k

View File

@@ -1,10 +0,0 @@
# Copyright 2013-2022 Lawrence Livermore National Security, LLC and other
# Spack Project Developers. See the top-level COPYRIGHT file for details.
#
# SPDX-License-Identifier: (Apache-2.0 OR MIT)
$Env:SPACK_PS1_PATH="$PSScriptRoot\..\share\spack\setup-env.ps1"
& (Get-Process -Id $pid).Path -NoExit {
. $Env:SPACK_PS1_PATH ;
Push-Location $ENV:SPACK_ROOT
}

View File

@@ -4,29 +4,20 @@ bootstrap:
enable: true
# Root directory for bootstrapping work. The software bootstrapped
# by Spack is installed in a "store" subfolder of this root directory
root: $user_cache_path/bootstrap
root: ~/.spack/bootstrap
# Methods that can be used to bootstrap software. Each method may or
# may not be able to bootstrap all of the software that Spack needs,
# depending on its type.
sources:
- name: 'github-actions-v0.2'
type: buildcache
description: |
Buildcache generated from a public workflow using Github Actions.
The sha256 checksum of binaries is checked before installation.
info:
url: https://mirror.spack.io/bootstrap/github-actions/v0.2
homepage: https://github.com/spack/spack-bootstrap-mirrors
releases: https://github.com/spack/spack-bootstrap-mirrors/releases
- name: 'github-actions-v0.1'
- name: 'github-actions'
type: buildcache
description: |
Buildcache generated from a public workflow using Github Actions.
The sha256 checksum of binaries is checked before installation.
info:
url: https://mirror.spack.io/bootstrap/github-actions/v0.1
homepage: https://github.com/spack/spack-bootstrap-mirrors
releases: https://github.com/spack/spack-bootstrap-mirrors/releases
homepage: https://github.com/alalazo/spack-bootstrap-mirrors
releases: https://github.com/alalazo/spack-bootstrap-mirrors/releases
# This method is just Spack bootstrapping the software it needs from sources.
# It has been added here so that users can selectively disable bootstrapping
# from sources by "untrusting" it.
@@ -37,5 +28,5 @@ bootstrap:
trusted:
# By default we trust bootstrapping from sources and from binaries
# produced on Github via the workflow
github-actions-v0.2: true
spack-install: true
github-actions: true
spack-install: true

View File

@@ -1,17 +0,0 @@
# -------------------------------------------------------------------------
# This is the default spack configuration file.
#
# Settings here are versioned with Spack and are intended to provide
# sensible defaults out of the box. Spack maintainers should edit this
# file to keep it current.
#
# Users can override these settings by editing
# `$SPACK_ROOT/etc/spack/concretizer.yaml`, `~/.spack/concretizer.yaml`,
# or by adding a `concretizer:` section to an environment.
# -------------------------------------------------------------------------
concretizer:
# Whether to consider installed packages or packages from buildcaches when
# concretizing specs. If `true`, we'll try to use as many installs/binaries
# as possible, rather than building. If `false`, we'll always give you a fresh
# concretization.
reuse: false

View File

@@ -42,8 +42,8 @@ config:
# (i.e., ``$TMP` or ``$TMPDIR``).
#
# Another option that prevents conflicts and potential permission issues is
# to specify `$user_cache_path/stage`, which ensures each user builds in their
# home directory.
# to specify `~/.spack/stage`, which ensures each user builds in their home
# directory.
#
# A more traditional path uses the value of `$spack/var/spack/stage`, which
# builds directly inside Spack's instance without staging them in a
@@ -60,13 +60,13 @@ config:
# identifies Spack staging to avoid accidentally wiping out non-Spack work.
build_stage:
- $tempdir/$user/spack-stage
- $user_cache_path/stage
- ~/.spack/stage
# - $spack/var/spack/stage
# Directory in which to run tests and store test results.
# Tests will be stored in directories named by date/time and package
# name/hash.
test_stage: $user_cache_path/test
test_stage: ~/.spack/test
# Cache directory for already downloaded source tarballs and archived
# repositories. This can be purged with `spack clean --downloads`.
@@ -75,7 +75,7 @@ config:
# Cache directory for miscellaneous files, like the package index.
# This can be purged with `spack clean --misc-cache`
misc_cache: $user_cache_path/cache
misc_cache: ~/.spack/cache
# Timeout in seconds used for downloading sources etc. This only applies
@@ -134,7 +134,7 @@ config:
# enabling locks.
locks: true
# The default url fetch method to use.
# The default url fetch method to use.
# If set to 'curl', Spack will require curl on the user's system
# If set to 'urllib', Spack will use python built-in libs to fetch
url_fetch_method: urllib
@@ -155,18 +155,16 @@ config:
# The concretization algorithm to use in Spack. Options are:
#
# 'clingo': Uses a logic solver under the hood to solve DAGs with full
# backtracking and optimization for user preferences. Spack will
# try to bootstrap the logic solver, if not already available.
#
# 'original': Spack's original greedy, fixed-point concretizer. This
# algorithm can make decisions too early and will not backtrack
# sufficiently for many specs. This will soon be deprecated in
# favor of clingo.
# sufficiently for many specs.
#
# See `concretizer.yaml` for more settings you can fine-tune when
# using clingo.
concretizer: clingo
# 'clingo': Uses a logic solver under the hood to solve DAGs with full
# backtracking and optimization for user preferences.
#
# 'clingo' currently requires the clingo ASP solver to be installed and
# built with python bindings. 'original' is built in.
concretizer: original
# How long to wait to lock the Spack installation database. This lock is used
@@ -193,8 +191,3 @@ config:
# Set to 'false' to allow installation on filesystems that doesn't allow setgid bit
# manipulation by unprivileged user (e.g. AFS)
allow_sgid: true
# Whether to set the terminal title to display status information during
# building and installing packages. This gives information about Spack's
# current progress as well as the current and total number of packages.
terminal_title: false

View File

@@ -35,21 +35,18 @@ modules:
# These are configurations for the module set named "default"
default:
# These values are defaulted in the code. They are not defaulted here so
# that we can enable backwards compatibility with the old syntax more
# easily (old value is in the config yaml, config:module_roots)
# Where to install modules
roots:
tcl: $spack/share/spack/modules
lmod: $spack/share/spack/lmod
# roots:
# tcl: $spack/share/spack/modules
# lmod: $spack/share/spack/lmod
# What type of modules to use
enable:
- tcl
tcl:
all:
autoload: none
# Default configurations if lmod is enabled
lmod:
all:
autoload: direct
hierarchy:
- mpi

View File

@@ -34,7 +34,6 @@ packages:
java: [openjdk, jdk, ibm-java]
jpeg: [libjpeg-turbo, libjpeg]
lapack: [openblas, amdlibflame]
libllvm: [llvm, llvm-amdgpu]
lua-lang: [lua, lua-luajit]
mariadb-client: [mariadb-c-client, mariadb]
mkl: [intel-mkl]

View File

@@ -1,5 +0,0 @@
config:
locks: false
concretizer: original
build_stage::
- '$spack/.staging'

View File

@@ -1,4 +1,4 @@
.. Copyright 2013-2022 Lawrence Livermore National Security, LLC and other
.. Copyright 2013-2021 Lawrence Livermore National Security, LLC and other
Spack Project Developers. See the top-level COPYRIGHT file for details.
SPDX-License-Identifier: (Apache-2.0 OR MIT)
@@ -59,7 +59,7 @@ are available:
install_files : install file listing read from install_manifest.json
environment_variables : environment variables parsed from spack-build-env.txt
config_args : config args loaded from spack-configure-args.txt
libabigail : Application Binary Interface (ABI) features for objects
abigail : Application Binary Interface (ABI) features for objects
In the above, the first three are fairly simple - parsing metadata files from

View File

@@ -1,4 +1,4 @@
.. Copyright 2013-2022 Lawrence Livermore National Security, LLC and other
.. Copyright 2013-2021 Lawrence Livermore National Security, LLC and other
Spack Project Developers. See the top-level COPYRIGHT file for details.
SPDX-License-Identifier: (Apache-2.0 OR MIT)
@@ -31,13 +31,13 @@ colorized output with a flag
.. code-block:: console
$ spack --color always find | less -R
$ spack --color always | less -R
or an environment variable
.. code-block:: console
$ SPACK_COLOR=always spack find | less -R
$ SPACK_COLOR=always spack | less -R
--------------------------
Listing available packages
@@ -188,37 +188,6 @@ configuration a **spec**. In the commands above, ``mpileaks`` and
``mpileaks@3.0.4`` are both valid *specs*. We'll talk more about how
you can use them to customize an installation in :ref:`sec-specs`.
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
Reusing installed dependencies
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
.. warning::
The ``--reuse`` option described here will become the default installation
method in the next Spack version, and you will be able to get the current
behavior by using ``spack install --fresh``.
By default, when you run ``spack install``, Spack tries to build a new
version of the package you asked for, along with updated versions of
its dependencies. This gets you the latest versions and configurations,
but it can result in unwanted rebuilds if you update Spack frequently.
If you want Spack to try hard to reuse existing installations as dependencies,
you can add the ``--reuse`` option:
.. code-block:: console
$ spack install --reuse mpich
This will not do anything if ``mpich`` is already installed. If ``mpich``
is not installed, but dependencies like ``hwloc`` and ``libfabric`` are,
the ``mpich`` will be build with the installed versions, if possible.
You can use the :ref:`spack spec -I <cmd-spack-spec>` command to see what
will be reused and what will be built before you install.
You can configure Spack to use the ``--reuse`` behavior by default in
``concretizer.yaml``.
.. _cmd-spack-uninstall:
^^^^^^^^^^^^^^^^^^^
@@ -899,9 +868,8 @@ your path:
These commands will add appropriate directories to your ``PATH``,
``MANPATH``, ``CPATH``, and ``LD_LIBRARY_PATH`` according to the
:ref:`prefix inspections <customize-env-modifications>` defined in your
modules configuration.
When you no longer want to use a package, you can type unload or
unuse similarly:
modules configuration. When you no longer want to use a package, you
can type unload or unuse similarly:
.. code-block:: console
@@ -942,22 +910,6 @@ first ``libelf`` above, you would run:
$ spack load /qmm4kso
To see which packages that you have loaded to your enviornment you would
use ``spack find --loaded``.
.. code-block:: console
$ spack find --loaded
==> 2 installed packages
-- linux-debian7 / gcc@4.4.7 ------------------------------------
libelf@0.8.13
-- linux-debian7 / intel@15.0.0 ---------------------------------
libelf@0.8.13
You can also use ``spack load --list`` to get the same output, but it
does not have the full set of query options that ``spack find`` offers.
We'll learn more about Spack's spec syntax in the next section.
@@ -1283,7 +1235,7 @@ Normally users don't have to bother specifying the architecture if they
are installing software for their current host, as in that case the
values will be detected automatically. If you need fine-grained control
over which packages use which targets (or over *all* packages' default
target), see :ref:`package-preferences`.
target), see :ref:`concretization-preferences`.
.. admonition:: Cray machines
@@ -1697,7 +1649,6 @@ and it will be added to the ``PYTHONPATH`` in your current shell:
Now ``import numpy`` will succeed for as long as you keep your current
session open.
The loaded packages can be checked using ``spack find --loaded``
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
Loading Extensions via Modules
@@ -1723,8 +1674,8 @@ Activating Extensions in a View
Another way to use extensions is to create a view, which merges the
python installation along with the extensions into a single prefix.
See :ref:`configuring_environment_views` for a more in-depth description
of views.
See :ref:`filesystem-views` for a more in-depth description of views and
:ref:`cmd-spack-view` for usage of the ``spack view`` command.
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
Activating Extensions Globally

View File

@@ -1,4 +1,4 @@
.. Copyright 2013-2022 Lawrence Livermore National Security, LLC and other
.. Copyright 2013-2021 Lawrence Livermore National Security, LLC and other
Spack Project Developers. See the top-level COPYRIGHT file for details.
SPDX-License-Identifier: (Apache-2.0 OR MIT)

View File

@@ -1,13 +1,13 @@
.. Copyright 2013-2022 Lawrence Livermore National Security, LLC and other
.. Copyright 2013-2021 Lawrence Livermore National Security, LLC and other
Spack Project Developers. See the top-level COPYRIGHT file for details.
SPDX-License-Identifier: (Apache-2.0 OR MIT)
.. _build-settings:
================================
Package Settings (packages.yaml)
================================
===================
Build Customization
===================
Spack allows you to customize how your software is built through the
``packages.yaml`` file. Using it, you can make Spack prefer particular
@@ -209,49 +209,11 @@ Specific limitations include:
then Spack will not add a new external entry (``spack config blame packages``
can help locate all external entries).
.. _concretizer-options:
.. _concretization-preferences:
----------------------
Concretizer options
----------------------
``packages.yaml`` gives the concretizer preferences for specific packages,
but you can also use ``concretizer.yaml`` to customize aspects of the
algorithm it uses to select the dependencies you install:
.. _code-block: yaml
concretizer:
# Whether to consider installed packages or packages from buildcaches when
# concretizing specs. If `true`, we'll try to use as many installs/binaries
# as possible, rather than building. If `false`, we'll always give you a fresh
# concretization.
reuse: false
^^^^^^^^^^^^^^^^
``reuse``
^^^^^^^^^^^^^^^^
This controls whether Spack will prefer to use installed packages (``true``), or
whether it will do a "fresh" installation and prefer the latest settings from
``package.py`` files and ``packages.yaml`` (``false``). .
You can use ``spack install --reuse`` to enable reuse for a single installation,
and you can use ``spack install --fresh`` to do a fresh install if ``reuse`` is
enabled by default.
.. note::
``reuse: false`` is the current default, but ``reuse: true`` will be the default
in the next Spack release. You will still be able to use ``spack install --fresh``
to get the old behavior.
.. _package-preferences:
-------------------
Package Preferences
-------------------
--------------------------
Concretization Preferences
--------------------------
Spack can be configured to prefer certain compilers, package
versions, dependencies, and variants during concretization.
@@ -307,7 +269,6 @@ concretization rules. A provider lists a value that packages may
``depend_on`` (e.g, MPI) and a list of rules for fulfilling that
dependency.
.. _package_permissions:
-------------------

View File

@@ -1,4 +1,4 @@
.. Copyright 2013-2022 Lawrence Livermore National Security, LLC and other
.. Copyright 2013-2021 Lawrence Livermore National Security, LLC and other
Spack Project Developers. See the top-level COPYRIGHT file for details.
SPDX-License-Identifier: (Apache-2.0 OR MIT)
@@ -51,7 +51,6 @@ on these ideas for each distinct build system that Spack supports:
build_systems/perlpackage
build_systems/pythonpackage
build_systems/rpackage
build_systems/racketpackage
build_systems/rubypackage
.. toctree::

View File

@@ -1,4 +1,4 @@
.. Copyright 2013-2022 Lawrence Livermore National Security, LLC and other
.. Copyright 2013-2021 Lawrence Livermore National Security, LLC and other
Spack Project Developers. See the top-level COPYRIGHT file for details.
SPDX-License-Identifier: (Apache-2.0 OR MIT)
@@ -112,44 +112,20 @@ phase runs:
.. code-block:: console
$ autoreconf --install --verbose --force -I <aclocal-prefix>/share/aclocal
In case you need to add more arguments, override ``autoreconf_extra_args``
in your ``package.py`` on class scope like this:
.. code-block:: python
autoreconf_extra_args = ["-Im4"]
$ libtoolize
$ aclocal
$ autoreconf --install --verbose --force
All you need to do is add a few Autotools dependencies to the package.
Most stable releases will come with a ``configure`` script, but if you
check out a commit from the ``master`` branch, you would want to add:
check out a commit from the ``develop`` branch, you would want to add:
.. code-block:: python
depends_on('autoconf', type='build', when='@master')
depends_on('automake', type='build', when='@master')
depends_on('libtool', type='build', when='@master')
It is typically redundant to list the ``m4`` macro processor package as a
dependency, since ``autoconf`` already depends on it.
"""""""""""""""""""""""""""""""
Using a custom autoreconf phase
"""""""""""""""""""""""""""""""
In some cases, it might be needed to replace the default implementation
of the autoreconf phase with one running a script interpreter. In this
example, the ``bash`` shell is used to run the ``autogen.sh`` script.
.. code-block:: python
def autoreconf(self, spec, prefix):
which('bash')('autogen.sh')
"""""""""""""""""""""""""""""""""""""""
patching configure or Makefile.in files
"""""""""""""""""""""""""""""""""""""""
depends_on('autoconf', type='build', when='@develop')
depends_on('automake', type='build', when='@develop')
depends_on('libtool', type='build', when='@develop')
depends_on('m4', type='build', when='@develop')
In some cases, developers might need to distribute a patch that modifies
one of the files used to generate ``configure`` or ``Makefile.in``.
@@ -159,57 +135,6 @@ create a new patch that directly modifies ``configure``. That way,
Spack can use the secondary patch and additional build system
dependencies aren't necessary.
""""""""""""""""""""""""""""
Old Autotools helper scripts
""""""""""""""""""""""""""""
Autotools based tarballs come with helper scripts such as ``config.sub`` and
``config.guess``. It is the responsibility of the developers to keep these files
up to date so that they run on every platform, but for very old software
releases this is impossible. In these cases Spack can help to replace these
files with newer ones, without having to add the heavy dependency on
``automake``.
Automatic helper script replacement is currently enabled by default on
``ppc64le`` and ``aarch64``, as these are the known cases where old scripts fail.
On these targets, ``AutotoolsPackage`` adds a build dependency on ``gnuconfig``,
which is a very light-weight package with newer versions of the helper files.
Spack then tries to run all the helper scripts it can find in the release, and
replaces them on failure with the helper scripts from ``gnuconfig``.
To opt out of this feature, use the following setting:
.. code-block:: python
patch_config_files = False
To enable it conditionally on different architectures, define a property and
make the package depend on ``gnuconfig`` as a build dependency:
.. code-block
depends_on('gnuconfig', when='@1.0:')
@property
def patch_config_files(self):
return self.spec.satisfies("@1.0:")
.. note::
On some exotic architectures it is necessary to use system provided
``config.sub`` and ``config.guess`` files. In this case, the most
transparent solution is to mark the ``gnuconfig`` package as external and
non-buildable, with a prefix set to the directory containing the files:
.. code-block:: yaml
gnuconfig:
buildable: false
externals:
- spec: gnuconfig@master
prefix: /usr/share/configure_files/
""""""""""""""""
force_autoreconf
""""""""""""""""
@@ -399,47 +324,8 @@ options:
--with-libfabric=</path/to/libfabric>
"""""""""""""""""""""""
The ``variant`` keyword
"""""""""""""""""""""""
When Spack variants and configure flags do not correspond one-to-one, the
``variant`` keyword can be passed to ``with_or_without`` and
``enable_or_disable``. For example:
.. code-block:: python
variant('debug_tools', default=False)
config_args += self.enable_or_disable('debug-tools', variant='debug_tools')
Or when one variant controls multiple flags:
.. code-block:: python
variant('debug_tools', default=False)
config_args += self.with_or_without('memchecker', variant='debug_tools')
config_args += self.with_or_without('profiler', variant='debug_tools')
""""""""""""""""""""
Conditional variants
""""""""""""""""""""
When a variant is conditional and its condition is not met on the concrete spec, the
``with_or_without`` and ``enable_or_disable`` methods will simply return an empty list.
For example:
.. code-block:: python
variant('profiler', when='@2.0:')
config_args += self.with_or_without('profiler')
will neither add ``--with-profiler`` nor ``--without-profiler`` when the version is
below ``2.0``.
""""""""""""""""""""
Activation overrides
activation overrides
""""""""""""""""""""
Finally, the behavior of either ``with_or_without`` or

View File

@@ -1,4 +1,4 @@
.. Copyright 2013-2022 Lawrence Livermore National Security, LLC and other
.. Copyright 2013-2021 Lawrence Livermore National Security, LLC and other
Spack Project Developers. See the top-level COPYRIGHT file for details.
SPDX-License-Identifier: (Apache-2.0 OR MIT)

View File

@@ -1,4 +1,4 @@
.. Copyright 2013-2022 Lawrence Livermore National Security, LLC and other
.. Copyright 2013-2021 Lawrence Livermore National Security, LLC and other
Spack Project Developers. See the top-level COPYRIGHT file for details.
SPDX-License-Identifier: (Apache-2.0 OR MIT)
@@ -145,99 +145,6 @@ and without the :meth:`~spack.build_systems.cmake.CMakePackage.define` and
return args
Spack supports CMake defines from conditional variants too. Whenever the condition on
the variant is not met, ``define_from_variant()`` will simply return an empty string,
and CMake simply ignores the empty command line argument. For example the following
.. code-block:: python
variant('example', default=True, when='@2.0:')
def cmake_args(self):
return [self.define_from_variant('EXAMPLE', 'example')]
will generate ``'cmake' '-DEXAMPLE=ON' ...`` when `@2.0: +example` is met, but will
result in ``'cmake' '' ...`` when the spec version is below ``2.0``.
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
CMake arguments provided by Spack
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
The following default arguments are controlled by Spack:
``CMAKE_INSTALL_PREFIX``
------------------------
Is set to the the package's install directory.
``CMAKE_PREFIX_PATH``
---------------------
CMake finds dependencies through calls to ``find_package()``, ``find_program()``,
``find_library()``, ``find_file()``, and ``find_path()``, which use a list of search
paths from ``CMAKE_PREFIX_PATH``. Spack sets this variable to a list of prefixes of the
spec's transitive dependencies.
For troubleshooting cases where CMake fails to find a dependency, add the
``--debug-find`` flag to ``cmake_args``.
``CMAKE_BUILD_TYPE``
--------------------
Every CMake-based package accepts a ``-DCMAKE_BUILD_TYPE`` flag to
dictate which level of optimization to use. In order to ensure
uniformity across packages, the ``CMakePackage`` base class adds
a variant to control this:
.. code-block:: python
variant('build_type', default='RelWithDebInfo',
description='CMake build type',
values=('Debug', 'Release', 'RelWithDebInfo', 'MinSizeRel'))
However, not every CMake package accepts all four of these options.
Grep the ``CMakeLists.txt`` file to see if the default values are
missing or replaced. For example, the
`dealii <https://github.com/spack/spack/blob/develop/var/spack/repos/builtin/packages/dealii/package.py>`_
package overrides the default variant with:
.. code-block:: python
variant('build_type', default='DebugRelease',
description='The build type to build',
values=('Debug', 'Release', 'DebugRelease'))
For more information on ``CMAKE_BUILD_TYPE``, see:
https://cmake.org/cmake/help/latest/variable/CMAKE_BUILD_TYPE.html
``CMAKE_INSTALL_RPATH`` and ``CMAKE_INSTALL_RPATH_USE_LINK_PATH=ON``
--------------------------------------------------------------------
CMake uses different RPATHs during the build and after installation, so that executables
can locate the libraries they're linked to during the build, and installed executables
do not have RPATHs to build directories. In Spack, we have to make sure that RPATHs are
set properly after installation.
Spack sets ``CMAKE_INSTALL_RPATH`` to a list of ``<prefix>/lib`` or ``<prefix>/lib64``
directories of the spec's link-type dependencies. Apart from that, it sets
``-DCMAKE_INSTALL_RPATH_USE_LINK_PATH=ON``, which should add RPATHs for directories of
linked libraries not in the directories covered by ``CMAKE_INSTALL_RPATH``.
Usually it's enough to set only ``-DCMAKE_INSTALL_RPATH_USE_LINK_PATH=ON``, but the
reason to provide both options is that packages may dynamically open shared libraries,
which CMake cannot detect. In those cases, the RPATHs from ``CMAKE_INSTALL_RPATH`` are
used as search paths.
.. note::
Some packages provide stub libraries, which contain an interface for linking without
an implementation. When using such libraries, it's best to override the option
``-DCMAKE_INSTALL_RPATH_USE_LINK_PATH=OFF`` in ``cmake_args``, so that stub libraries
are not used at runtime.
^^^^^^^^^^
Generators
@@ -275,6 +182,36 @@ generators, but it should be simple to add support for alternative
generators. For more information on CMake generators, see:
https://cmake.org/cmake/help/latest/manual/cmake-generators.7.html
^^^^^^^^^^^^^^^^
CMAKE_BUILD_TYPE
^^^^^^^^^^^^^^^^
Every CMake-based package accepts a ``-DCMAKE_BUILD_TYPE`` flag to
dictate which level of optimization to use. In order to ensure
uniformity across packages, the ``CMakePackage`` base class adds
a variant to control this:
.. code-block:: python
variant('build_type', default='RelWithDebInfo',
description='CMake build type',
values=('Debug', 'Release', 'RelWithDebInfo', 'MinSizeRel'))
However, not every CMake package accepts all four of these options.
Grep the ``CMakeLists.txt`` file to see if the default values are
missing or replaced. For example, the
`dealii <https://github.com/spack/spack/blob/develop/var/spack/repos/builtin/packages/dealii/package.py>`_
package overrides the default variant with:
.. code-block:: python
variant('build_type', default='DebugRelease',
description='The build type to build',
values=('Debug', 'Release', 'DebugRelease'))
For more information on ``CMAKE_BUILD_TYPE``, see:
https://cmake.org/cmake/help/latest/variable/CMAKE_BUILD_TYPE.html
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
CMakeLists.txt in a sub-directory
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^

View File

@@ -1,4 +1,4 @@
.. Copyright 2013-2022 Lawrence Livermore National Security, LLC and other
.. Copyright 2013-2021 Lawrence Livermore National Security, LLC and other
Spack Project Developers. See the top-level COPYRIGHT file for details.
SPDX-License-Identifier: (Apache-2.0 OR MIT)

View File

@@ -1,4 +1,4 @@
.. Copyright 2013-2022 Lawrence Livermore National Security, LLC and other
.. Copyright 2013-2021 Lawrence Livermore National Security, LLC and other
Spack Project Developers. See the top-level COPYRIGHT file for details.
SPDX-License-Identifier: (Apache-2.0 OR MIT)

View File

@@ -1,4 +1,4 @@
.. Copyright 2013-2022 Lawrence Livermore National Security, LLC and other
.. Copyright 2013-2021 Lawrence Livermore National Security, LLC and other
Spack Project Developers. See the top-level COPYRIGHT file for details.
SPDX-License-Identifier: (Apache-2.0 OR MIT)

View File

@@ -1,4 +1,4 @@
.. Copyright 2013-2022 Lawrence Livermore National Security, LLC and other
.. Copyright 2013-2021 Lawrence Livermore National Security, LLC and other
Spack Project Developers. See the top-level COPYRIGHT file for details.
SPDX-License-Identifier: (Apache-2.0 OR MIT)
@@ -649,7 +649,7 @@ follow `the next section <intel-install-libs_>`_ instead.
* If you specified a custom variant (for example ``+vtune``) you may want to add this as your
preferred variant in the packages configuration for the ``intel-parallel-studio`` package
as described in :ref:`package-preferences`. Otherwise you will have to specify
as described in :ref:`concretization-preferences`. Otherwise you will have to specify
the variant everytime ``intel-parallel-studio`` is being used as ``mkl``, ``fftw`` or ``mpi``
implementation to avoid pulling in a different variant.
@@ -811,13 +811,13 @@ by one of the following means:
$ spack install libxc@3.0.0%intel
* Alternatively, request Intel compilers implicitly by package preferences.
* Alternatively, request Intel compilers implicitly by concretization preferences.
Configure the order of compilers in the appropriate ``packages.yaml`` file,
under either an ``all:`` or client-package-specific entry, in a
``compiler:`` list. Consult the Spack documentation for
`Configuring Package Preferences <https://spack-tutorial.readthedocs.io/en/latest/tutorial_configuration.html#configuring-package-preferences>`_
and
:ref:`Package Preferences <package-preferences>`.
:ref:`Concretization Preferences <concretization-preferences>`.
Example: ``etc/spack/packages.yaml`` might simply contain:
@@ -867,7 +867,7 @@ virtual package, in order of decreasing preference. To learn more about the
``providers:`` settings, see the Spack tutorial for
`Configuring Package Preferences <https://spack-tutorial.readthedocs.io/en/latest/tutorial_configuration.html#configuring-package-preferences>`_
and the section
:ref:`Package Preferences <package-preferences>`.
:ref:`Concretization Preferences <concretization-preferences>`.
Example: The following fairly minimal example for ``packages.yaml`` shows how
to exclusively use the standalone ``intel-mkl`` package for all the linear

View File

@@ -1,4 +1,4 @@
.. Copyright 2013-2022 Lawrence Livermore National Security, LLC and other
.. Copyright 2013-2021 Lawrence Livermore National Security, LLC and other
Spack Project Developers. See the top-level COPYRIGHT file for details.
SPDX-License-Identifier: (Apache-2.0 OR MIT)

View File

@@ -1,4 +1,4 @@
.. Copyright 2013-2022 Lawrence Livermore National Security, LLC and other
.. Copyright 2013-2021 Lawrence Livermore National Security, LLC and other
Spack Project Developers. See the top-level COPYRIGHT file for details.
SPDX-License-Identifier: (Apache-2.0 OR MIT)

View File

@@ -1,4 +1,4 @@
.. Copyright 2013-2022 Lawrence Livermore National Security, LLC and other
.. Copyright 2013-2021 Lawrence Livermore National Security, LLC and other
Spack Project Developers. See the top-level COPYRIGHT file for details.
SPDX-License-Identifier: (Apache-2.0 OR MIT)

View File

@@ -1,4 +1,4 @@
.. Copyright 2013-2022 Lawrence Livermore National Security, LLC and other
.. Copyright 2013-2021 Lawrence Livermore National Security, LLC and other
Spack Project Developers. See the top-level COPYRIGHT file for details.
SPDX-License-Identifier: (Apache-2.0 OR MIT)

View File

@@ -1,4 +1,4 @@
.. Copyright 2013-2022 Lawrence Livermore National Security, LLC and other
.. Copyright 2013-2021 Lawrence Livermore National Security, LLC and other
Spack Project Developers. See the top-level COPYRIGHT file for details.
SPDX-License-Identifier: (Apache-2.0 OR MIT)

View File

@@ -1,4 +1,4 @@
.. Copyright 2013-2022 Lawrence Livermore National Security, LLC and other
.. Copyright 2013-2021 Lawrence Livermore National Security, LLC and other
Spack Project Developers. See the top-level COPYRIGHT file for details.
SPDX-License-Identifier: (Apache-2.0 OR MIT)

View File

@@ -1,4 +1,4 @@
.. Copyright 2013-2022 Lawrence Livermore National Security, LLC and other
.. Copyright 2013-2021 Lawrence Livermore National Security, LLC and other
Spack Project Developers. See the top-level COPYRIGHT file for details.
SPDX-License-Identifier: (Apache-2.0 OR MIT)
@@ -9,94 +9,224 @@
PythonPackage
-------------
Python packages and modules have their own special build system. This
documentation covers everything you'll need to know in order to write
a Spack build recipe for a Python library.
Python packages and modules have their own special build system.
^^^^^^^^^^^
Terminology
^^^^^^^^^^^
^^^^^^
Phases
^^^^^^
In the Python ecosystem, there are a number of terms that are
important to understand.
The ``PythonPackage`` base class provides the following phases that
can be overridden:
**PyPI**
The `Python Package Index <https://pypi.org/>`_, where most Python
libraries are hosted.
* ``build``
* ``build_py``
* ``build_ext``
* ``build_clib``
* ``build_scripts``
* ``install``
* ``install_lib``
* ``install_headers``
* ``install_scripts``
* ``install_data``
**sdist**
Source distributions, distributed as tarballs (.tar.gz) and zip
files (.zip). Contain the source code of the package.
**bdist**
Built distributions, distributed as wheels (.whl). Contain the
pre-built library.
**wheel**
A binary distribution format common in the Python ecosystem. This
file is actually just a zip file containing specific metadata and
code. See the
`documentation <https://packaging.python.org/en/latest/specifications/binary-distribution-format/>`_
for more details.
**build frontend**
Command-line tools used to build and install wheels. Examples
include `pip <https://pip.pypa.io/>`_,
`build <https://pypa-build.readthedocs.io/>`_, and
`installer <https://installer.readthedocs.io/>`_.
**build backend**
Libraries used to define how to build a wheel. Examples
include `setuptools <https://setuptools.pypa.io/>`__,
`flit <https://flit.readthedocs.io/>`_, and
`poetry <https://python-poetry.org/>`_.
^^^^^^^^^^^
Downloading
^^^^^^^^^^^
The first step in packaging a Python library is to figure out where
to download it from. The vast majority of Python packages are hosted
on `PyPI <https://pypi.org/>`_, which is
:ref:`preferred over GitHub <pypi-vs-github>` for downloading
packages. Search for the package name on PyPI to find the project
page. The project page is usually located at::
https://pypi.org/project/<package-name>
On the project page, there is a "Download files" tab containing
download URLs. Whenever possible, we prefer to build Spack packages
from source. If PyPI only has wheels, check to see if the project is
hosted on GitHub and see if GitHub has source distributions. The
project page usually has a "Homepage" and/or "Source code" link for
this. If the project is closed-source, it may only have wheels
available. For example, ``py-azureml-sdk`` is closed-source and can
be downloaded from::
https://pypi.io/packages/py3/a/azureml_sdk/azureml_sdk-1.11.0-py3-none-any.whl
Once you've found a URL to download the package from, run:
These are all standard ``setup.py`` commands and can be found by running:
.. code-block:: console
$ spack create <url>
$ python setup.py --help-commands
to create a new package template.
By default, only the ``build`` and ``install`` phases are run:
#. ``build`` - build everything needed to install
#. ``install`` - install everything from build directory
If for whatever reason you need to run more phases, simply modify your
``phases`` list like so:
.. code-block:: python
phases = ['build_ext', 'install']
Each phase provides a function ``<phase>`` that runs:
.. code-block:: console
$ python -s setup.py --no-user-cfg <phase>
Each phase also has a ``<phase_args>`` function that can pass arguments to
this call. All of these functions are empty except for the ``install_args``
function, which passes ``--prefix=/path/to/installation/prefix``. There is
also some additional logic specific to setuptools and eggs.
If you need to run a phase that is not a standard ``setup.py`` command,
you'll need to define a function for it like so:
.. code-block:: python
phases = ['configure', 'build', 'install']
def configure(self, spec, prefix):
self.setup_py('configure')
^^^^^^
Wheels
^^^^^^
Some Python packages are closed-source and distributed as wheels.
Instead of using the ``PythonPackage`` base class, you should extend
the ``Package`` base class and implement the following custom installation
procedure:
.. code-block:: python
def install(self, spec, prefix):
pip = which('pip')
pip('install', self.stage.archive_file, '--prefix={0}'.format(prefix))
This will require a dependency on pip, as mentioned below.
^^^^^^^^^^^^^^^
Important files
^^^^^^^^^^^^^^^
Python packages can be identified by the presence of a ``setup.py`` file.
This file is used by package managers like ``pip`` to determine a
package's dependencies and the version of dependencies required, so if
the ``setup.py`` file is not accurate, the package will not build properly.
For this reason, the ``setup.py`` file should be fairly reliable. If the
documentation and ``setup.py`` disagree on something, the ``setup.py``
file should be considered to be the truth. As dependencies are added or
removed, the documentation is much more likely to become outdated than
the ``setup.py``.
The Python ecosystem has evolved significantly over the years. Before
setuptools became popular, most packages listed their dependencies in a
``requirements.txt`` file. Once setuptools took over, these dependencies
were listed directly in the ``setup.py``. Newer PEPs introduced additional
files, like ``setup.cfg`` and ``pyproject.toml``. You should look out for
all of these files, as they may all contain important information about
package dependencies.
Some Python packages are closed-source and are distributed as Python
wheels. For example, ``py-azureml-sdk`` downloads a ``.whl`` file. This
file is simply a zip file, and can be extracted using:
.. code-block:: console
$ unzip *.whl
The zip file will not contain a ``setup.py``, but it will contain a
``METADATA`` file which contains all the information you need to
write a ``package.py`` build recipe.
^^^^
PyPI
^^^^
The vast majority of Python packages are hosted on PyPI - The Python
Package Index. ``pip`` only supports packages hosted on PyPI, making
it the only option for developers who want a simple installation.
Search for "PyPI <package-name>" to find the download page. Note that
some pages are versioned, and the first result may not be the newest
version. Click on the "Latest Version" button to the top right to see
if a newer version is available. The download page is usually at::
https://pypi.org/project/<package-name>
Since PyPI is so common, the ``PythonPackage`` base class has a
``pypi`` attribute that can be set. Once set, ``pypi`` will be used
to define the ``homepage``, ``url``, and ``list_url``. For example,
the following:
.. code-block:: python
homepage = 'https://pypi.org/project/setuptools/'
url = 'https://pypi.org/packages/source/s/setuptools/setuptools-49.2.0.zip'
list_url = 'https://pypi.org/simple/setuptools/'
is equivalent to:
.. code-block:: python
pypi = 'setuptools/setuptools-49.2.0.zip'
^^^^^^^^^^^
Description
^^^^^^^^^^^
The top of the PyPI downloads page contains a description of the
package. The first line is usually a short description, while there
may be a several line "Project Description" that follows. Choose whichever
is more useful. You can also get these descriptions on the command-line
using:
.. code-block:: console
$ python setup.py --description
$ python setup.py --long-description
^^^^^^^^
Homepage
^^^^^^^^
Package developers use ``setup.py`` to upload new versions to PyPI.
The ``setup`` method often passes metadata like ``homepage`` to PyPI.
This metadata is displayed on the left side of the download page.
Search for the text "Homepage" under "Project links" to find it. You
should use this page instead of the PyPI page if they differ. You can
also get the homepage on the command-line by running:
.. code-block:: console
$ python setup.py --url
^^^
URL
^^^
If ``pypi`` is set as mentioned above, ``url`` and ``list_url`` will
be automatically set for you. If both ``.tar.gz`` and ``.zip`` versions
are available, ``.tar.gz`` is preferred. If some releases offer both
``.tar.gz`` and ``.zip`` versions, but some only offer ``.zip`` versions,
use ``.zip``.
Some Python packages are closed-source and do not ship ``.tar.gz`` or ``.zip``
files on either PyPI or GitHub. If this is the case, you can still download
and install a Python wheel. For example, ``py-azureml-sdk`` is closed source
and can be downloaded from::
https://pypi.io/packages/py3/a/azureml_sdk/azureml_sdk-1.11.0-py3-none-any.whl
You may see Python-specific or OS-specific URLs. Note that when you add a
``.whl`` URL, you should add ``expand=False`` to ensure that Spack doesn't
try to extract the wheel:
.. code-block:: python
version('1.11.0', sha256='d8c9d24ea90457214d798b0d922489863dad518adde3638e08ef62de28fb183a', expand=False)
.. _pypi-vs-github:
"""""""""""""""
PyPI vs. GitHub
"""""""""""""""
Many packages are hosted on PyPI, but are developed on GitHub or
another version control system hosting service. The source code can
be downloaded from either location, but PyPI is preferred for the
following reasons:
Many packages are hosted on PyPI, but are developed on GitHub or another
version control systems. The tarball can be downloaded from either
location, but PyPI is preferred for the following reasons:
#. PyPI contains the bare minimum number of files needed to install
the package.
#. PyPI contains the bare minimum number of files needed to install the package.
You may notice that the tarball you download from PyPI does not
have the same checksum as the tarball you download from GitHub.
@@ -133,124 +263,249 @@ following reasons:
PyPI is nice because it makes it physically impossible to
re-release the same version of a package with a different checksum.
The only reason to use GitHub instead of PyPI is if PyPI only has
wheels or if the PyPI sdist is missing a file needed to build the
package. If this is the case, please add a comment above the ``url``
explaining this.
^^^^^^^^^^^^^^^^^^^^^^^^^
Build system dependencies
^^^^^^^^^^^^^^^^^^^^^^^^^
^^^^
PyPI
^^^^
There are a few dependencies common to the ``PythonPackage`` build system.
Since PyPI is so commonly used to host Python libraries, the
``PythonPackage`` base class has a ``pypi`` attribute that can be
set. Once set, ``pypi`` will be used to define the ``homepage``,
``url``, and ``list_url``. For example, the following:
""""""
Python
""""""
Obviously, every ``PythonPackage`` needs Python at build-time to run
``python setup.py build && python setup.py install``. Python is also
needed at run-time if you want to import the module. Due to backwards
incompatible changes between Python 2 and 3, it is very important to
specify which versions of Python are supported. If the documentation
mentions that Python 3 is required, this can be specified as:
.. code-block:: python
homepage = 'https://pypi.org/project/setuptools/'
url = 'https://pypi.org/packages/source/s/setuptools/setuptools-49.2.0.zip'
list_url = 'https://pypi.org/simple/setuptools/'
depends_on('python@3:', type=('build', 'run'))
is equivalent to:
If Python 2 is required, this would look like:
.. code-block:: python
pypi = 'setuptools/setuptools-49.2.0.zip'
depends_on('python@:2', type=('build', 'run'))
If a package has a different homepage listed on PyPI, you can
override it by setting your own ``homepage``.
^^^^^^^^^^^
Description
^^^^^^^^^^^
The top of the PyPI project page contains a short description of the
package. The "Project description" tab may also contain a longer
description of the package. Either of these can be used to populate
the package docstring.
^^^^^^^^^^^^^
Build backend
^^^^^^^^^^^^^
Once you've determined the basic metadata for a package, the next
step is to determine the build backend. ``PythonPackage`` uses
`pip <https://pip.pypa.io/>`_ to install the package, but pip
requires a backend to actually build the package.
To determine the build backend, look for a ``pyproject.toml`` file.
If there is no ``pyproject.toml`` file and only a ``setup.py`` or
``setup.cfg`` file, you can assume that the project uses
:ref:`setuptools`. If there is a ``pyproject.toml`` file, see if it
contains a ``[build-system]`` section. For example:
.. code-block:: toml
[build-system]
requires = [
"setuptools>=42",
"wheel",
]
build-backend = "setuptools.build_meta"
This section does two things: the ``requires`` key lists build
dependencies of the project, and the ``build-backend`` key defines
the build backend. All of these build dependencies should be added as
dependencies to your package:
If Python 2.7 is the only version that works, you can use:
.. code-block:: python
depends_on('py-setuptools@42:', type='build')
depends_on('python@2.7:2.8', type=('build', 'run'))
Note that ``py-wheel`` is already listed as a build dependency in the
``PythonPackage`` base class, so you don't need to add it unless you
need to specify a specific version requirement or change the
dependency type.
The documentation may not always specify supported Python versions.
Another place to check is in the ``setup.py`` or ``setup.cfg`` file.
Look for a line containing ``python_requires``. An example from
`py-numpy <https://github.com/spack/spack/blob/develop/var/spack/repos/builtin/packages/py-numpy/package.py>`_
looks like:
See `PEP 517 <https://www.python.org/dev/peps/pep-0517/>`_ and
`PEP 518 <https://www.python.org/dev/peps/pep-0518/>`_ for more
information on the design of ``pyproject.toml``.
.. code-block:: python
Depending on which build backend a project uses, there are various
places that run-time dependencies can be listed.
python_requires='>=2.7,!=3.0.*,!=3.1.*,!=3.2.*,!=3.3.*'
"""""""""
distutils
"""""""""
Before the introduction of setuptools and other build backends,
Python packages had to rely on the built-in distutils library.
Distutils is missing many of the features that setuptools and other
build backends offer, and users are encouraged to use setuptools
instead. In fact, distutils was deprecated in Python 3.10 and will be
removed in Python 3.12. Because of this, pip actually replaces all
imports of distutils with setuptools. If a package uses distutils,
you should instead add a build dependency on setuptools. Check for a
``requirements.txt`` file that may list dependencies of the project.
You may also find a version check at the top of the ``setup.py``:
.. _setuptools:
.. code-block:: python
if sys.version_info[:2] < (2, 7) or (3, 0) <= sys.version_info[:2] < (3, 4):
raise RuntimeError("Python version 2.7 or >= 3.4 required.")
This can be converted to Spack's spec notation like so:
.. code-block:: python
depends_on('python@2.7:2.8,3.4:', type=('build', 'run'))
If you are writing a recipe for a package that only distributes
wheels, look for a section in the ``METADATA`` file that looks like::
Requires-Python: >=3.5,<4
This would be translated to:
.. code-block:: python
extends('python')
depends_on('python@3.5:3.999', type=('build', 'run'))
Many ``setup.py`` or ``setup.cfg`` files also contain information like::
Programming Language :: Python :: 2
Programming Language :: Python :: 2.6
Programming Language :: Python :: 2.7
Programming Language :: Python :: 3
Programming Language :: Python :: 3.3
Programming Language :: Python :: 3.4
Programming Language :: Python :: 3.5
Programming Language :: Python :: 3.6
This is a list of versions of Python that the developer likely tests.
However, you should not use this to restrict the versions of Python
the package uses unless one of the two former methods (``python_requires``
or ``sys.version_info``) is used. There is no logic in setuptools
that prevents the package from building for Python versions not in
this list, and often new releases like Python 3.7 or 3.8 work just fine.
""""""""""
setuptools
""""""""""
If the ``pyproject.toml`` lists ``setuptools.build_meta`` as a
``build-backend``, or if the package has a ``setup.py`` that imports
``setuptools``, or if the package has a ``setup.cfg`` file, then it
uses setuptools to build. Setuptools is a replacement for the
distutils library, and has almost the exact same API. Dependencies
can be listed in the ``setup.py`` or ``setup.cfg`` file. Look for the
following arguments:
Originally, the Python language had a single build system called
distutils, which is built into Python. Distutils provided a common
framework for package authors to describe their project and how it
should be built. However, distutils was not without limitations.
Most notably, there was no way to list a project's dependencies
with distutils. Along came setuptools, a non-builtin build system
designed to overcome the limitations of distutils. Both projects
use a similar API, making the transition easy while adding much
needed functionality. Today, setuptools is used in around 90% of
the Python packages in Spack.
Since setuptools isn't built-in to Python, you need to add it as a
dependency. To determine whether or not a package uses setuptools,
search the file for an import statement like:
.. code-block:: python
import setuptools
or:
.. code-block:: python
from setuptools import setup
Some packages are designed to work with both setuptools and distutils,
so you may find something like:
.. code-block:: python
try:
from setuptools import setup
except ImportError:
from distutils.core import setup
This uses setuptools if available, and falls back to distutils if not.
In this case, you would still want to add a setuptools dependency, as
it offers us more control over the installation.
Unless specified otherwise, setuptools is usually a build-only dependency.
That is, it is needed to install the software, but is not needed at
run-time. This can be specified as:
.. code-block:: python
depends_on('py-setuptools', type='build')
"""
pip
"""
Packages distributed as Python wheels will require an extra dependency
on pip:
.. code-block:: python
depends_on('py-pip', type='build')
We will use pip to install the actual wheel.
""""""
cython
""""""
Compared to compiled languages, interpreted languages like Python can
be quite a bit slower. To work around this, some Python developers
rewrite computationally demanding sections of code in C, a process
referred to as "cythonizing". In order to build these package, you
need to add a build dependency on cython:
.. code-block:: python
depends_on('py-cython', type='build')
Look for references to "cython" in the ``setup.py`` to determine
whether or not this is necessary. Cython may be optional, but
even then you should list it as a required dependency. Spack is
designed to compile software, and is meant for HPC facilities
where speed is crucial. There is no reason why someone would not
want an optimized version of a library instead of the pure-Python
version.
Note that some release tarballs come pre-cythonized, and cython is
not needed as a dependency. However, this is becoming less common
as Python continues to evolve and developers discover that cythonized
sources are no longer compatible with newer versions of Python and
need to be re-cythonized.
^^^^^^^^^^^^^^^^^^^
Python dependencies
^^^^^^^^^^^^^^^^^^^
When you install a package with ``pip``, it reads the ``setup.py``
file in order to determine the dependencies of the package.
If the dependencies are not yet installed, ``pip`` downloads them
and installs them for you. This may sound convenient, but Spack
cannot rely on this behavior for two reasons:
#. Spack needs to be able to install packages on air-gapped networks.
If there is no internet connection, ``pip`` can't download the
package dependencies. By explicitly listing every dependency in
the ``package.py``, Spack knows what to download ahead of time.
#. Duplicate installations of the same dependency may occur.
Spack supports *activation* of Python extensions, which involves
symlinking the package installation prefix to the Python installation
prefix. If your package is missing a dependency, that dependency
will be installed to the installation directory of the same package.
If you try to activate the package + dependency, it may cause a
problem if that package has already been activated.
For these reasons, you must always explicitly list all dependencies.
Although the documentation may list the package's dependencies,
often the developers assume people will use ``pip`` and won't have to
worry about it. Always check the ``setup.py`` to find the true
dependencies.
If the package relies on ``distutils``, it may not explicitly list its
dependencies. Check for statements like:
.. code-block:: python
try:
import numpy
except ImportError:
raise ImportError("numpy must be installed prior to installation")
Obviously, this means that ``py-numpy`` is a dependency.
If the package uses ``setuptools``, check for the following clues:
* ``python_requires``
This specifies the version of Python that is required.
As mentioned above, this specifies which versions of Python are
required.
* ``setup_requires``
@@ -262,88 +517,43 @@ following arguments:
These packages are required for building and installation. You can
add them with ``type=('build', 'run')``.
* ``extras_require``
* ``extra_requires``
These packages are optional dependencies that enable additional
functionality. You should add a variant that optionally adds these
dependencies. This variant should be False by default.
* ``tests_require``
* ``test_requires``
These are packages that are required to run the unit tests for the
package. These dependencies can be specified using the
``type='test'`` dependency type. However, the PyPI tarballs rarely
contain unit tests, so there is usually no reason to add these.
See https://setuptools.pypa.io/en/latest/userguide/dependency_management.html
for more information on how setuptools handles dependency management.
See `PEP 440 <https://www.python.org/dev/peps/pep-0440/#version-specifiers>`_
for documentation on version specifiers in setuptools.
In the root directory of the package, you may notice a
``requirements.txt`` file. It may look like this file contains a list
of all of the package's dependencies. Don't be fooled. This file is
used by tools like Travis to install the pre-requisites for the
package... and a whole bunch of other things. It often contains
dependencies only needed for unit tests, like:
""""
flit
""""
* mock
* nose
* pytest
There are actually two possible ``build-backend`` for flit, ``flit``
and ``flit_core``. If you see these in the ``pyproject.toml``, add a
build dependency to your package. With flit, all dependencies are
listed directly in the ``pyproject.toml`` file. Older versions of
flit used to store this info in a ``flit.ini`` file, so check for
this too.
It can also contain dependencies for building the documentation, like
sphinx. If you can't find any information about the package's
dependencies, you can take a look in ``requirements.txt``, but be sure
not to add test or documentation dependencies.
Either of these files may contain keys like:
Newer PEPs have added alternative ways to specify a package's dependencies.
If you don't see any dependencies listed in the ``setup.py``, look for a
``setup.cfg`` or ``pyproject.toml``. These files can be used to store the
same ``install_requires`` information that ``setup.py`` used to use.
* ``requires-python``
If you are write a recipe for a package that only distributes wheels,
check the ``METADATA`` file for lines like::
This specifies the version of Python that is required
* ``dependencies`` or ``requires``
These packages are required for building and installation. You can
add them with ``type=('build', 'run')``.
* ``project.optional-dependencies`` or ``requires-extra``
This section includes keys with lists of optional dependencies
needed to enable those features. You should add a variant that
optionally adds these dependencies. This variant should be False
by default.
See https://flit.readthedocs.io/en/latest/pyproject_toml.html for
more information.
""""""
poetry
""""""
Like flit, poetry also has two possible ``build-backend``, ``poetry``
and ``poetry_core``. If you see these in the ``pyproject.toml``, add
a build dependency to your package. With poetry, all dependencies are
listed directly in the ``pyproject.toml`` file. Dependencies are
listed in a ``[tool.poetry.dependencies]`` section, and use a
`custom syntax <https://python-poetry.org/docs/dependency-specification/#version-constraints>`_
for specifying the version requirements. Note that ``~=`` works
differently in poetry than in setuptools and flit for versions that
start with a zero.
""""""
wheels
""""""
Some Python packages are closed-source and are distributed as Python
wheels. For example, ``py-azureml-sdk`` downloads a ``.whl`` file. This
file is simply a zip file, and can be extracted using:
.. code-block:: console
$ unzip *.whl
The zip file will not contain a ``setup.py``, but it will contain a
``METADATA`` file which contains all the information you need to
write a ``package.py`` build recipe. Check for lines like::
Requires-Python: >=3.5,<4
Requires-Dist: azureml-core (~=1.11.0)
Requires-Dist: azureml-dataset-runtime[fuse] (~=1.11.0)
Requires-Dist: azureml-train (~=1.11.0)
@@ -355,58 +565,62 @@ write a ``package.py`` build recipe. Check for lines like::
Requires-Dist: azureml-train-automl (~=1.11.0); extra == 'automl'
``Requires-Python`` is equivalent to ``python_requires`` and
``Requires-Dist`` is equivalent to ``install_requires``.
``Provides-Extra`` is used to name optional features (variants) and
a ``Requires-Dist`` with ``extra == 'foo'`` will list any
dependencies needed for that feature.
Lines that use ``Requires-Dist`` are similar to ``install_requires``.
Lines that use ``Provides-Extra`` are similar to ``extra_requires``,
and you can add a variant for those dependencies. The ``~=1.11.0``
syntax is equivalent to ``1.11.0:1.11.999``.
""""""""""
setuptools
""""""""""
Setuptools is a bit of a special case. If a package requires setuptools
at run-time, how do they express this? They could add it to
``install_requires``, but setuptools is imported long before this and is
needed to read this line. And since you can't install the package
without setuptools, the developers assume that setuptools will already
be there, so they never mention when it is required. We don't want to
add run-time dependencies if they aren't needed, so you need to
determine whether or not setuptools is needed. Grep the installation
directory for any files containing a reference to ``setuptools`` or
``pkg_resources``. Both modules come from ``py-setuptools``.
``pkg_resources`` is particularly common in scripts found in
``prefix/bin``.
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
Passing arguments to setup.py
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
The default install phase should be sufficient to install most
packages. However, the installation instructions for a package may
suggest passing certain flags to the ``setup.py`` call. The
``PythonPackage`` class has two techniques for doing this.
The default build and install phases should be sufficient to install
most packages. However, you may want to pass additional flags to
either phase.
""""""""""""""
Global options
""""""""""""""
You can view the available options for a particular phase with:
These flags are added directly after ``setup.py`` when pip runs
``python setup.py install``. For example, the ``py-pyyaml`` package
has an optional dependency on ``libyaml`` that can be enabled like so:
.. code-block:: console
$ python setup.py <phase> --help
Each phase provides a ``<phase_args>`` function that can be used to
pass arguments to that phase. For example,
`py-numpy <https://github.com/spack/spack/blob/develop/var/spack/repos/builtin/packages/py-numpy/package.py>`_
adds:
.. code-block:: python
def global_options(self, spec, prefix):
options = []
if '+libyaml' in spec:
options.append('--with-libyaml')
else:
options.append('--without-libyaml')
return options
def build_args(self, spec, prefix):
args = []
# From NumPy 1.10.0 on it's possible to do a parallel build.
if self.version >= Version('1.10.0'):
# But Parallel build in Python 3.5+ is broken. See:
# https://github.com/spack/spack/issues/7927
# https://github.com/scipy/scipy/issues/7112
if spec['python'].version < Version('3.5'):
args = ['-j', str(make_jobs)]
"""""""""""""""
Install options
"""""""""""""""
These flags are added directly after ``install`` when pip runs
``python setup.py install``. For example, the ``py-pyyaml`` package
allows you to specify the directories to search for ``libyaml``:
.. code-block:: python
def install_options(self, spec, prefix):
options = []
if '+libyaml' in spec:
options.extend([
spec['libyaml'].libs.search_flags,
spec['libyaml'].headers.include_flags,
])
return options
return args
^^^^^^^
@@ -448,9 +662,9 @@ a "package" is a directory containing files like:
whereas a "module" is a single Python file.
The ``PythonPackage`` base class automatically detects these package
and module names for you. If, for whatever reason, the module names
detected are wrong, you can provide the names yourself by overriding
The ``PythonPackage`` base class automatically detects these module
names for you. If, for whatever reason, the module names detected
are wrong, you can provide the names yourself by overriding
``import_modules`` like so:
.. code-block:: python
@@ -471,8 +685,10 @@ This can be expressed like so:
@property
def import_modules(self):
modules = ['yaml']
if '+libyaml' in self.spec:
modules.append('yaml.cyaml')
return modules
@@ -490,10 +706,10 @@ Unit tests
""""""""""
The package may have its own unit or regression tests. Spack can
run these tests during the installation by adding test methods after
installation.
run these tests during the installation by adding phase-appropriate
test methods.
For example, ``py-numpy`` adds the following as a check to run
For example, ``py-numpy`` adds the following as a check to run
after the ``install`` phase:
.. code-block:: python
@@ -517,14 +733,34 @@ when testing is enabled during the installation (i.e., ``spack install
Setup file in a sub-directory
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
Many C/C++ libraries provide optional Python bindings in a
subdirectory. To tell pip which directory to build from, you can
override the ``build_directory`` attribute. For example, if a package
provides Python bindings in a ``python`` directory, you can use:
In order to be compatible with package managers like ``pip``, the package
is required to place its ``setup.py`` in the root of the tarball. However,
not every Python package cares about ``pip`` or PyPI. If you are installing
a package that is not hosted on PyPI, you may find that it places its
``setup.py`` in a sub-directory. To handle this, add the directory containing
``setup.py`` to the package like so:
.. code-block:: python
build_directory = 'python'
build_directory = 'source'
^^^^^^^^^^^^^^^^^^^^^^^^^^^^
Alternate names for setup.py
^^^^^^^^^^^^^^^^^^^^^^^^^^^^
As previously mentioned, packages need to call their setup script ``setup.py``
in order to be compatible with package managers like ``pip``. However, some
packages like
`py-meep <https://github.com/spack/spack/blob/develop/var/spack/repos/builtin/packages/py-meep/package.py>`_ and
`py-adios <https://github.com/spack/spack/blob/develop/var/spack/repos/builtin/packages/py-adios/package.py>`_
come with multiple setup scripts, one for a serial build and another for a
parallel build. You can override the default name to use like so:
.. code-block:: python
def setup_file(self):
return 'setup-mpi.py' if '+mpi' in self.spec else 'setup.py'
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
@@ -538,14 +774,10 @@ on Python are not necessarily ``PythonPackage``'s.
Choosing a build system
"""""""""""""""""""""""
First of all, you need to select a build system. ``spack create``
usually does this for you, but if for whatever reason you need to do
this manually, choose ``PythonPackage`` if and only if the package
contains one of the following files:
* ``pyproject.toml``
* ``setup.py``
* ``setup.cfg``
First of all, you need to select a build system. ``spack create`` usually
does this for you, but if for whatever reason you need to do this manually,
choose ``PythonPackage`` if and only if the package contains a ``setup.py``
file.
"""""""""""""""""""""""
Choosing a package name
@@ -618,9 +850,10 @@ having to add that module to ``PYTHONPATH``.
When deciding between ``extends`` and ``depends_on``, the best rule of
thumb is to check the installation prefix. If Python libraries are
installed to ``<prefix>/lib/pythonX.Y/site-packages``, then you
should use ``extends``. If Python libraries are installed elsewhere
or the only files that get installed reside in ``<prefix>/bin``, then
installed to ``prefix/lib/python2.7/site-packages`` (where 2.7 is the
MAJOR.MINOR version of Python you used to install the package), then
you should use ``extends``. If Python libraries are installed elsewhere
or the only files that get installed reside in ``prefix/bin``, then
don't use ``extends``, as symlinking the package wouldn't be useful.
^^^^^^^^^^^^^^^^^^^^^
@@ -645,24 +878,12 @@ are not yet in Spack, and Spack contains many Python packages that are
not yet in Anaconda. The main advantage of Spack over Anaconda is its
ability to choose a specific compiler and BLAS/LAPACK or MPI library.
Spack also has better platform support for supercomputers, and can build
optimized binaries for your specific microarchitecture.
optimized binaries for your specific microarchitecture. On the other hand,
Anaconda offers Windows support.
^^^^^^^^^^^^^^^^^^^^^^
External documentation
^^^^^^^^^^^^^^^^^^^^^^
For more information on Python packaging, see:
* https://packaging.python.org/
For more information on build and installation frontend tools, see:
* pip: https://pip.pypa.io/
* build: https://pypa-build.readthedocs.io/
* installer: https://installer.readthedocs.io/
For more information on build backend tools, see:
* setuptools: https://setuptools.pypa.io/
* flit: https://flit.readthedocs.io/
* poetry: https://python-poetry.org/
https://packaging.python.org/

View File

@@ -1,4 +1,4 @@
.. Copyright 2013-2022 Lawrence Livermore National Security, LLC and other
.. Copyright 2013-2021 Lawrence Livermore National Security, LLC and other
Spack Project Developers. See the top-level COPYRIGHT file for details.
SPDX-License-Identifier: (Apache-2.0 OR MIT)

View File

@@ -1,46 +0,0 @@
.. Copyright 2013-2021 Lawrence Livermore National Security, LLC and other
Spack Project Developers. See the top-level COPYRIGHT file for details.
SPDX-License-Identifier: (Apache-2.0 OR MIT)
.. _racketpackage:
-------------
RacketPackage
-------------
Much like Python, Racket packages and modules have their own special build system.
To learn more about the specifics of Racket package system, please refer to the
`Racket Docs <https://docs.racket-lang.org/pkg/cmdline.html>`_.
^^^^^^
Phases
^^^^^^
The ``RacketPackage`` base class provides an ``install`` phase that
can be overridden, corresponding to the use of:
.. code-block:: console
$ raco pkg install
^^^^^^^
Caveats
^^^^^^^
In principle, ``raco`` supports a second, ``setup`` phase; however, we have not
implemented this separately, as in normal circumstances, ``install`` also handles
running ``setup`` automatically.
Unlike Python, Racket currently on supports two installation scopes for packages, user
or system, and keeps a registry of installed packages at each scope in its configuration files.
This means we can't simply compose a "``RACKET_PATH``" environment variable listing all of the
places packages are installed, and update this at will.
Unfortunately this means that all currently installed packages which extend Racket via ``raco pkg install``
are accessible whenever Racket is accessible.
Additionally, because Spack does not implement uninstall hooks, uninstalling a Spack ``rkt-`` package
will have no effect on the ``raco`` installed packages visible to your Racket installation.
Instead, you must manually run ``raco pkg remove`` to keep the two package managers in a mutually
consistent state.

View File

@@ -1,4 +1,4 @@
.. Copyright 2013-2022 Lawrence Livermore National Security, LLC and other
.. Copyright 2013-2021 Lawrence Livermore National Security, LLC and other
Spack Project Developers. See the top-level COPYRIGHT file for details.
SPDX-License-Identifier: (Apache-2.0 OR MIT)

View File

@@ -1,4 +1,4 @@
.. Copyright 2013-2022 Lawrence Livermore National Security, LLC and other
.. Copyright 2013-2021 Lawrence Livermore National Security, LLC and other
Spack Project Developers. See the top-level COPYRIGHT file for details.
SPDX-License-Identifier: (Apache-2.0 OR MIT)

View File

@@ -1,4 +1,4 @@
.. Copyright 2013-2022 Lawrence Livermore National Security, LLC and other
.. Copyright 2013-2021 Lawrence Livermore National Security, LLC and other
Spack Project Developers. See the top-level COPYRIGHT file for details.
SPDX-License-Identifier: (Apache-2.0 OR MIT)

View File

@@ -1,4 +1,4 @@
.. Copyright 2013-2022 Lawrence Livermore National Security, LLC and other
.. Copyright 2013-2021 Lawrence Livermore National Security, LLC and other
Spack Project Developers. See the top-level COPYRIGHT file for details.
SPDX-License-Identifier: (Apache-2.0 OR MIT)

View File

@@ -1,4 +1,4 @@
.. Copyright 2013-2022 Lawrence Livermore National Security, LLC and other
.. Copyright 2013-2021 Lawrence Livermore National Security, LLC and other
Spack Project Developers. See the top-level COPYRIGHT file for details.
SPDX-License-Identifier: (Apache-2.0 OR MIT)

View File

@@ -1,4 +1,4 @@
.. Copyright 2013-2022 Lawrence Livermore National Security, LLC and other
.. Copyright 2013-2021 Lawrence Livermore National Security, LLC and other
Spack Project Developers. See the top-level COPYRIGHT file for details.
SPDX-License-Identifier: (Apache-2.0 OR MIT)

View File

@@ -1,4 +1,4 @@
.. Copyright 2013-2022 Lawrence Livermore National Security, LLC and other
.. Copyright 2013-2021 Lawrence Livermore National Security, LLC and other
Spack Project Developers. See the top-level COPYRIGHT file for details.
SPDX-License-Identifier: (Apache-2.0 OR MIT)

View File

@@ -1,4 +1,4 @@
# Copyright 2013-2022 Lawrence Livermore National Security, LLC and other
# Copyright 2013-2021 Lawrence Livermore National Security, LLC and other
# Spack Project Developers. See the top-level COPYRIGHT file for details.
#
# SPDX-License-Identifier: (Apache-2.0 OR MIT)
@@ -30,7 +30,6 @@
# add these directories to sys.path here. If the directory is relative to the
# documentation root, use os.path.abspath to make it absolute, like shown here.
sys.path.insert(0, os.path.abspath('_spack_root/lib/spack/external'))
sys.path.insert(0, os.path.abspath('_spack_root/lib/spack/external/pytest-fallback'))
if sys.version_info[0] < 3:
sys.path.insert(
@@ -180,7 +179,6 @@ def setup(sphinx):
('py:class', '_frozen_importlib_external.SourceFileLoader'),
# Spack classes that are private and we don't want to expose
('py:class', 'spack.provider_index._IndexBase'),
('py:class', 'spack.repo._PrependFileLoader'),
]
# The reST default role (used for this markup: `text`) to use for all documents.

View File

@@ -1,13 +1,13 @@
.. Copyright 2013-2022 Lawrence Livermore National Security, LLC and other
.. Copyright 2013-2021 Lawrence Livermore National Security, LLC and other
Spack Project Developers. See the top-level COPYRIGHT file for details.
SPDX-License-Identifier: (Apache-2.0 OR MIT)
.. _config-yaml:
============================
Spack Settings (config.yaml)
============================
==============
Basic Settings
==============
Spack's basic configuration options are set in ``config.yaml``. You can
see the default settings by looking at
@@ -72,6 +72,21 @@ used to configure module names.
packages have been installed will prevent Spack from being
able to find the old installation directories.
--------------------
``module_roots``
--------------------
Controls where Spack installs generated module files. You can customize
the location for each type of module. e.g.:
.. code-block:: yaml
module_roots:
tcl: $spack/share/spack/modules
lmod: $spack/share/spack/lmod
See :ref:`modules` for details.
--------------------
``build_stage``
--------------------
@@ -244,16 +259,3 @@ and ld.so will ONLY search for dependencies in the ``RUNPATH`` of
the loading object.
DO NOT MIX the two options within the same install tree.
----------------------
``terminal_title``
----------------------
By setting this option to ``true``, Spack will update the terminal's title to
provide information about its current progress as well as the current and
total package numbers.
To work properly, this requires your terminal to reset its title after
Spack has finished its work, otherwise Spack's status information will
remain in the terminal's title indefinitely. Most terminals should already
be set up this way and clear Spack's status information.

View File

@@ -1,4 +1,4 @@
.. Copyright 2013-2022 Lawrence Livermore National Security, LLC and other
.. Copyright 2013-2021 Lawrence Livermore National Security, LLC and other
Spack Project Developers. See the top-level COPYRIGHT file for details.
SPDX-License-Identifier: (Apache-2.0 OR MIT)
@@ -13,16 +13,12 @@ Spack has many configuration files. Here is a quick list of them, in
case you want to skip directly to specific docs:
* :ref:`compilers.yaml <compiler-config>`
* :ref:`concretizer.yaml <concretizer-options>`
* :ref:`config.yaml <config-yaml>`
* :ref:`mirrors.yaml <mirrors>`
* :ref:`modules.yaml <modules>`
* :ref:`packages.yaml <build-settings>`
* :ref:`repos.yaml <repositories>`
You can also add any of these as inline configuration in ``spack.yaml``
in an :ref:`environment <environment-configuration>`.
-----------
YAML Format
-----------
@@ -37,6 +33,8 @@ Here is an example ``config.yaml`` file:
config:
install_tree: $spack/opt/spack
module_roots:
lmod: $spack/share/spack/lmod
build_stage:
- $tempdir/$user/spack-stage
- ~/.spack/stage
@@ -251,6 +249,8 @@ your configurations look like this:
config:
install_tree: $spack/opt/spack
module_roots:
lmod: $spack/share/spack/lmod
build_stage:
- $tempdir/$user/spack-stage
- ~/.spack/stage
@@ -274,6 +274,8 @@ command:
$ spack config get config
config:
install_tree: /some/other/directory
module_roots:
lmod: $spack/share/spack/lmod
build_stage:
- $tempdir/$user/spack-stage
- ~/.spack/stage
@@ -339,11 +341,13 @@ higher-precedence scope is *prepended* to the defaults. ``spack config
get config`` shows the result:
.. code-block:: console
:emphasize-lines: 5-8
:emphasize-lines: 7-10
$ spack config get config
config:
install_tree: /some/other/directory
module_roots:
lmod: $spack/share/spack/lmod
build_stage:
- /lustre-scratch/$user/spack
- ~/mystage
@@ -367,11 +371,13 @@ user config looked like this:
The merged configuration would look like this:
.. code-block:: console
:emphasize-lines: 5-6
:emphasize-lines: 7-8
$ spack config get config
config:
install_tree: /some/other/directory
module_roots:
lmod: $spack/share/spack/lmod
build_stage:
- /lustre-scratch/$user/spack
- ~/mystage
@@ -396,15 +402,12 @@ Spack-specific variables
Spack understands several special variables. These are:
* ``$env``: name of the currently active :ref:`environment <environments>`
* ``$spack``: path to the prefix of this Spack installation
* ``$tempdir``: default system temporary directory (as specified in
Python's `tempfile.tempdir
<https://docs.python.org/2/library/tempfile.html#tempfile.tempdir>`_
variable.
* ``$user``: name of the current user
* ``$user_cache_path``: user cache directory (``~/.spack`` unless
:ref:`overridden <local-config-overrides>`)
Note that, as with shell variables, you can write these as ``$varname``
or with braces to distinguish the variable from surrounding characters:
@@ -492,6 +495,9 @@ account all scopes. For example, to see the fully merged
template_dirs:
- $spack/templates
directory_layout: {architecture}/{compiler.name}-{compiler.version}/{name}-{version}-{hash}
module_roots:
tcl: $spack/share/spack/modules
lmod: $spack/share/spack/lmod
build_stage:
- $tempdir/$user/spack-stage
- ~/.spack/stage
@@ -539,6 +545,9 @@ down the problem:
/home/myuser/spack/etc/spack/defaults/config.yaml:23 template_dirs:
/home/myuser/spack/etc/spack/defaults/config.yaml:24 - $spack/templates
/home/myuser/spack/etc/spack/defaults/config.yaml:28 directory_layout: {architecture}/{compiler.name}-{compiler.version}/{name}-{version}-{hash}
/home/myuser/spack/etc/spack/defaults/config.yaml:32 module_roots:
/home/myuser/spack/etc/spack/defaults/config.yaml:33 tcl: $spack/share/spack/modules
/home/myuser/spack/etc/spack/defaults/config.yaml:34 lmod: $spack/share/spack/lmod
/home/myuser/spack/etc/spack/defaults/config.yaml:49 build_stage:
/home/myuser/spack/etc/spack/defaults/config.yaml:50 - $tempdir/$user/spack-stage
/home/myuser/spack/etc/spack/defaults/config.yaml:51 - ~/.spack/stage
@@ -553,39 +562,3 @@ built in and are not overridden by a configuration file. The
command line. ``dirty`` and ``install_tree`` come from the custom
scopes ``./my-scope`` and ``./my-scope-2``, and all other configuration
options come from the default configuration files that ship with Spack.
.. _local-config-overrides:
------------------------------
Overriding Local Configuration
------------------------------
Spack's ``system`` and ``user`` scopes provide ways for administrators and users to set
global defaults for all Spack instances, but for use cases where one wants a clean Spack
installation, these scopes can be undesirable. For example, users may want to opt out of
global system configuration, or they may want to ignore their own home directory
settings when running in a continuous integration environment.
Spack also, by default, keeps various caches and user data in ``~/.spack``, but
users may want to override these locations.
Spack provides three environment variables that allow you to override or opt out of
configuration locations:
* ``SPACK_USER_CONFIG_PATH``: Override the path to use for the
``user`` scope (``~/.spack`` by default).
* ``SPACK_SYSTEM_CONFIG_PATH``: Override the path to use for the
``system`` scope (``/etc/spack`` by default).
* ``SPACK_DISABLE_LOCAL_CONFIG``: set this environment variable to completely disable
**both** the system and user configuration directories. Spack will only consider its
own defaults and ``site`` configuration locations.
And one that allows you to move the default cache location:
* ``SPACK_USER_CACHE_PATH``: Override the default path to use for user data
(misc_cache, tests, reports, etc.)
With these settings, if you want to isolate Spack in a CI environment, you can do this::
export SPACK_DISABLE_LOCAL_CONFIG=true
export SPACK_USER_CACHE_PATH=/tmp/spack

View File

@@ -1,4 +1,4 @@
.. Copyright 2013-2022 Lawrence Livermore National Security, LLC and other
.. Copyright 2013-2021 Lawrence Livermore National Security, LLC and other
Spack Project Developers. See the top-level COPYRIGHT file for details.
SPDX-License-Identifier: (Apache-2.0 OR MIT)
@@ -126,12 +126,12 @@ are currently supported are summarized in the table below:
* - Ubuntu 18.04
- ``ubuntu:18.04``
- ``spack/ubuntu-bionic``
* - CentOS 6
- ``centos:6``
- ``spack/centos6``
* - CentOS 7
- ``centos:7``
- ``spack/centos7``
* - openSUSE Leap
- ``opensuse/leap``
- ``spack/leap15``
All the images are tagged with the corresponding release of Spack:
@@ -200,7 +200,7 @@ Setting Base Images
The ``images`` subsection is used to select both the image where
Spack builds the software and the image where the built software
is installed. This attribute can be set in different ways and
is installed. This attribute can be set in two different ways and
which one to use depends on the use case at hand.
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
@@ -260,54 +260,10 @@ software is respectively built and installed:
ENTRYPOINT ["/bin/bash", "--rcfile", "/etc/profile", "-l"]
This is the simplest available method of selecting base images, and we advise
This method of selecting base images is the simplest of the two, and we advise
to use it whenever possible. There are cases though where using Spack official
images is not enough to fit production needs. In these situations users can
extend the recipe to start with the bootstrapping of Spack at a certain pinned
version or manually select which base image to start from in the recipe,
as we'll see next.
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
Use a Bootstrap Stage for Spack
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
In some cases users may want to pin the commit sha that is used for Spack, to ensure later
reproducibility, or start from a fork of the official Spack repository to try a bugfix or
a feature in the early stage of development. This is possible by being just a little more
verbose when specifying information about Spack in the ``spack.yaml`` file:
.. code-block:: yaml
images:
os: amazonlinux:2
spack:
# URL of the Spack repository to be used in the container image
url: <to-use-a-fork>
# Either a commit sha, a branch name or a tag
ref: <sha/tag/branch>
# If true turn a branch name or a tag into the corresponding commit
# sha at the time of recipe generation
resolve_sha: <true/false>
``url`` specifies the URL from which to clone Spack and defaults to https://github.com/spack/spack.
The ``ref`` attribute can be either a commit sha, a branch name or a tag. The default value in
this case is to use the ``develop`` branch, but it may change in the future to point to the latest stable
release. Finally ``resolve_sha`` transform branch names or tags into the corresponding commit
shas at the time of recipe generation, to allow for a greater reproducibility of the results
at a later time.
The list of operating systems that can be used to bootstrap Spack can be
obtained with:
.. command-output:: spack containerize --list-os
.. note::
The ``resolve_sha`` option uses ``git rev-parse`` under the hood and thus it requires
to checkout the corresponding Spack repository in a temporary folder before generating
the recipe. Recipe generation may take longer when this option is set to true because
of this additional step.
images is not enough to fit production needs. In these situations users can manually
select which base image to start from in the recipe, as we'll see next.
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
Use Custom Images Provided by Users
@@ -459,18 +415,6 @@ to customize the generation of container recipes:
- Version of Spack use in the ``build`` stage
- Valid tags for ``base:image``
- Yes, if using constrained selection of base images
* - ``images:spack:url``
- Repository from which Spack is cloned
- Any fork of Spack
- No
* - ``images:spack:ref``
- Reference for the checkout of Spack
- Either a commit sha, a branch name or a tag
- No
* - ``images:spack:resolve_sha``
- Resolve branches and tags in ``spack.yaml`` to commits in the generated recipe
- True or False (default: False)
- No
* - ``images:build``
- Image to be used in the ``build`` stage
- Any valid container image

View File

@@ -1,4 +1,4 @@
.. Copyright 2013-2022 Lawrence Livermore National Security, LLC and other
.. Copyright 2013-2021 Lawrence Livermore National Security, LLC and other
Spack Project Developers. See the top-level COPYRIGHT file for details.
SPDX-License-Identifier: (Apache-2.0 OR MIT)
@@ -71,7 +71,7 @@ locally to speed up the review process.
new release that is causing problems. If this is the case, please file an issue.
We currently test against Python 2.7 and 3.5-3.9 on both macOS and Linux and
We currently test against Python 2.6, 2.7, and 3.5-3.7 on both macOS and Linux and
perform 3 types of tests:
.. _cmd-spack-unit-test:
@@ -338,6 +338,15 @@ Once all of the dependencies are installed, you can try building the documentati
If you see any warning or error messages, you will have to correct those before
your PR is accepted.
.. note::
There is also a ``run-doc-tests`` script in ``share/spack/qa``. The only
difference between running this script and running ``make`` by hand is that
the script will exit immediately if it encounters an error or warning. This
is necessary for CI. If you made a lot of documentation changes, it is
much quicker to run ``make`` by hand so that you can see all of the warnings
at once.
If you are editing the documentation, you should obviously be running the
documentation tests. But even if you are simply adding a new package, your
changes could cause the documentation tests to fail:

View File

@@ -1,4 +1,4 @@
.. Copyright 2013-2022 Lawrence Livermore National Security, LLC and other
.. Copyright 2013-2021 Lawrence Livermore National Security, LLC and other
Spack Project Developers. See the top-level COPYRIGHT file for details.
SPDX-License-Identifier: (Apache-2.0 OR MIT)
@@ -210,6 +210,15 @@ Spec-related modules
but compilers aren't fully integrated with the build process
yet.
:mod:`spack.architecture`
:func:`architecture.default_arch <spack.architecture.default_arch>` is used
to determine the host architecture while building.
.. warning::
Not yet implemented. Should eventually have architecture
descriptions for cross-compiling.
^^^^^^^^^^^^^^^^^
Build environment
^^^^^^^^^^^^^^^^^
@@ -671,13 +680,6 @@ If you need to write a hook that is relevant to a failure within a build
process, you would want to instead use ``on_phase_failure``.
"""""""""""""""""""""""""""
``on_install_cancel(spec)``
"""""""""""""""""""""""""""
The same, but triggered if a spec install is cancelled for any reason.
"""""""""""""""""""""""""""""""""""""""""""""""
``on_phase_success(pkg, phase_name, log_file)``
"""""""""""""""""""""""""""""""""""""""""""""""
@@ -1057,39 +1059,39 @@ Release branches
^^^^^^^^^^^^^^^^
There are currently two types of Spack releases: :ref:`major releases
<major-releases>` (``0.17.0``, ``0.18.0``, etc.) and :ref:`point releases
<point-releases>` (``0.17.1``, ``0.17.2``, ``0.17.3``, etc.). Here is a
<major-releases>` (``0.13.0``, ``0.14.0``, etc.) and :ref:`point releases
<point-releases>` (``0.13.1``, ``0.13.2``, ``0.13.3``, etc.). Here is a
diagram of how Spack release branches work::
o branch: develop (latest version, v0.19.0.dev0)
o branch: develop (latest version)
|
o
| o branch: releases/v0.18, tag: v0.18.1
o |
| o tag: v0.18.0
o |
| o
o merge v0.14.1 into develop
|\
| o branch: releases/v0.14, tag: v0.14.1
o | merge v0.14.0 into develop
|\|
| o tag: v0.14.0
|/
o
|
o
| o branch: releases/v0.17, tag: v0.17.2
o |
| o tag: v0.17.1
o |
| o tag: v0.17.0
o merge v0.13.2 into develop
|\
| o branch: releases/v0.13, tag: v0.13.2
o | merge v0.13.1 into develop
|\|
| o tag: v0.13.1
o | merge v0.13.0 into develop
|\|
| o tag: v0.13.0
o |
| o
|/
o
The ``develop`` branch has the latest contributions, and nearly all pull
requests target ``develop``. The ``develop`` branch will report that its
version is that of the next **major** release with a ``.dev0`` suffix.
requests target ``develop``.
Each Spack release series also has a corresponding branch, e.g.
``releases/v0.18`` has ``0.18.x`` versions of Spack, and
``releases/v0.17`` has ``0.17.x`` versions. A major release is the first
``releases/v0.14`` has ``0.14.x`` versions of Spack, and
``releases/v0.13`` has ``0.13.x`` versions. A major release is the first
tagged version on a release branch. Minor releases are back-ported from
develop onto release branches. This is typically done by cherry-picking
bugfix commits off of ``develop``.
@@ -1100,20 +1102,12 @@ packages. They should generally only contain fixes to the Spack core.
However, sometimes priorities are such that new functionality needs to
be added to a minor release.
Both major and minor releases are tagged. As a convenience, we also tag
the latest release as ``releases/latest``, so that users can easily check
it out to get the latest stable version. See :ref:`updating-latest-release`
for more details.
.. note::
Older spack releases were merged **back** into develop so that we could
do fancy things with tags, but since tarballs and many git checkouts do
not have tags, this proved overly complex and confusing.
We have since converted to using `PEP 440 <https://peps.python.org/pep-0440/>`_
compliant versions. `See here <https://github.com/spack/spack/pull/25267>`_ for
details.
Both major and minor releases are tagged. After each release, we merge
the release branch back into ``develop`` so that the version bump and any
other release-specific changes are visible in the mainline. As a
convenience, we also tag the latest release as ``releases/latest``,
so that users can easily check it out to get the latest
stable version. See :ref:`merging-releases` for more details.
^^^^^^^^^^^^^^^^^^^^^^^^^^^^
Scheduling work for releases
@@ -1171,11 +1165,10 @@ completed, the steps to make the major release are:
``releases/vX.Y``. That is, you should create a ``releases/vX.Y``
branch if you are preparing the ``X.Y.0`` release.
#. Remove the ``dev0`` development release segment from the version tuple in
``lib/spack/spack/__init__.py``.
#. Bump the version in ``lib/spack/spack/__init__.py``.
The version number itself should already be correct and should not be
modified.
See `this example from 0.13.0
<https://github.com/spack/spack/commit/8eeb64096c98b8a43d1c587f13ece743c864fba9>`_
#. Update ``CHANGELOG.md`` with major highlights in bullet form.
@@ -1193,20 +1186,9 @@ completed, the steps to make the major release are:
If CI is not passing, submit pull requests to ``develop`` as normal
and keep rebasing the release branch on ``develop`` until CI passes.
#. Make sure the entire documentation is up to date. If documentation
is outdated submit pull requests to ``develop`` as normal
and keep rebasing the release branch on ``develop``.
#. Bump the major version in the ``develop`` branch.
Create a pull request targeting the ``develop`` branch, bumping the major
version in ``lib/spack/spack/__init__.py`` with a ``dev0`` release segment.
For instance when you have just released ``v0.15.0``, set the version
to ``(0, 16, 0, 'dev0')`` on ``develop``.
#. Follow the steps in :ref:`publishing-releases`.
#. Follow the steps in :ref:`updating-latest-release`.
#. Follow the steps in :ref:`merging-releases`.
#. Follow the steps in :ref:`announcing-releases`.
@@ -1282,6 +1264,9 @@ completed, the steps to make the point release are:
#. Bump the version in ``lib/spack/spack/__init__.py``.
See `this example from 0.14.1
<https://github.com/spack/spack/commit/ff0abb9838121522321df2a054d18e54b566b44a>`_.
#. Update ``CHANGELOG.md`` with a list of the changes.
This is typically a summary of the commits you cherry-picked onto the
@@ -1303,7 +1288,7 @@ completed, the steps to make the point release are:
#. Follow the steps in :ref:`publishing-releases`.
#. Follow the steps in :ref:`updating-latest-release`.
#. Follow the steps in :ref:`merging-releases`.
#. Follow the steps in :ref:`announcing-releases`.
@@ -1364,11 +1349,11 @@ Publishing a release on GitHub
selectable in the versions menu.
.. _updating-latest-release:
.. _merging-releases:
^^^^^^^^^^^^^^^^^^^^^^^^^^
Updating `releases/latest`
^^^^^^^^^^^^^^^^^^^^^^^^^^
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
Updating `releases/latest` and `develop`
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
If the new release is the **highest** Spack release yet, you should
also tag it as ``releases/latest``. For example, suppose the highest
@@ -1392,6 +1377,40 @@ To tag ``releases/latest``, do this:
The ``--force`` argument to ``git tag`` makes ``git`` overwrite the existing
``releases/latest`` tag with the new one.
We also merge each release that we tag as ``releases/latest`` into ``develop``.
Make sure to do this with a merge commit:
.. code-block:: console
$ git checkout develop
$ git merge --no-ff -s ours vX.Y.Z # vX.Y.Z is the new release's tag
$ git push
We merge back to ``develop`` because it:
* updates the version and ``CHANGELOG.md`` on ``develop``; and
* ensures that your release tag is reachable from the head of
``develop``.
We *must* use a real merge commit (via the ``--no-ff`` option) to
ensure that the release tag is reachable from the tip of ``develop``.
This is necessary for ``spack -V`` to work properly -- it uses ``git
describe --tags`` to find the last reachable tag in the repository and
reports how far we are from it. For example:
.. code-block:: console
$ spack -V
0.14.2-1486-b80d5e74e5
This says that we are at commit ``b80d5e74e5``, which is 1,486 commits
ahead of the ``0.14.2`` release.
We put this step last in the process because it's best to do it only once
the release is complete and tagged. If you do it before you've tagged the
release and later decide you want to tag some later commit, you'll need
to merge again.
.. _announcing-releases:

View File

@@ -1,13 +1,13 @@
.. Copyright 2013-2022 Lawrence Livermore National Security, LLC and other
.. Copyright 2013-2021 Lawrence Livermore National Security, LLC and other
Spack Project Developers. See the top-level COPYRIGHT file for details.
SPDX-License-Identifier: (Apache-2.0 OR MIT)
.. _environments:
=========================
Environments (spack.yaml)
=========================
============
Environments
============
An environment is used to group together a set of specs for the
purpose of building, rebuilding and deploying in a coherent fashion.
@@ -384,11 +384,18 @@ Sourcing that file in Bash will make the environment available to the
user; and can be included in ``.bashrc`` files, etc. The ``loads``
file may also be copied out of the environment, renamed, etc.
----------
spack.yaml
----------
Spack environments can be customized at finer granularity by editing
the ``spack.yaml`` manifest file directly.
.. _environment-configuration:
------------------------
^^^^^^^^^^^^^^^^^^^^^^^^
Configuring Environments
------------------------
^^^^^^^^^^^^^^^^^^^^^^^^
A variety of Spack behaviors are changed through Spack configuration
files, covered in more detail in the :ref:`configuration`
@@ -410,9 +417,9 @@ environment can be specified by ``env:NAME`` (to affect environment
``foo``, set ``--scope env:foo``). These commands will automatically
manipulate configuration inline in the ``spack.yaml`` file.
^^^^^^^^^^^^^^^^^^^^^
"""""""""""""""""""""
Inline configurations
^^^^^^^^^^^^^^^^^^^^^
"""""""""""""""""""""
Inline Environment-scope configuration is done using the same yaml
format as standard Spack configuration scopes, covered in the
@@ -433,9 +440,9 @@ a ``packages.yaml`` file) could contain:
This configuration sets the default compiler for all packages to
``intel``.
^^^^^^^^^^^^^^^^^^^^^^^
"""""""""""""""""""""""
Included configurations
^^^^^^^^^^^^^^^^^^^^^^^
"""""""""""""""""""""""
Spack environments allow an ``include`` heading in their yaml
schema. This heading pulls in external configuration files and applies
@@ -455,9 +462,9 @@ to make small changes to an individual Environment. Included configs
listed earlier will have higher precedence, as the included configs are
applied in reverse order.
-------------------------------
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
Manually Editing the Specs List
-------------------------------
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
The list of abstract/root specs in the Environment is maintained in
the ``spack.yaml`` manifest under the heading ``specs``.
@@ -475,9 +482,9 @@ Appending to this list in the yaml is identical to using the ``spack
add`` command from the command line. However, there is more power
available from the yaml file.
^^^^^^^^^^^^^^^^^^^
"""""""""""""""""""
Spec concretization
^^^^^^^^^^^^^^^^^^^
"""""""""""""""""""
Specs can be concretized separately or together, as already
explained in :ref:`environments_concretization`. The behavior active
@@ -503,9 +510,9 @@ which can currently take either one of the two allowed values ``together`` or ``
the environment remains consistent. When instead the specs are concretized
separately only the new specs will be re-concretized after any addition.
^^^^^^^^^^^^^
"""""""""""""
Spec Matrices
^^^^^^^^^^^^^
"""""""""""""
Entries in the ``specs`` list can be individual abstract specs or a
spec matrix.
@@ -565,9 +572,9 @@ This allows one to create toolchains out of combinations of
constraints and apply them somewhat indiscriminately to packages,
without regard for the applicability of the constraint.
^^^^^^^^^^^^^^^^^^^^
""""""""""""""""""""
Spec List References
^^^^^^^^^^^^^^^^^^^^
""""""""""""""""""""
The last type of possible entry in the specs list is a reference.
@@ -667,9 +674,9 @@ The valid variables for a ``when`` clause are:
#. ``hostname``. The hostname of the system (if ``hostname`` is an
executable in the user's PATH).
^^^^^^^^^^^^^^^^^^^^^^^^
""""""""""""""""""""""""
SpecLists as Constraints
^^^^^^^^^^^^^^^^^^^^^^^^
""""""""""""""""""""""""
Dependencies and compilers in Spack can be both packages in an
environment and constraints on other packages. References to SpecLists
@@ -701,41 +708,41 @@ For example, the following environment has three root packages:
This allows for a much-needed reduction in redundancy between packages
and constraints.
----------------
Filesystem Views
----------------
^^^^^^^^^^^^^^^^^^^^^^^^^
Environment-managed Views
^^^^^^^^^^^^^^^^^^^^^^^^^
Spack Environments can define filesystem views, which provide a direct access point
for software similar to the directory hierarchy that might exist under ``/usr/local``.
Filesystem views are updated every time the environment is written out to the lock
file ``spack.lock``, so the concrete environment and the view are always compatible.
The files of the view's installed packages are brought into the view by symbolic or
hard links, referencing the original Spack installation, or by copy.
Spack Environments can define filesystem views of their software,
which are maintained as packages and can be installed and uninstalled from
the Environment. Filesystem views provide an access point for packages
from the filesystem for users who want to access those packages
directly. For more information on filesystem views, see the section
:ref:`filesystem-views`.
Spack Environment managed views are updated every time the environment
is written out to the lock file ``spack.lock``, so the concrete
environment and the view are always compatible.
.. _configuring_environment_views:
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
Configuration in ``spack.yaml``
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
"""""""""""""""""""""""""""""
Configuring environment views
"""""""""""""""""""""""""""""
The Spack Environment manifest file has a top-level keyword
``view``. Each entry under that heading is a **view descriptor**, headed
by a name. Any number of views may be defined under the ``view`` heading.
The view descriptor contains the root of the view, and
``view``. Each entry under that heading is a view descriptor, headed
by a name. The view descriptor contains the root of the view, and
optionally the projections for the view, ``select`` and
``exclude`` lists for the view and link information via ``link`` and
``link_type``.
For example, in the following manifest
``link_type``. For example, in the following manifest
file snippet we define a view named ``mpis``, rooted at
``/path/to/view`` in which all projections use the package name,
version, and compiler name to determine the path for a given
package. This view selects all packages that depend on MPI, and
excludes those built with the PGI compiler at version 18.5.
The root specs with their (transitive) link and run type dependencies
will be put in the view due to the ``link: all`` option,
and the files in the view will be symlinks to the spack install
directories.
All the dependencies of each root spec in the environment will be linked
in the view due to the command ``link: all`` and the files in the view will
be symlinks to the spack install directories.
.. code-block:: yaml
@@ -751,26 +758,16 @@ directories.
link: all
link_type: symlink
The default for the ``select`` and
For more information on using view projections, see the section on
:ref:`adding_projections_to_views`. The default for the ``select`` and
``exclude`` values is to select everything and exclude nothing. The
default projection is the default view projection (``{}``). The ``link``
attribute allows the following values:
#. ``link: all`` include root specs with their transitive run and link type
dependencies (default);
#. ``link: run`` include root specs with their transitive run type dependencies;
#. ``link: roots`` include root specs without their dependencies.
The ``link_type`` defaults to ``symlink`` but can also take the value
of ``hardlink`` or ``copy``.
.. tip::
The option ``link: run`` can be used to create small environment views for
Python packages. Python will be able to import packages *inside* of the view even
when the environment is not activated, and linked libraries will be located
*outside* of the view thanks to rpaths.
defaults to ``all`` but can also be ``roots`` when only the root specs
in the environment are desired in the view. The ``link_type`` defaults
to ``symlink`` but can also take the value of ``hardlink`` or ``copy``.
Any number of views may be defined under the ``view`` heading in a
Spack Environment.
There are two shorthands for environments with a single view. If the
environment at ``/path/to/env`` has a single view, with a root at
@@ -836,47 +833,9 @@ regenerate`` will regenerate the views for the environment. This will
apply any updates in the environment configuration that have not yet
been applied.
.. _view_projections:
""""""""""""""""
View Projections
""""""""""""""""
The default projection into a view is to link every package into the
root of the view. The projections attribute is a mapping of partial specs to
spec format strings, defined by the :meth:`~spack.spec.Spec.format`
function, as shown in the example below:
.. code-block:: yaml
projections:
zlib: {name}-{version}
^mpi: {name}-{version}/{^mpi.name}-{^mpi.version}-{compiler.name}-{compiler.version}
all: {name}-{version}/{compiler.name}-{compiler.version}
The entries in the projections configuration file must all be either
specs or the keyword ``all``. For each spec, the projection used will
be the first non-``all`` entry that the spec satisfies, or ``all`` if
there is an entry for ``all`` and no other entry is satisfied by the
spec. Where the keyword ``all`` appears in the file does not
matter.
Given the example above, the spec ``zlib@1.2.8``
will be linked into ``/my/view/zlib-1.2.8/``, the spec
``hdf5@1.8.10+mpi %gcc@4.9.3 ^mvapich2@2.2`` will be linked into
``/my/view/hdf5-1.8.10/mvapich2-2.2-gcc-4.9.3``, and the spec
``hdf5@1.8.10~mpi %gcc@4.9.3`` will be linked into
``/my/view/hdf5-1.8.10/gcc-4.9.3``.
If the keyword ``all`` does not appear in the projections
configuration file, any spec that does not satisfy any entry in the
file will be linked into the root of the view as in a single-prefix
view. Any entries that appear below the keyword ``all`` in the
projections configuration file will not be used, as all specs will use
the projection under ``all`` before reaching those entries.
^^^^^^^^^^^^^^^^^^^^^^^^^^^^
""""""""""""""""""""""""""""
Activating environment views
^^^^^^^^^^^^^^^^^^^^^^^^^^^^
""""""""""""""""""""""""""""
The ``spack env activate`` command will put the default view for the
environment into the user's path, in addition to activating the

View File

@@ -1,4 +1,4 @@
.. Copyright 2013-2022 Lawrence Livermore National Security, LLC and other
.. Copyright 2013-2021 Lawrence Livermore National Security, LLC and other
Spack Project Developers. See the top-level COPYRIGHT file for details.
SPDX-License-Identifier: (Apache-2.0 OR MIT)
@@ -38,7 +38,8 @@ obtained by cloning the corresponding git repository:
.. code-block:: console
$ cd ~/
$ pwd
/home/user
$ mkdir tmp && cd tmp
$ git clone https://github.com/alalazo/spack-scripting.git
Cloning into 'spack-scripting'...
@@ -61,7 +62,7 @@ paths to ``config.yaml``. In the case of our example this means ensuring that:
config:
extensions:
- ~/tmp/spack-scripting
- /home/user/tmp/spack-scripting
is part of your configuration file. Once this is setup any command that the extension provides
will be available from the command line:

View File

@@ -1,4 +1,4 @@
.. Copyright 2013-2022 Lawrence Livermore National Security, LLC and other
.. Copyright 2013-2021 Lawrence Livermore National Security, LLC and other
Spack Project Developers. See the top-level COPYRIGHT file for details.
SPDX-License-Identifier: (Apache-2.0 OR MIT)

View File

@@ -1,4 +1,4 @@
.. Copyright 2013-2022 Lawrence Livermore National Security, LLC and other
.. Copyright 2013-2021 Lawrence Livermore National Security, LLC and other
Spack Project Developers. See the top-level COPYRIGHT file for details.
SPDX-License-Identifier: (Apache-2.0 OR MIT)
@@ -35,7 +35,7 @@ Getting Spack is easy. You can clone it from the `github repository
.. code-block:: console
$ git clone -c feature.manyFiles=true https://github.com/spack/spack.git
$ git clone https://github.com/spack/spack.git
This will create a directory called ``spack``.
@@ -88,89 +88,91 @@ the environment.
Bootstrapping clingo
^^^^^^^^^^^^^^^^^^^^
Spack uses ``clingo`` under the hood to resolve optimal versions and variants of
dependencies when installing a package. Since ``clingo`` itself is a binary,
Spack has to install it on initial use, which is called bootstrapping.
Spack provides two ways of bootstrapping ``clingo``: from pre-built binaries
(default), or from sources. The fastest way to get started is to bootstrap from
pre-built binaries.
.. note::
When bootstrapping from pre-built binaries, Spack currently requires
``patchelf`` on Linux and ``otool`` on macOS. If ``patchelf`` is not in the
``PATH``, Spack will build it from sources, and a C++ compiler is required.
The first time you concretize a spec, Spack will bootstrap in the background:
Spack supports using ``clingo`` as an external solver to compute which software
needs to be installed. The default configuration allows Spack to install
``clingo`` from a public buildcache, created by a Github Action workflow. In this
case the bootstrapping procedure is transparent to the user, except for a
slightly long waiting time on the first concretization of a spec:
.. code-block:: console
$ time spack spec zlib
Input spec
--------------------------------
zlib
$ spack find -b
==> Showing internal bootstrap store at "/home/spack/.spack/bootstrap/store"
==> 0 installed packages
Concretized
--------------------------------
zlib@1.2.11%gcc@7.5.0+optimize+pic+shared arch=linux-ubuntu18.04-zen
$ time spack solve zlib
==> Best of 2 considered solutions.
==> Optimization Criteria:
Priority Criterion Value
1 deprecated versions used 0
2 version weight 0
3 number of non-default variants (roots) 0
4 multi-valued variants 0
5 preferred providers for roots 0
6 number of non-default variants (non-roots) 0
7 preferred providers (non-roots) 0
8 compiler mismatches 0
9 version badness 0
10 count of non-root multi-valued variants 0
11 non-preferred compilers 0
12 target mismatches 0
13 non-preferred targets 0
real 0m20.023s
user 0m18.351s
sys 0m0.784s
zlib@1.2.11%gcc@11.1.0+optimize+pic+shared arch=linux-ubuntu18.04-broadwell
real 0m30,618s
user 0m27,278s
sys 0m1,549s
After this command you'll see that ``clingo`` has been installed for Spack's own use:
.. code-block:: console
$ spack find -b
==> Showing internal bootstrap store at "/root/.spack/bootstrap/store"
==> 3 installed packages
==> Showing internal bootstrap store at "/home/spack/.spack/bootstrap/store"
==> 2 installed packages
-- linux-rhel5-x86_64 / gcc@9.3.0 -------------------------------
clingo-bootstrap@spack python@3.6
-- linux-ubuntu18.04-zen / gcc@7.5.0 ----------------------------
patchelf@0.13
Subsequent calls to the concretizer will then be much faster:
.. code-block:: console
$ time spack spec zlib
$ time spack solve zlib
[ ... ]
real 0m0.490s
user 0m0.431s
sys 0m0.041s
real 0m1,222s
user 0m1,146s
sys 0m0,059s
If for security concerns you cannot bootstrap ``clingo`` from pre-built
binaries, you have to mark this bootstrapping method as untrusted. This makes
Spack fall back to bootstrapping from sources:
If for security or for other reasons you don't want to or can't install precompiled
binaries, Spack can fall-back to bootstrap ``clingo`` from source files. To forbid
Spack from retrieving binaries from the bootstrapping buildcache, the following
command must be given:
.. code-block:: console
$ spack bootstrap untrust github-actions-v0.2
==> "github-actions-v0.2" is now untrusted and will not be used for bootstrapping
$ spack bootstrap untrust github-actions
==> "github-actions" is now untrusted and will not be used for bootstrapping
You can verify that the new settings are effective with:
since an "untrusted" way of bootstrapping software will not be considered
by Spack. You can verify the new settings are effective with:
.. code-block:: console
$ spack bootstrap list
Name: github-actions-v0.2 UNTRUSTED
Name: github-actions UNTRUSTED
Type: buildcache
Info:
url: https://mirror.spack.io/bootstrap/github-actions/v0.2
homepage: https://github.com/spack/spack-bootstrap-mirrors
releases: https://github.com/spack/spack-bootstrap-mirrors/releases
url: https://mirror.spack.io/bootstrap/github-actions/v0.1
homepage: https://github.com/alalazo/spack-bootstrap-mirrors
releases: https://github.com/alalazo/spack-bootstrap-mirrors/releases
Description:
Buildcache generated from a public workflow using Github Actions.
The sha256 checksum of binaries is checked before installation.
[ ... ]
Name: spack-install TRUSTED
@@ -179,25 +181,33 @@ You can verify that the new settings are effective with:
Description:
Specs built from sources by Spack. May take a long time.
.. note::
When bootstrapping from sources, Spack requires a full install of Python
including header files (e.g. ``python3-dev`` on Debian), and a compiler
with support for C++14 (GCC on Linux, Apple Clang on macOS) and static C++
standard libraries on Linux.
Spack will build the required software on the first request to concretize a spec:
When bootstrapping from sources, Spack requires a compiler with support
for C++14 (GCC on ``linux``, Apple Clang on ``darwin``) and static C++
standard libraries on ``linux``. Spack will build the required software
on the first request to concretize a spec:
.. code-block:: console
$ spack spec zlib
$ spack solve zlib
[+] /usr (external bison-3.0.4-wu5pgjchxzemk5ya2l3ddqug2d7jv6eb)
[+] /usr (external cmake-3.19.4-a4kmcfzxxy45mzku4ipmj5kdiiz5a57b)
[+] /usr (external python-3.6.9-x4fou4iqqlh5ydwddx3pvfcwznfrqztv)
==> Installing re2c-1.2.1-e3x6nxtk3ahgd63ykgy44mpuva6jhtdt
[ ... ]
==> Optimization: [0, 0, 0, 0, 0, 1, 0, 0, 0]
zlib@1.2.11%gcc@10.1.0+optimize+pic+shared arch=linux-ubuntu18.04-broadwell
.. tip::
If you want to speed-up bootstrapping ``clingo`` from sources, you may try to
search for ``cmake`` and ``bison`` on your system:
.. code-block:: console
$ spack external find cmake bison
==> The following specs have been detected on this system and added to /home/spack/.spack/packages.yaml
bison@3.0.4 cmake@3.19.4
"""""""""""""""""""
The Bootstrap Store
"""""""""""""""""""
@@ -272,10 +282,9 @@ Compiler configuration
----------------------
Spack has the ability to build packages with multiple compilers and
compiler versions. Compilers can be made available to Spack by
specifying them manually in ``compilers.yaml``, or automatically by
running ``spack compiler find``, but for convenience Spack will
automatically detect compilers the first time it needs them.
compiler versions. Spack searches for compilers on your machine
automatically the first time it is run. It does this by inspecting
your ``PATH``.
.. _cmd-spack-compilers:
@@ -283,7 +292,7 @@ automatically detect compilers the first time it needs them.
``spack compilers``
^^^^^^^^^^^^^^^^^^^
You can see which compilers are available to Spack by running ``spack
You can see which compilers spack has found by running ``spack
compilers`` or ``spack compiler list``:
.. code-block:: console
@@ -322,10 +331,9 @@ An alias for ``spack compiler find``.
``spack compiler find``
^^^^^^^^^^^^^^^^^^^^^^^
Lists the compilers currently available to Spack. If you do not see
a compiler in this list, but you want to use it with Spack, you can
simply run ``spack compiler find`` with the path to where the
compiler is installed. For example:
If you do not see a compiler in this list, but you want to use it with
Spack, you can simply run ``spack compiler find`` with the path to
where the compiler is installed. For example:
.. code-block:: console
@@ -1517,238 +1525,3 @@ To ensure that Spack does not autodetect the Cray programming
environment, unset the environment variable ``MODULEPATH``. This
will cause Spack to treat a linux container on a Cray system as a base
linux distro.
.. _windows_support:
----------------
Spack On Windows
----------------
Windows support for Spack is currently under development. While this work is still in an early stage,
it is currently possible to set up Spack and perform a few operations on Windows. This section will guide
you through the steps needed to install Spack and start running it on a fresh Windows machine.
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
Step 1: Install prerequisites
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
To use Spack on Windows, you will need the following packages:
Required:
* Microsoft Visual Studio
* Python
* Git
Optional:
* Intel Fortran (needed for some packages)
.. note::
Currently MSVC is the only compiler tested for C/C++ projects. Intel OneAPI provides Fortran support.
"""""""""""""""""""""""
Microsoft Visual Studio
"""""""""""""""""""""""
Microsoft Visual Studio provides the only Windows C/C++ compiler that is currently supported by Spack.
We require several specific components to be included in the Visual Studio installation.
One is the C/C++ toolset, which can be selected as "Desktop development with C++" or "C++ build tools,"
depending on installation type (Professional, Build Tools, etc.) The other required component is
"C++ CMake tools for Windows," which can be selected from among the optional packages.
This provides CMake and Ninja for use during Spack configuration.
If you already have Visual Studio installed, you can make sure these components are installed by
rerunning the installer. Next to your installation, select "Modify" and look at the
"Installation details" pane on the right.
"""""""""""""
Intel Fortran
"""""""""""""
For Fortran-based packages on Windows, we strongly recommend Intel's oneAPI Fortran compilers.
The suite is free to download from Intel's website, located at
https://software.intel.com/content/www/us/en/develop/tools/oneapi/components/fortran-compiler.html#gs.70t5tw.
The executable of choice for Spack will be Intel's Beta Compiler, ifx, which supports the classic
compiler's (ifort's) frontend and runtime libraries by using LLVM.
""""""
Python
""""""
As Spack is a Python-based package, an installation of Python will be needed to run it.
Python 3 can be downloaded and installed from the Windows Store, and will be automatically added
to your ``PATH`` in this case.
.. note::
Spack currently supports Python versions later than 3.2 inclusive.
"""
Git
"""
A bash console and GUI can be downloaded from https://git-scm.com/downloads.
If you are unfamiliar with Git, there are a myriad of resources online to help
guide you through checking out repositories and switching development branches.
When given the option of adjusting your ``PATH``, choose the ``Git from the
command line and also from 3rd-party software`` option. This will automatically
update your ``PATH`` variable to include the ``git`` command.
Spack support on Windows is currently dependent on installing the Git for Windows project
as the project providing Git support on Windows. This is additionally the recommended method
for installing Git on Windows, a link to which can be found above. Spack requires the
utilities vendored by this project.
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
Step 2: Install and setup Spack
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
We are now ready to get the Spack environment set up on our machine. We
begin by using Git to clone the Spack repo, hosted at https://github.com/spack/spack.git
into a desired directory, for our purposes today, called ``spack_install``.
In order to install Spack with Windows support, run the following one liner
in a Windows CMD prompt.
.. code-block:: console
git clone https://github.com/spack/spack.git
.. note::
If you chose to install Spack into a directory on Windows that is set up to require Administrative
Privleges, Spack will require elevated privleges to run.
Administrative Privleges can be denoted either by default such as
``C:\Program Files``, or aministrator applied administrative restrictions
on a directory that spack installs files to such as ``C:\Users``
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
Step 3: Run and configure Spack
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
To use Spack, run ``bin\spack_cmd.bat`` (you may need to Run as Administrator) from the top-level spack
directory. This will provide a Windows command prompt with an environment properly set up with Spack
and its prerequisites. If you receive a warning message that Python is not in your ``PATH``
(which may happen if you installed Python from the website and not the Windows Store) add the location
of the Python executable to your ``PATH`` now. You can permanently add Python to your ``PATH`` variable
by using the ``Edit the system environment variables`` utility in Windows Control Panel.
.. note::
Alternatively, Powershell can be used in place of CMD
To configure Spack, first run the following command inside the Spack console:
.. code-block:: console
spack compiler find
This creates a ``.staging`` directory in our Spack prefix, along with a ``windows`` subdirectory
containing a ``compilers.yaml`` file. On a fresh Windows install with the above packages
installed, this command should only detect Microsoft Visual Studio and the Intel Fortran
compiler will be integrated within the first version of MSVC present in the ``compilers.yaml``
output.
Spack provides a default ``config.yaml`` file for Windows that it will use unless overridden.
This file is located at ``etc\spack\defaults\windows\config.yaml``. You can read more on how to
do this and write your own configuration files in the :ref:`Configuration Files<configuration>` section of our
documentation. If you do this, pay particular attention to the ``build_stage`` block of the file
as this specifies the directory that will temporarily hold the source code for the packages to
be installed. This path name must be sufficiently short for compliance with cmd, otherwise you
will see build errors during installation (particularly with CMake) tied to long path names.
To allow Spack use of external tools and dependencies already on your system, the
external pieces of software must be described in the ``packages.yaml`` file.
There are two methods to populate this file:
The first and easiest choice is to use Spack to find installation on your system. In
the Spack terminal, run the following commands:
.. code-block:: console
spack external find cmake
spack external find ninja
The ``spack external find <name>`` will find executables on your system
with the same name given. The command will store the items found in
``packages.yaml`` in the ``.staging\`` directory.
Assuming that the command found CMake and Ninja executables in the previous
step, continue to Step 4. If no executables were found, we may need to manually direct spack towards the CMake
and Ninja installations we set up with Visual Studio. Therefore, your ``packages.yaml`` file will look something
like this, with possibly slight variants in the paths to CMake and Ninja:
.. code-block:: yaml
packages:
cmake:
externals:
- spec: cmake@3.19
prefix: 'c:\Program Files (x86)\Microsoft Visual Studio\2019\Professional\Common7\IDE\CommonExtensions\Microsoft\CMake\CMake'
buildable: False
ninja:
externals:
- spec: ninja@1.8.2
prefix: 'c:\Program Files (x86)\Microsoft Visual Studio\2019\Professional\Common7\IDE\CommonExtensions\Microsoft\CMake\Ninja'
buildable: False
You can also use an separate installation of CMake if you have one and prefer
to use it. If you don't have a path to Ninja analogous to the above, then you can
obtain it by running the Visual Studio Installer and following the instructions
at the start of this section. Also note that .yaml files use spaces for indentation
and not tabs, so ensure that this is the case when editing one directly.
.. note:: Cygwin
The use of Cygwin is not officially supported by Spack and is not tested.
However Spack will not throw an error, so use if choosing to use Spack
with Cygwin, know that no functionality is garunteed.
^^^^^^^^^^^^^^^^^
Step 4: Use Spack
^^^^^^^^^^^^^^^^^
Once the configuration is complete, it is time to give the installation a test. Install a basic package though the
Spack console via:
.. code-block:: console
spack install cpuinfo
If in the previous step, you did not have CMake or Ninja installed, running the command above should boostrap both packages
"""""""""""""""""""""""""""
Windows Compatible Packages
"""""""""""""""""""""""""""
Many Spack packages are not currently compatible with Windows, due to Unix
dependencies or incompatible build tools like autoconf. Here are several
packages known to work on Windows:
* abseil-cpp
* clingo
* cpuinfo
* cmake
* glm
* nasm
* netlib-lapack (requires Intel Fortran)
* ninja
* openssl
* perl
* python
* ruby
* wrf
* zlib
.. note::
This is by no means a comprehensive list
^^^^^^^^^^^^^^
For developers
^^^^^^^^^^^^^^
The intent is to provide a Windows installer that will automatically set up
Python, Git, and Spack, instead of requiring the user to do so manually.
Instructions for creating the installer are at
https://github.com/spack/spack/blob/develop/lib/spack/spack/cmd/installer/README.md
Alternatively a pre-built copy of the Windows installer is available as an artifact of Spack's Windows CI

View File

@@ -1,4 +1,4 @@
.. Copyright 2013-2022 Lawrence Livermore National Security, LLC and other
.. Copyright 2013-2021 Lawrence Livermore National Security, LLC and other
Spack Project Developers. See the top-level COPYRIGHT file for details.
SPDX-License-Identifier: (Apache-2.0 OR MIT)
@@ -39,7 +39,7 @@ package:
.. code-block:: console
$ git clone -c feature.manyFiles=true https://github.com/spack/spack.git
$ git clone https://github.com/spack/spack.git
$ cd spack/bin
$ ./spack install libelf
@@ -54,8 +54,9 @@ or refer to the full manual below.
features
getting_started
basic_usage
workflows
Tutorial: Spack 101 <https://spack-tutorial.readthedocs.io>
replace_conda_homebrew
known_issues
.. toctree::
:maxdepth: 2

View File

@@ -0,0 +1,77 @@
.. Copyright 2013-2021 Lawrence Livermore National Security, LLC and other
Spack Project Developers. See the top-level COPYRIGHT file for details.
SPDX-License-Identifier: (Apache-2.0 OR MIT)
============
Known Issues
============
This is a list of known bugs in Spack. It provides ways of getting around these
problems if you encounter them.
---------------------------------------------------
Variants are not properly forwarded to dependencies
---------------------------------------------------
**Status:** Expected to be fixed by Spack's new concretizer
Sometimes, a variant of a package can also affect how its dependencies are
built. For example, in order to build MPI support for a package, it may
require that its dependencies are also built with MPI support. In the
``package.py``, this looks like:
.. code-block:: python
depends_on('hdf5~mpi', when='~mpi')
depends_on('hdf5+mpi', when='+mpi')
Spack handles this situation properly for *immediate* dependencies, and
builds ``hdf5`` with the same variant you used for the package that
depends on it. However, for *indirect* dependencies (dependencies of
dependencies), Spack does not backtrack up the DAG far enough to handle
this. Users commonly run into this situation when trying to build R with
X11 support:
.. code-block:: console
$ spack install r+X
...
==> Error: Invalid spec: 'cairo@1.14.8%gcc@6.2.1+X arch=linux-fedora25-x86_64 ^bzip2@1.0.6%gcc@6.2.1+shared arch=linux-fedora25-x86_64 ^font-util@1.3.1%gcc@6.2.1 arch=linux-fedora25-x86_64 ^fontconfig@2.12.1%gcc@6.2.1 arch=linux-fedora25-x86_64 ^freetype@2.7.1%gcc@6.2.1 arch=linux-fedora25-x86_64 ^gettext@0.19.8.1%gcc@6.2.1+bzip2+curses+git~libunistring+libxml2+tar+xz arch=linux-fedora25-x86_64 ^glib@2.53.1%gcc@6.2.1~libmount arch=linux-fedora25-x86_64 ^inputproto@2.3.2%gcc@6.2.1 arch=linux-fedora25-x86_64 ^kbproto@1.0.7%gcc@6.2.1 arch=linux-fedora25-x86_64 ^libffi@3.2.1%gcc@6.2.1 arch=linux-fedora25-x86_64 ^libpng@1.6.29%gcc@6.2.1 arch=linux-fedora25-x86_64 ^libpthread-stubs@0.4%gcc@6.2.1 arch=linux-fedora25-x86_64 ^libx11@1.6.5%gcc@6.2.1 arch=linux-fedora25-x86_64 ^libxau@1.0.8%gcc@6.2.1 arch=linux-fedora25-x86_64 ^libxcb@1.12%gcc@6.2.1 arch=linux-fedora25-x86_64 ^libxdmcp@1.1.2%gcc@6.2.1 arch=linux-fedora25-x86_64 ^libxext@1.3.3%gcc@6.2.1 arch=linux-fedora25-x86_64 ^libxml2@2.9.4%gcc@6.2.1~python arch=linux-fedora25-x86_64 ^libxrender@0.9.10%gcc@6.2.1 arch=linux-fedora25-x86_64 ^ncurses@6.0%gcc@6.2.1~symlinks arch=linux-fedora25-x86_64 ^openssl@1.0.2k%gcc@6.2.1 arch=linux-fedora25-x86_64 ^pcre@8.40%gcc@6.2.1+utf arch=linux-fedora25-x86_64 ^pixman@0.34.0%gcc@6.2.1 arch=linux-fedora25-x86_64 ^pkg-config@0.29.2%gcc@6.2.1+internal_glib arch=linux-fedora25-x86_64 ^python@2.7.13%gcc@6.2.1+shared~tk~ucs4 arch=linux-fedora25-x86_64 ^readline@7.0%gcc@6.2.1 arch=linux-fedora25-x86_64 ^renderproto@0.11.1%gcc@6.2.1 arch=linux-fedora25-x86_64 ^sqlite@3.18.0%gcc@6.2.1 arch=linux-fedora25-x86_64 ^tar^util-macros@1.19.1%gcc@6.2.1 arch=linux-fedora25-x86_64 ^xcb-proto@1.12%gcc@6.2.1 arch=linux-fedora25-x86_64 ^xextproto@7.3.0%gcc@6.2.1 arch=linux-fedora25-x86_64 ^xproto@7.0.31%gcc@6.2.1 arch=linux-fedora25-x86_64 ^xtrans@1.3.5%gcc@6.2.1 arch=linux-fedora25-x86_64 ^xz@5.2.3%gcc@6.2.1 arch=linux-fedora25-x86_64 ^zlib@1.2.11%gcc@6.2.1+pic+shared arch=linux-fedora25-x86_64'.
Package cairo requires variant ~X, but spec asked for +X
A workaround is to explicitly activate the variants of dependencies as well:
.. code-block:: console
$ spack install r+X ^cairo+X ^pango+X
See https://github.com/spack/spack/issues/267 and
https://github.com/spack/spack/issues/2546 for further details.
-----------------------------------------------
depends_on cannot handle recursive dependencies
-----------------------------------------------
**Status:** Not yet a work in progress
Although ``depends_on`` can handle any aspect of Spack's spec syntax,
it currently cannot handle recursive dependencies. If the ``^`` sigil
appears in a ``depends_on`` statement, the concretizer will hang.
For example, something like:
.. code-block:: python
depends_on('mfem+cuda ^hypre+cuda', when='+cuda')
should be rewritten as:
.. code-block:: python
depends_on('mfem+cuda', when='+cuda')
depends_on('hypre+cuda', when='+cuda')
See https://github.com/spack/spack/issues/17660 and
https://github.com/spack/spack/issues/11160 for more details.

View File

@@ -1,13 +1,13 @@
.. Copyright 2013-2022 Lawrence Livermore National Security, LLC and other
.. Copyright 2013-2021 Lawrence Livermore National Security, LLC and other
Spack Project Developers. See the top-level COPYRIGHT file for details.
SPDX-License-Identifier: (Apache-2.0 OR MIT)
.. _mirrors:
======================
Mirrors (mirrors.yaml)
======================
=======
Mirrors
=======
Some sites may not have access to the internet for fetching packages.
These sites will need a local repository of tarballs from which they

View File

@@ -1,13 +1,13 @@
.. Copyright 2013-2022 Lawrence Livermore National Security, LLC and other
.. Copyright 2013-2021 Lawrence Livermore National Security, LLC and other
Spack Project Developers. See the top-level COPYRIGHT file for details.
SPDX-License-Identifier: (Apache-2.0 OR MIT)
.. _modules:
======================
Modules (modules.yaml)
======================
=======
Modules
=======
The use of module systems to manage user environment in a controlled way
is a common practice at HPC centers that is often embraced also by
@@ -181,7 +181,10 @@ to the environment variables listed below the folder name.
Spack modules can be configured for multiple module sets. The default
module set is named ``default``. All Spack commands which operate on
modules default to apply the ``default`` module set, but can be
applied to any module set in the configuration.
applied to any module set in the configuration. Settings applied at
the root of the configuration (e.g. ``modules:enable`` rather than
``modules:default:enable``) are applied to the default module set for
backwards compatibility.
"""""""""""""""""""""""""
Changing the modules root
@@ -210,18 +213,6 @@ location). The set ``my_custom_lmod_modules`` will install its lmod
modules to ``/path/to/install/custom/lmod/modules`` (and still install
its tcl modules, if any, to the default location).
By default, an architecture-specific directory is added to the root
directory. A module set may override that behavior by setting the
``arch_folder`` config value to ``False``.
.. code-block:: yaml
modules:
default:
roots:
tcl: /path/to/install/tcl/modules
arch_folder: false
Obviously, having multiple module sets install modules to the default
location could be confusing to users of your modules. In the next
section, we will discuss enabling and disabling module types (module
@@ -270,30 +261,29 @@ of the installed software. For instance, in the snippet below:
.. code-block:: yaml
modules:
default:
tcl:
# The keyword `all` selects every package
all:
environment:
set:
BAR: 'bar'
# This anonymous spec selects any package that
# depends on openmpi. The double colon at the
# end clears the set of rules that matched so far.
^openmpi::
environment:
set:
BAR: 'baz'
# Selects any zlib package
zlib:
environment:
prepend_path:
LD_LIBRARY_PATH: 'foo'
# Selects zlib compiled with gcc@4.8
zlib%gcc@4.8:
environment:
unset:
- FOOBAR
tcl:
# The keyword `all` selects every package
all:
environment:
set:
BAR: 'bar'
# This anonymous spec selects any package that
# depends on openmpi. The double colon at the
# end clears the set of rules that matched so far.
^openmpi::
environment:
set:
BAR: 'baz'
# Selects any zlib package
zlib:
environment:
prepend_path:
LD_LIBRARY_PATH: 'foo'
# Selects zlib compiled with gcc@4.8
zlib%gcc@4.8:
environment:
unset:
- FOOBAR
you are instructing Spack to set the environment variable ``BAR=bar`` for every module,
unless the associated spec satisfies ``^openmpi`` in which case ``BAR=baz``.
@@ -320,10 +310,9 @@ your system. If you write a configuration file like:
.. code-block:: yaml
modules:
default:
tcl:
whitelist: ['gcc', 'llvm'] # Whitelist will have precedence over blacklist
blacklist: ['%gcc@4.4.7'] # Assuming gcc@4.4.7 is the system compiler
tcl:
whitelist: ['gcc', 'llvm'] # Whitelist will have precedence over blacklist
blacklist: ['%gcc@4.4.7'] # Assuming gcc@4.4.7 is the system compiler
you will prevent the generation of module files for any package that
is compiled with ``gcc@4.4.7``, with the only exception of any ``gcc``
@@ -348,9 +337,8 @@ shows how to set hash length in the module file names:
.. code-block:: yaml
modules:
default:
tcl:
hash_length: 7
tcl:
hash_length: 7
To help make module names more readable, and to help alleviate name conflicts
with a short hash, one can use the ``suffixes`` option in the modules
@@ -360,12 +348,11 @@ For instance, the following config options,
.. code-block:: yaml
modules:
default:
tcl:
all:
suffixes:
^python@2.7.12: 'python-2.7.12'
^openblas: 'openblas'
tcl:
all:
suffixes:
^python@2.7.12: 'python-2.7.12'
^openblas: 'openblas'
will add a ``python-2.7.12`` version string to any packages compiled with
python matching the spec, ``python@2.7.12``. This is useful to know which
@@ -375,16 +362,15 @@ most likely via the ``+blas`` variant specification.
The most heavyweight solution to module naming is to change the entire
naming convention for module files. This uses the projections format
covered in :ref:`view_projections`.
covered in :ref:`adding_projections_to_views`.
.. code-block:: yaml
modules:
default:
tcl:
projections:
all: '{name}/{version}-{compiler.name}-{compiler.version}-module'
^mpi: '{name}/{version}-{^mpi.name}-{^mpi.version}-{compiler.name}-{compiler.version}-module'
tcl:
projections:
all: '{name}/{version}-{compiler.name}-{compiler.version}-module'
^mpi: '{name}/{version}-{^mpi.name}-{^mpi.version}-{compiler.name}-{compiler.version}-module'
will create module files that are nested in directories by package
name, contain the version and compiler name and version, and have the
@@ -405,16 +391,15 @@ that are already in the LMod hierarchy.
.. code-block:: yaml
modules:
default:
enable:
- tcl
tcl:
projections:
all: '{name}/{version}-{compiler.name}-{compiler.version}'
all:
conflict:
- '{name}'
- 'intel/14.0.1'
enable:
- tcl
tcl:
projections:
all: '{name}/{version}-{compiler.name}-{compiler.version}'
all:
conflict:
- '{name}'
- 'intel/14.0.1'
will create module files that will conflict with ``intel/14.0.1`` and with the
base directory of the same module, effectively preventing the possibility to
@@ -434,17 +419,16 @@ that are already in the LMod hierarchy.
.. code-block:: yaml
modules:
default:
enable:
- lmod
lmod:
core_compilers:
- 'gcc@4.8'
core_specs:
- 'python'
hierarchy:
- 'mpi'
- 'lapack'
enable:
- lmod
lmod:
core_compilers:
- 'gcc@4.8'
core_specs:
- 'python'
hierarchy:
- 'mpi'
- 'lapack'
that will generate a hierarchy in which the ``lapack`` and ``mpi`` layer can be switched
independently. This allows a site to build the same libraries or applications against different
@@ -465,36 +449,6 @@ that are already in the LMod hierarchy.
For hierarchies that are deeper than three layers ``lmod spider`` may have some issues.
See `this discussion on the LMod project <https://github.com/TACC/Lmod/issues/114>`_.
""""""""""""""""""""""
Select default modules
""""""""""""""""""""""
By default, when multiple modules of the same name share a directory,
the highest version number will be the default module. This behavior
of the ``module`` command can be overridden with a symlink named
``default`` to the desired default module. If you wish to configure
default modules with Spack, add a ``defaults`` key to your modules
configuration:
.. code-block:: yaml
modules:
my-module-set:
tcl:
defaults:
- gcc@10.2.1
- hdf5@1.2.10+mpi+hl%gcc
These defaults may be arbitrarily specific. For any package that
satisfies a default, Spack will generate the module file in the
appropriate path, and will generate a default symlink to the module
file as well.
.. warning::
If Spack is configured to generate multiple default packages in the
same directory, the last modulefile to be generated will be the
default module.
.. _customize-env-modifications:
"""""""""""""""""""""""""""""""""""
@@ -537,7 +491,8 @@ configuration:
#. The configuration is for an :ref:`environment <environments>` and
will never be applied outside the environment,
#. The environment in question is configured to use a view,
#. The environment in question is configured to use a :ref:`view
<filesystem-views>`,
#. The :ref:`environment view is configured
<configuring_environment_views>` with a projection that ensures
every package is linked to a unique directory,
@@ -594,12 +549,11 @@ do so by using the environment blacklist:
.. code-block:: yaml
modules:
default:
tcl:
all:
filter:
# Exclude changes to any of these variables
environment_blacklist: ['CPATH', 'LIBRARY_PATH']
tcl:
all:
filter:
# Exclude changes to any of these variables
environment_blacklist: ['CPATH', 'LIBRARY_PATH']
The configuration above will generate module files that will not contain
modifications to either ``CPATH`` or ``LIBRARY_PATH``.
@@ -611,39 +565,42 @@ modifications to either ``CPATH`` or ``LIBRARY_PATH``.
Autoload dependencies
"""""""""""""""""""""
Often it is required for a module to have its (transient) dependencies loaded as well.
One example where this is useful is when one package needs to use executables provided
by its dependency; when the dependency is autoloaded, the executable will be in the
PATH. Similarly for scripting languages such as Python, packages and their dependencies
have to be loaded together.
Autoloading is enabled by default for LMod, as it has great builtin support for through
the ``depends_on`` function. For Environment Modules it is disabled by default.
Autoloading can also be enabled conditionally:
In some cases it can be useful to have module files that automatically load
their dependencies. This may be the case for Python extensions, if not
activated using ``spack activate``:
.. code-block:: yaml
modules:
default:
tcl:
all:
autoload: none
^python:
autoload: direct
modules:
tcl:
^python:
autoload: 'direct'
The configuration file above will produce module files that will
load their direct dependencies if the package installed depends on ``python``.
The allowed values for the ``autoload`` statement are either ``none``,
``direct`` or ``all``.
``direct`` or ``all``. The default is ``none``.
.. tip::
Building external software
Setting ``autoload`` to ``direct`` for all packages can be useful
when building software outside of a Spack installation that depends on
artifacts in that installation. E.g. (adjust ``lmod`` vs ``tcl``
as appropriate):
.. code-block:: yaml
modules:
lmod:
all:
autoload: 'direct'
.. note::
TCL prerequisites
In the ``tcl`` section of the configuration file it is possible to use
the ``prerequisites`` directive that accepts the same values as
``autoload``. It will produce module files that have a ``prereq``
statement, which can be used to autoload dependencies in some versions
of Environment Modules.
statement instead of automatically loading other modules.
------------------------
Maintaining Module Files

View File

@@ -1,4 +1,4 @@
.. Copyright 2013-2022 Lawrence Livermore National Security, LLC and other
.. Copyright 2013-2021 Lawrence Livermore National Security, LLC and other
Spack Project Developers. See the top-level COPYRIGHT file for details.
SPDX-License-Identifier: (Apache-2.0 OR MIT)

View File

@@ -1,4 +1,4 @@
.. Copyright 2013-2022 Lawrence Livermore National Security, LLC and other
.. Copyright 2013-2021 Lawrence Livermore National Security, LLC and other
Spack Project Developers. See the top-level COPYRIGHT file for details.
SPDX-License-Identifier: (Apache-2.0 OR MIT)

View File

@@ -1,4 +1,4 @@
.. Copyright 2013-2022 Lawrence Livermore National Security, LLC and other
.. Copyright 2013-2021 Lawrence Livermore National Security, LLC and other
Spack Project Developers. See the top-level COPYRIGHT file for details.
SPDX-License-Identifier: (Apache-2.0 OR MIT)
@@ -695,24 +695,20 @@ example, ``py-sphinx-rtd-theme@0.1.10a0``. In this case, numbers are
always considered to be "newer" than letters. This is for consistency
with `RPM <https://bugzilla.redhat.com/show_bug.cgi?id=50977>`_.
Spack versions may also be arbitrary non-numeric strings, for example
``@develop``, ``@master``, ``@local``.
Spack versions may also be arbitrary non-numeric strings; any string
here will suffice; for example, ``@develop``, ``@master``, ``@local``.
Versions are compared as follows. First, a version string is split into
multiple fields based on delimiters such as ``.``, ``-`` etc. Then
matching fields are compared using the rules below:
The order on versions is defined as follows. A version string is split
into a list of components based on delimiters such as ``.``, ``-`` etc.
Lists are then ordered lexicographically, where components are ordered
as follows:
#. The following develop-like strings are greater (newer) than all
numbers and are ordered as ``develop > main > master > head > trunk``.
#. The following special strings are considered larger than any other
numeric or non-numeric version component, and satisfy the following
order between themselves:
``develop > main > master > head > trunk > stable``.
#. Numbers are all less than the chosen develop-like strings above,
and are sorted numerically.
#. Numbers are ordered numerically, are less than special strings, and
larger than other non-numeric components.
#. All other non-numeric components are less than numeric components,
and are ordered alphabetically.
#. All other non-numeric versions are less than numeric versions, and
are sorted alphabetically.
The logic behind this sort order is two-fold:
@@ -733,7 +729,7 @@ Version selection
When concretizing, many versions might match a user-supplied spec.
For example, the spec ``python`` matches all available versions of the
package ``python``. Similarly, ``python@3:`` matches all versions of
Python 3 and above. Given a set of versions that match a spec, Spack
Python3. Given a set of versions that match a spec, Spack
concretization uses the following priorities to decide which one to
use:
@@ -1423,117 +1419,6 @@ other similar operations:
).with_default('auto').with_non_feature_values('auto'),
)
"""""""""""""""""""""""""""
Conditional Possible Values
"""""""""""""""""""""""""""
There are cases where a variant may take multiple values, and the list of allowed values
expand over time. Think for instance at the C++ standard with which we might compile
Boost, which can take one of multiple possible values with the latest standards
only available from a certain version on.
To model a similar situation we can use *conditional possible values* in the variant declaration:
.. code-block:: python
variant(
'cxxstd', default='98',
values=(
'98', '11', '14',
# C++17 is not supported by Boost < 1.63.0.
conditional('17', when='@1.63.0:'),
# C++20/2a is not support by Boost < 1.73.0
conditional('2a', '2b', when='@1.73.0:')
),
multi=False,
description='Use the specified C++ standard when building.',
)
The snippet above allows ``98``, ``11`` and ``14`` as unconditional possible values for the
``cxxstd`` variant, while ``17`` requires a version greater or equal to ``1.63.0``
and both ``2a`` and ``2b`` require a version greater or equal to ``1.73.0``.
^^^^^^^^^^^^^^^^^^^^
Conditional Variants
^^^^^^^^^^^^^^^^^^^^
The variant directive accepts a ``when`` clause. The variant will only
be present on specs that otherwise satisfy the spec listed as the
``when`` clause. For example, the following class has a variant
``bar`` when it is at version 2.0 or higher.
.. code-block:: python
class Foo(Package):
...
variant('bar', default=False, when='@2.0:', description='help message')
The ``when`` clause follows the same syntax and accepts the same
values as the ``when`` argument of
:py:func:`spack.directives.depends_on`
^^^^^^^^^^^^^^^
Sticky Variants
^^^^^^^^^^^^^^^
The variant directive can be marked as ``sticky`` by setting to ``True`` the
corresponding argument:
.. code-block:: python
variant('bar', default=False, sticky=True)
A ``sticky`` variant differs from a regular one in that it is always set
to either:
#. An explicit value appearing in a spec literal or
#. Its default value
The concretizer thus is not free to pick an alternate value to work
around conflicts, but will error out instead.
Setting this property on a variant is useful in cases where the
variant allows some dangerous or controversial options (e.g. using unsupported versions
of a compiler for a library) and the packager wants to ensure that
allowing these options is done on purpose by the user, rather than
automatically by the solver.
^^^^^^^^^^^^^^^^^^^
Overriding Variants
^^^^^^^^^^^^^^^^^^^
Packages may override variants for several reasons, most often to
change the default from a variant defined in a parent class or to
change the conditions under which a variant is present on the spec.
When a variant is defined multiple times, whether in the same package
file or in a subclass and a superclass, the last definition is used
for all attributes **except** for the ``when`` clauses. The ``when``
clauses are accumulated through all invocations, and the variant is
present on the spec if any of the accumulated conditions are
satisfied.
For example, consider the following package:
.. code-block:: python
class Foo(Package):
...
variant('bar', default=False, when='@1.0', description='help1')
variant('bar', default=True, when='platform=darwin', description='help2')
...
This package ``foo`` has a variant ``bar`` when the spec satisfies
either ``@1.0`` or ``platform=darwin``, but not for other platforms at
other versions. The default for this variant, when it is present, is
always ``True``, regardless of which condition of the variant is
satisfied. This allows packages to override variants in packages or
build system classes from which they inherit, by modifying the variant
values without modifying the ``when`` clause. It also allows a package
to implement ``or`` semantics for a variant ``when`` clause by
duplicating the variant definition.
------------------------------------
Resources (expanding extra tarballs)
------------------------------------
@@ -2178,7 +2063,7 @@ Version ranges
^^^^^^^^^^^^^^
Although some packages require a specific version for their dependencies,
most can be built with a range of versions. For example, if you are
most can be built with a range of version. For example, if you are
writing a package for a legacy Python module that only works with Python
2.4 through 2.6, this would look like:
@@ -2187,9 +2072,9 @@ writing a package for a legacy Python module that only works with Python
depends_on('python@2.4:2.6')
Version ranges in Spack are *inclusive*, so ``2.4:2.6`` means any version
greater than or equal to ``2.4`` and up to and including any ``2.6.x``. If
you want to specify that a package works with any version of Python 3 (or
higher), this would look like:
greater than or equal to ``2.4`` and up to and including ``2.6``. If you
want to specify that a package works with any version of Python 3, this
would look like:
.. code-block:: python
@@ -2200,30 +2085,29 @@ requires Python 2, you can similarly leave out the lower bound:
.. code-block:: python
depends_on('python@:2')
depends_on('python@:2.9')
Notice that we didn't use ``@:3``. Version ranges are *inclusive*, so
``@:3`` means "up to and including any 3.x version".
``@:3`` means "up to and including 3".
What if a package can only be built with Python 2.7? You might be
What if a package can only be built with Python 2.6? You might be
inclined to use:
.. code-block:: python
depends_on('python@2.7')
depends_on('python@2.6')
However, this would be wrong. Spack assumes that all version constraints
are exact, so it would try to install Python not at ``2.7.18``, but
exactly at ``2.7``, which is a non-existent version. The correct way to
specify this would be:
are absolute, so it would try to install Python at exactly ``2.6``. The
correct way to specify this would be:
.. code-block:: python
depends_on('python@2.7.0:2.7')
depends_on('python@2.6.0:2.6.999')
A spec can contain a version list of ranges and individual versions
separated by commas. For example, if you need Boost 1.59.0 or newer,
but there are known issues with 1.64.0, 1.65.0, and 1.66.0, you can say:
A spec can contain multiple version ranges separated by commas.
For example, if you need Boost 1.59.0 or newer, but there are known
issues with 1.64.0, 1.65.0, and 1.66.0, you can say:
.. code-block:: python
@@ -2501,24 +2385,6 @@ Now, the ``py-numpy`` package can be used as an argument to ``spack
activate``. When it is activated, all the files in its prefix will be
symbolically linked into the prefix of the python package.
A package can only extend one other package at a time. To support packages
that may extend one of a list of other packages, Spack supports multiple
``extends`` directives as long as at most one of them is selected as
a dependency during concretization. For example, a lua package could extend
either lua or luajit, but not both:
.. code-block:: python
class LuaLpeg(Package):
...
variant('use_lua', default=True)
extends('lua', when='+use_lua')
extends('lua-luajit', when='~use_lua')
...
Now, a user can install, and activate, the ``lua-lpeg`` package for either
lua or luajit.
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
Adding additional constraints
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
@@ -2574,7 +2440,7 @@ from being linked in at activation time.
Views
-----
The ``spack view`` command can be
As covered in :ref:`filesystem-views`, the ``spack view`` command can be
used to symlink a number of packages into a merged prefix. The methods of
``PackageViewMixin`` can be overridden to customize how packages are added
to views. Generally this can be used to create copies of specific files rather
@@ -2908,7 +2774,7 @@ be concretized on their system. For example, one user may prefer packages
built with OpenMPI and the Intel compiler. Another user may prefer
packages be built with MVAPICH and GCC.
See the :ref:`package-preferences` section for more details.
See the :ref:`concretization-preferences` section for more details.
.. _group_when_spec:
@@ -2958,7 +2824,7 @@ is equivalent to:
depends_on('elpa+openmp', when='+openmp+elpa')
Constraints from nested context managers are also combined together, but they are rarely
Constraints from nested context managers are also added together, but they are rarely
needed or recommended.
.. _install-method:
@@ -3019,7 +2885,7 @@ The package base class, usually specialized for a given build system, determines
actual set of entities available for overriding.
The classes that are currently provided by Spack are:
+----------------------------------------------------------+----------------------------------+
+-------------------------=--------------------------------+----------------------------------+
| **Base Class** | **Purpose** |
+==========================================================+==================================+
| :class:`~spack.package.Package` | General base class not |
@@ -5323,7 +5189,7 @@ would be quite complicated to do using regex only. Employing the
.. code-block:: python
class Gcc(Package):
executables = [r'g\+\+']
executables = ['g++']
def filter_detected_exes(cls, prefix, exes_in_prefix):
return [x for x in exes_in_prefix if 'clang' not in x]

View File

@@ -1,4 +1,4 @@
.. Copyright 2013-2022 Lawrence Livermore National Security, LLC and other
.. Copyright 2013-2021 Lawrence Livermore National Security, LLC and other
Spack Project Developers. See the top-level COPYRIGHT file for details.
SPDX-License-Identifier: (Apache-2.0 OR MIT)
@@ -48,9 +48,9 @@ or Amazon Elastic Kubernetes Service (`EKS <https://aws.amazon.com/eks>`_), thou
topics are outside the scope of this document.
Spack's pipelines are now making use of the
`trigger <https://docs.gitlab.com/ee/ci/yaml/#trigger>`_ syntax to run
`trigger <https://docs.gitlab.com/12.9/ee/ci/yaml/README.html#trigger>`_ syntax to run
dynamically generated
`child pipelines <https://docs.gitlab.com/ee/ci/pipelines/parent_child_pipelines.html>`_.
`child pipelines <https://docs.gitlab.com/12.9/ee/ci/parent_child_pipelines.html>`_.
Note that the use of dynamic child pipelines requires running Gitlab version
``>= 12.9``.

View File

@@ -1,206 +0,0 @@
.. Copyright 2013-2022 Lawrence Livermore National Security, LLC and other
Spack Project Developers. See the top-level COPYRIGHT file for details.
SPDX-License-Identifier: (Apache-2.0 OR MIT)
=====================================
Using Spack to Replace Homebrew/Conda
=====================================
Spack is an incredibly powerful package manager, designed for supercomputers
where users have diverse installation needs. But Spack can also be used to
handle simple single-user installations on your laptop. Most macOS users are
already familiar with package managers like Homebrew and Conda, where all
installed packages are symlinked to a single central location like ``/usr/local``.
In this section, we will show you how to emulate the behavior of Homebrew/Conda
using :ref:`environments`!
-----
Setup
-----
First, let's create a new environment. We'll assume that Spack is already set up
correctly, and that you've already sourced the setup script for your shell.
To create a new environment, simply run:
.. code-block:: console
$ spack env create myenv
Here, *myenv* can be anything you want to name your environment. Next, we can add
a list of packages we would like to install into our environment. Let's say we
want a newer version of Bash than the one that comes with macOS, and we want a
few Python libraries. We can run:
.. code-block:: console
$ spack -e myenv add bash@5 python py-numpy py-scipy py-matplotlib
Each package can be listed on a separate line, or combined into a single line like we did above.
Notice that we're explicitly asking for Bash 5 here. You can use any spec
you would normally use on the command line with other Spack commands.
Next, we want to manually configure a couple of things:
.. code-block:: console
$ spack -e myenv config edit
.. code-block:: yaml
# This is a Spack Environment file.
#
# It describes a set of packages to be installed, along with
# configuration settings.
spack:
# add package specs to the `specs` list
specs: [bash@5, python, py-numpy, py-scipy, py-matplotlib]
view: true
You can see the packages we added earlier in the ``specs:`` section. If you
ever want to add more packages, you can either use ``spack add`` or manually
edit this file.
We also need to change the ``concretization:`` option. By default, Spack
concretizes each spec *separately*, allowing multiple versions of the same
package to coexist. Since we want a single consistent environment, we want to
concretize all of the specs *together*.
Here is what your ``spack.yaml`` looks like with this new setting:
.. code-block:: yaml
# This is a Spack Environment file.
#
# It describes a set of packages to be installed, along with
# configuration settings.
spack:
# add package specs to the `specs` list
specs: [bash@5, python, py-numpy, py-scipy, py-matplotlib]
view: true
concretization: together
^^^^^^^^^^^^^^^^
Symlink location
^^^^^^^^^^^^^^^^
Spack symlinks all installations to ``/Users/me/spack/var/spack/environments/myenv/.spack-env/view``,
which is the default when ``view: true``.
You can actually change this to any directory you want. For example, Homebrew
uses ``/usr/local``, while Conda uses ``/Users/me/anaconda``. In order to access
files in these locations, you need to update ``PATH`` and other environment variables
to point to them. Activating the Spack environment does this automatically, but
you can also manually set them in your ``.bashrc``.
.. warning::
There are several reasons why you shouldn't use ``/usr/local``:
1. If you are on macOS 10.11+ (El Capitan and newer), Apple makes it hard
for you. You may notice permissions issues on ``/usr/local`` due to their
`System Integrity Protection <https://support.apple.com/en-us/HT204899>`_.
By default, users don't have permissions to install anything in ``/usr/local``,
and you can't even change this using ``sudo chown`` or ``sudo chmod``.
2. Other package managers like Homebrew will try to install things to the
same directory. If you plan on using Homebrew in conjunction with Spack,
don't symlink things to ``/usr/local``.
3. If you are on a shared workstation, or don't have sudo privileges, you
can't do this.
If you still want to do this anyway, there are several ways around SIP.
You could disable SIP by booting into recovery mode and running
``csrutil disable``, but this is not recommended, as it can open up your OS
to security vulnerabilities. Another technique is to run ``spack concretize``
and ``spack install`` using ``sudo``. This is also not recommended.
The safest way I've found is to create your installation directories using
sudo, then change ownership back to the user like so:
.. code-block:: bash
for directory in .spack bin contrib include lib man share
do
sudo mkdir -p /usr/local/$directory
sudo chown $(id -un):$(id -gn) /usr/local/$directory
done
Depending on the packages you install in your environment, the exact list of
directories you need to create may vary. You may also find some packages
like Java libraries that install a single file to the installation prefix
instead of in a subdirectory. In this case, the action is the same, just replace
``mkdir -p`` with ``touch`` in the for-loop above.
But again, it's safer just to use the default symlink location.
------------
Installation
------------
To actually concretize the environment, run:
.. code-block:: console
$ spack -e myenv concretize
This will tell you which if any packages are already installed, and alert you
to any conflicting specs.
To actually install these packages and symlink them to your ``view:``
directory, simply run:
.. code-block:: console
$ spack -e myenv install
$ spack env activate myenv
Now, when you type ``which python3``, it should find the one you just installed.
In order to change the default shell to our newer Bash installation, we first
need to add it to this list of acceptable shells. Run:
.. code-block:: console
$ sudo vim /etc/shells
and add the absolute path to your bash executable. Then run:
.. code-block:: console
$ chsh -s /path/to/bash
Now, when you log out and log back in, ``echo $SHELL`` should point to the
newer version of Bash.
---------------------------
Updating Installed Packages
---------------------------
Let's say you upgraded to a new version of macOS, or a new version of Python
was released, and you want to rebuild your entire software stack. To do this,
simply run the following commands:
.. code-block:: console
$ spack env activate myenv
$ spack concretize --force
$ spack install
The ``--force`` flag tells Spack to overwrite its previous concretization
decisions, allowing you to choose a new version of Python. If any of the new
packages like Bash are already installed, ``spack install`` won't re-install
them, it will keep the symlinks in place.
--------------
Uninstallation
--------------
If you decide that Spack isn't right for you, uninstallation is simple.
Just run:
.. code-block:: console
$ spack env activate myenv
$ spack uninstall --all
This will uninstall all packages in your environment and remove the symlinks.

View File

@@ -1,13 +1,13 @@
.. Copyright 2013-2022 Lawrence Livermore National Security, LLC and other
.. Copyright 2013-2021 Lawrence Livermore National Security, LLC and other
Spack Project Developers. See the top-level COPYRIGHT file for details.
SPDX-License-Identifier: (Apache-2.0 OR MIT)
.. _repositories:
=================================
Package Repositories (repos.yaml)
=================================
=============================
Package Repositories
=============================
Spack comes with thousands of built-in package recipes in
``var/spack/repos/builtin/``. This is a **package repository** -- a
@@ -335,7 +335,7 @@ merged YAML from all configuration files, use ``spack config get repos``:
- ~/myrepo
- $spack/var/spack/repos/builtin
Note that, unlike ``spack repo list``, this does not include the
mNote that, unlike ``spack repo list``, this does not include the
namespace, which is read from each repo's ``repo.yaml``.
^^^^^^^^^^^^^^^^^^^^^

View File

@@ -5,6 +5,3 @@ sphinx>=3.4,!=4.1.2
sphinxcontrib-programoutput
sphinx-rtd-theme
python-levenshtein
# Restrict to docutils <0.17 to workaround a list rendering issue in sphinx.
# https://stackoverflow.com/questions/67542699
docutils <0.17

View File

@@ -1,4 +1,4 @@
# Copyright 2013-2022 Lawrence Livermore National Security, LLC and other
# Copyright 2013-2021 Lawrence Livermore National Security, LLC and other
# Spack Project Developers. See the top-level COPYRIGHT file for details.
#
# SPDX-License-Identifier: (Apache-2.0 OR MIT)
@@ -17,7 +17,6 @@ spack:
# Sphinx
- "py-sphinx@3.4:4.1.1,4.1.3:"
- py-sphinxcontrib-programoutput
- py-docutils@:0.16
- py-sphinx-rtd-theme
# VCS
- git

View File

@@ -1,5 +1,5 @@
Name, Supported Versions, Notes, Requirement Reason
Python, 2.7/3.5-3.10, , Interpreter for Spack
Python, 2.6/2.7/3.5-3.9, , Interpreter for Spack
C/C++ Compilers, , , Building software
make, , , Build software
patch, , , Build software
@@ -15,4 +15,3 @@ gnupg2, , , Sign/Verify Buildcaches
git, , , Manage Software Repositories
svn, , Optional, Manage Software Repositories
hg, , Optional, Manage Software Repositories
Python header files, , Optional (e.g. ``python3-dev`` on Debian), Bootstrapping from sources
1 Name Supported Versions Notes Requirement Reason
2 Python 2.7/3.5-3.10 2.6/2.7/3.5-3.9 Interpreter for Spack
3 C/C++ Compilers Building software
4 make Build software
5 patch Build software
15 git Manage Software Repositories
16 svn Optional Manage Software Repositories
17 hg Optional Manage Software Repositories
Python header files Optional (e.g. ``python3-dev`` on Debian) Bootstrapping from sources

1193
lib/spack/docs/workflows.rst Normal file

File diff suppressed because it is too large Load Diff

584
lib/spack/env/cc vendored
View File

@@ -1,7 +1,6 @@
#!/bin/sh
# shellcheck disable=SC2034 # evals in this script fool shellcheck
#!/bin/bash
#
# Copyright 2013-2022 Lawrence Livermore National Security, LLC and other
# Copyright 2013-2021 Lawrence Livermore National Security, LLC and other
# Spack Project Developers. See the top-level COPYRIGHT file for details.
#
# SPDX-License-Identifier: (Apache-2.0 OR MIT)
@@ -21,33 +20,25 @@
# -Wl,-rpath arguments for dependency /lib directories.
#
# Reset IFS to the default: whitespace-separated lists. When we use
# other separators, we set and reset it.
unset IFS
# Separator for lists whose names end with `_list`.
# We pick the alarm bell character, which is highly unlikely to
# conflict with anything. This is a literal bell character (which
# we have to use since POSIX sh does not convert escape sequences
# like '\a' outside of the format argument of `printf`).
# NOTE: Depending on your editor this may look empty, but it is not.
readonly lsep=''
# This is an array of environment variables that need to be set before
# the script runs. They are set by routines in spack.build_environment
# as part of the package installation process.
readonly params="\
SPACK_ENV_PATH
SPACK_DEBUG_LOG_DIR
SPACK_DEBUG_LOG_ID
SPACK_COMPILER_SPEC
SPACK_CC_RPATH_ARG
SPACK_CXX_RPATH_ARG
SPACK_F77_RPATH_ARG
SPACK_FC_RPATH_ARG
SPACK_LINKER_ARG
SPACK_SHORT_SPEC
SPACK_SYSTEM_DIRS"
parameters=(
SPACK_ENV_PATH
SPACK_DEBUG_LOG_DIR
SPACK_DEBUG_LOG_ID
SPACK_COMPILER_SPEC
SPACK_CC_RPATH_ARG
SPACK_CXX_RPATH_ARG
SPACK_F77_RPATH_ARG
SPACK_FC_RPATH_ARG
SPACK_TARGET_ARGS
SPACK_DTAGS_TO_ADD
SPACK_DTAGS_TO_STRIP
SPACK_LINKER_ARG
SPACK_SHORT_SPEC
SPACK_SYSTEM_DIRS
)
# Optional parameters that aren't required to be set
@@ -67,157 +58,60 @@ SPACK_SYSTEM_DIRS"
# Test command is used to unit test the compiler script.
# SPACK_TEST_COMMAND
# die MESSAGE
# Print a message and exit with error code 1.
die() {
echo "[spack cc] ERROR: $*"
# die()
# Prints a message and exits with error 1.
function die {
echo "$@"
exit 1
}
# empty VARNAME
# Return whether the variable VARNAME is unset or set to the empty string.
empty() {
eval "test -z \"\${$1}\""
}
# read input parameters into proper bash arrays.
# SYSTEM_DIRS is delimited by :
IFS=':' read -ra SPACK_SYSTEM_DIRS <<< "${SPACK_SYSTEM_DIRS}"
# setsep LISTNAME
# Set the global variable 'sep' to the separator for a list with name LISTNAME.
# There are three types of lists:
# 1. regular lists end with _list and are separated by $lsep
# 2. directory lists end with _dirs/_DIRS/PATH(S) and are separated by ':'
# 3. any other list is assumed to be separated by spaces: " "
setsep() {
case "$1" in
*_dirs|*_DIRS|*PATH|*PATHS)
sep=':'
;;
*_list)
sep="$lsep"
;;
*)
sep=" "
;;
esac
}
# SPACK_<LANG>FLAGS and SPACK_LDLIBS are split by ' '
IFS=' ' read -ra SPACK_FFLAGS <<< "$SPACK_FFLAGS"
IFS=' ' read -ra SPACK_CPPFLAGS <<< "$SPACK_CPPFLAGS"
IFS=' ' read -ra SPACK_CFLAGS <<< "$SPACK_CFLAGS"
IFS=' ' read -ra SPACK_CXXFLAGS <<< "$SPACK_CXXFLAGS"
IFS=' ' read -ra SPACK_LDFLAGS <<< "$SPACK_LDFLAGS"
IFS=' ' read -ra SPACK_LDLIBS <<< "$SPACK_LDLIBS"
# prepend LISTNAME ELEMENT [SEP]
#
# Prepend ELEMENT to the list stored in the variable LISTNAME,
# assuming the list is separated by SEP.
# Handles empty lists and single-element lists.
prepend() {
varname="$1"
elt="$2"
if empty "$varname"; then
eval "$varname=\"\${elt}\""
else
# Get the appropriate separator for the list we're appending to.
setsep "$varname"
eval "$varname=\"\${elt}${sep}\${$varname}\""
fi
}
# append LISTNAME ELEMENT [SEP]
#
# Append ELEMENT to the list stored in the variable LISTNAME,
# assuming the list is separated by SEP.
# Handles empty lists and single-element lists.
append() {
varname="$1"
elt="$2"
if empty "$varname"; then
eval "$varname=\"\${elt}\""
else
# Get the appropriate separator for the list we're appending to.
setsep "$varname"
eval "$varname=\"\${$varname}${sep}\${elt}\""
fi
}
# extend LISTNAME1 LISTNAME2 [PREFIX]
#
# Append the elements stored in the variable LISTNAME2
# to the list stored in LISTNAME1.
# If PREFIX is provided, prepend it to each element.
extend() {
# Figure out the appropriate IFS for the list we're reading.
setsep "$2"
if [ "$sep" != " " ]; then
IFS="$sep"
fi
eval "for elt in \${$2}; do append $1 \"$3\${elt}\"; done"
unset IFS
}
# preextend LISTNAME1 LISTNAME2 [PREFIX]
#
# Prepend the elements stored in the list at LISTNAME2
# to the list at LISTNAME1, preserving order.
# If PREFIX is provided, prepend it to each element.
preextend() {
# Figure out the appropriate IFS for the list we're reading.
setsep "$2"
if [ "$sep" != " " ]; then
IFS="$sep"
fi
# first, reverse the list to prepend
_reversed_list=""
eval "for elt in \${$2}; do prepend _reversed_list \"$3\${elt}\"; done"
# prepend reversed list to preextend in order
IFS="${lsep}"
for elt in $_reversed_list; do prepend "$1" "$3${elt}"; done
unset IFS
}
# system_dir PATH
# test whether a path is a system directory
system_dir() {
IFS=':' # SPACK_SYSTEM_DIRS is colon-separated
function system_dir {
path="$1"
for sd in $SPACK_SYSTEM_DIRS; do
if [ "${path}" = "${sd}" ] || [ "${path}" = "${sd}/" ]; then
for sd in "${SPACK_SYSTEM_DIRS[@]}"; do
if [ "${path}" == "${sd}" ] || [ "${path}" == "${sd}/" ]; then
# success if path starts with a system prefix
unset IFS
return 0
fi
done
unset IFS
return 1 # fail if path starts no system prefix
}
# Fail with a clear message if the input contains any bell characters.
if eval "[ \"\${*#*${lsep}}\" != \"\$*\" ]"; then
die "Compiler command line contains our separator ('${lsep}'). Cannot parse."
fi
# ensure required variables are set
for param in $params; do
if eval "test -z \"\${${param}:-}\""; then
for param in "${parameters[@]}"; do
if [[ -z ${!param+x} ]]; then
die "Spack compiler must be run from Spack! Input '$param' is missing."
fi
done
# Check if optional parameters are defined
# If we aren't asking for debug flags, don't add them
if [ -z "${SPACK_ADD_DEBUG_FLAGS:-}" ]; then
if [[ -z ${SPACK_ADD_DEBUG_FLAGS+x} ]]; then
SPACK_ADD_DEBUG_FLAGS="false"
fi
# SPACK_ADD_DEBUG_FLAGS must be true/false/custom
is_valid="false"
for param in "true" "false" "custom"; do
if [ "$param" = "$SPACK_ADD_DEBUG_FLAGS" ]; then
if [ "$param" == "$SPACK_ADD_DEBUG_FLAGS" ]; then
is_valid="true"
fi
done
# Exit with error if we are given an incorrect value
if [ "$is_valid" = "false" ]; then
die "SPACK_ADD_DEBUG_FLAGS, if defined, must be one of 'true', 'false', or 'custom'."
if [ "$is_valid" == "false" ]; then
die "SPACK_ADD_DEBUG_FLAGS, if defined, must be one of 'true' 'false' or 'custom'"
fi
# Figure out the type of compiler, the language, and the mode so that
@@ -234,35 +128,35 @@ fi
# ld link
# ccld compile & link
command="${0##*/}"
command=$(basename "$0")
comp="CC"
case "$command" in
cpp)
mode=cpp
debug_flags="-g"
;;
cc|c89|c99|gcc|clang|armclang|icc|icx|pgcc|nvc|xlc|xlc_r|fcc|amdclang|cl.exe|emcc)
cc|c89|c99|gcc|clang|armclang|icc|icx|pgcc|nvc|xlc|xlc_r|fcc)
command="$SPACK_CC"
language="C"
comp="CC"
lang_flags=C
debug_flags="-g"
;;
c++|CC|g++|clang++|armclang++|icpc|icpx|dpcpp|pgc++|nvc++|xlc++|xlc++_r|FCC|amdclang++|em++)
c++|CC|g++|clang++|armclang++|icpc|icpx|pgc++|nvc++|xlc++|xlc++_r|FCC)
command="$SPACK_CXX"
language="C++"
comp="CXX"
lang_flags=CXX
debug_flags="-g"
;;
ftn|f90|fc|f95|gfortran|flang|armflang|ifort|ifx|pgfortran|nvfortran|xlf90|xlf90_r|nagfor|frt|amdflang)
ftn|f90|fc|f95|gfortran|flang|armflang|ifort|ifx|pgfortran|nvfortran|xlf90|xlf90_r|nagfor|frt)
command="$SPACK_FC"
language="Fortran 90"
comp="FC"
lang_flags=F
debug_flags="-g"
;;
f77|xlf|xlf_r|pgf77|amdflang)
f77|xlf|xlf_r|pgf77)
command="$SPACK_F77"
language="Fortran 77"
comp="F77"
@@ -280,7 +174,7 @@ esac
# If any of the arguments below are present, then the mode is vcheck.
# In vcheck mode, nothing is added in terms of extra search paths or
# libraries.
if [ -z "$mode" ] || [ "$mode" = ld ]; then
if [[ -z $mode ]] || [[ $mode == ld ]]; then
for arg in "$@"; do
case $arg in
-v|-V|--version|-dumpversion)
@@ -292,16 +186,16 @@ if [ -z "$mode" ] || [ "$mode" = ld ]; then
fi
# Finish setting up the mode.
if [ -z "$mode" ]; then
if [[ -z $mode ]]; then
mode=ccld
for arg in "$@"; do
if [ "$arg" = "-E" ]; then
if [[ $arg == -E ]]; then
mode=cpp
break
elif [ "$arg" = "-S" ]; then
elif [[ $arg == -S ]]; then
mode=as
break
elif [ "$arg" = "-c" ]; then
elif [[ $arg == -c ]]; then
mode=cc
break
fi
@@ -328,46 +222,42 @@ dtags_to_strip="${SPACK_DTAGS_TO_STRIP}"
linker_arg="${SPACK_LINKER_ARG}"
# Set up rpath variable according to language.
rpath="ERROR: RPATH ARG WAS NOT SET"
eval "rpath=\${SPACK_${comp}_RPATH_ARG:?${rpath}}"
eval rpath=\$SPACK_${comp}_RPATH_ARG
# Dump the mode and exit if the command is dump-mode.
if [ "$SPACK_TEST_COMMAND" = "dump-mode" ]; then
if [[ $SPACK_TEST_COMMAND == dump-mode ]]; then
echo "$mode"
exit
fi
# If, say, SPACK_CC is set but SPACK_FC is not, we want to know. Compilers do not
# *have* to set up Fortran executables, so we need to tell the user when a build is
# about to attempt to use them unsuccessfully.
if [ -z "$command" ]; then
die "Compiler '$SPACK_COMPILER_SPEC' does not have a $language compiler configured."
# Check that at least one of the real commands was actually selected,
# otherwise we don't know what to execute.
if [[ -z $command ]]; then
die "ERROR: Compiler '$SPACK_COMPILER_SPEC' does not support compiling $language programs."
fi
#
# Filter '.' and Spack environment directories out of PATH so that
# this script doesn't just call itself
#
new_dirs=""
IFS=':'
for dir in $PATH; do
IFS=':' read -ra env_path <<< "$PATH"
IFS=':' read -ra spack_env_dirs <<< "$SPACK_ENV_PATH"
spack_env_dirs+=("" ".")
export PATH=""
for dir in "${env_path[@]}"; do
addpath=true
for spack_env_dir in $SPACK_ENV_PATH; do
case "${dir%%/}" in
"$spack_env_dir"|'.'|'')
addpath=false
break
;;
esac
for env_dir in "${spack_env_dirs[@]}"; do
if [[ "${dir%%/}" == "$env_dir" ]]; then
addpath=false
break
fi
done
if [ $addpath = true ]; then
append new_dirs "$dir"
if $addpath; then
export PATH="${PATH:+$PATH:}$dir"
fi
done
unset IFS
export PATH="$new_dirs"
if [ "$mode" = vcheck ]; then
if [[ $mode == vcheck ]]; then
exec "${command}" "$@"
fi
@@ -375,20 +265,16 @@ fi
# It doesn't work with -rpath.
# This variable controls whether they are added.
add_rpaths=true
if [ "$mode" = ld ] || [ "$mode" = ccld ]; then
if [ "${SPACK_SHORT_SPEC#*darwin}" != "${SPACK_SHORT_SPEC}" ]; then
for arg in "$@"; do
if [ "$arg" = "-r" ]; then
if [ "$mode" = ld ] || [ "$mode" = ccld ]; then
add_rpaths=false
break
fi
elif [ "$arg" = "-Wl,-r" ] && [ "$mode" = ccld ]; then
add_rpaths=false
break
fi
done
fi
if [[ ($mode == ld || $mode == ccld) && "$SPACK_SHORT_SPEC" =~ "darwin" ]];
then
for arg in "$@"; do
if [[ ($arg == -r && $mode == ld) ||
($arg == -r && $mode == ccld) ||
($arg == -Wl,-r && $mode == ccld) ]]; then
add_rpaths=false
break
fi
done
fi
# Save original command for debug logging
@@ -411,22 +297,17 @@ input_command="$*"
# The libs variable is initialized here for completeness, and it is also
# used later to inject flags supplied via `ldlibs` on the command
# line. These come into the wrappers via SPACK_LDLIBS.
# The loop below breaks up the command line into these lists of components.
# The lists are all bell-separated to be as flexible as possible, as their
# contents may come from the command line, from ' '-separated lists,
# ':'-separated lists, etc.
include_dirs_list=""
lib_dirs_list=""
rpath_dirs_list=""
system_include_dirs_list=""
system_lib_dirs_list=""
system_rpath_dirs_list=""
isystem_system_include_dirs_list=""
isystem_include_dirs_list=""
libs_list=""
other_args_list=""
#
includes=()
libdirs=()
rpaths=()
system_includes=()
system_libdirs=()
system_rpaths=()
libs=()
other_args=()
isystem_system_includes=()
isystem_includes=()
while [ $# -ne 0 ]; do
@@ -446,32 +327,32 @@ while [ $# -ne 0 ]; do
isystem_was_used=true
if [ -z "$arg" ]; then shift; arg="$1"; fi
if system_dir "$arg"; then
append isystem_system_include_dirs_list "$arg"
isystem_system_includes+=("$arg")
else
append isystem_include_dirs_list "$arg"
isystem_includes+=("$arg")
fi
;;
-I*)
arg="${1#-I}"
if [ -z "$arg" ]; then shift; arg="$1"; fi
if system_dir "$arg"; then
append system_include_dirs_list "$arg"
system_includes+=("$arg")
else
append include_dirs_list "$arg"
includes+=("$arg")
fi
;;
-L*)
arg="${1#-L}"
if [ -z "$arg" ]; then shift; arg="$1"; fi
if system_dir "$arg"; then
append system_lib_dirs_list "$arg"
system_libdirs+=("$arg")
else
append lib_dirs_list "$arg"
libdirs+=("$arg")
fi
;;
-l*)
# -loopopt=0 is generated erroneously in autoconf <= 2.69,
# and passed by ifx to the linker, which confuses it with a
# and passed by ifx to the linker, which confuses it with a
# library. Filter it out.
# TODO: generalize filtering of args with an env var, so that
# TODO: we do not have to special case this here.
@@ -482,76 +363,66 @@ while [ $# -ne 0 ]; do
fi
arg="${1#-l}"
if [ -z "$arg" ]; then shift; arg="$1"; fi
append other_args_list "-l$arg"
other_args+=("-l$arg")
;;
-Wl,*)
arg="${1#-Wl,}"
if [ -z "$arg" ]; then shift; arg="$1"; fi
case "$arg" in
-rpath=*) rp="${arg#-rpath=}" ;;
--rpath=*) rp="${arg#--rpath=}" ;;
-rpath,*) rp="${arg#-rpath,}" ;;
--rpath,*) rp="${arg#--rpath,}" ;;
-rpath|--rpath)
shift; arg="$1"
case "$arg" in
-Wl,*)
rp="${arg#-Wl,}"
;;
*)
die "-Wl,-rpath was not followed by -Wl,*"
;;
esac
;;
"$dtags_to_strip")
: # We want to remove explicitly this flag
;;
*)
append other_args_list "-Wl,$arg"
;;
esac
if [[ "$arg" = -rpath=* ]]; then
rp="${arg#-rpath=}"
elif [[ "$arg" = --rpath=* ]]; then
rp="${arg#--rpath=}"
elif [[ "$arg" = -rpath,* ]]; then
rp="${arg#-rpath,}"
elif [[ "$arg" = --rpath,* ]]; then
rp="${arg#--rpath,}"
elif [[ "$arg" =~ ^-?-rpath$ ]]; then
shift; arg="$1"
if [[ "$arg" != -Wl,* ]]; then
die "-Wl,-rpath was not followed by -Wl,*"
fi
rp="${arg#-Wl,}"
elif [[ "$arg" = "$dtags_to_strip" ]] ; then
: # We want to remove explicitly this flag
else
other_args+=("-Wl,$arg")
fi
;;
-Xlinker,*)
arg="${1#-Xlinker,}"
if [ -z "$arg" ]; then shift; arg="$1"; fi
case "$arg" in
-rpath=*) rp="${arg#-rpath=}" ;;
--rpath=*) rp="${arg#--rpath=}" ;;
-rpath|--rpath)
shift; arg="$1"
case "$arg" in
-Xlinker,*)
rp="${arg#-Xlinker,}"
;;
*)
die "-Xlinker,-rpath was not followed by -Xlinker,*"
;;
esac
;;
*)
append other_args_list "-Xlinker,$arg"
;;
esac
if [[ "$arg" = -rpath=* ]]; then
rp="${arg#-rpath=}"
elif [[ "$arg" = --rpath=* ]]; then
rp="${arg#--rpath=}"
elif [[ "$arg" = -rpath ]] || [[ "$arg" = --rpath ]]; then
shift; arg="$1"
if [[ "$arg" != -Xlinker,* ]]; then
die "-Xlinker,-rpath was not followed by -Xlinker,*"
fi
rp="${arg#-Xlinker,}"
else
other_args+=("-Xlinker,$arg")
fi
;;
-Xlinker)
if [ "$2" = "-rpath" ]; then
if [ "$3" != "-Xlinker" ]; then
if [[ "$2" == "-rpath" ]]; then
if [[ "$3" != "-Xlinker" ]]; then
die "-Xlinker,-rpath was not followed by -Xlinker,*"
fi
shift 3;
rp="$1"
elif [ "$2" = "$dtags_to_strip" ]; then
elif [[ "$2" = "$dtags_to_strip" ]] ; then
shift # We want to remove explicitly this flag
else
append other_args_list "$1"
other_args+=("$1")
fi
;;
*)
if [ "$1" = "$dtags_to_strip" ]; then
if [[ "$1" = "$dtags_to_strip" ]] ; then
: # We want to remove explicitly this flag
else
append other_args_list "$1"
other_args+=("$1")
fi
;;
esac
@@ -559,9 +430,9 @@ while [ $# -ne 0 ]; do
# test rpaths against system directories in one place.
if [ -n "$rp" ]; then
if system_dir "$rp"; then
append system_rpath_dirs_list "$rp"
system_rpaths+=("$rp")
else
append rpath_dirs_list "$rp"
rpaths+=("$rp")
fi
fi
shift
@@ -574,15 +445,16 @@ done
# See the gmake manual on implicit rules for details:
# https://www.gnu.org/software/make/manual/html_node/Implicit-Variables.html
#
flags_list=""
flags=()
# Add debug flags
if [ "${SPACK_ADD_DEBUG_FLAGS}" = "true" ]; then
extend flags_list debug_flags
if [ "${SPACK_ADD_DEBUG_FLAGS}" == "true" ]; then
flags=("${flags[@]}" "${debug_flags}")
# If a custom flag is requested, derive from environment
elif [ "$SPACK_ADD_DEBUG_FLAGS" = "custom" ]; then
extend flags_list SPACK_DEBUG_FLAGS
elif [ "$SPACK_ADD_DEBUG_FLAGS" == "custom" ]; then
IFS=' ' read -ra SPACK_DEBUG_FLAGS <<< "$SPACK_DEBUG_FLAGS"
flags=("${flags[@]}" "${SPACK_DEBUG_FLAGS[@]}")
fi
# Fortran flags come before CPPFLAGS
@@ -590,8 +462,7 @@ case "$mode" in
cc|ccld)
case $lang_flags in
F)
extend flags_list SPACK_FFLAGS
;;
flags=("${flags[@]}" "${SPACK_FFLAGS[@]}") ;;
esac
;;
esac
@@ -599,8 +470,7 @@ esac
# C preprocessor flags come before any C/CXX flags
case "$mode" in
cpp|as|cc|ccld)
extend flags_list SPACK_CPPFLAGS
;;
flags=("${flags[@]}" "${SPACK_CPPFLAGS[@]}") ;;
esac
@@ -609,67 +479,67 @@ case "$mode" in
cc|ccld)
case $lang_flags in
C)
extend flags_list SPACK_CFLAGS
;;
flags=("${flags[@]}" "${SPACK_CFLAGS[@]}") ;;
CXX)
extend flags_list SPACK_CXXFLAGS
;;
flags=("${flags[@]}" "${SPACK_CXXFLAGS[@]}") ;;
esac
# prepend target args
preextend flags_list SPACK_TARGET_ARGS
flags=(${SPACK_TARGET_ARGS[@]} "${flags[@]}")
;;
esac
# Linker flags
case "$mode" in
ld|ccld)
extend flags_list SPACK_LDFLAGS
;;
flags=("${flags[@]}" "${SPACK_LDFLAGS[@]}") ;;
esac
# On macOS insert headerpad_max_install_names linker flag
if [ "$mode" = ld ] || [ "$mode" = ccld ]; then
if [ "${SPACK_SHORT_SPEC#*darwin}" != "${SPACK_SHORT_SPEC}" ]; then
case "$mode" in
ld)
append flags_list "-headerpad_max_install_names" ;;
ccld)
append flags_list "-Wl,-headerpad_max_install_names" ;;
esac
fi
if [[ ($mode == ld || $mode == ccld) && "$SPACK_SHORT_SPEC" =~ "darwin" ]];
then
case "$mode" in
ld)
flags=("${flags[@]}" -headerpad_max_install_names) ;;
ccld)
flags=("${flags[@]}" "-Wl,-headerpad_max_install_names") ;;
esac
fi
if [ "$mode" = ccld ] || [ "$mode" = ld ]; then
if [ "$add_rpaths" != "false" ]; then
IFS=':' read -ra rpath_dirs <<< "$SPACK_RPATH_DIRS"
if [[ $mode == ccld || $mode == ld ]]; then
if [[ "$add_rpaths" != "false" ]] ; then
# Append RPATH directories. Note that in the case of the
# top-level package these directories may not exist yet. For dependencies
# it is assumed that paths have already been confirmed.
extend rpath_dirs_list SPACK_RPATH_DIRS
rpaths=("${rpaths[@]}" "${rpath_dirs[@]}")
fi
fi
if [ "$mode" = ccld ] || [ "$mode" = ld ]; then
extend lib_dirs_list SPACK_LINK_DIRS
IFS=':' read -ra link_dirs <<< "$SPACK_LINK_DIRS"
if [[ $mode == ccld || $mode == ld ]]; then
libdirs=("${libdirs[@]}" "${link_dirs[@]}")
fi
# add RPATHs if we're in in any linking mode
case "$mode" in
ld|ccld)
# Set extra RPATHs
extend lib_dirs_list SPACK_COMPILER_EXTRA_RPATHS
if [ "$add_rpaths" != "false" ]; then
extend rpath_dirs_list SPACK_COMPILER_EXTRA_RPATHS
IFS=':' read -ra extra_rpaths <<< "$SPACK_COMPILER_EXTRA_RPATHS"
libdirs+=("${extra_rpaths[@]}")
if [[ "$add_rpaths" != "false" ]] ; then
rpaths+=("${extra_rpaths[@]}")
fi
# Set implicit RPATHs
if [ "$add_rpaths" != "false" ]; then
extend rpath_dirs_list SPACK_COMPILER_IMPLICIT_RPATHS
IFS=':' read -ra implicit_rpaths <<< "$SPACK_COMPILER_IMPLICIT_RPATHS"
if [[ "$add_rpaths" != "false" ]] ; then
rpaths+=("${implicit_rpaths[@]}")
fi
# Add SPACK_LDLIBS to args
for lib in $SPACK_LDLIBS; do
append libs_list "${lib#-l}"
for lib in "${SPACK_LDLIBS[@]}"; do
libs+=("${lib#-l}")
done
;;
esac
@@ -677,62 +547,63 @@ esac
#
# Finally, reassemble the command line.
#
args_list="$flags_list"
# Includes and system includes first
args=()
# flags assembled earlier
args+=("${flags[@]}")
# Insert include directories just prior to any system include directories
# NOTE: adding ${lsep} to the prefix here turns every added element into two
extend args_list include_dirs_list "-I"
extend args_list isystem_include_dirs_list "-isystem${lsep}"
case "$mode" in
cpp|cc|as|ccld)
if [ "$isystem_was_used" = "true" ]; then
extend args_list SPACK_INCLUDE_DIRS "-isystem${lsep}"
else
extend args_list SPACK_INCLUDE_DIRS "-I"
fi
;;
esac
for dir in "${includes[@]}"; do args+=("-I$dir"); done
for dir in "${isystem_includes[@]}"; do args+=("-isystem" "$dir"); done
extend args_list system_include_dirs_list -I
extend args_list isystem_system_include_dirs_list "-isystem${lsep}"
IFS=':' read -ra spack_include_dirs <<< "$SPACK_INCLUDE_DIRS"
if [[ $mode == cpp || $mode == cc || $mode == as || $mode == ccld ]]; then
if [[ "$isystem_was_used" == "true" ]] ; then
for dir in "${spack_include_dirs[@]}"; do args+=("-isystem" "$dir"); done
else
for dir in "${spack_include_dirs[@]}"; do args+=("-I$dir"); done
fi
fi
for dir in "${system_includes[@]}"; do args+=("-I$dir"); done
for dir in "${isystem_system_includes[@]}"; do args+=("-isystem" "$dir"); done
# Library search paths
extend args_list lib_dirs_list "-L"
extend args_list system_lib_dirs_list "-L"
for dir in "${libdirs[@]}"; do args+=("-L$dir"); done
for dir in "${system_libdirs[@]}"; do args+=("-L$dir"); done
# RPATHs arguments
case "$mode" in
ccld)
if [ -n "$dtags_to_add" ] ; then
append args_list "$linker_arg$dtags_to_add"
fi
extend args_list rpath_dirs_list "$rpath"
extend args_list system_rpath_dirs_list "$rpath"
if [ -n "$dtags_to_add" ] ; then args+=("$linker_arg$dtags_to_add") ; fi
for dir in "${rpaths[@]}"; do args+=("$rpath$dir"); done
for dir in "${system_rpaths[@]}"; do args+=("$rpath$dir"); done
;;
ld)
if [ -n "$dtags_to_add" ] ; then
append args_list "$dtags_to_add"
fi
extend args_list rpath_dirs_list "-rpath${lsep}"
extend args_list system_rpath_dirs_list "-rpath${lsep}"
if [ -n "$dtags_to_add" ] ; then args+=("$dtags_to_add") ; fi
for dir in "${rpaths[@]}"; do args+=("-rpath" "$dir"); done
for dir in "${system_rpaths[@]}"; do args+=("-rpath" "$dir"); done
;;
esac
# Other arguments from the input command
extend args_list other_args_list
args+=("${other_args[@]}")
# Inject SPACK_LDLIBS, if supplied
extend args_list libs_list "-l"
for lib in "${libs[@]}"; do
args+=("-l$lib");
done
full_command_list="$command"
extend full_command_list args_list
full_command=("$command" "${args[@]}")
# prepend the ccache binary if we're using ccache
if [ -n "$SPACK_CCACHE_BINARY" ]; then
case "$lang_flags" in
C|CXX) # ccache only supports C languages
prepend full_command_list "${SPACK_CCACHE_BINARY}"
full_command=("${SPACK_CCACHE_BINARY}" "${full_command[@]}")
# workaround for stage being a temp folder
# see #3761#issuecomment-294352232
export CCACHE_NOHASHDIR=yes
@@ -741,36 +612,25 @@ if [ -n "$SPACK_CCACHE_BINARY" ]; then
fi
# dump the full command if the caller supplies SPACK_TEST_COMMAND=dump-args
if [ -n "${SPACK_TEST_COMMAND=}" ]; then
case "$SPACK_TEST_COMMAND" in
dump-args)
IFS="$lsep"
for arg in $full_command_list; do
echo "$arg"
done
unset IFS
exit
;;
dump-env-*)
var=${SPACK_TEST_COMMAND#dump-env-}
eval "printf '%s\n' \"\$0: \$var: \$$var\""
;;
*)
die "Unknown test command: '$SPACK_TEST_COMMAND'"
;;
esac
if [[ $SPACK_TEST_COMMAND == dump-args ]]; then
IFS="
" && echo "${full_command[*]}"
exit
elif [[ $SPACK_TEST_COMMAND =~ dump-env-* ]]; then
var=${SPACK_TEST_COMMAND#dump-env-}
echo "$0: $var: ${!var}"
elif [[ -n $SPACK_TEST_COMMAND ]]; then
die "ERROR: Unknown test command"
fi
#
# Write the input and output commands to debug logs if it's asked for.
#
if [ "$SPACK_DEBUG" = TRUE ]; then
if [[ $SPACK_DEBUG == TRUE ]]; then
input_log="$SPACK_DEBUG_LOG_DIR/spack-cc-$SPACK_DEBUG_LOG_ID.in.log"
output_log="$SPACK_DEBUG_LOG_DIR/spack-cc-$SPACK_DEBUG_LOG_ID.out.log"
echo "[$mode] $command $input_command" >> "$input_log"
echo "[$mode] ${full_command_list}" >> "$output_log"
echo "[$mode] ${full_command[*]}" >> "$output_log"
fi
# Execute the full command, preserving spaces with IFS set
# to the alarm bell separator.
IFS="$lsep"; exec $full_command_list
exec "${full_command[@]}"

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@@ -1 +0,0 @@
../cc

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@@ -1 +0,0 @@
../cc

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@@ -1 +0,0 @@
../cc

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@@ -1 +0,0 @@
../cc

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@@ -1 +0,0 @@
../cpp

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@@ -1 +0,0 @@
../fc

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@@ -1,4 +1,4 @@
# Copyright 2013-2022 Lawrence Livermore National Security, LLC and other
# Copyright 2013-2021 Lawrence Livermore National Security, LLC and other
# Spack Project Developers. See the top-level COPYRIGHT file for details.
#
# SPDX-License-Identifier: (Apache-2.0 OR MIT)
@@ -6,54 +6,24 @@
"""This module contains the following external, potentially separately
licensed, packages that are included in Spack:
altgraph
--------
* Homepage: https://altgraph.readthedocs.io/en/latest/index.html
* Usage: dependency of macholib
* Version: 0.17.2
archspec
--------
* Homepage: https://pypi.python.org/pypi/archspec
* Usage: Labeling, comparison and detection of microarchitectures
* Version: 0.1.2 (commit 85757b6666422fca86aa882a769bf78b0f992f54)
* Version: 0.1.2 (commit 4dbf253daf37e4a008e4beb6489f347b4a35aed4)
argparse
--------
* Homepage: https://pypi.python.org/pypi/argparse
* Usage: We include our own version to be Python 3.X compatible.
* Usage: We include our own version to be Python 2.6 compatible.
* Version: 1.4.0
* Note: This package has been slightly modified to improve
error message formatting. See the following commit if the
vendored copy ever needs to be updated again:
https://github.com/spack/spack/pull/6786/commits/dfcef577b77249106ea4e4c69a6cd9e64fa6c418
astunparse
----------------
* Homepage: https://github.com/simonpercivall/astunparse
* Usage: Unparsing Python ASTs for package hashes in Spack
* Version: 1.6.3 (plus modifications)
* Note: This is in ``spack.util.unparse`` because it's very heavily
modified, and we want to track coverage for it.
Specifically, we have modified this library to generate consistent unparsed ASTs
regardless of the Python version. It is based on:
1. The original ``astunparse`` library;
2. Modifications for consistency;
3. Backports from the ``ast.unparse`` function in Python 3.9 and later
The unparsing is now mostly consistent with upstream ``ast.unparse``, so if
we ever require Python 3.9 or higher, we can drop this external package.
attrs
----------------
* Homepage: https://github.com/python-attrs/attrs
* Usage: Needed by jsonschema.
* Version: 21.2.0 (83d3cd70f90a3f4d19ee8b508e58d1c58821c0ad)
ctest_log_parser
----------------
@@ -67,43 +37,49 @@
* Homepage: https://pypi.python.org/pypi/distro
* Usage: Provides a more stable linux distribution detection.
* Version: 1.6.0 (64946a1e2a9ff529047070657728600e006c99ff)
* Note: Last version supporting Python 2.7
* Version: 1.0.4 (last version supporting Python 2.6)
functools32
-----------
* Homepage: https://github.com/MiCHiLU/python-functools32
* Usage: Needed by jsonschema when using Python 2.7.
* Version: 3.2.3-2
functools
---------
* Homepage: https://github.com/python/cpython/blob/2.7/Lib/functools.py
* Usage: Used for implementation of total_ordering.
* Version: Unversioned
* Note: This is the functools.total_ordering implementation
from Python 2.7 backported so we can run on Python 2.6.
jinja2
------
* Homepage: https://pypi.python.org/pypi/Jinja2
* Usage: A modern and designer-friendly templating language for Python.
* Version: 2.11.3 (last version supporting Python 2.7)
* Version: 2.10
jsonschema
----------
* Homepage: https://pypi.python.org/pypi/jsonschema
* Usage: An implementation of JSON Schema for Python.
* Version: 3.2.0 (last version before 2.7 and 3.6 support was dropped)
* Note: We don't include tests or benchmarks; just what Spack needs.
macholib
--------
* Homepage: https://macholib.readthedocs.io/en/latest/index.html#
* Usage: Manipulation of Mach-o binaries for relocating macOS buildcaches on Linux
* Version: 1.15.2
* Version: 2.4.0 (last version before functools32 dependency was added)
* Note: functools32 doesn't support Python 2.6 or 3.0, so jsonschema
cannot be upgraded any further until we drop 2.6.
Also, jsonschema/validators.py has been modified NOT to try to import
requests (see 7a1dd517b8).
markupsafe
----------
* Homepage: https://pypi.python.org/pypi/MarkupSafe
* Usage: Implements a XML/HTML/XHTML Markup safe string for Python.
* Version: 1.1.1 (last version supporting Python 2.7)
* Version: 1.0
orderddict
----------
* Homepage: https://pypi.org/project/ordereddict/
* Usage: A drop-in substitute for Py2.7's new collections.OrderedDict
that works in Python 2.4-2.6.
* Version: 1.1
py
--
@@ -112,16 +88,6 @@
* Usage: Needed by pytest. Library with cross-python path,
ini-parsing, io, code, and log facilities.
* Version: 1.4.34 (last version supporting Python 2.6)
* Note: This packages has been modified:
* https://github.com/pytest-dev/py/pull/186 was backported
pyrsistent
----------
* Homepage: http://github.com/tobgu/pyrsistent/
* Usage: Needed by `jsonschema`
* Version: 0.16.1 (last version supporting Python 2.7)
* Note: We only include the parts needed for `jsonschema`.
pytest
------
@@ -152,6 +118,20 @@
* Homepage: https://pypi.python.org/pypi/six
* Usage: Python 2 and 3 compatibility utilities.
* Version: 1.16.0
* Version: 1.11.0
macholib
--------
* Homepage: https://macholib.readthedocs.io/en/latest/index.html#
* Usage: Manipulation of Mach-o binaries for relocating macOS buildcaches on Linux
* Version: 1.12
altgraph
--------
* Homepage: https://altgraph.readthedocs.io/en/latest/index.html
* Usage: dependency of macholib
* Version: 0.16.1
"""

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