Compare commits

...

285 Commits

Author SHA1 Message Date
kwryankrattiger
4583161224 Revert "Revert "Revert "gitlab: Add shared PR mirror to places pipelines look for binaries. (#33746)" (#34087)" (#34153)"
This reverts commit efa1dba9e4.
2022-12-02 12:13:44 -06:00
Todd Gamblin
87562042df concretizer: use only attr() for Spec attributes (#31202)
All Spec attributes are now represented as `attr(attribute_name, ... args ...)`, e.g.
`attr(node, "hdf5")` instead of `node("hdf5")`, as we *have* to maintain the `attr()`
form anyway, and it simplifies the encoding to just maintain one form of the Spec
information.

Background
----------

In #20644, we unified the way conditionals are done in the concretizer, but this
introduced a nasty aspect to the encoding: we have to maintain everything we want in
general conditions in two forms: `predicate(...)` and `attr("predicate", ...)`. For
example, here's the start of the table of spec attributes we had to maintain:

```prolog
node(Package)                      :- attr("node", Package).
virtual_node(Virtual)              :- attr("virtual_node", Virtual).
hash(Package, Hash)                :- attr("hash", Package, Hash).
version(Package, Version)          :- attr("version", Package, Version).
...
```

```prolog
attr("node", Package)              :- node(Package).
attr("virtual_node", Virtual)      :- virtual_node(Virtual).
attr("hash", Package, Hash)        :- hash(Package, Hash).
attr("version", Package, Version)  :- version(Package, Version).
...
```

This adds cognitive load to understanding how the concretizer works, as you have to
understand the equivalence between the two forms of spec attributes. It also makes the
general condition logic in #20644 hard to explain, and it's easy to forget to add a new
equivalence to this list when adding new spec attributes (at least two people have been
bitten by this).

Solution
--------

- [x] remove the equivalence list from `concretize.lp`
- [x] simplify `spec_clauses()`, `condition()`, and other functions in `asp.py` that need
      to deal with `Spec` attributes.
- [x] Convert all old-form spec attributes in `concretize.lp` to the `attr()` form
- [x] Simplify `display.lp`, where we also had to maintain a list of spec attributes. Now
      we only need to show `attr/2`, `attr/3`, and `attr/4`.
- [x] Simplify model extraction logic in `asp.py`.

Performance
-----------

This seems to result in a smaller grounded problem (as there are no longer duplicated
`attr("foo", ...)` / `foo(...)` predicates in the program), but it also adds a slight
performance overhead vs. develop. Ultimately, simplifying the encoding will be a win,
particularly for improving error messages.

Notes
-----

This will simplify future node refactors in `concretize.lp` (e.g., not identifying nodes
by package name, which we need for separate build dependencies).

I'm still not entirely used to reading `attr()` notation, but I thnk it's ultimately
clearer than what we did before. We need more uniform naming, and it's now clear what is
part of a solution. We should probably continue making the encoding of `concretize.lp`
simpler and more self-explanatory. It may make sense to rename `attr` to something like
`node_attr` and to simplify the names of node attributes. It also might make sense to do
something similar for other types of predicates in `concretize.lp`.
2022-12-02 18:56:18 +01:00
Manuela Kuhn
10d10b612a py-keyrings-alt: add 4.2.0 (#34262)
* py-keyrings-alt: add 4.2.0

* Add missing py-jaraco-classes dependency
2022-12-02 09:08:53 -07:00
iarspider
69dd742dc9 Add checksum for py-hatchling 1.8.1 (#34260) 2022-12-02 09:29:38 -06:00
Tamara Dahlgren
18efd817b1 Bugfix: Fetch should not force use of curl to check url existence (#34225)
* Bugfix: Fetch should not force use of curl to check url existence

* Switch type hints from comments to actual hints
2022-12-02 04:50:23 -07:00
Manuela Kuhn
65a5369d6a py-flask: add 2.2.2 and fix dependencies for py-werkzeug and py-markupsafe (#32849)
* py-flask: add 2.2.2, py-werkzeug: add 2.2.2, py-markupsafe: add 2.1.1

* Remove py-dataclasses dependency
2022-12-01 22:56:18 -07:00
iarspider
f66ec00fa9 Herwig3: make njet, vbfnlo dependencies optional... (#33941)
* Herwig3: make njet, vbfnlo dependencies optional...
  also drop openloops dependency when building on PowerPC
* Update package.py
2022-12-01 17:19:46 -08:00
Manuela Kuhn
f63fb2f521 py-twine: add 4.0.1, py-readme-renderer: add 37.3 (#34203)
* py-twine: add 4.0.1

* Remove py-setuptools as run dependency
2022-12-01 12:29:10 -06:00
Annop Wongwathanarat
dfa00f5a8d acfl: add post-installation check by running examples (#34172) 2022-12-01 09:47:59 -07:00
Alec Scott
6602780657 Add py-python-lsp-server and dependencies (#34149)
* Add py-python-lsp-server and dependencies

* Update var/spack/repos/builtin/packages/py-python-lsp-server/package.py

Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>

* Relax version range constraints on py-python-lsp-jsonrpc and add missing dep

* Add runtime dependency flag to setuptools dependencies

* Remove unused python@3.6: dependency and move setuptools-scm to build dep only

Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>
2022-12-01 09:34:49 -07:00
iarspider
8420c610fa gnuplot: make readline optional (#34179)
* gnuplot: make readline optional
* Update package.py

Co-authored-by: iarspider <iarspider@users.noreply.github.com>
2022-12-01 09:11:14 -07:00
Greg Becker
b139cab687 conditional variant values: allow boolean (#33939) 2022-12-01 08:25:57 +01:00
Adam J. Stewart
99fcc57607 py-scipy: hardcode to use blis.pc (#34171) 2022-11-30 12:29:20 -08:00
Larry Knox
5a394d37b7 Add HDF5 version 1.13.3. (#34165)
* Add HDF5 version 1.13.3.
* Remove maintainers no longer with The HDFGroup.
* Fix indentation.
2022-11-30 11:23:38 -08:00
Loïc Pottier
472074cb7c redis-plus-plus: newer version and added TLS support (#34197)
Signed-off-by: Loïc Pottier <pottier1@llnl.gov>
2022-11-30 11:18:47 -08:00
Adam J. Stewart
45c8d7f457 py-segmentation-models-pytorch: add v0.3.1 (#34214) 2022-11-30 10:58:27 -08:00
Edward Hartnett
dce1f01f1a new w3emc version (#34219)
* updated version of w3emc package
* fixed sha
2022-11-30 10:54:45 -08:00
Sam Grayson
03cc83bc67 Add py-yt 4.x versions (#30418)
* Add py-yt 4.x versions

* Fix spelling

* Add yt dependencies

* Refine cython dependency

* Tweak depends_on for py-yt 4.x

* Apply suggestions from code review

Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>

* Fix comments from code review

* Fix formatting

* Fix stuff

* Fix constraints

* Update py-yt to 4.1.2

* Updated packages

* Fix py-tomli checksum

* Remove `expand` from `py-tomli/package.py`

* Respond to Adam's comments

* Update checksums

* Update checksusm

* Respond to comments

Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>
2022-11-30 12:03:26 -06:00
eugeneswalker
f452741e3d e4s ci: use 2022-12-01 runner images (#34212) 2022-11-30 09:52:30 -08:00
eugeneswalker
99b68e646d e4s ci: hpx: set max_cpu_count=512 (#33977) 2022-11-30 09:16:57 -08:00
iarspider
f78c8265f4 Add checksum for py-kiwisolver 1.4.4 (#34121) 2022-11-30 09:18:18 -06:00
iarspider
5d3efbba14 Fix recipe for py-onnx-runtime (#34130)
* Fix recipe

* Update package.py

* Update recipe following review

* Update var/spack/repos/builtin/packages/py-onnx-runtime/package.py

Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>

* remove unused imports

* Update package.py

Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>
2022-11-30 09:17:22 -06:00
Sajid Ali
7423f52cd3 PMIx: enable python bindings (#34107) 2022-11-30 15:55:24 +01:00
Massimiliano Culpo
43d93f7773 Deduplicate code to propagate module changes across MRO (#34157) 2022-11-30 11:10:42 +01:00
Harmen Stoppels
f8dec3e87f Single pass text replacement (#34180) 2022-11-30 10:21:51 +01:00
Manuela Kuhn
ef06b9db5b py-bidscoin, py-multiecho: add new packages (#34168) 2022-11-29 17:37:50 -07:00
Todd Gamblin
c64c9649be debug: move "nonexistent config path" message to much higher verbosity level (#34201)
We currently report that searched config paths don't exist at debug level 1, which
clutters the output quite a bit:

```console
> spack -d solve --fresh --show asp hdf5 > hdf5.lp
==> [2022-11-29-14:18:21.035133] Skipping nonexistent config path /Users/gamblin2/src/spack/etc/spack/darwin/concretizer.yaml
==> [2022-11-29-14:18:21.035151] Skipping nonexistent config path /Users/gamblin2/.spack/concretizer.yaml
==> [2022-11-29-14:18:21.035169] Skipping nonexistent config path /Users/gamblin2/.spack/darwin/concretizer.yaml
==> [2022-11-29-14:18:21.035238] Reading config from file /Users/gamblin2/src/spack/etc/spack/defaults/repos.yaml
==> [2022-11-29-14:18:21.035996] Skipping nonexistent config path /Users/gamblin2/src/spack/etc/spack/defaults/darwin/repos.yaml
==> [2022-11-29-14:18:21.036021] Skipping nonexistent config path /etc/spack/repos.yaml
==> [2022-11-29-14:18:21.036039] Skipping nonexistent config path /etc/spack/darwin/repos.yaml
==> [2022-11-29-14:18:21.036057] Skipping nonexistent config path /Users/gamblin2/src/spack/etc/spack/repos.yaml
==> [2022-11-29-14:18:21.036072] Skipping nonexistent config path /Users/gamblin2/src/spack/etc/spack/darwin/repos.yaml
==> [2022-11-29-14:18:21.036088] Skipping nonexistent config path /Users/gamblin2/.spack/repos.yaml
==> [2022-11-29-14:18:21.036105] Skipping nonexistent config path /Users/gamblin2/.spack/darwin/repos.yaml
==> [2022-11-29-14:18:21.071828] Reading config from file /Users/gamblin2/src/spack/etc/spack/defaults/config.yaml
==> [2022-11-29-14:18:21.081628] Skipping nonexistent config path /Users/gamblin2/src/spack/etc/spack/defaults/darwin/config.yaml
==> [2022-11-29-14:18:21.081669] Skipping nonexistent config path /etc/spack/config.yaml
==> [2022-11-29-14:18:21.081692] Skipping nonexistent config path /etc/spack/darwin/config.yaml
==> [2022-11-29-14:18:21.081712] Skipping nonexistent config path /Users/gamblin2/src/spack/etc/spack/config.yaml
==> [2022-11-29-14:18:21.081731] Skipping nonexistent config path /Users/gamblin2/src/spack/etc/spack/darwin/config.yaml
==> [2022-11-29-14:18:21.081748] Skipping nonexistent config path /Users/gamblin2/.spack/config.yaml
==> [2022-11-29-14:18:21.081764] Skipping nonexistent config path /Users/gamblin2/.spack/darwin/config.yaml
==> [2022-11-29-14:18:21.134909] Reading config from file /Users/gamblin2/src/spack/etc/spack/defaults/packages.yaml
==> [2022-11-29-14:18:21.148695] Reading config from file /Users/gamblin2/src/spack/etc/spack/defaults/darwin/packages.yaml
==> [2022-11-29-14:18:21.152555] Skipping nonexistent config path /etc/spack/packages.yaml
==> [2022-11-29-14:18:21.152582] Skipping nonexistent config path /etc/spack/darwin/packages.yaml
==> [2022-11-29-14:18:21.152601] Skipping nonexistent config path /Users/gamblin2/src/spack/etc/spack/packages.yaml
==> [2022-11-29-14:18:21.152620] Skipping nonexistent config path /Users/gamblin2/src/spack/etc/spack/darwin/packages.yaml
==> [2022-11-29-14:18:21.152637] Skipping nonexistent config path /Users/gamblin2/.spack/packages.yaml
==> [2022-11-29-14:18:21.152654] Skipping nonexistent config path /Users/gamblin2/.spack/darwin/packages.yaml
==> [2022-11-29-14:18:21.853915] Skipping nonexistent config path /Users/gamblin2/src/spack/etc/spack/defaults/compilers.yaml
==> [2022-11-29-14:18:21.853962] Skipping nonexistent config path /Users/gamblin2/src/spack/etc/spack/defaults/darwin/compilers.yaml
==> [2022-11-29-14:18:21.853987] Skipping nonexistent config path /etc/spack/compilers.yaml
==> [2022-11-29-14:18:21.854007] Skipping nonexistent config path /etc/spack/darwin/compilers.yaml
==> [2022-11-29-14:18:21.854025] Skipping nonexistent config path /Users/gamblin2/src/spack/etc/spack/compilers.yaml
==> [2022-11-29-14:18:21.854043] Skipping nonexistent config path /Users/gamblin2/src/spack/etc/spack/darwin/compilers.yaml
==> [2022-11-29-14:18:21.854060] Skipping nonexistent config path /Users/gamblin2/.spack/compilers.yaml
==> [2022-11-29-14:18:21.854093] Reading config from file /Users/gamblin2/.spack/darwin/compilers.yaml
```

It is very rare that I want to know this much information about config search, so I've
moved this to level 3. Now at level 1, we can see much more clearly what configs were
actually found:

```console
> spack -d solve --fresh --show asp hdf5 > hdf5.lp
==> [2022-11-29-14:19:04.035457] Imported solve from built-in commands
==> [2022-11-29-14:19:04.035818] Imported solve from built-in commands
==> [2022-11-29-14:19:04.037626] Reading config from file /Users/gamblin2/src/spack/etc/spack/defaults/concretizer.yaml
==> [2022-11-29-14:19:04.040033] Reading config from file /Users/gamblin2/src/spack/etc/spack/defaults/repos.yaml
==> [2022-11-29-14:19:04.080852] Reading config from file /Users/gamblin2/src/spack/etc/spack/defaults/config.yaml
==> [2022-11-29-14:19:04.133241] Reading config from file /Users/gamblin2/src/spack/etc/spack/defaults/packages.yaml
==> [2022-11-29-14:19:04.147175] Reading config from file /Users/gamblin2/src/spack/etc/spack/defaults/darwin/packages.yaml
==> [2022-11-29-14:19:05.157896] Reading config from file /Users/gamblin2/.spack/darwin/compilers.yaml
```

You can still get the old messages with `spack -ddd` (to activate debug level 3).
2022-11-29 16:17:13 -08:00
Paul R. C. Kent
2c6b52f137 add 15.0.5, 15.0.6 (#34194) 2022-11-29 15:26:13 -08:00
kwryankrattiger
33422acef0 CI: Update Data and Vis SDK Stack (#34009)
* CI: Update Data and Vis SDK Stack

* Update image to match target deployments (E4S)
* Enable all packages
* Test supported variants of ParaView and VisIt

* Sensei: Update Python hint for newer cmake

* Sensei: add Python3 hint
2022-11-29 14:49:55 -07:00
Stephen Sachs
428f635142 icc@2021.6.0 does not support gcc@12 headers (#34191)
Error message:
```
/shared/spack/opt/spack/linux-amzn2-x86_64_v3/gcc-7.3.1/gcc-12.2.0-4tairupdxg2tg2yhvjdlbs7xbd7wudl3/bin/../include/c++/12.2.0/bits/random.h(104): error: expected a declaration
{ extension using type = unsigned __int128; };
^
```

Co-authored-by: Stephen Sachs <stesachs@amazon.com>
2022-11-29 14:36:48 -05:00
kwryankrattiger
c6c74e98ff Dav sdk catalyst (#34010)
* SDK: Add Catalyst 1 and 2 support to the SDK

* LibCatalyst: Remove unused python3 variant from package
2022-11-29 11:28:32 -06:00
Valentin Volkl
d9b438ec76 evtgen: add v02.02.00 (#34187)
* evtgen: add v02.02.00
* format
2022-11-29 09:54:14 -07:00
Cristian Le
c6ee30497c Fix libxc cflag (#34000)
Using standard c99 should not be specific to intel compilers.
2022-11-29 13:45:28 +01:00
Loïc Pottier
1270ae1526 hiredis: updated package definition to use CMake (#33949) 2022-11-29 13:44:50 +01:00
psakievich
d15fead30c Add maintainer to Exawind stack and Trilinos (#34174)
* Add maintainer to Nalu-Wind and Trilinos

* Add to trilinos

* Exawind too

* amr-wind too
2022-11-28 17:23:17 -08:00
Valentin Volkl
23aaaf2d28 genfit: add v02-00-01 (#34159) 2022-11-28 17:09:47 -08:00
Hans Fangohr
56f9c76394 fix typo in path for sanity check (#34117)
- typo breaks install
2022-11-28 16:49:57 -07:00
Sam Grayson
49cda811fc Add new version of snakemake (#34041)
* Add new version of snakemake

* Add myself as a maintainer

* py-retry -> py-reretry

* Added snakemake variants for storage systems

* Updated comments

* Responded to Adam's comments

* Fixed spack style

* Add build/run dependency types
2022-11-28 15:10:10 -07:00
Benjamin Meyers
a97312535a New package: py-statmorph (#34158)
* New package py-statmorph w/ dependecies. Add py-astropy@5.1

* [@spackbot] updating style on behalf of meyersbs

* [py-statmorph,py-astropy,py-pyerfa] minor fixes
2022-11-28 15:46:10 -06:00
Benjamin Meyers
a0180ef741 New package: py-stui (#34156)
* New package py-stui

* [py-stui] add maintainer

* [@spackbot] updating style on behalf of meyersbs

* [py-stui] fix deps
2022-11-28 15:45:40 -06:00
iarspider
d640a573a8 Add checksum for py-rsa 4.9 (#34115)
* Add checksum for py-rsa 4.9

* Update package.py

* Update var/spack/repos/builtin/packages/py-rsa/package.py

Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>

Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>
2022-11-28 14:10:21 -07:00
Cameron Smith
b3679406d0 omegah: new scorec version, fix cuda flags (#34169) 2022-11-28 13:03:27 -08:00
eugeneswalker
587488882a e4s ci: add hdf5-vol-async; remove expired comments (#34110) 2022-11-28 19:35:42 +00:00
Satish Balay
a17844a367 petsc, py-petsc4py: add 3.18.2 (#34161) 2022-11-28 10:51:48 -08:00
Manuela Kuhn
093a37750c py-bidskit: new package and dcm2niix: add 1.0.20220720 (#34162)
* py-bidskit: new package and dcm2niix: add 1.0.20220720

* Remove list_url
2022-11-28 11:05:49 -07:00
iarspider
173cc7e973 Add checksum for py-traitlets 5.3.0 (#34127) 2022-11-28 11:05:35 -07:00
Greg Becker
451e3ff50b warn about removal of deprecated format strings (#34101)
* warn about removal of deprecated format strings

Co-authored-by: becker33 <becker33@users.noreply.github.com>
2022-11-28 10:03:49 -08:00
Manuela Kuhn
523c4c2b63 py-dcm2bids: add new package (#34163) 2022-11-28 10:46:04 -07:00
Thomas-Ulrich
35e5a916bc easi: update package, rework impalajit (#34032) 2022-11-28 15:54:21 +01:00
Annop Wongwathanarat
1374577659 acfl: provides blas, lapack, and fftw-api@3 (#34154) 2022-11-28 14:25:32 +01:00
Hector Martinez-Seara
4c017403db texinfo: add v7.0 (#34150) 2022-11-28 06:22:13 -07:00
Massimiliano Culpo
fdfda72371 Use a module-like object to propagate changes in the MRO, when setting build env (#34059)
This fixes an issue introduced in #32340, which changed the semantics of the "module"
object passed to the "setup_dependent_package" callback.
2022-11-28 14:18:26 +01:00
Harmen Stoppels
efa1dba9e4 Revert "Revert "gitlab: Add shared PR mirror to places pipelines look for binaries. (#33746)" (#34087)" (#34153)
This reverts commit 63e4406514.
2022-11-28 06:06:03 -07:00
Annop Wongwathanarat
2a7ae2a700 armpl-gcc: add post-installation check by running examples (#34086) 2022-11-28 13:55:51 +01:00
Adam J. Stewart
a1b4e1bccd Add type hints to Prefix class (#34135) 2022-11-28 13:49:57 +01:00
Alec Scott
066ec31604 Add restic v0.14.0 (#34148) 2022-11-28 08:39:37 +01:00
Alec Scott
bb1888dbd4 direnv: add v2.32.2 (#34147) 2022-11-27 22:09:53 +01:00
Michael Kuhn
bc17b6cefb rust: add 1.65.0 (#34124) 2022-11-27 16:03:46 +01:00
Umashankar Sivakumar
46a0cd8e55 SingularityCE: Add conmon+squashfs as dependencies (#33891) 2022-11-27 13:05:49 +01:00
fpruvost
b2ceb23165 pastix: add new version 6.2.2 (#34066) 2022-11-27 00:33:05 +01:00
Harmen Stoppels
2fad966139 neovim: fix deptypes (#34060) 2022-11-27 00:23:24 +01:00
Luke Diorio-Toth
0b01c8c950 py-fastpath: new package (#34142)
* py-fastpath: new package

* Update var/spack/repos/builtin/packages/py-fastpath/package.py

Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>

Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>
2022-11-26 15:57:45 -07:00
Eric Berquist
613d0b7e8e emacs: add variant treesitter for Emacs 29+ (#34134) 2022-11-26 23:45:00 +01:00
Wouter Deconinck
21c29ee375 prmon: Add missing depends_on py-numpy, py-pandas when +plot (#34123) 2022-11-26 23:43:25 +01:00
Luke Diorio-Toth
e236339e5a aragorn: add newer versions and URL (#34140) 2022-11-26 23:34:59 +01:00
Luke Diorio-Toth
7a03525c35 minced: add v0.4.2 (#34141) 2022-11-26 23:30:56 +01:00
Hans Fangohr
17ca86a309 Octopus: branch for Octopus development is now "main" (#34128)
Historically, development of the Octopus code was done on the "develop" branch
on https://gitlab.com/octopus-code/octopus but now development takes place on
"main" (since Q3 2022).

The suggestion in this PR to solve the issue is to keep the spack label
`octopus@develop` as this better indicates this is the development branch on git
than `octopus@main`, but of course to use the `main` branch (there is no choice
here - the `develop` branch is not touched anymore). Sticking to
`octopus@develop` as the version label also keeps backwards compatibility.
2022-11-26 15:29:49 -07:00
marcost2
ce71a38703 nvtop: Add 2.0.3, 2.0.4, 3.0.0 and 3.0.1 (#34145)
* And add the option to compile support for Intel GPU's
2022-11-26 21:04:48 +01:00
Satish Balay
12c23f2724 Revert "url_exists related improvements (#34095)" (#34144)
This reverts commit d06fd26c9a.

The problem is that Bitbucket's API forwards download requests to an S3 bucket using a temporary URL. This URL includes a signature for the request, which embeds the HTTP verb. That means only GET requests are allowed, and HEAD requests would fail verification, leading to 403 erros. The same is observed when using `curl -LI ...`
2022-11-26 17:56:36 +00:00
Carlos Bederián
b8ae0fbbf4 amdblis: symlink libblis-mt to libblis (#32819) 2022-11-26 00:33:29 +01:00
Sebastian Ehlert
6b5c86e0be toml-f: add 0.2.4 and 0.3.1 (#34025) 2022-11-25 16:29:58 -07:00
Victoria Cherkas
1ed1b49c9b metkit, fdb: Add latest versions (#33289) 2022-11-25 23:54:51 +01:00
petertea
4265d5e111 Update TotalView versions and website (#33418)
Co-authored-by: Peter Thompson <thompson81@llnl.gov>
Co-authored-by: Tamara Dahlgren <35777542+tldahlgren@users.noreply.github.com>
2022-11-25 23:42:56 +01:00
snehring
8c0fb91d4e ffmpeg: adding version 5.1.2 (#33758)
* ffmpeg: add version 5.1.2 and switch to conditional variants

Also: py-torchvision: restrict ffmpeg dependency
2022-11-25 23:37:17 +01:00
Thomas Madlener
567532b9e5 lcio: Add new version and restrictions on c++ standard (#33997) 2022-11-25 23:08:23 +01:00
Adam J. Stewart
47d59e571e py-pandas: add v1.5.2 (#34091) 2022-11-25 23:03:16 +01:00
Adam J. Stewart
93ff19c9b7 py-pytorch-lightning: add v1.8.3 (#34096) 2022-11-25 22:59:39 +01:00
Harmen Stoppels
2167cbf72c Track locks by (dev, ino); close file handlers between tests (#34122) 2022-11-25 10:57:33 +01:00
Sergey Kosukhin
7a5e527cab zlib: fix shared libraries when '%nvhpc' (#34039) 2022-11-24 20:10:18 +01:00
iarspider
a25868594c Add checksum for py-uncertainties 3.1.7 (#34116) 2022-11-24 12:11:58 -06:00
Brent Huisman
dd5263694b Arbor: Yank v0.5 (#34094)
v0.5 does not build due to a change in setting `arch` introduced in v0.5.2, compatibility with which was not kept in `arbor/package.py`. Since v0.5.2 is compatible with `arbor/package.py`, and is API compatible with v0.5, any users relying on v0.5 can rely on v0.5.2.
2022-11-24 11:19:32 +01:00
Thomas-Ulrich
5fca1c9aff hipsycl: add v0.9.3 (#34052) 2022-11-23 23:14:01 -07:00
Tim Haines
1d7393c281 dyninst: add checksums for all supported versions (#34051) 2022-11-24 03:45:56 +01:00
Jen Herting
f0bc551718 New package: py-kt-legacy (#34104)
* first build of keras-tuner with dataset kt-legacy

* [py-kt-legacy] fixed homepage

* [py-kt-legacy] depends on setuptools

* [py-kt-legacy] fixed import

* [@spackbot] updating style on behalf of qwertos

Co-authored-by: Sid Pendelberry <sid@rit.edu>
Co-authored-by: qwertos <qwertos@users.noreply.github.com>
2022-11-23 19:26:21 -07:00
Adam J. Stewart
46b9a09843 py-cartopy: older versions don't support newer matplotlib (#34109) 2022-11-24 02:44:20 +01:00
Stephen Sachs
c0898565b9 openfoam: Fix openfoam@2012_220610 %intel (add #include <array>) (#34088) 2022-11-24 02:34:40 +01:00
Benjamin Meyers
3018e7f63d Add py-urwid@2.1.2 (#34103)
* Add py-urwid@2.1.2

* [@spackbot] updating style on behalf of meyersbs
2022-11-23 19:25:02 -06:00
Satish Balay
dfa1a42420 petsc, slepc: enable parallel builds (#34024) 2022-11-24 02:16:20 +01:00
Adam J. Stewart
2c8ab85e6a gnuplot: fix build with Apple Clang (#34092) 2022-11-24 01:33:33 +01:00
Nicolas Cornu
b2505aed5c HighFive: bump to 2.6.2 (#34090) 2022-11-24 00:20:36 +01:00
Valentin Volkl
7847d4332e docs: update info on XCode requirements (#34097) 2022-11-24 00:20:09 +01:00
Massimiliano Culpo
70bcbba5eb ecflow: polish recipe (#34043) 2022-11-23 21:38:37 +01:00
Tom Scogland
0182603609 Control Werror by converting to Wno-error (#30882)
Using `-Werror` is good practice for development and testing, but causes us a great
deal of heartburn supporting multiple compiler versions, especially as newer compiler
versions add warnings for released packages.  This PR adds support for suppressing
`-Werror` through spack's compiler wrappers.  There are currently three modes for
the `flags:keep_werror` setting:

* `none`: (default) cancel all `-Werror`, `-Werror=*` and `-Werror-*` flags by
  converting them to `-Wno-error[=]*` flags
* `specific`: preserve explicitly selected warnings as errors, such as
  `-Werror=format-truncation`, but reverse the blanket `-Werror`
* `all`: keeps all `-Werror` flags

These can be set globally in config.yaml, through the config command-line flags, or
overridden by a particular package (some packages use Werror as a proxy for determining
support for other compiler features).  We chose to use this approach because:

1. removing `-Werror` flags entirely broke *many* build systems, especially autoconf
   based ones, because of things like checking `-Werror=feature` and making the
   assumption that if that did not error other flags related to that feature would also work
2. Attempting to preserve `-Werror` in some phases but not others caused similar issues
3. The per-package setting came about because some packages, even with all these
   protections, still use `-Werror` unsafely.  Currently there are roughly 3 such packages
   known.
2022-11-23 12:29:17 -08:00
Jen Herting
bf1b846f26 [py-antlr4-python3-runtime] Added versions 4.9.3 and 4.10 (#34102)
* Working updates to py-antlr4-python3-runtime and py-omegaconf

* [py-antlr4-python3-runtime] added version 4.9.3

* [@spackbot] updating style on behalf of qwertos

Co-authored-by: Benjamin Meyers <bsmits@rit.edu>
Co-authored-by: qwertos <qwertos@users.noreply.github.com>
2022-11-23 12:30:11 -07:00
Harmen Stoppels
d06fd26c9a url_exists related improvements (#34095)
For reasons beyond me Python thinks it's a great idea to upgrade HEAD
requests to GET requests when following redirects. So, this PR adds a
better `HTTPRedirectHandler`, and also moves some ad-hoc logic around
for dealing with disabling SSL certs verification.

Also, I'm stumped by the fact that Spack's `url_exists` does not use
HEAD requests at all, so in certain cases Spack awkwardly downloads
something first to see if it can download it, and then downloads it
again because it knows it can download it. So, this PR ensures that both
urllib and botocore use HEAD requests.

Finally, it also removes some things that were there to support currently
unsupported Python versions.

Notice that the HTTP spec [section 10.3.2](https://datatracker.ietf.org/doc/html/rfc2616.html#section-10.3.2) just talks about how to deal
with POST request on redirect (whether to follow or not):

>   If the 301 status code is received in response to a request other
>   than GET or HEAD, the user agent MUST NOT automatically redirect the
>   request unless it can be confirmed by the user, since this might
>   change the conditions under which the request was issued.

>   Note: When automatically redirecting a POST request after
>   receiving a 301 status code, some existing HTTP/1.0 user agents
>   will erroneously change it into a GET request.

Python has a comment about this, they choose to go with the "erroneous change".
But they then mess up the HEAD request while following the redirect, probably
because they were too busy discussing how to deal with POST.

See https://github.com/python/cpython/pull/99731
2022-11-23 19:26:24 +00:00
kwryankrattiger
5d2c9636ff E4S: Conservatively add ecp-data-vis-sdk (#33621)
* E4S: Conservatively add ecp-data-vis-sdk

* Remove ascent from CUDA SDK stack to stop hanging on Dray

* Adios2: Newer FindPython uses Python_EXECUTABLE
2022-11-23 11:01:30 -08:00
Harmen Stoppels
63e4406514 Revert "gitlab: Add shared PR mirror to places pipelines look for binaries. (#33746)" (#34087)
This reverts commit 5c4137baf1.
2022-11-23 10:41:52 -08:00
Jen Herting
d56380fc07 New package: py-imagecodecs (#34098)
* [libjpeg-turbo] Added version 2.1.3

* [imagecodecs] Added jpeg deependency commented outconglicting libraries

* [WIP]

* [py-imagecodecs] modifying setup.py to work with spack install locations

* [py-imagecodecs] Removed comments and unneeded dependencies

* [py-imagecodecs] removed some comments and fixed up some flake8 complaints

* [py-imagecodecs] flake8

* [py-imagecodecs] fixed import

* [@spackbot] updating style on behalf of qwertos

Co-authored-by: James A Zilberman <jazrc@rit.edu>
Co-authored-by: qwertos <qwertos@users.noreply.github.com>
2022-11-23 10:39:45 -07:00
Adam J. Stewart
f89cc96b0c libelf: fix build on macOS arm64 (#34036) 2022-11-23 09:27:44 -07:00
iarspider
cf952d41d8 Add checksum for py-cffi 1.15.1 (#34081) 2022-11-23 08:52:21 -07:00
iarspider
5f737c5a71 Add checksum for py-parsimonious 0.10.0 (#34079) 2022-11-23 08:59:30 -06:00
Bernhard Kaindl
a845b1f984 openloops: add check for added Fortran compiler (#34014) 2022-11-23 07:59:13 -07:00
Henning Glawe
b8d059e8f4 berkelygw: use mpi variant for scalapack (#33948)
The package.py assumed "+mpi" in many places, without checking for the variant.
This problem went undetected, as a hard dependency on scalapack pulled an mpi
implementation into the dependency chain (this is also fixed).

Also, the +mpi variant is used select between serial and parallel mode:

It has to enable MPI and ScaLAPACK: They are inter-dependent. Compile
fails because of checks for the other if the other is not enabled.

Co-authored-by: Bernhard Kaindl <contact@bernhard.kaindl.dev>
2022-11-23 07:42:03 -07:00
Cory Bloor
1006c77374 rocm: add minimum versions for amdgpu_targets (#34030) 2022-11-23 14:23:38 +01:00
Alec Scott
38d4fd7711 Add conflicts statements to flux-core to limit builds to linux based platforms (#34068) 2022-11-23 06:08:46 -07:00
Harmen Stoppels
643ce586de libxcrypt: add v4.33 (#34069) 2022-11-23 05:36:47 -07:00
Adam J. Stewart
5b3b0130f2 Build System docs: consistent headers (#34047) 2022-11-23 13:35:55 +01:00
Harmen Stoppels
55c77d659e make/ninja: use the right number of jobs (#34057) 2022-11-23 12:35:15 +01:00
Alexander Knieps
fe1c105161 capnproto: update to v0.10.2 (#34063)
Co-authored-by: Alexander Knieps <a.knieps@fz-juelich.de>
2022-11-23 12:32:10 +01:00
Bernhard Kaindl
09f2b6f5f5 boost: At least with older Xcode, boost can't build with lzma (#34075)
Reference: https://lists.boost.org/Archives/boost/2019/11/247380.php
As reported at the end of #33998 and this link, liblzma on older Xcode on
MacOSX 10 misses _lzma_cputhreads, so boost's can't use liblzma on those.
2022-11-23 03:36:22 -07:00
Matthieu Dorier
73fe21ba41 [mochi-margo] fixed dependency to Argobots (#34082) 2022-11-23 03:36:05 -07:00
Jen Herting
81fb87cedf New package: py-rasterstats (#34070)
* Fixed dependencies for rasterstats

* Fixed flake8 errors

* Fix flake8 error

* Cleans up package desc., adds build dependency on setuptools.

* Fixes flake8 error

Co-authored-by: Bailey Brown <bobits@rit.edu>
2022-11-23 02:55:14 -07:00
Tim Haines
7de39c44b1 dyninst: add v12.2.1 (#34050) 2022-11-23 10:13:00 +01:00
Keita Iwabuchi
c902e27e52 Metall package: add v0.22, v0.23, and v0.23.1 (#34073) 2022-11-23 09:57:32 +01:00
Takahiro Ueda
65b991a4c5 form: new version 4.3.0 (#34078) 2022-11-23 09:51:55 +01:00
Mosè Giordano
65520311a6 ccache: add new versions (#34067) 2022-11-23 01:42:44 -07:00
Umar Arshad
def79731d0 span-lite: Add new versions (#34072) 2022-11-23 02:21:58 +01:00
Michael Kuhn
0fd3c9f451 cmd/checksum: allow adding new versions to package (#24532)
This adds super-lazy maintainer mode to `spack checksum`: Instead of
only printing the new checksums to the terminal, `-a` and
`--add-to-package` will add the new checksums to the `package.py` file
and open it in the editor afterwards for final checks.
2022-11-22 16:30:49 -08:00
Adam J. Stewart
c5883fffd7 Python: drop EOL versions (#33898)
This PR removes [end of life](https://endoflife.date/python) versions of Python from Spack. Specifically, this includes all versions of Python older than 3.7.

See https://github.com/spack/spack/discussions/31824 for rationale. Deprecated in #32615. And #28003.

For anyone using software that relies on Python 2, you have a few options:

* Upgrade the software to support Python 3. The `3to2` tool may get you most of the way there, although more complex libraries may need manual tweaking.
* Add Python 2 as an [external package](https://spack.readthedocs.io/en/latest/build_settings.html#external-packages). Many Python libraries do not support Python 2, but you may be able to add older versions that did once upon a time.
* Use Spack 0.19. Spack 0.19 is the last release to officially support Python 3.6 and older
* Create and maintain your own [custom repository](https://spack.readthedocs.io/en/latest/repositories.html). Basically, you would need a package for Python 2 and any other Python 2-specific libraries you need.
2022-11-22 15:02:30 -08:00
Harmen Stoppels
4bf964e6b3 spack uninstall: use topo order (#34053) 2022-11-22 07:22:07 -07:00
Bernhard Kaindl
bcc0fda4e2 berkeleygw: fix build (no change to attribute spec.compiler_flags) (#34019) 2022-11-22 07:13:56 -07:00
iarspider
69987fd323 cpu-features: Fix appending -DBUILD_SHARED_LIBS (#34055)
Also:
* Use the release tarball for v0.7.0 to fix spack warning

Co-authored-by: Bernhard Kaindl <43588962+bernhardkaindl@users.noreply.github.com>
2022-11-22 06:10:34 -07:00
Dominic Hofer
9a16234ed4 eckit: add v1.20.2, v1.16.3 (#33200)
Co-authored-by: Bernhard Kaindl <contact@bernhard.kaindl.dev>
2022-11-22 05:45:17 -07:00
Massimiliano Culpo
bd198312c9 Revert "Warn about removal of deprecated format strings (#33829)" (#34056)
This reverts commit 7f9af8d4a0.
2022-11-22 12:35:36 +01:00
Greg Becker
7f9af8d4a0 Warn about removal of deprecated format strings (#33829)
Co-authored-by: becker33 <becker33@users.noreply.github.com>
2022-11-22 10:56:57 +01:00
John W. Parent
793a7bc6a9 Windows: add registry query and SDK/WDK packages (#33021)
* Add a WindowsRegistryView class, which can query for existing
  package installations on Windows. This is particularly important
  because some Windows packages (including those added here)
  do not allow two simultaneous installs, and this can be
  queried in order to provide a clear error message.
* Consolidate external path detection logic for Windows into
  WindowsKitExternalPaths and WindowsCompilerExternalPaths objects.
* Add external-only packages win-sdk and wgl
* Add win-wdk (including external detection) which depends on
  win-sdk
* Replace prior msmpi implementation with a source-based install
  (depends on win-wdk). This install can control the install
  destination (unlike the binary installation).
* Update MSVC compiler to choose vcvars based on win-sdk dependency
* Provide "msbuild" module-level variable to packages during build
* When creating symlinks on Windows, need to explicitly specify when
  a symlink target is a directory
* executables_in_path no-longer defaults to using PATH (this is
  now expected to be taken care of by the caller)
2022-11-22 00:27:42 -08:00
genric
376afd631c py-kubernetes: add version 25.3.0 (#33915) 2022-11-22 05:46:41 +01:00
Harmen Stoppels
e287c6ac4b gnuconfig: bump with 2022-09-17 (#34035) 2022-11-22 05:31:29 +01:00
Sergey Kosukhin
e864744b60 py-fprettify: new version 0.3.7 (#34040) 2022-11-21 21:26:31 -06:00
Andrew W Elble
5b3af53b10 qiskit: updates (#33877) 2022-11-21 21:10:10 -06:00
Harmen Stoppels
44c22a54c9 Spec traversal: add option for topological ordering (#33817)
Spec traversals can now specify a topological ordering. A topologically-
ordered traversal with input specs X1, X2... will

* include all of X1, X2... and their children
* be ordered such that a given node is guaranteed to appear before any
  of its children in the traversal

Other notes:

* Input specs can be children of other input specs (this is useful if
  a user specifies a set of specs to uninstall: some of those specs
  might be children of others)
* `direction="parents"` will produce a reversed topological order
  (children always come before parents).
* `cover="edges"` will generate a list of edges L such that (a) input
  edges will always appear before output edges and (b) if you create
  a list with the destination of each edge in L the result is
  topologically ordered
2022-11-21 18:33:35 -08:00
Chris Green
f97f37550a libjpeg-turbo: make build_system settings comprehensive (#34046) 2022-11-22 03:15:32 +01:00
Massimiliano Culpo
0e4ee3d352 Speed-up a few unit-tests (#34044)
* test_suite.py: speed up slow test by using mock packages

* Don't resolve the sha during unit-tests

* Skip long-running test that fails, instead of executing it
2022-11-21 23:50:55 +01:00
Brian Van Essen
05fc800db9 Fixed the rdma-core package to find its external library (#33798) 2022-11-21 15:45:47 -07:00
Dom Heinzeller
2387c116ad ecflow: add v5.8.3, update with changes from JCSDA-EMC fork (#34038) 2022-11-21 11:01:52 -07:00
Scott Wittenburg
6411cbd803 ci: restore ability to reproduce gitlab job failures (#33953) 2022-11-21 10:39:03 -06:00
Harmen Stoppels
8ea366b33f uninstall: fix accidental cubic complexity (#34005)
* uninstall: fix accidental cubic complexity

Currently spack uninstall runs in worst case cubic time complexity
thanks to traversal during traversal during traversal while collecting
the specs to be uninstalled.

Also brings down the number of error messages printed to something
linear in the amount of matching specs instead of quadratic.
2022-11-21 16:44:48 +01:00
Drew Whitehouse
9a2fbf373c openvdb: update to v10.0.0 (#33835) 2022-11-21 06:38:28 +01:00
Mosè Giordano
9e1fef8813 texinfo: require also makeinfo executable (#33370)
* texinfo: require also `makeinfo` executable
* texinfo: add versions 6.6, 6.7, 6.8
* texinfo: add `info` and `makeinfo` sanity checks
2022-11-21 05:20:11 +01:00
Alec Scott
f8a6e3ad90 hugo: add v0.106.0 (#34023) 2022-11-21 04:22:32 +01:00
Adam J. Stewart
0706919b09 Python: specify tcl/tk version requirements (#34027) 2022-11-20 19:13:47 -06:00
Wouter Deconinck
b9b93ce272 qt6: new packages (#29555)
* qt6: initial commit of several basic qt6 packages

* Qt6: fix style issues

* [qt6] fix style issues, trailing spaces

* [qt6] rename to qt-* ecosystem; remove imports

* [qt6] rename dependencies; change version strings

* [qt6] list_urls

* [qt6] homepage links

* [qt6] missing closing quotes failed style check

* qt-declarative: use private _versions

Co-authored-by: Seth R. Johnson <johnsonsr@ornl.gov>

* qt-quick3d, qt-quicktimeline, qt-shadertools: use private _versions

* qt-base: rework feature defines and use run_tests

* qt: new version 6.2.4

* flake8 whitespace before comma

* qt-base: variant opengl when +gui

Co-authored-by: Seth R. Johnson <johnsonsr@ornl.gov>

* qt6: rebase and apply new black style

* qt6: apply style isort fixes

* qt6: new version 6.3.0 and 6.3.1

* qt6: add 6.3.0 and 6.3.1 to versions list

* qt6: multi-argument join_path

Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>

* qt-base: fix isort

* qt-shadertools: no cmake_args needed

* qt-declarative: imports up front

* qt-quick3d: fix import

* qt-declarative: remove useless cmake_args

* qt-shadertools: imports and join_path fixes

* qt-quick3d: join_path fixes

* qt-declarative: join_path fixes

* Update features based on gui usage

* Update dependencies, cmake args, mac support

* Update features based on linux

* More updates

* qt-base: fix style

* qt-base: archive_files join_path

* qt-base: new version 6.3.2

* qt-{declarative,quick3d,quicktimeline,shadertools}@6.3.2

* qt-base: require libxcb@1.13: and use system xcb_xinput when on linux

Co-authored-by: Seth R. Johnson <johnsonsr@ornl.gov>
Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>
2022-11-20 20:03:52 -05:00
Pedro Ciambra
87cb9760ce mold: new package for the mold linker (#34017) 2022-11-21 01:32:47 +01:00
Adam J. Stewart
d472e28bfe py-numpy: add v1.23.5 (#34026) 2022-11-21 00:40:37 +01:00
Bernhard Kaindl
dbc81549db krb5: Add new versions 1.19.4 and 1.20.1 (#34021)
Co-authored-by: Bernhard Kaindl <contact@bernhard.kaindl.dev>
2022-11-21 00:39:13 +01:00
Sam Grayson
dc00c4fdae Update dask and related packages (#33925)
* Update dask and related packages

* Update package dependency specs

* Run spack style

* Add new version of locket

* Respond to comments

* Added constraints

* Add version constraints for py-dask+distributed

* Run spack style

* Update var/spack/repos/builtin/packages/py-dask/package.py

Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>

* Deprecated dask versions

* Deprecated more dask and distirbuted

* spack style --fix

Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>
2022-11-20 12:43:32 -06:00
Bernhard Kaindl
f1b9da16c8 bash: Update 5.1 to 5.1.16 (#34022) 2022-11-20 18:36:24 +01:00
Adam J. Stewart
93ce943301 py-torch: add note about MPS variant (#34018) 2022-11-19 18:10:06 -07:00
Jen Herting
632b36ab5d New package: py-ahpy (#34008)
* first build of ahpy

* updated to limit python to >4

* added from spack.package import * to >4

Co-authored-by: Sid Pendelberry <sid@rit.edu>
2022-11-19 12:10:14 -07:00
Paul Romano
94c76c5823 OpenMC: add v0.13.2 (#33903)
* openmc: add v0.13.2

* Fix style formatting

* Update Python version dependency

* Update numpy version dependency
2022-11-19 12:22:58 -06:00
Massimiliano Culpo
45b4cedb7e spack find: remove deprecated "--bootstrap" option (#34015) 2022-11-19 16:09:34 +01:00
Erik Schnetter
6d0a8f78b2 libxcrypt: Disable -Werror (#34013) 2022-11-19 06:29:50 -07:00
Chris Green
409cf185ce package_base.py: Fix #34006: test msg needs to be a string (#34007) 2022-11-19 13:02:51 +01:00
iarspider
602984460d Boost: enable lzma and zstd iostreams (#33998) 2022-11-19 12:07:52 +01:00
Olivier Cessenat
62b1d52a1e graphviz: remove 1. cyclic dep when +pangocairo and 2. error with poppler+glib (#32120)
* graphviz: remove cyclic dep to svg when pangocairo and poppler+glib failure

* graphviz: remove cyclic dep to svg when pangocairo and poppler+glib failure
2022-11-19 11:53:09 +01:00
Jim Edwards
790bd175e0 parallelio: update package to use mpi-serial, add extra module info (#33153) 2022-11-19 03:50:01 -07:00
Adam J. Stewart
2f057d729d py-scipy: add v1.9 (#31810) 2022-11-19 11:16:01 +01:00
Jerome Soumagne
a124185090 mercury: add version 2.2.0 (#31966)
add psm, psm2 and hwloc variants

Co-authored-by: Bernhard Kaindl <43588962+bernhardkaindl@users.noreply.github.com>
2022-11-19 11:12:52 +01:00
Michael Kuhn
c5235bbe86 sqlite: add 3.40.0 (#33975) 2022-11-18 18:42:03 -07:00
Chris Green
e715901cb2 PackageBase should not define builder legacy attributes (#33942)
* Add a regression test for 33928

* PackageBase should not set `(build|install)_time_test_callbacks`

* Fix audits by preserving the current semantic

Co-authored-by: Massimiliano Culpo <massimiliano.culpo@gmail.com>
2022-11-18 22:22:51 +01:00
Robert Blake
1db914f567 Updating faiss with new versions (#33983)
Co-authored-by: Massimiliano Culpo <massimiliano.culpo@gmail.com>
2022-11-18 21:43:41 +01:00
Robert Blake
688dae7058 Updating hiredis with new software versions (#33982) 2022-11-18 21:43:20 +01:00
Richard Berger
ddb460ec8d charliecloud: new version 0.30 (#34004) 2022-11-18 11:29:33 -08:00
snehring
703e5fe44a trnascan-se: adding missing build dep (#33978) 2022-11-18 11:22:21 -08:00
Bernhard Kaindl
c601bdf7bf gcc: Ensure matching assembler/binutils on RHEL8 (#33994)
gcc@10: Newer binutils than RHEL7/8's are required to for guaranteed operaton. Therefore, on RHEL7/8, reject ~binutils. You need to add +binutils to be sure to have binutils which are recent enough.

See this discussion with the OpenBLAS devs for reference:
https://github.com/xianyi/OpenBLAS/issues/3805#issuecomment-1319878852

Co-authored-by: Bernhard Kaindl <contact@bernhard.kaindl.dev>
2022-11-18 10:55:52 -08:00
Satish Balay
778dddc523 pflotran: add "rxn" variant (#33995) 2022-11-18 10:34:27 -08:00
Robert Underwood
acc19ad34f LibPressio support for MGARD (#33999)
Co-authored-by: Robert Underwood <runderwood@anl.gov>
2022-11-18 10:26:50 -08:00
Adam J. Stewart
f4826e1b33 py-mypy: add new versions; add new py-types packages (#34002)
* py-mypy: add new versions
* Add new packages
2022-11-18 10:23:55 -08:00
snehring
05ff7e657c py-cutadapt: adding version 4.1 (#33959)
* py-dnaio: adding version 0.9.1
py-cutadapt: adding version 4.1

* py-cutadapt: remove old python versions

* py-dnaio: remove old python versions

* py-cutadapt: add cython dep
2022-11-18 10:33:57 -07:00
Massimiliano Culpo
839a14c0ba Improve error message for requirements (#33988)
refers #33985
2022-11-18 15:49:46 +01:00
Bernhard Kaindl
9aafbec121 openblas: Fix build on ARM Neoverse with gcc@:9 (no sve2+bf16) (#33968)
Also improve the InstallError message when +fortran but no FC was added.

Co-authored-by: Bernhard Kaindl <contact@bernhard.kaindl.dev>
2022-11-18 02:54:04 -07:00
iarspider
20071e0c04 Update libjpeg-turbo using new multibuildsystem approach (#33971)
Co-authored-by: Bernhard Kaindl <43588962+bernhardkaindl@users.noreply.github.com>
2022-11-18 01:41:53 -07:00
Adam J. Stewart
51bb2f23a3 py-pytorch-lightning: add v1.8.2 (#33984) 2022-11-17 23:13:55 -07:00
Ross Miller
2060d51bd0 libxml2: make older versions depend on python@:3.9 (#33952)
Add a dependency on python versions less than 3.10 in order to work
around a bug in libxml2's configure script that fails to parse python
version strings with more than one character for the minor version.

The bug is present in v2.10.1, but has been fixed in 2.10.2.

Co-authored-by: Harmen Stoppels <harmenstoppels@gmail.com>
Co-authored-by: Bernhard Kaindl <43588962+bernhardkaindl@users.noreply.github.com>
2022-11-18 05:16:11 +01:00
Harmen Stoppels
e5af0ccc09 libuv-julia: usa static libs for julia (#33980) 2022-11-18 03:09:07 +01:00
Jen Herting
284859e742 [lerc] added version 4.0.0 (#33974)
* [lerc] added version 4.0.0

* [@spackbot] updating style on behalf of qwertos

Co-authored-by: qwertos <qwertos@users.noreply.github.com>
2022-11-17 19:50:58 -06:00
Cory Quammen
37e77f7a15 ParaView: add ParaView-5.11.0 new release (#33972) 2022-11-17 18:06:08 -07:00
Harmen Stoppels
d2432e1ba4 julia: 1.8.3 (#33976) 2022-11-17 16:18:32 -07:00
David
5809ba0e3f ompss-2: new package (#33844) 2022-11-17 15:03:32 -08:00
Robert Underwood
95e294b2e8 fixes for ndzip and sperr (#33882)
* fixes for ndzip
* fix commits in spack
* new and fixed sperr release

Co-authored-by: Robert Underwood <runderwood@anl.gov>
2022-11-17 14:25:48 -08:00
Glenn Johnson
cdaac58488 Spack Bioconductor package updates (#33852)
* add version 1.46.0 to bioconductor package r-a4
* add version 1.46.0 to bioconductor package r-a4base
* add version 1.46.0 to bioconductor package r-a4classif
* add version 1.46.0 to bioconductor package r-a4core
* add version 1.46.0 to bioconductor package r-a4preproc
* add version 1.46.0 to bioconductor package r-a4reporting
* add version 1.52.0 to bioconductor package r-absseq
* add version 1.28.0 to bioconductor package r-acde
* add version 1.76.0 to bioconductor package r-acgh
* add version 2.54.0 to bioconductor package r-acme
* add version 1.68.0 to bioconductor package r-adsplit
* add version 1.70.0 to bioconductor package r-affxparser
* add version 1.76.0 to bioconductor package r-affy
* add version 1.74.0 to bioconductor package r-affycomp
* add version 1.58.0 to bioconductor package r-affycompatible
* add version 1.56.0 to bioconductor package r-affycontam
* add version 1.70.0 to bioconductor package r-affycoretools
* add version 1.46.0 to bioconductor package r-affydata
* add version 1.50.0 to bioconductor package r-affyilm
* add version 1.68.0 to bioconductor package r-affyio
* add version 1.74.0 to bioconductor package r-affyplm
* add version 1.44.0 to bioconductor package r-affyrnadegradation
* add version 1.46.0 to bioconductor package r-agdex
* add version 3.30.0 to bioconductor package r-agilp
* add version 2.48.0 to bioconductor package r-agimicrorna
* add version 1.30.0 to bioconductor package r-aims
* add version 1.30.0 to bioconductor package r-aldex2
* add version 1.36.0 to bioconductor package r-allelicimbalance
* add version 1.24.0 to bioconductor package r-alpine
* add version 2.60.0 to bioconductor package r-altcdfenvs
* add version 2.22.0 to bioconductor package r-anaquin
* add version 1.26.0 to bioconductor package r-aneufinder
* add version 1.26.0 to bioconductor package r-aneufinderdata
* add version 1.70.0 to bioconductor package r-annaffy
* add version 1.76.0 to bioconductor package r-annotate
* add version 1.60.0 to bioconductor package r-annotationdbi
* add version 1.22.0 to bioconductor package r-annotationfilter
* add version 1.40.0 to bioconductor package r-annotationforge
* add version 3.6.0 to bioconductor package r-annotationhub
* add version 3.28.0 to bioconductor package r-aroma-light
* add version 1.30.0 to bioconductor package r-bamsignals
* add version 2.14.0 to bioconductor package r-beachmat
* add version 2.58.0 to bioconductor package r-biobase
* add version 2.6.0 to bioconductor package r-biocfilecache
* add version 0.44.0 to bioconductor package r-biocgenerics
* add version 1.8.0 to bioconductor package r-biocio
* add version 1.16.0 to bioconductor package r-biocneighbors
* add version 1.32.1 to bioconductor package r-biocparallel
* add version 1.14.0 to bioconductor package r-biocsingular
* add version 2.26.0 to bioconductor package r-biocstyle
* add version 3.16.0 to bioconductor package r-biocversion
* add version 2.54.0 to bioconductor package r-biomart
* add version 1.26.0 to bioconductor package r-biomformat
* add version 2.66.0 to bioconductor package r-biostrings
* add version 1.46.0 to bioconductor package r-biovizbase
* add version 1.8.0 to bioconductor package r-bluster
* add version 1.66.1 to bioconductor package r-bsgenome
* add version 1.34.0 to bioconductor package r-bsseq
* add version 1.40.0 to bioconductor package r-bumphunter
* add version 2.64.0 to bioconductor package r-category
* add version 2.28.0 to bioconductor package r-champ
* add version 2.30.0 to bioconductor package r-champdata
* add version 1.48.0 to bioconductor package r-chipseq
* add version 4.6.0 to bioconductor package r-clusterprofiler
* add version 1.34.0 to bioconductor package r-cner
* add version 1.30.0 to bioconductor package r-codex
* add version 2.14.0 to bioconductor package r-complexheatmap
* add version 1.72.0 to bioconductor package r-ctc
* add version 2.26.0 to bioconductor package r-decipher
* add version 0.24.0 to bioconductor package r-delayedarray
* add version 1.20.0 to bioconductor package r-delayedmatrixstats
* add version 1.38.0 to bioconductor package r-deseq2
* add version 1.44.0 to bioconductor package r-dexseq
* add version 1.40.0 to bioconductor package r-dirichletmultinomial
* add version 2.12.0 to bioconductor package r-dmrcate
* add version 1.72.0 to bioconductor package r-dnacopy
* add version 3.24.1 to bioconductor package r-dose
* add version 2.46.0 to bioconductor package r-dss
* add version 3.40.0 to bioconductor package r-edger
* add version 1.18.0 to bioconductor package r-enrichplot
* add version 2.22.0 to bioconductor package r-ensembldb
* add version 1.44.0 to bioconductor package r-exomecopy
* add version 2.6.0 to bioconductor package r-experimenthub
* add version 1.24.0 to bioconductor package r-fgsea
* add version 2.70.0 to bioconductor package r-gcrma
* add version 1.34.0 to bioconductor package r-gdsfmt
* add version 1.80.0 to bioconductor package r-genefilter
* add version 1.34.0 to bioconductor package r-genelendatabase
* add version 1.70.0 to bioconductor package r-genemeta
* add version 1.76.0 to bioconductor package r-geneplotter
* add version 1.20.0 to bioconductor package r-genie3
* add version 1.34.3 to bioconductor package r-genomeinfodb
* update r-genomeinfodbdata
* add version 1.34.0 to bioconductor package r-genomicalignments
* add version 1.50.2 to bioconductor package r-genomicfeatures
* add version 1.50.1 to bioconductor package r-genomicranges
* add version 2.66.0 to bioconductor package r-geoquery
* add version 1.46.0 to bioconductor package r-ggbio
* add version 3.6.2 to bioconductor package r-ggtree
* add version 2.8.0 to bioconductor package r-glimma
* add version 1.10.0 to bioconductor package r-glmgampoi
* add version 5.52.0 to bioconductor package r-globaltest
* update r-go-db
* add version 1.18.0 to bioconductor package r-gofuncr
* add version 2.24.0 to bioconductor package r-gosemsim
* add version 1.50.0 to bioconductor package r-goseq
* add version 2.64.0 to bioconductor package r-gostats
* add version 1.76.0 to bioconductor package r-graph
* add version 1.60.0 to bioconductor package r-gseabase
* add version 1.30.0 to bioconductor package r-gtrellis
* add version 1.42.0 to bioconductor package r-gviz
* add version 1.26.0 to bioconductor package r-hdf5array
* add version 1.70.0 to bioconductor package r-hypergraph
* add version 1.34.0 to bioconductor package r-illumina450probevariants-db
* add version 0.40.0 to bioconductor package r-illuminaio
* add version 1.72.0 to bioconductor package r-impute
* add version 1.36.0 to bioconductor package r-interactivedisplaybase
* add version 2.32.0 to bioconductor package r-iranges
* add version 1.58.0 to bioconductor package r-kegggraph
* add version 1.38.0 to bioconductor package r-keggrest
* add version 3.54.0 to bioconductor package r-limma
* add version 2.50.0 to bioconductor package r-lumi
* add version 1.74.0 to bioconductor package r-makecdfenv
* add version 1.76.0 to bioconductor package r-marray
* add version 1.10.0 to bioconductor package r-matrixgenerics
* add version 1.6.0 to bioconductor package r-metapod
* add version 2.44.0 to bioconductor package r-methylumi
* add version 1.44.0 to bioconductor package r-minfi
* add version 1.32.0 to bioconductor package r-missmethyl
* add version 1.78.0 to bioconductor package r-mlinterfaces
* add version 1.10.0 to bioconductor package r-mscoreutils
* add version 2.24.0 to bioconductor package r-msnbase
* add version 2.54.0 to bioconductor package r-multtest
* add version 1.36.0 to bioconductor package r-mzid
* add version 2.32.0 to bioconductor package r-mzr
* add version 1.60.0 to bioconductor package r-oligoclasses
* update r-org-hs-eg-db
* add version 1.40.0 to bioconductor package r-organismdbi
* add version 1.38.0 to bioconductor package r-pathview
* add version 1.90.0 to bioconductor package r-pcamethods
* update r-pfam-db
* add version 1.42.0 to bioconductor package r-phyloseq
* add version 1.60.0 to bioconductor package r-preprocesscore
* add version 1.30.0 to bioconductor package r-protgenerics
* add version 1.32.0 to bioconductor package r-quantro
* add version 2.30.0 to bioconductor package r-qvalue
* add version 1.74.0 to bioconductor package r-rbgl
* add version 2.38.0 to bioconductor package r-reportingtools
* add version 2.42.0 to bioconductor package r-rgraphviz
* add version 2.42.0 to bioconductor package r-rhdf5
* add version 1.10.0 to bioconductor package r-rhdf5filters
* add version 1.20.0 to bioconductor package r-rhdf5lib
* add version 2.0.0 to bioconductor package r-rhtslib
* add version 1.74.0 to bioconductor package r-roc
* add version 1.26.0 to bioconductor package r-rots
* add version 2.14.0 to bioconductor package r-rsamtools
* add version 1.58.0 to bioconductor package r-rtracklayer
* add version 0.36.0 to bioconductor package r-s4vectors
* add version 1.6.0 to bioconductor package r-scaledmatrix
* add version 1.26.0 to bioconductor package r-scater
* add version 1.12.0 to bioconductor package r-scdblfinder
* add version 1.26.0 to bioconductor package r-scran
* add version 1.8.0 to bioconductor package r-scuttle
* add version 1.64.0 to bioconductor package r-seqlogo
* add version 1.56.0 to bioconductor package r-shortread
* add version 1.72.0 to bioconductor package r-siggenes
* add version 1.20.0 to bioconductor package r-singlecellexperiment
* add version 1.32.0 to bioconductor package r-snprelate
* add version 1.48.0 to bioconductor package r-snpstats
* add version 2.34.0 to bioconductor package r-somaticsignatures
* add version 1.10.0 to bioconductor package r-sparsematrixstats
* add version 1.38.0 to bioconductor package r-spem
* add version 1.36.0 to bioconductor package r-sseq
* add version 1.28.0 to bioconductor package r-summarizedexperiment
* add version 3.46.0 to bioconductor package r-sva
* add version 1.36.0 to bioconductor package r-tfbstools
* add version 1.20.0 to bioconductor package r-tmixclust
* add version 2.50.0 to bioconductor package r-topgo
* add version 1.22.0 to bioconductor package r-treeio
* add version 1.26.0 to bioconductor package r-tximport
* add version 1.26.0 to bioconductor package r-tximportdata
* add version 1.44.0 to bioconductor package r-variantannotation
* add version 3.66.0 to bioconductor package r-vsn
* add version 2.4.0 to bioconductor package r-watermelon
* add version 2.44.0 to bioconductor package r-xde
* add version 1.56.0 to bioconductor package r-xmapbridge
* add version 0.38.0 to bioconductor package r-xvector
* add version 1.24.0 to bioconductor package r-yapsa
* add version 1.24.0 to bioconductor package r-yarn
* add version 1.44.0 to bioconductor package r-zlibbioc
* make version resource consistent for r-bsgenome-hsapiens-ucsc-hg19
* make version resource consistent for r-go-db
* make version resource consistent for r-kegg-db
* make version resource consistent for r-org-hs-eg-db
* make version resource consistent for r-pfam-db
* new package: r-ggrastr
* Patches not needed for new version
* new package: r-hdo-db
* new package: r-ggnewscale
* new package: r-gson
* Actually depends on ggplot2@3.4.0:
* Fix formatting of r-hdo-db
* Fix dependency version specifiers
* Clean up duplicate dependency references
2022-11-17 14:04:45 -08:00
Erik Heeren
13389f7eb8 glib: fix URLs (#33919) 2022-11-17 13:58:07 -07:00
Adam J. Stewart
4964633614 py-tensorflow: add patch releases, remove v0.X (#33963) 2022-11-17 14:29:48 -06:00
Jared Popelar
381bedf369 Hdf5 package: build on Windows (#31141)
* Enable hdf5 build (including +mpi) on Windows
* This includes updates to hdf5 dependencies openssl (minor edit) and
  bzip2 (more-extensive edits)
* Add binary-based installation of msmpi (this is currently the only
  supported MPI implementation in Spack for Windows). Note that this
  does not install to the Spack-specified prefix. This implementation
  will be replaced with a source-based implementation

Co-authored-by: John Parent <john.parent@kitware.com>
2022-11-17 10:40:53 -08:00
John W. Parent
6811651a0f Update CMake version to 3.25.0 (#33957)
CMake had official release 3.25.0, update package version to reflect

Co-authored-by: Harmen Stoppels <harmenstoppels@gmail.com>
Co-authored-by: Bernhard Kaindl <43588962+bernhardkaindl@users.noreply.github.com>
2022-11-17 10:58:38 -07:00
Chris Green
22aada0e20 Waf build system: fix typo in legacy_attributes (#33958)
Fix erroneous duplication of `build_time_test_callbacks` in
`legacy_attributes`: one of the duplicates should be
`install_time_test_callbacks`
2022-11-17 16:54:46 +01:00
Massimiliano Culpo
4a71020cd2 Python: do not set PYTHONHOME during build (#33956)
Setting PYTHONHOME is rarely needed (since each interpreter has
various ways of setting it automatically) and very often it is
difficult to get right manually.

For instance, the change done to set PYTHONHOME to
sysconfig["base_prefix"] broke bootstrapping dev dependencies
of Spack for me, when working inside a virtual environment in Linux.
2022-11-17 15:41:50 +01:00
Adam J. Stewart
294e6f80a0 py-rasterio: add v1.3.4 (#33961) 2022-11-17 15:23:26 +01:00
Harmen Stoppels
cc2d0eade6 docs: fix typo in multiple build systems (#33965) 2022-11-17 15:20:10 +01:00
Harmen Stoppels
f00e411287 relocate.py: small refactor for file_is_relocatable (#33967) 2022-11-17 13:21:27 +01:00
Massimiliano Culpo
da0a6280ac Remove deprecated subcommands from "spack bootstrap" (#33964)
These commands are slated for removal in v0.20
2022-11-17 12:42:57 +01:00
Ashwin Kumar
6ee6844473 Octopus : Separate serial and MPI dependencies (#33836)
* replace mpi as a variant instead of dependency 
* separate serial and MPI dependencies
* configure args depending on serial or mpi variant
* reformat with black
2022-11-17 04:34:03 -07:00
Adam J. Stewart
69822b0d82 py-torchmetrics: add v0.10.3 (#33962) 2022-11-17 11:18:57 +01:00
Michael Kuhn
93eecae0c3 Add sgid notice when running on AFS (#30247) 2022-11-17 09:17:41 +01:00
Massimiliano Culpo
61f5d85525 Python: fix bug detection, trying to access self (#33955)
Typo introduced in #33847
2022-11-17 08:38:49 +01:00
Ben Boeckel
a90e86de75 zlib, openssl: return to http URLs (#33324)
In #3113, `https` was removed to ensure that `curl` can be bootstrapped
without SSL being present. This was lost in #25672 which aimed to use
`https` where possible.

Co-authored-by: Bernhard Kaindl <43588962+bernhardkaindl@users.noreply.github.com>
2022-11-16 22:25:55 -07:00
Stephen Sachs
7247a493ab [xz] icc does not support attribute __symver__ (#33839)
xz have added attribute __symver__ for compilers that identify as GCC>=10.0 via
__GNUC__. Intels `icc` sets __GNUC__ but currently does not support this
attribute:
https://community.intel.com/t5/Intel-C-Compiler/symver-not-supported/m-p/1429028/emcs_t/S2h8ZW1haWx8dG9waWNfc3Vic2NyaXB0aW9ufExBQVRWMjIyUFFZTlZTfDE0MjkwMjh8U1VCU0NSSVBUSU9OU3xoSw#M40459
2022-11-16 20:06:41 -07:00
Sergey Kosukhin
cd8ec60ae9 serialbox: update patch to handle UTF-8 conversion errors (#33317) 2022-11-16 20:06:28 -07:00
Manuela Kuhn
fe597dfb0c py-jupyter-server: add 1.21.0 (#33310) 2022-11-16 20:02:20 -07:00
Brian Vanderwende
c721aab006 lib/spack/spack/store.py: Fix #28170 for padding relocation (#33122) 2022-11-17 03:56:00 +01:00
Manuela Kuhn
6a08e9ed08 py-jupyterlab: add 3.4.8 (#33308) 2022-11-16 19:53:59 -07:00
Christian Kniep
7637efb363 blast-plus: update to 2.13.0 and add cpio as build dependency (#33187) 2022-11-17 03:42:25 +01:00
Sebastian Grabowski
b31f1b0353 * ninja: Set min. required version of re2c dependency, fixes #33127 (#33128)
Reviewed-by: haampie, bernhardkaindl
2022-11-17 03:28:06 +01:00
Jonathon Anderson
497682260f gettext: On ppc64le, for older versions, use system cdefs.h (#33411)
Co-authored-by: Bernhard Kaindl <43588962+bernhardkaindl@users.noreply.github.com>
2022-11-17 02:55:02 +01:00
Massimiliano Culpo
e47beceb8a Clean unit-test workflow file (#33945)
Delete statements related to Python 2.7, and avoid installing
patchelf since now we can bootstrap it.
2022-11-16 23:28:49 +01:00
chenwany
067976f4b8 updated v2.11.8 (#33944) 2022-11-16 13:04:15 -08:00
Greg Becker
1263b5c444 initial implementation of slingshot detection (#33793) 2022-11-16 13:01:37 -08:00
psakievich
90f0a8eacc Upstreams: add canonicalize path (#33946) 2022-11-16 14:37:32 -06:00
John W. Parent
61a7420c94 Windows bootstrapping: remove unneeded call to add dll to PATH (#33622)
#32942 fixed bootstrapping on Windows by having the core Spack
code explicitly add the Clingo package bin/ directory as a
DLL path.

Since then, #33400 has been merged, which ensures that the Python
module installed by the Spack `clingo` package can find the DLLs
in bin/.

Note that this only works for Spack instances which have been
bootstrapped after #33400: for installations bootstrapped before
then, you will need to run `spack clean -b` (this would only
be needed for Spack instances running on Windows).
2022-11-16 12:04:57 -08:00
Stephen Sachs
39a1f1462b SIP build system: fix "python not defined in builder" (#33906)
Co-authored-by: Stephen Sachs <stesachs@amazon.com>
2022-11-16 13:36:25 -06:00
Wouter Deconinck
6de5d8e68c qt: new version 5.15.6 and 5.15.7 (#33933) 2022-11-16 11:35:01 -07:00
Robert Underwood
b0f2523350 add sz3 and mdz smoke test for inclusion in e4s (#33864)
* add sz3 and mdz smoke test

Co-authored-by: Robert Underwood <runderwood@anl.gov>
2022-11-16 10:05:43 -08:00
snehring
bc8cc39871 py-isal: use external libisal (#33932)
* py-isal: adding some missing build deps

* py-isal: use external libisal
2022-11-16 10:58:15 -07:00
Pat Riehecky
b36a8f4f2e New Package: rarpd (#28686) 2022-11-16 08:29:58 -07:00
Harmen Stoppels
0a952f8b7b docs updates for spack env depfile (#33937) 2022-11-16 15:47:31 +01:00
Matthias Wolf
26a0384171 neovim: fix build dependencies (#33935)
Buildin neovim@0.8.0 complains (for me) about Lua's lpeg and mpack
packages not being available at build time. Removing the link-only
setting in the dependencies for these two packages fixes the build for
me.
2022-11-16 07:30:08 -07:00
Harmen Stoppels
d18cccf7c5 spack env depfile in Gitlab CI should use install-deps/pkg-version-hash target (#33936) 2022-11-16 14:02:56 +00:00
Kevin Broch
fbe6b4b486 Change code suggestions to output black formatter compliant code (#33931) 2022-11-16 12:08:20 +01:00
Nathalie Furmento
5fe08a5647 starpu: add v1.3.10 (#33934) 2022-11-16 12:04:31 +01:00
Vanessasaurus
ac2fc4f271 Automated deployment to update package flux-core 2022-11-09 (#33780)
Co-authored-by: github-actions <github-actions@users.noreply.github.com>
2022-11-16 11:58:51 +01:00
Adam J. Stewart
93430496e2 Getting Started: Python 2 is no longer supported (#33927) 2022-11-16 08:36:49 +01:00
Michael Kuhn
901b31a7aa docs: fix typo (#33926) 2022-11-15 16:06:12 -08:00
Garrett Morrison
0cec2d3110 zfp: update for version 1.0.0 (#33452)
* zfp: updates and many fixes for version 1.0.0

Co-authored-by: Bernhard Kaindl <43588962+bernhardkaindl@users.noreply.github.com>
2022-11-15 16:21:57 -07:00
Satish Balay
40e4884e8b xsdk: add version @0.8.0 (#33794)
- enable sundials+magma+ginkgo
- enable dealii+sundials
- disable dealii~cgal due to build errors
- enable petsc+rocm
- enable slepc+cuda+rocm
- enable strumpack+cuda+slate
- enable slate build with non-gcc compilers
- enable pumi+shared
- enable mfem+shared
- enable ginkgo+mpi
- add hiop
- and exago
  - use exago~ipopt due to mumps~mpi conflict with mpi.h)
  - add raja variant [used by exago/hiop]
    ~raja builds exago in pflow-only mode - i.e exago~hiop~ipopt~python~cuda ^hiop~cuda [Default on MacOS]

Co-authored-by: Cody Balos <balos1@llnl.gov>
2022-11-15 16:52:58 -06:00
Jean-Luc Fattebert
f18425a51f Update BML versions list in package.py (#33920)
* Update BML versions list in package.py
* Update package.py
2022-11-15 14:08:10 -08:00
Massimiliano Culpo
472893c5c4 Run Python 3.6 unit tests on ubuntu-20.04 (#33918) 2022-11-15 22:33:11 +01:00
SXS Bot
289bbf74f6 spectre: add v2022.11.15 (#33921)
Co-authored-by: sxs-bot <sxs-bot@users.noreply.github.com>
2022-11-15 13:05:02 -08:00
Harmen Stoppels
a0182c069f Show time per phase (#33874) 2022-11-15 21:10:07 +01:00
Erik Schnetter
4ecb6ecaff meson: add new version 0.64.0 (#33880) 2022-11-15 12:42:11 -07:00
Saqib Khan
d5193f73d8 New Package: Prime95/Mprime (#33895)
* New Package: Prime95/Mprime
* Fix trailing whitespaces in prime95
* Fix checksum for prime95

Signed-off-by: saqibkh <saqibkhan@utexas.edu>
2022-11-15 11:39:02 -08:00
Brent Huisman
1aab5bb9f2 Add v0.8 to Arbor (#33916) 2022-11-15 12:57:29 -06:00
Erik Schnetter
8dda4ff60b nsimd: Update Python requirements (#33879)
We need Python 3.0:3.9
2022-11-15 10:05:14 -08:00
iarspider
0811f81a09 thepeg: make rivet dependency optional... (#33912)
* thepeg: make rivet dependency optional...
* add "libs" variant, move compiler flags to flag_handler

Co-authored-by: iarspider <iarspider@users.noreply.github.com>
2022-11-15 09:36:15 -08:00
Harmen Stoppels
af74680405 depfile: improve tab completion (#33773)
This PR allows you to do:

```
spack env create -d .
spack -e . add python
spack -e . concretize
spack -e . env depfile -o Makefile

make in<tab>              # -> install
make install-<tab>        # -> install-deps/
make install-deps/py<tab> # -> install-deps/python-x.y.z-hash
make install/zl<tab>      # -> install/zlib-x.y.z-hash

make SP<tab>              # -> make SPACK
make SPACK_<tab>          # -> make SPACK_INSTALL_FLAGS=
```
2022-11-15 18:03:17 +01:00
Harmen Stoppels
d1715c5fdf Fixup: start the timer before the phase (#33917) 2022-11-15 16:52:43 +01:00
Harmen Stoppels
b245f1ece1 Fix incorrect timer (#33900)
Revamp the timer so we always have a designated begin and end.

Fix a bug where the phase timer was stopped before the phase started,
resulting in incorrect timing reports in timers.json.
2022-11-15 16:33:47 +01:00
Harmen Stoppels
e10c47c53d glib: add missing libelf dep (#33894) 2022-11-15 07:18:10 -07:00
Harmen Stoppels
0697d20fd4 openssh: add libxcrypt (#33892) 2022-11-15 06:58:12 -07:00
Brian Van Essen
fd4f905ce5 External find now searches all dynamic linker paths (#33800)
Add spack.ld_so_conf.host_dynamic_linker_search_paths

Retrieve the current host runtime search paths for shared libraries;
for GNU and musl Linux we try to retrieve the dynamic linker from the
current Python interpreter and then find the corresponding config file
(e.g. ld.so.conf or ld-musl-<arch>.path). Similar can be done for
BSD and others, but this is not implemented yet. The default paths
are always returned. We don't check if the listed directories exist.

Use this in spack external find for libraries.

Co-authored-by: Harmen Stoppels <harmenstoppels@gmail.com>
2022-11-15 14:48:15 +01:00
Harmen Stoppels
d36c7b20d2 python: missing libxcrypt dep (#33847)
Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>
2022-11-15 14:36:16 +01:00
Harmen Stoppels
2948248d7a Remove exit(0) (#33896)
Since they cause --backtrace to report backtraces even with exit code 0
2022-11-15 14:35:44 +01:00
Jonathon Anderson
850c54c3b1 Revert "fix perl libxcrypt.so dep (#33846)" (#33909)
This reverts commit bf1b2a828c, as libxcrypt's configure script requires Perl, leading to a circular dependency.
2022-11-15 14:04:31 +01:00
Harmen Stoppels
90fb16033e gitlab: report load in generate job (#33888) 2022-11-15 13:21:21 +01:00
Matthieu Dorier
13a68d547d mochi-margo: add v0.11 (#33910) 2022-11-15 13:19:18 +01:00
Massimiliano Culpo
857ae5a74b fixup 2022-11-15 12:42:48 +01:00
Massimiliano Culpo
b3124bff7c Stop using six in Spack (#33905)
Since we dropped support for Python 2.7, there's no need
so use `six` anymore. We still need to vendor it until
we update our vendored dependencies.
2022-11-15 10:07:54 +01:00
Scott Wittenburg
5c4137baf1 gitlab: Add shared PR mirror to places pipelines look for binaries. (#33746)
While binaries built for PRs that get merged must still be rebuilt
in develop pipelines, they can be used by other PRs that find they
would otherwise need to rebuild them.  Now that spackbot is
managing copying PR binaries from merged PRs into a shared location,
keeping it pruned to a reasonable size, and making sure the indices
are up to date, spack can use these mirrors as a potential source
of binaries.
2022-11-14 19:37:23 -07:00
Stephen Sachs
a9dcd4c01e [py-pmw-patched] needs setuptools to build (#33902)
Error message:
```
ModuleNotFoundError: No module named 'setuptools'
```

Co-authored-by: Stephen Sachs <stesachs@amazon.com>
2022-11-14 18:11:23 -06:00
Harmen Stoppels
2cd7322b11 swig: needs zlib (#33890) 2022-11-14 13:22:12 -07:00
Terry Cojean
f9e9ecd0c1 Ginkgo 1.5.0 version, new MPI variant, related fixes (#33838)
* Ginkgo 1.5.0 release, new MPI variant

* Fix ROCTHRUST/ROCPRIM issues

* Fix deal.II issue with Ginkgo 1.5.0

* Also fix hipRAND+rocRAND RPATH settings

* Turn off CCACHE for spack builds.

Co-authored-by: Veselin Dobrev <dobrev@llnl.gov>

Co-authored-by: Veselin Dobrev <dobrev@llnl.gov>
2022-11-14 12:33:11 -06:00
Veselin Dobrev
d756034161 Alquimia: tweak for building xsdk v0.8.0 with ROCm/HIP (#33881) 2022-11-14 12:15:50 -06:00
psakievich
2460c4fc28 Add $date option to the list of config variables (#33875)
I'm finding I often want the date in my paths and it would be nice if spack had a config variable for this.

Co-authored-by: Tamara Dahlgren <35777542+tldahlgren@users.noreply.github.com>
2022-11-14 10:13:30 -08:00
Cory Bloor
6e39efbb9a rocm: add all GFX9, GFX10 and GFX11 amdgpu_targets (#33871)
This change adds all documented AMDGPU processors from GFX9 through GFX11 and sorts the list.
2022-11-14 10:11:22 -08:00
Satish Balay
277e35c3b0 superlu-dist: add version 8.1.2 (#33868) 2022-11-14 10:09:55 -08:00
Harmen Stoppels
bf1b2a828c fix perl libxcrypt.so dep (#33846)
Detected using https://github.com/spack/spack/pull/28109
2022-11-14 18:56:43 +01:00
Dom Heinzeller
2913f8b42b hdf4: fix build on Apple M1 (#33740) 2022-11-14 17:49:34 +01:00
Harmen Stoppels
57f4c922e9 util-linux: fix deps (#33893) 2022-11-14 17:26:21 +01:00
Todd Gamblin
8d82fecce9 Update CHANGELOG.md for v0.19.0
Co-authored-by: Harmen Stoppels <harmenstoppels@gmail.com>
2022-11-14 08:22:29 -06:00
Todd Gamblin
96126cbf17 Update SECURITY.md for v0.19 2022-11-14 08:22:29 -06:00
Todd Gamblin
6ecb57e91f Bump version to v0.20.0.dev0 2022-11-14 08:22:29 -06:00
Harmen Stoppels
a75af62fe3 Get rid of context for exceptions outside PackageBase (#33887) 2022-11-14 14:11:22 +01:00
Massimiliano Culpo
e4e02dbeae Fix a bug/typo in a config_values.py fixture (#33886) 2022-11-14 05:26:14 -07:00
Massimiliano Culpo
3efa4ee26f Remove support for running with Python 2.7 (#33063)
* Remove CI jobs related to Python 2.7

* Remove Python 2.7 specific code from Spack core

* Remove externals for Python 2 only

* Remove llnl.util.compat
2022-11-14 13:11:28 +01:00
Harmen Stoppels
f4c3d98064 libxcrypt: 4.4.31 (#33885) 2022-11-14 04:30:04 -07:00
Harmen Stoppels
a4cec82841 Speed up traverse unit tests (#33840) 2022-11-14 09:34:14 +01:00
Veselin Dobrev
3812edd0db [plasma] add support for building with 'cray-libsci' (#33869) 2022-11-13 21:47:24 -06:00
Harmen Stoppels
3ea9c8529a tau: checksum (#33873) 2022-11-13 13:06:08 -07:00
Adam J. Stewart
ed28797f83 GDAL: add v3.6.0 (#33856)
* GDAL: add v3.6.0

* Explicitly control BASISU

* More reasonable variant defaults
2022-11-13 13:56:11 -06:00
Adam J. Stewart
eadb6ae774 py-pytorch-lightning: add v1.8.1 (#33854) 2022-11-13 11:45:23 -08:00
Veselin Dobrev
a5d35c3077 [sundials] fix cmake argument generation for '+magma' (#33858)
[dealii] force cmake to accept Scalapack settings from Spack
2022-11-13 09:50:57 -06:00
Todd Gamblin
3d811617e6 hotfix: ensure that schema is compatible with tutorial VM config
We added a hotfix to releases/v0.19 with a feature flag, but the flag
is incompatible with the config schema on `develop`.

- [x] Ensure schema is compatible on develop even though config option is unused.
2022-11-13 09:14:00 -06:00
Massimiliano Culpo
03224e52d2 Speed-up bootstrap and architecture unit tests (#33865)
* Speed-up bootstrap mirror unit test

The unit test doesn't need to concretize, since it checks
only metadata for the mirror.

* architecture.py: use "default_mock_concretization" for slow test
2022-11-13 13:09:22 +01:00
Greg Becker
4ebe57cd64 update tutorial command to newest release branch (#33867) 2022-11-12 13:29:38 -08:00
Greg Becker
343cd04a54 use spack.version_info as source of version truth for spack tutorial command (#33860)
* Use spack.spack_version_info as source of truth

Co-authored-by: Todd Gamblin <gamblin2@llnl.gov>
2022-11-12 11:42:59 -08:00
Morten Kristensen
ed45385b7b py-vermin: add latest version 1.5.1 (#33861) 2022-11-12 10:31:23 -06:00
Cameron Rutherford
8a3b596042 Update ExaGO for 1.5.0 release. (#33853)
* Update ExaGO for 1.5.0 release
2022-11-11 21:58:56 -06:00
Satish Balay
1792327874 magma: add version 2.7.0 (#33814)
* magma: add version 2.7.0

Co-authored-by: Stan Tomov <tomov@icl.utk.edu>
2022-11-11 21:58:02 -06:00
Veselin Dobrev
d0dedda9a9 [mfem] add a patch to fix some issues with building with ROCm (#33810) 2022-11-11 14:42:42 -08:00
Harmen Stoppels
368dde437a libxcrypt: 4.4.30 (#33845)
* libxcrypt: 4.4.30

* libxcrypt.so.2 by default

* add libs prop, since libxcrypt provides libcrypt
2022-11-11 15:22:17 -06:00
Massimiliano Culpo
022a2d2eaf Speed-up unit tests by caching default mock concretization (#33755) 2022-11-11 21:32:40 +01:00
kwryankrattiger
5f8511311c ParaView: Add variant for VisItBridge (#33783)
* ParaView: Add variant for VisItBridge

* ParaView: Add kwryankrattiger has package maintainer
2022-11-11 13:09:43 -07:00
Greg Becker
2d2c591633 ensure view projections for extensions always point to extendee (#33848) 2022-11-11 10:59:23 -07:00
Satish Balay
d49c992b23 xsdk: update maintainers (#33822) 2022-11-11 08:30:28 -06:00
Satish Balay
f1392bbd49 trilinos: add version 13.4.1 (#33533)
And update dependency on superlu-dist (now works with @8)
2022-11-11 09:28:47 -05:00
Harmen Stoppels
c14dc2f56a docs: updates related to extensions (#33837) 2022-11-11 13:24:17 +01:00
1179 changed files with 9139 additions and 15623 deletions

View File

@@ -214,7 +214,7 @@ jobs:
- name: Bootstrap clingo
run: |
set -ex
for ver in '2.7' '3.6' '3.7' '3.8' '3.9' '3.10' ; do
for ver in '3.6' '3.7' '3.8' '3.9' '3.10' ; do
not_found=1
ver_dir="$(find $RUNNER_TOOL_CACHE/Python -wholename "*/${ver}.*/*/bin" | grep . || true)"
echo "Testing $ver_dir"

View File

@@ -20,12 +20,6 @@ jobs:
uses: ./.github/workflows/valid-style.yml
with:
with_coverage: ${{ needs.changes.outputs.core }}
audit-ancient-python:
uses: ./.github/workflows/audit.yaml
needs: [ changes ]
with:
with_coverage: ${{ needs.changes.outputs.core }}
python_version: 2.7
all-prechecks:
needs: [ prechecks ]
runs-on: ubuntu-latest
@@ -85,7 +79,7 @@ jobs:
needs: [ prechecks ]
uses: ./.github/workflows/windows_python.yml
all:
needs: [ windows, unit-tests, bootstrap, audit-ancient-python ]
needs: [ windows, unit-tests, bootstrap ]
runs-on: ubuntu-latest
steps:
- name: Success

View File

@@ -11,31 +11,38 @@ concurrency:
jobs:
# Run unit tests with different configurations on linux
ubuntu:
runs-on: ubuntu-latest
runs-on: ${{ matrix.os }}
strategy:
matrix:
python-version: ['2.7', '3.6', '3.7', '3.8', '3.9', '3.10', '3.11']
os: [ubuntu-latest]
python-version: ['3.7', '3.8', '3.9', '3.10', '3.11']
concretizer: ['clingo']
on_develop:
- ${{ github.ref == 'refs/heads/develop' }}
include:
- python-version: 2.7
- python-version: '3.11'
os: ubuntu-latest
concretizer: original
on_develop: ${{ github.ref == 'refs/heads/develop' }}
- python-version: '3.11'
concretizer: original
- python-version: '3.6'
os: ubuntu-20.04
concretizer: clingo
on_develop: ${{ github.ref == 'refs/heads/develop' }}
exclude:
- python-version: '3.7'
os: ubuntu-latest
concretizer: 'clingo'
on_develop: false
- python-version: '3.8'
os: ubuntu-latest
concretizer: 'clingo'
on_develop: false
- python-version: '3.9'
os: ubuntu-latest
concretizer: 'clingo'
on_develop: false
- python-version: '3.10'
os: ubuntu-latest
concretizer: 'clingo'
on_develop: false
@@ -52,24 +59,11 @@ jobs:
# Needed for unit tests
sudo apt-get -y install \
coreutils cvs gfortran graphviz gnupg2 mercurial ninja-build \
patchelf cmake bison libbison-dev kcov
cmake bison libbison-dev kcov
- name: Install Python packages
run: |
pip install --upgrade pip six setuptools pytest codecov[toml] pytest-xdist
# Install pytest-cov only on recent Python, to avoid stalling on Python 2.7 due
# to bugs on an unmaintained version of the package when used with xdist.
if [[ ${{ matrix.python-version }} != "2.7" ]]; then
pip install --upgrade pytest-cov
fi
# ensure style checks are not skipped in unit tests for python >= 3.6
# note that true/false (i.e., 1/0) are opposite in conditions in python and bash
if python -c 'import sys; sys.exit(not sys.version_info >= (3, 6))'; then
pip install --upgrade flake8 "isort>=4.3.5" "mypy>=0.900" "click==8.0.4" "black<=21.12b0"
fi
- name: Pin pathlib for Python 2.7
if: ${{ matrix.python-version == 2.7 }}
run: |
pip install -U pathlib2==2.3.6 toml
pip install --upgrade pip six setuptools pytest codecov[toml] pytest-xdist pytest-cov
pip install --upgrade flake8 "isort>=4.3.5" "mypy>=0.900" "click" "black"
- name: Setup git configuration
run: |
# Need this for the git tests to succeed.
@@ -82,6 +76,7 @@ jobs:
run: |
. share/spack/setup-env.sh
spack bootstrap disable spack-install
spack bootstrap now
spack -v solve zlib
- name: Run unit tests
env:
@@ -89,7 +84,7 @@ jobs:
SPACK_TEST_SOLVER: ${{ matrix.concretizer }}
SPACK_TEST_PARALLEL: 2
COVERAGE: true
UNIT_TEST_COVERAGE: ${{ (matrix.python-version == '3.11') }}
UNIT_TEST_COVERAGE: ${{ matrix.python-version == '3.11' }}
run: |
share/spack/qa/run-unit-tests
- uses: codecov/codecov-action@d9f34f8cd5cb3b3eb79b3e4b5dae3a16df499a70
@@ -165,10 +160,7 @@ jobs:
- name: Install System packages
run: |
sudo apt-get -y update
# Needed for unit tests
sudo apt-get -y install \
coreutils cvs gfortran graphviz gnupg2 mercurial ninja-build \
patchelf kcov
sudo apt-get -y install coreutils cvs gfortran graphviz gnupg2 mercurial ninja-build kcov
- name: Install Python packages
run: |
pip install --upgrade pip six setuptools pytest codecov coverage[toml] pytest-cov clingo pytest-xdist

View File

@@ -28,9 +28,9 @@ jobs:
pip install --upgrade pip
pip install --upgrade vermin
- name: vermin (Spack's Core)
run: vermin --backport argparse --violations --backport typing -t=2.7- -t=3.6- -vvv lib/spack/spack/ lib/spack/llnl/ bin/
run: vermin --backport importlib --backport argparse --violations --backport typing -t=3.6- -vvv lib/spack/spack/ lib/spack/llnl/ bin/
- name: vermin (Repositories)
run: vermin --backport argparse --violations --backport typing -t=2.7- -t=3.6- -vvv var/spack/repos
run: vermin --backport importlib --backport argparse --violations --backport typing -t=3.6- -vvv var/spack/repos
# Run style checks on the files that have been changed
style:
runs-on: ubuntu-latest
@@ -44,7 +44,7 @@ jobs:
cache: 'pip'
- name: Install Python packages
run: |
python3 -m pip install --upgrade pip six setuptools types-six click==8.0.2 'black==21.12b0' mypy isort clingo flake8
python3 -m pip install --upgrade pip six setuptools types-six black mypy isort clingo flake8
- name: Setup git configuration
run: |
# Need this for the git tests to succeed.

View File

@@ -1,16 +1,284 @@
# v0.19.0 (2022-11-11)
`v0.19.0` is a major feature release.
## Major features in this release
1. **Package requirements**
Spack's traditional [package preferences](
https://spack.readthedocs.io/en/latest/build_settings.html#package-preferences)
are soft, but we've added hard requriements to `packages.yaml` and `spack.yaml`
(#32528, #32369). Package requirements use the same syntax as specs:
```yaml
packages:
libfabric:
require: "@1.13.2"
mpich:
require:
- one_of: ["+cuda", "+rocm"]
```
More details in [the docs](
https://spack.readthedocs.io/en/latest/build_settings.html#package-requirements).
2. **Environment UI Improvements**
* Fewer surprising modifications to `spack.yaml` (#33711):
* `spack install` in an environment will no longer add to the `specs:` list; you'll
need to either use `spack add <spec>` or `spack install --add <spec>`.
* Similarly, `spack uninstall` will not remove from your environment's `specs:`
list; you'll need to use `spack remove` or `spack uninstall --remove`.
This will make it easier to manage an environment, as there is clear separation
between the stack to be installed (`spack.yaml`/`spack.lock`) and which parts of
it should be installed (`spack install` / `spack uninstall`).
* `concretizer:unify:true` is now the default mode for new environments (#31787)
We see more users creating `unify:true` environments now. Users who need
`unify:false` can add it to their environment to get the old behavior. This will
concretize every spec in the environment independently.
* Include environment configuration from URLs (#29026, [docs](
https://spack.readthedocs.io/en/latest/environments.html#included-configurations))
You can now include configuration in your environment directly from a URL:
```yaml
spack:
include:
- https://github.com/path/to/raw/config/compilers.yaml
```
4. **Multiple Build Systems**
An increasing number of packages in the ecosystem need the ability to support
multiple build systems (#30738, [docs](
https://spack.readthedocs.io/en/latest/packaging_guide.html#multiple-build-systems)),
either across versions, across platforms, or within the same version of the software.
This has been hard to support through multiple inheritance, as methods from different
build system superclasses would conflict. `package.py` files can now define separate
builder classes with installation logic for different build systems, e.g.:
```python
class ArpackNg(CMakePackage, AutotoolsPackage):
build_system(
conditional("cmake", when="@0.64:"),
conditional("autotools", when="@:0.63"),
default="cmake",
)
class CMakeBuilder(spack.build_systems.cmake.CMakeBuilder):
def cmake_args(self):
pass
class Autotoolsbuilder(spack.build_systems.autotools.AutotoolsBuilder):
def configure_args(self):
pass
```
5. **Compiler and variant propagation**
Currently, compiler flags and variants are inconsistent: compiler flags set for a
package are inherited by its dependencies, while variants are not. We should have
these be consistent by allowing for inheritance to be enabled or disabled for both
variants and compiler flags.
Example syntax:
- `package ++variant`:
enabled variant that will be propagated to dependencies
- `package +variant`:
enabled variant that will NOT be propagated to dependencies
- `package ~~variant`:
disabled variant that will be propagated to dependencies
- `package ~variant`:
disabled variant that will NOT be propagated to dependencies
- `package cflags==-g`:
`cflags` will be propagated to dependencies
- `package cflags=-g`:
`cflags` will NOT be propagated to dependencies
Syntax for non-boolan variants is similar to compiler flags. More in the docs for
[variants](
https://spack.readthedocs.io/en/latest/basic_usage.html#variants) and [compiler flags](
https://spack.readthedocs.io/en/latest/basic_usage.html#compiler-flags).
6. **Enhancements to git version specifiers**
* `v0.18.0` added the ability to use git commits as versions. You can now use the
`git.` prefix to specify git tags or branches as versions. All of these are valid git
versions in `v0.19` (#31200):
```console
foo@abcdef1234abcdef1234abcdef1234abcdef1234 # raw commit
foo@git.abcdef1234abcdef1234abcdef1234abcdef1234 # commit with git prefix
foo@git.develop # the develop branch
foo@git.0.19 # use the 0.19 tag
```
* `v0.19` also gives you more control over how Spack interprets git versions, in case
Spack cannot detect the version from the git repository. You can suffix a git
version with `=<version>` to force Spack to concretize it as a particular version
(#30998, #31914, #32257):
```console
# use mybranch, but treat it as version 3.2 for version comparison
foo@git.mybranch=3.2
# use the given commit, but treat it as develop for version comparison
foo@git.abcdef1234abcdef1234abcdef1234abcdef1234=develop
```
More in [the docs](
https://spack.readthedocs.io/en/latest/basic_usage.html#version-specifier)
7. **Changes to Cray EX Support**
Cray machines have historically had their own "platform" within Spack, because we
needed to go through the module system to leverage compilers and MPI installations on
these machines. The Cray EX programming environment now provides standalone `craycc`
executables and proper `mpicc` wrappers, so Spack can treat EX machines like Linux
with extra packages (#29392).
We expect this to greatly reduce bugs, as external packages and compilers can now be
used by prefix instead of through modules. We will also no longer be subject to
reproducibility issues when modules change from Cray PE release to release and from
site to site. This also simplifies dealing with the underlying Linux OS on cray
systems, as Spack will properly model the machine's OS as either SuSE or RHEL.
8. **Improvements to tests and testing in CI**
* `spack ci generate --tests` will generate a `.gitlab-ci.yml` file that not only does
builds but also runs tests for built packages (#27877). Public GitHub pipelines now
also run tests in CI.
* `spack test run --explicit` will only run tests for packages that are explicitly
installed, instead of all packages.
9. **Experimental binding link model**
You can add a new option to `config.yaml` to make Spack embed absolute paths to
needed shared libraries in ELF executables and shared libraries on Linux (#31948, [docs](
https://spack.readthedocs.io/en/latest/config_yaml.html#shared-linking-bind)):
```yaml
config:
shared_linking:
type: rpath
bind: true
```
This can improve launch time at scale for parallel applications, and it can make
installations less susceptible to environment variables like `LD_LIBRARY_PATH`, even
especially when dealing with external libraries that use `RUNPATH`. You can think of
this as a faster, even higher-precedence version of `RPATH`.
## Other new features of note
* `spack spec` prints dependencies more legibly. Dependencies in the output now appear
at the *earliest* level of indentation possible (#33406)
* You can override `package.py` attributes like `url`, directly in `packages.yaml`
(#33275, [docs](
https://spack.readthedocs.io/en/latest/build_settings.html#assigning-package-attributes))
* There are a number of new architecture-related format strings you can use in Spack
configuration files to specify paths (#29810, [docs](
https://spack.readthedocs.io/en/latest/configuration.html#config-file-variables))
* Spack now supports bootstrapping Clingo on Windows (#33400)
* There is now support for an `RPATH`-like library model on Windows (#31930)
## Performance Improvements
* Major performance improvements for installation from binary caches (#27610, #33628,
#33636, #33608, #33590, #33496)
* Test suite can now be parallelized using `xdist` (used in GitHub Actions) (#32361)
* Reduce lock contention for parallel builds in environments (#31643)
## New binary caches and stacks
* We now build nearly all of E4S with `oneapi` in our buildcache (#31781, #31804,
#31804, #31803, #31840, #31991, #32117, #32107, #32239)
* Added 3 new machine learning-centric stacks to binary cache: `x86_64_v3`, CUDA, ROCm
(#31592, #33463)
## Removals and Deprecations
* Support for Python 3.5 is dropped (#31908). Only Python 2.7 and 3.6+ are officially
supported.
* This is the last Spack release that will support Python 2 (#32615). Spack `v0.19`
will emit a deprecation warning if you run it with Python 2, and Python 2 support will
soon be removed from the `develop` branch.
* `LD_LIBRARY_PATH` is no longer set by default by `spack load` or module loads.
Setting `LD_LIBRARY_PATH` in Spack environments/modules can cause binaries from
outside of Spack to crash, and Spack's own builds use `RPATH` and do not need
`LD_LIBRARY_PATH` set in order to run. If you still want the old behavior, you
can run these commands to configure Spack to set `LD_LIBRARY_PATH`:
```console
spack config add modules:prefix_inspections:lib64:[LD_LIBRARY_PATH]
spack config add modules:prefix_inspections:lib:[LD_LIBRARY_PATH]
```
* The `spack:concretization:[together|separately]` has been removed after being
deprecated in `v0.18`. Use `concretizer:unify:[true|false]`.
* `config:module_roots` is no longer supported after being deprecated in `v0.18`. Use
configuration in module sets instead (#28659, [docs](
https://spack.readthedocs.io/en/latest/module_file_support.html)).
* `spack activate` and `spack deactivate` are no longer supported, having been
deprecated in `v0.18`. Use an environment with a view instead of
activating/deactivating ([docs](
https://spack.readthedocs.io/en/latest/environments.html#configuration-in-spack-yaml)).
* The old YAML format for buildcaches is now deprecated (#33707). If you are using an
old buildcache with YAML metadata you will need to regenerate it with JSON metadata.
* `spack bootstrap trust` and `spack bootstrap untrust` are deprecated in favor of
`spack bootstrap enable` and `spack bootstrap disable` and will be removed in `v0.20`.
(#33600)
* The `graviton2` architecture has been renamed to `neoverse_n1`, and `graviton3`
is now `neoverse_v1`. Buildcaches using the old architecture names will need to be rebuilt.
* The terms `blacklist` and `whitelist` have been replaced with `include` and `exclude`
in all configuration files (#31569). You can use `spack config update` to
automatically fix your configuration files.
## Notable Bugfixes
* Permission setting on installation now handles effective uid properly (#19980)
* `buildable:true` for an MPI implementation now overrides `buildable:false` for `mpi` (#18269)
* Improved error messages when attempting to use an unconfigured compiler (#32084)
* Do not punish explicitly requested compiler mismatches in the solver (#30074)
* `spack stage`: add missing --fresh and --reuse (#31626)
* Fixes for adding build system executables like `cmake` to package scope (#31739)
* Bugfix for binary relocation with aliased strings produced by newer `binutils` (#32253)
## Spack community stats
* 6,751 total packages, 335 new since `v0.18.0`
* 141 new Python packages
* 89 new R packages
* 303 people contributed to this release
* 287 committers to packages
* 57 committers to core
# v0.18.1 (2022-07-19)
### Spack Bugfixes
* Fix several bugs related to bootstrapping (#30834,#31042,#31180)
* Fix a regression that was causing spec hashes to differ between
* Fix a regression that was causing spec hashes to differ between
Python 2 and Python 3 (#31092)
* Fixed compiler flags for oneAPI and DPC++ (#30856)
* Fixed several issues related to concretization (#31142,#31153,#31170,#31226)
* Improved support for Cray manifest file and `spack external find` (#31144,#31201,#31173,#31186)
* Assign a version to openSUSE Tumbleweed according to the GLIBC version
in the system (#19895)
in the system (#19895)
* Improved Dockerfile generation for `spack containerize` (#29741,#31321)
* Fixed a few bugs related to concurrent execution of commands (#31509,#31493,#31477)
* Fixed a few bugs related to concurrent execution of commands (#31509,#31493,#31477)
### Package updates
* WarpX: add v22.06, fixed libs property (#30866,#31102)

View File

@@ -10,8 +10,8 @@ For more on Spack's release structure, see
| Version | Supported |
| ------- | ------------------ |
| develop | :white_check_mark: |
| 0.17.x | :white_check_mark: |
| 0.16.x | :white_check_mark: |
| 0.19.x | :white_check_mark: |
| 0.18.x | :white_check_mark: |
## Reporting a Vulnerability

View File

@@ -31,13 +31,11 @@ import os
import os.path
import sys
min_python3 = (3, 5)
min_python3 = (3, 6)
if sys.version_info[:2] < (2, 7) or (
sys.version_info[:2] >= (3, 0) and sys.version_info[:2] < min_python3
):
if sys.version_info[:2] < min_python3:
v_info = sys.version_info[:3]
msg = "Spack requires Python 2.7 or %d.%d or higher " % min_python3
msg = "Spack requires Python %d.%d or higher " % min_python3
msg += "You are running spack with Python %d.%d.%d." % v_info
sys.exit(msg)

View File

@@ -19,7 +19,7 @@ config:
install_tree:
root: $spack/opt/spack
projections:
all: "${ARCHITECTURE}/${COMPILERNAME}-${COMPILERVER}/${PACKAGE}-${VERSION}-${HASH}"
all: "{architecture}/{compiler.name}-{compiler.version}/{name}-{version}-{hash}"
# install_tree can include an optional padded length (int or boolean)
# default is False (do not pad)
# if padded_length is True, Spack will pad as close to the system max path
@@ -214,4 +214,8 @@ config:
# Number of seconds a buildcache's index.json is cached locally before probing
# for updates, within a single Spack invocation. Defaults to 10 minutes.
binary_index_ttl: 600
binary_index_ttl: 600
flags:
# Whether to keep -Werror flags active in package builds.
keep_werror: 'none'

View File

@@ -1244,8 +1244,8 @@ For example, for the ``stackstart`` variant:
.. code-block:: sh
mpileaks stackstart=4 # variant will be propagated to dependencies
mpileaks stackstart==4 # only mpileaks will have this variant value
mpileaks stackstart==4 # variant will be propagated to dependencies
mpileaks stackstart=4 # only mpileaks will have this variant value
^^^^^^^^^^^^^^
Compiler Flags
@@ -1672,9 +1672,13 @@ own install prefix. However, certain packages are typically installed
`Python <https://www.python.org>`_ packages are typically installed in the
``$prefix/lib/python-2.7/site-packages`` directory.
Spack has support for this type of installation as well. In Spack,
a package that can live inside the prefix of another package is called
an *extension*. Suppose you have Python installed like so:
In Spack, installation prefixes are immutable, so this type of installation
is not directly supported. However, it is possible to create views that
allow you to merge install prefixes of multiple packages into a single new prefix.
Views are a convenient way to get a more traditional filesystem structure.
Using *extensions*, you can ensure that Python packages always share the
same prefix in the view as Python itself. Suppose you have
Python installed like so:
.. code-block:: console
@@ -1712,8 +1716,6 @@ You can find extensions for your Python installation like this:
py-ipython@2.3.1 py-pygments@2.0.1 py-setuptools@11.3.1
py-matplotlib@1.4.2 py-pyparsing@2.0.3 py-six@1.9.0
==> None activated.
The extensions are a subset of what's returned by ``spack list``, and
they are packages like any other. They are installed into their own
prefixes, and you can see this with ``spack find --paths``:
@@ -1741,32 +1743,72 @@ directly when you run ``python``:
ImportError: No module named numpy
>>>
^^^^^^^^^^^^^^^^
Using Extensions
^^^^^^^^^^^^^^^^
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
Using Extensions in Environments
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
There are multiple ways to get ``numpy`` working in Python. The first is
to use :ref:`shell-support`. You can simply ``load`` the extension,
and it will be added to the ``PYTHONPATH`` in your current shell, and
Python itself will be available in the ``PATH``:
The recommended way of working with extensions such as ``py-numpy``
above is through :ref:`Environments <environments>`. For example,
the following creates an environment in the current working directory
with a filesystem view in the ``./view`` directory:
.. code-block:: console
$ spack env create --with-view view --dir .
$ spack -e . add py-numpy
$ spack -e . concretize
$ spack -e . install
We recommend environments for two reasons. Firstly, environments
can be activated (requires :ref:`shell-support`):
.. code-block:: console
$ spack env activate .
which sets all the right environment variables such as ``PATH`` and
``PYTHONPATH``. This ensures that
.. code-block:: console
$ python
>>> import numpy
works. Secondly, even without shell support, the view ensures
that Python can locate its extensions:
.. code-block:: console
$ ./view/bin/python
>>> import numpy
See :ref:`environments` for a more in-depth description of Spack
environments and customizations to views.
^^^^^^^^^^^^^^^^^^^^
Using ``spack load``
^^^^^^^^^^^^^^^^^^^^
A more traditional way of using Spack and extensions is ``spack load``
(requires :ref:`shell-support`). This will add the extension to ``PYTHONPATH``
in your current shell, and Python itself will be available in the ``PATH``:
.. code-block:: console
$ spack load py-numpy
$ python
>>> import numpy
Now ``import numpy`` will succeed for as long as you keep your current
session open.
The loaded packages can be checked using ``spack find --loaded``
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
Loading Extensions via Modules
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
Instead of using Spack's environment modification capabilities through
the ``spack load`` command, you can load numpy through your
environment modules (using ``environment-modules`` or ``lmod``). This
will also add the extension to the ``PYTHONPATH`` in your current
shell.
Apart from ``spack env activate`` and ``spack load``, you can load numpy
through your environment modules (using ``environment-modules`` or
``lmod``). This will also add the extension to the ``PYTHONPATH`` in
your current shell.
.. code-block:: console
@@ -1776,15 +1818,6 @@ If you do not know the name of the specific numpy module you wish to
load, you can use the ``spack module tcl|lmod loads`` command to get
the name of the module from the Spack spec.
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
Extensions in an Environment
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
Another way to use extensions is to create a view, which merges the
python installation along with the extensions into a single prefix.
See :ref:`environments` for a more in-depth description
of environment views.
-----------------------
Filesystem requirements
-----------------------

View File

@@ -5,9 +5,9 @@
.. _cachedcmakepackage:
------------------
CachedCMakePackage
------------------
-----------
CachedCMake
-----------
The CachedCMakePackage base class is used for CMake-based workflows
that create a CMake cache file prior to running ``cmake``. This is

View File

@@ -5,9 +5,9 @@
.. _cudapackage:
-----------
CudaPackage
-----------
----
Cuda
----
Different from other packages, ``CudaPackage`` does not represent a build system.
Instead its goal is to simplify and unify usage of ``CUDA`` in other packages by providing a `mixin-class <https://en.wikipedia.org/wiki/Mixin>`_.
@@ -80,7 +80,7 @@ standard CUDA compiler flags.
**cuda_flags**
This built-in static method returns a list of command line flags
This built-in static method returns a list of command line flags
for the chosen ``cuda_arch`` value(s). The flags are intended to
be passed to the CUDA compiler driver (i.e., ``nvcc``).

View File

@@ -6,9 +6,9 @@
.. _inteloneapipackage:
====================
IntelOneapiPackage
====================
===========
IntelOneapi
===========
.. contents::
@@ -36,7 +36,7 @@ For more information on a specific package, do::
Intel no longer releases new versions of Parallel Studio, which can be
used in Spack via the :ref:`intelpackage`. All of its components can
now be found in oneAPI.
now be found in oneAPI.
Examples
========

View File

@@ -5,9 +5,9 @@
.. _intelpackage:
------------
IntelPackage
------------
-----
Intel
-----
.. contents::

View File

@@ -5,9 +5,9 @@
.. _pythonpackage:
-------------
PythonPackage
-------------
------
Python
------
Python packages and modules have their own special build system. This
documentation covers everything you'll need to know in order to write
@@ -724,10 +724,9 @@ extends vs. depends_on
This is very similar to the naming dilemma above, with a slight twist.
As mentioned in the :ref:`Packaging Guide <packaging_extensions>`,
``extends`` and ``depends_on`` are very similar, but ``extends`` adds
the ability to *activate* the package. Activation involves symlinking
everything in the installation prefix of the package to the installation
prefix of Python. This allows the user to import a Python module without
``extends`` and ``depends_on`` are very similar, but ``extends`` ensures
that the extension and extendee share the same prefix in views.
This allows the user to import a Python module without
having to add that module to ``PYTHONPATH``.
When deciding between ``extends`` and ``depends_on``, the best rule of
@@ -735,7 +734,7 @@ thumb is to check the installation prefix. If Python libraries are
installed to ``<prefix>/lib/pythonX.Y/site-packages``, then you
should use ``extends``. If Python libraries are installed elsewhere
or the only files that get installed reside in ``<prefix>/bin``, then
don't use ``extends``, as symlinking the package wouldn't be useful.
don't use ``extends``.
^^^^^^^^^^^^^^^^^^^^^
Alternatives to Spack

View File

@@ -5,9 +5,9 @@
.. _rocmpackage:
-----------
ROCmPackage
-----------
----
ROCm
----
The ``ROCmPackage`` is not a build system but a helper package. Like ``CudaPackage``,
it provides standard variants, dependencies, and conflicts to facilitate building
@@ -25,7 +25,7 @@ This package provides the following variants:
* **rocm**
This variant is used to enable/disable building with ``rocm``.
This variant is used to enable/disable building with ``rocm``.
The default is disabled (or ``False``).
* **amdgpu_target**

View File

@@ -5,9 +5,9 @@
.. _rpackage:
--------
RPackage
--------
--
R
--
Like Python, R has its own built-in build system.
@@ -193,10 +193,10 @@ Build system dependencies
As an extension of the R ecosystem, your package will obviously depend
on R to build and run. Normally, we would use ``depends_on`` to express
this, but for R packages, we use ``extends``. ``extends`` is similar to
``depends_on``, but adds an additional feature: the ability to "activate"
the package by symlinking it to the R installation directory. Since
every R package needs this, the ``RPackage`` base class contains:
this, but for R packages, we use ``extends``. This implies a special
dependency on R, which is used to set environment variables such as
``R_LIBS`` uniformly. Since every R package needs this, the ``RPackage``
base class contains:
.. code-block:: python

View File

@@ -5,15 +5,15 @@
.. _sourceforgepackage:
------------------
SourceforgePackage
------------------
-----------
Sourceforge
-----------
``SourceforgePackage`` is a
``SourceforgePackage`` is a
`mixin-class <https://en.wikipedia.org/wiki/Mixin>`_. It automatically
sets the URL based on a list of Sourceforge mirrors listed in
`sourceforge_mirror_path`, which defaults to a half dozen known mirrors.
Refer to the package source
Refer to the package source
(`<https://github.com/spack/spack/blob/develop/lib/spack/spack/build_systems/sourceforge.py>`__) for the current list of mirrors used by Spack.
@@ -29,7 +29,7 @@ This package provides a method for populating mirror URLs.
It is decorated with `property` so its results are treated as
a package attribute.
Refer to
Refer to
`<https://spack.readthedocs.io/en/latest/packaging_guide.html#mirrors-of-the-main-url>`__
for information on how Spack uses the `urls` attribute during
fetching.

View File

@@ -37,12 +37,6 @@
os.symlink(os.path.abspath("../../.."), link_name, target_is_directory=True)
sys.path.insert(0, os.path.abspath("_spack_root/lib/spack/external"))
sys.path.insert(0, os.path.abspath("_spack_root/lib/spack/external/pytest-fallback"))
if sys.version_info[0] < 3:
sys.path.insert(0, os.path.abspath("_spack_root/lib/spack/external/yaml/lib"))
else:
sys.path.insert(0, os.path.abspath("_spack_root/lib/spack/external/yaml/lib3"))
sys.path.append(os.path.abspath("_spack_root/lib/spack/"))
# Add the Spack bin directory to the path so that we can use its output in docs.
@@ -160,8 +154,8 @@ def setup(sphinx):
master_doc = "index"
# General information about the project.
project = u"Spack"
copyright = u"2013-2021, Lawrence Livermore National Laboratory."
project = "Spack"
copyright = "2013-2021, Lawrence Livermore National Laboratory."
# The version info for the project you're documenting, acts as replacement for
# |version| and |release|, also used in various other places throughout the
@@ -350,7 +344,7 @@ class SpackStyle(DefaultStyle):
# Grouping the document tree into LaTeX files. List of tuples
# (source start file, target name, title, author, documentclass [howto/manual]).
latex_documents = [
("index", "Spack.tex", u"Spack Documentation", u"Todd Gamblin", "manual"),
("index", "Spack.tex", "Spack Documentation", "Todd Gamblin", "manual"),
]
# The name of an image file (relative to this directory) to place at the top of
@@ -378,7 +372,7 @@ class SpackStyle(DefaultStyle):
# One entry per manual page. List of tuples
# (source start file, name, description, authors, manual section).
man_pages = [("index", "spack", u"Spack Documentation", [u"Todd Gamblin"], 1)]
man_pages = [("index", "spack", "Spack Documentation", ["Todd Gamblin"], 1)]
# If true, show URL addresses after external links.
# man_show_urls = False
@@ -393,8 +387,8 @@ class SpackStyle(DefaultStyle):
(
"index",
"Spack",
u"Spack Documentation",
u"Todd Gamblin",
"Spack Documentation",
"Todd Gamblin",
"Spack",
"One line description of project.",
"Miscellaneous",

View File

@@ -416,6 +416,8 @@ Spack understands several special variables. These are:
ArchSpec. E.g. ``skylake`` or ``neoverse-n1``.
* ``$target_family``. The target family for the current host, as
detected by ArchSpec. E.g. ``x86_64`` or ``aarch64``.
* ``$date``: the current date in the format YYYY-MM-DD
Note that, as with shell variables, you can write these as ``$varname``
or with braces to distinguish the variable from surrounding characters:

View File

@@ -1070,19 +1070,23 @@ the include is conditional.
Building a subset of the environment
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
The generated ``Makefile``\s contain install targets for each spec. Given the hash
of a particular spec, you can use the ``.install/<hash>`` target to install the
spec with its dependencies. There is also ``.install-deps/<hash>`` to *only* install
The generated ``Makefile``\s contain install targets for each spec, identified
by ``<name>-<version>-<hash>``. This allows you to install only a subset of the
packages in the environment. When packages are unique in the environment, it's
enough to know the name and let tab-completion fill out the version and hash.
The following phony targets are available: ``install/<spec>`` to install the
spec with its dependencies, and ``install-deps/<spec>`` to *only* install
its dependencies. This can be useful when certain flags should only apply to
dependencies. Below we show a use case where a spec is installed with verbose
output (``spack install --verbose``) while its dependencies are installed silently:
.. code:: console
$ spack env depfile -o Makefile --make-target-prefix my_env
$ spack env depfile -o Makefile
# Install dependencies in parallel, only show a log on error.
$ make -j16 my_env/.install-deps/<hash> SPACK_INSTALL_FLAGS=--show-log-on-error
$ make -j16 install-deps/python-3.11.0-<hash> SPACK_INSTALL_FLAGS=--show-log-on-error
# Install the root spec with verbose output.
$ make -j16 my_env/.install/<hash> SPACK_INSTALL_FLAGS=--verbose
$ make -j16 install/python-3.11.0-<hash> SPACK_INSTALL_FLAGS=--verbose

View File

@@ -21,8 +21,9 @@ be present on the machine where Spack is run:
:header-rows: 1
These requirements can be easily installed on most modern Linux systems;
on macOS, XCode is required. Spack is designed to run on HPC
platforms like Cray. Not all packages should be expected
on macOS, the Command Line Tools package is required, and a full XCode suite
may be necessary for some packages such as Qt and apple-gl. Spack is designed
to run on HPC platforms like Cray. Not all packages should be expected
to work on all platforms.
A build matrix showing which packages are working on which systems is shown below.
@@ -1704,9 +1705,11 @@ dependencies or incompatible build tools like autoconf. Here are several
packages known to work on Windows:
* abseil-cpp
* bzip2
* clingo
* cpuinfo
* cmake
* hdf5
* glm
* nasm
* netlib-lapack (requires Intel Fortran)

View File

@@ -2634,9 +2634,12 @@ extendable package:
extends('python')
...
Now, the ``py-numpy`` package can be used as an argument to ``spack
activate``. When it is activated, all the files in its prefix will be
symbolically linked into the prefix of the python package.
This accomplishes a few things. Firstly, the Python package can set special
variables such as ``PYTHONPATH`` for all extensions when the run or build
environment is set up. Secondly, filesystem views can ensure that extensions
are put in the same prefix as their extendee. This ensures that Python in
a view can always locate its Python packages, even without environment
variables set.
A package can only extend one other package at a time. To support packages
that may extend one of a list of other packages, Spack supports multiple
@@ -2684,9 +2687,8 @@ variant(s) are selected. This may be accomplished with conditional
...
Sometimes, certain files in one package will conflict with those in
another, which means they cannot both be activated (symlinked) at the
same time. In this case, you can tell Spack to ignore those files
when it does the activation:
another, which means they cannot both be used in a view at the
same time. In this case, you can tell Spack to ignore those files:
.. code-block:: python
@@ -2698,7 +2700,7 @@ when it does the activation:
...
The code above will prevent everything in the ``$prefix/bin/`` directory
from being linked in at activation time.
from being linked in a view.
.. note::
@@ -3523,7 +3525,7 @@ will likely contain some overriding of default builder methods:
def cmake_args(self):
pass
class Autotoolsbuilder(spack.build_systems.autotools.AutotoolsBuilder):
class AutotoolsBuilder(spack.build_systems.autotools.AutotoolsBuilder):
def configure_args(self):
pass

View File

@@ -1,5 +1,5 @@
Name, Supported Versions, Notes, Requirement Reason
Python, 2.7/3.6-3.11, , Interpreter for Spack
Python, 3.6--3.11, , Interpreter for Spack
C/C++ Compilers, , , Building software
make, , , Build software
patch, , , Build software
1 Name Supported Versions Notes Requirement Reason
2 Python 2.7/3.6-3.11 3.6--3.11 Interpreter for Spack
3 C/C++ Compilers Building software
4 make Build software
5 patch Build software

41
lib/spack/env/cc vendored
View File

@@ -440,6 +440,47 @@ while [ $# -ne 0 ]; do
continue
fi
if [ -n "${SPACK_COMPILER_FLAGS_KEEP}" ] ; then
# NOTE: the eval is required to allow `|` alternatives inside the variable
eval "\
case \"\$1\" in
$SPACK_COMPILER_FLAGS_KEEP)
append other_args_list \"\$1\"
shift
continue
;;
esac
"
fi
# the replace list is a space-separated list of pipe-separated pairs,
# the first in each pair is the original prefix to be matched, the
# second is the replacement prefix
if [ -n "${SPACK_COMPILER_FLAGS_REPLACE}" ] ; then
for rep in ${SPACK_COMPILER_FLAGS_REPLACE} ; do
before=${rep%|*}
after=${rep#*|}
eval "\
stripped=\"\${1##$before}\"
"
if [ "$stripped" = "$1" ] ; then
continue
fi
replaced="$after$stripped"
# it matched, remove it
shift
if [ -z "$replaced" ] ; then
# completely removed, continue OUTER loop
continue 2
fi
# re-build argument list with replacement
set -- "$replaced" "$@"
done
fi
case "$1" in
-isystem*)
arg="${1#-isystem}"

View File

@@ -71,13 +71,12 @@
import re
import math
import multiprocessing
import io
import sys
import threading
import time
from contextlib import contextmanager
from six import StringIO
from six import string_types
_error_matches = [
"^FAIL: ",
@@ -246,7 +245,7 @@ def __getitem__(self, line_no):
def __str__(self):
"""Returns event lines and context."""
out = StringIO()
out = io.StringIO()
for i in range(self.start, self.end):
if i == self.line_no:
out.write(' >> %-6d%s' % (i, self[i]))
@@ -386,7 +385,7 @@ def parse(self, stream, context=6, jobs=None):
(tuple): two lists containing ``BuildError`` and
``BuildWarning`` objects.
"""
if isinstance(stream, string_types):
if isinstance(stream, str):
with open(stream) as f:
return self.parse(f, context, jobs)

File diff suppressed because it is too large Load Diff

View File

@@ -1,289 +0,0 @@
A. HISTORY OF THE SOFTWARE
==========================
Python was created in the early 1990s by Guido van Rossum at Stichting
Mathematisch Centrum (CWI, see http://www.cwi.nl) in the Netherlands
as a successor of a language called ABC. Guido remains Python's
principal author, although it includes many contributions from others.
In 1995, Guido continued his work on Python at the Corporation for
National Research Initiatives (CNRI, see http://www.cnri.reston.va.us)
in Reston, Virginia where he released several versions of the
software.
In May 2000, Guido and the Python core development team moved to
BeOpen.com to form the BeOpen PythonLabs team. In October of the same
year, the PythonLabs team moved to Digital Creations (now Zope
Corporation, see http://www.zope.com). In 2001, the Python Software
Foundation (PSF, see http://www.python.org/psf/) was formed, a
non-profit organization created specifically to own Python-related
Intellectual Property. Zope Corporation is a sponsoring member of
the PSF.
All Python releases are Open Source (see http://www.opensource.org for
the Open Source Definition). Historically, most, but not all, Python
releases have also been GPL-compatible; the table below summarizes
the various releases.
Release Derived Year Owner GPL-
from compatible? (1)
0.9.0 thru 1.2 1991-1995 CWI yes
1.3 thru 1.5.2 1.2 1995-1999 CNRI yes
1.6 1.5.2 2000 CNRI no
2.0 1.6 2000 BeOpen.com no
1.6.1 1.6 2001 CNRI yes (2)
2.1 2.0+1.6.1 2001 PSF no
2.0.1 2.0+1.6.1 2001 PSF yes
2.1.1 2.1+2.0.1 2001 PSF yes
2.2 2.1.1 2001 PSF yes
2.1.2 2.1.1 2002 PSF yes
2.1.3 2.1.2 2002 PSF yes
2.2.1 2.2 2002 PSF yes
2.2.2 2.2.1 2002 PSF yes
2.2.3 2.2.2 2003 PSF yes
2.3 2.2.2 2002-2003 PSF yes
2.3.1 2.3 2002-2003 PSF yes
2.3.2 2.3.1 2002-2003 PSF yes
2.3.3 2.3.2 2002-2003 PSF yes
2.3.4 2.3.3 2004 PSF yes
2.3.5 2.3.4 2005 PSF yes
2.4 2.3 2004 PSF yes
2.4.1 2.4 2005 PSF yes
2.4.2 2.4.1 2005 PSF yes
2.4.3 2.4.2 2006 PSF yes
2.4.4 2.4.3 2006 PSF yes
2.5 2.4 2006 PSF yes
2.5.1 2.5 2007 PSF yes
2.5.2 2.5.1 2008 PSF yes
2.5.3 2.5.2 2008 PSF yes
2.6 2.5 2008 PSF yes
2.6.1 2.6 2008 PSF yes
2.6.2 2.6.1 2009 PSF yes
2.6.3 2.6.2 2009 PSF yes
2.6.4 2.6.3 2009 PSF yes
2.6.5 2.6.4 2010 PSF yes
3.0 2.6 2008 PSF yes
3.0.1 3.0 2009 PSF yes
3.1 3.0.1 2009 PSF yes
3.1.1 3.1 2009 PSF yes
3.1.2 3.1.1 2010 PSF yes
3.1.3 3.1.2 2010 PSF yes
3.1.4 3.1.3 2011 PSF yes
3.2 3.1 2011 PSF yes
3.2.1 3.2 2011 PSF yes
3.2.2 3.2.1 2011 PSF yes
3.2.3 3.2.2 2012 PSF yes
Footnotes:
(1) GPL-compatible doesn't mean that we're distributing Python under
the GPL. All Python licenses, unlike the GPL, let you distribute
a modified version without making your changes open source. The
GPL-compatible licenses make it possible to combine Python with
other software that is released under the GPL; the others don't.
(2) According to Richard Stallman, 1.6.1 is not GPL-compatible,
because its license has a choice of law clause. According to
CNRI, however, Stallman's lawyer has told CNRI's lawyer that 1.6.1
is "not incompatible" with the GPL.
Thanks to the many outside volunteers who have worked under Guido's
direction to make these releases possible.
B. TERMS AND CONDITIONS FOR ACCESSING OR OTHERWISE USING PYTHON
===============================================================
PYTHON SOFTWARE FOUNDATION LICENSE VERSION 2
--------------------------------------------
1. This LICENSE AGREEMENT is between the Python Software Foundation
("PSF"), and the Individual or Organization ("Licensee") accessing and
otherwise using this software ("Python") in source or binary form and
its associated documentation.
2. Subject to the terms and conditions of this License Agreement, PSF hereby
grants Licensee a nonexclusive, royalty-free, world-wide license to reproduce,
analyze, test, perform and/or display publicly, prepare derivative works,
distribute, and otherwise use Python alone or in any derivative version,
provided, however, that PSF's License Agreement and PSF's notice of copyright,
i.e., "Copyright (c) 2001, 2002, 2003, 2004, 2005, 2006, 2007, 2008, 2009, 2010,
2011, 2012 Python Software Foundation; All Rights Reserved" are retained in Python
alone or in any derivative version prepared by Licensee.
3. In the event Licensee prepares a derivative work that is based on
or incorporates Python or any part thereof, and wants to make
the derivative work available to others as provided herein, then
Licensee hereby agrees to include in any such work a brief summary of
the changes made to Python.
4. PSF is making Python available to Licensee on an "AS IS"
basis. PSF MAKES NO REPRESENTATIONS OR WARRANTIES, EXPRESS OR
IMPLIED. BY WAY OF EXAMPLE, BUT NOT LIMITATION, PSF MAKES NO AND
DISCLAIMS ANY REPRESENTATION OR WARRANTY OF MERCHANTABILITY OR FITNESS
FOR ANY PARTICULAR PURPOSE OR THAT THE USE OF PYTHON WILL NOT
INFRINGE ANY THIRD PARTY RIGHTS.
5. PSF SHALL NOT BE LIABLE TO LICENSEE OR ANY OTHER USERS OF PYTHON
FOR ANY INCIDENTAL, SPECIAL, OR CONSEQUENTIAL DAMAGES OR LOSS AS
A RESULT OF MODIFYING, DISTRIBUTING, OR OTHERWISE USING PYTHON,
OR ANY DERIVATIVE THEREOF, EVEN IF ADVISED OF THE POSSIBILITY THEREOF.
6. This License Agreement will automatically terminate upon a material
breach of its terms and conditions.
7. Nothing in this License Agreement shall be deemed to create any
relationship of agency, partnership, or joint venture between PSF and
Licensee. This License Agreement does not grant permission to use PSF
trademarks or trade name in a trademark sense to endorse or promote
products or services of Licensee, or any third party.
8. By copying, installing or otherwise using Python, Licensee
agrees to be bound by the terms and conditions of this License
Agreement.
BEOPEN.COM LICENSE AGREEMENT FOR PYTHON 2.0
-------------------------------------------
BEOPEN PYTHON OPEN SOURCE LICENSE AGREEMENT VERSION 1
1. This LICENSE AGREEMENT is between BeOpen.com ("BeOpen"), having an
office at 160 Saratoga Avenue, Santa Clara, CA 95051, and the
Individual or Organization ("Licensee") accessing and otherwise using
this software in source or binary form and its associated
documentation ("the Software").
2. Subject to the terms and conditions of this BeOpen Python License
Agreement, BeOpen hereby grants Licensee a non-exclusive,
royalty-free, world-wide license to reproduce, analyze, test, perform
and/or display publicly, prepare derivative works, distribute, and
otherwise use the Software alone or in any derivative version,
provided, however, that the BeOpen Python License is retained in the
Software, alone or in any derivative version prepared by Licensee.
3. BeOpen is making the Software available to Licensee on an "AS IS"
basis. BEOPEN MAKES NO REPRESENTATIONS OR WARRANTIES, EXPRESS OR
IMPLIED. BY WAY OF EXAMPLE, BUT NOT LIMITATION, BEOPEN MAKES NO AND
DISCLAIMS ANY REPRESENTATION OR WARRANTY OF MERCHANTABILITY OR FITNESS
FOR ANY PARTICULAR PURPOSE OR THAT THE USE OF THE SOFTWARE WILL NOT
INFRINGE ANY THIRD PARTY RIGHTS.
4. BEOPEN SHALL NOT BE LIABLE TO LICENSEE OR ANY OTHER USERS OF THE
SOFTWARE FOR ANY INCIDENTAL, SPECIAL, OR CONSEQUENTIAL DAMAGES OR LOSS
AS A RESULT OF USING, MODIFYING OR DISTRIBUTING THE SOFTWARE, OR ANY
DERIVATIVE THEREOF, EVEN IF ADVISED OF THE POSSIBILITY THEREOF.
5. This License Agreement will automatically terminate upon a material
breach of its terms and conditions.
6. This License Agreement shall be governed by and interpreted in all
respects by the law of the State of California, excluding conflict of
law provisions. Nothing in this License Agreement shall be deemed to
create any relationship of agency, partnership, or joint venture
between BeOpen and Licensee. This License Agreement does not grant
permission to use BeOpen trademarks or trade names in a trademark
sense to endorse or promote products or services of Licensee, or any
third party. As an exception, the "BeOpen Python" logos available at
http://www.pythonlabs.com/logos.html may be used according to the
permissions granted on that web page.
7. By copying, installing or otherwise using the software, Licensee
agrees to be bound by the terms and conditions of this License
Agreement.
CNRI LICENSE AGREEMENT FOR PYTHON 1.6.1
---------------------------------------
1. This LICENSE AGREEMENT is between the Corporation for National
Research Initiatives, having an office at 1895 Preston White Drive,
Reston, VA 20191 ("CNRI"), and the Individual or Organization
("Licensee") accessing and otherwise using Python 1.6.1 software in
source or binary form and its associated documentation.
2. Subject to the terms and conditions of this License Agreement, CNRI
hereby grants Licensee a nonexclusive, royalty-free, world-wide
license to reproduce, analyze, test, perform and/or display publicly,
prepare derivative works, distribute, and otherwise use Python 1.6.1
alone or in any derivative version, provided, however, that CNRI's
License Agreement and CNRI's notice of copyright, i.e., "Copyright (c)
1995-2001 Corporation for National Research Initiatives; All Rights
Reserved" are retained in Python 1.6.1 alone or in any derivative
version prepared by Licensee. Alternately, in lieu of CNRI's License
Agreement, Licensee may substitute the following text (omitting the
quotes): "Python 1.6.1 is made available subject to the terms and
conditions in CNRI's License Agreement. This Agreement together with
Python 1.6.1 may be located on the Internet using the following
unique, persistent identifier (known as a handle): 1895.22/1013. This
Agreement may also be obtained from a proxy server on the Internet
using the following URL: http://hdl.handle.net/1895.22/1013".
3. In the event Licensee prepares a derivative work that is based on
or incorporates Python 1.6.1 or any part thereof, and wants to make
the derivative work available to others as provided herein, then
Licensee hereby agrees to include in any such work a brief summary of
the changes made to Python 1.6.1.
4. CNRI is making Python 1.6.1 available to Licensee on an "AS IS"
basis. CNRI MAKES NO REPRESENTATIONS OR WARRANTIES, EXPRESS OR
IMPLIED. BY WAY OF EXAMPLE, BUT NOT LIMITATION, CNRI MAKES NO AND
DISCLAIMS ANY REPRESENTATION OR WARRANTY OF MERCHANTABILITY OR FITNESS
FOR ANY PARTICULAR PURPOSE OR THAT THE USE OF PYTHON 1.6.1 WILL NOT
INFRINGE ANY THIRD PARTY RIGHTS.
5. CNRI SHALL NOT BE LIABLE TO LICENSEE OR ANY OTHER USERS OF PYTHON
1.6.1 FOR ANY INCIDENTAL, SPECIAL, OR CONSEQUENTIAL DAMAGES OR LOSS AS
A RESULT OF MODIFYING, DISTRIBUTING, OR OTHERWISE USING PYTHON 1.6.1,
OR ANY DERIVATIVE THEREOF, EVEN IF ADVISED OF THE POSSIBILITY THEREOF.
6. This License Agreement will automatically terminate upon a material
breach of its terms and conditions.
7. This License Agreement shall be governed by the federal
intellectual property law of the United States, including without
limitation the federal copyright law, and, to the extent such
U.S. federal law does not apply, by the law of the Commonwealth of
Virginia, excluding Virginia's conflict of law provisions.
Notwithstanding the foregoing, with regard to derivative works based
on Python 1.6.1 that incorporate non-separable material that was
previously distributed under the GNU General Public License (GPL), the
law of the Commonwealth of Virginia shall govern this License
Agreement only as to issues arising under or with respect to
Paragraphs 4, 5, and 7 of this License Agreement. Nothing in this
License Agreement shall be deemed to create any relationship of
agency, partnership, or joint venture between CNRI and Licensee. This
License Agreement does not grant permission to use CNRI trademarks or
trade name in a trademark sense to endorse or promote products or
services of Licensee, or any third party.
8. By clicking on the "ACCEPT" button where indicated, or by copying,
installing or otherwise using Python 1.6.1, Licensee agrees to be
bound by the terms and conditions of this License Agreement.
ACCEPT
CWI LICENSE AGREEMENT FOR PYTHON 0.9.0 THROUGH 1.2
--------------------------------------------------
Copyright (c) 1991 - 1995, Stichting Mathematisch Centrum Amsterdam,
The Netherlands. All rights reserved.
Permission to use, copy, modify, and distribute this software and its
documentation for any purpose and without fee is hereby granted,
provided that the above copyright notice appear in all copies and that
both that copyright notice and this permission notice appear in
supporting documentation, and that the name of Stichting Mathematisch
Centrum or CWI not be used in advertising or publicity pertaining to
distribution of the software without specific, written prior
permission.
STICHTING MATHEMATISCH CENTRUM DISCLAIMS ALL WARRANTIES WITH REGARD TO
THIS SOFTWARE, INCLUDING ALL IMPLIED WARRANTIES OF MERCHANTABILITY AND
FITNESS, IN NO EVENT SHALL STICHTING MATHEMATISCH CENTRUM BE LIABLE
FOR ANY SPECIAL, INDIRECT OR CONSEQUENTIAL DAMAGES OR ANY DAMAGES
WHATSOEVER RESULTING FROM LOSS OF USE, DATA OR PROFITS, WHETHER IN AN
ACTION OF CONTRACT, NEGLIGENCE OR OTHER TORTIOUS ACTION, ARISING OUT
OF OR IN CONNECTION WITH THE USE OR PERFORMANCE OF THIS SOFTWARE.

View File

@@ -1 +0,0 @@
from .functools32 import *

View File

@@ -1,158 +0,0 @@
"""Drop-in replacement for the thread module.
Meant to be used as a brain-dead substitute so that threaded code does
not need to be rewritten for when the thread module is not present.
Suggested usage is::
try:
try:
import _thread # Python >= 3
except:
import thread as _thread # Python < 3
except ImportError:
import _dummy_thread as _thread
"""
# Exports only things specified by thread documentation;
# skipping obsolete synonyms allocate(), start_new(), exit_thread().
__all__ = ['error', 'start_new_thread', 'exit', 'get_ident', 'allocate_lock',
'interrupt_main', 'LockType']
# A dummy value
TIMEOUT_MAX = 2**31
# NOTE: this module can be imported early in the extension building process,
# and so top level imports of other modules should be avoided. Instead, all
# imports are done when needed on a function-by-function basis. Since threads
# are disabled, the import lock should not be an issue anyway (??).
class error(Exception):
"""Dummy implementation of _thread.error."""
def __init__(self, *args):
self.args = args
def start_new_thread(function, args, kwargs={}):
"""Dummy implementation of _thread.start_new_thread().
Compatibility is maintained by making sure that ``args`` is a
tuple and ``kwargs`` is a dictionary. If an exception is raised
and it is SystemExit (which can be done by _thread.exit()) it is
caught and nothing is done; all other exceptions are printed out
by using traceback.print_exc().
If the executed function calls interrupt_main the KeyboardInterrupt will be
raised when the function returns.
"""
if type(args) != type(tuple()):
raise TypeError("2nd arg must be a tuple")
if type(kwargs) != type(dict()):
raise TypeError("3rd arg must be a dict")
global _main
_main = False
try:
function(*args, **kwargs)
except SystemExit:
pass
except:
import traceback
traceback.print_exc()
_main = True
global _interrupt
if _interrupt:
_interrupt = False
raise KeyboardInterrupt
def exit():
"""Dummy implementation of _thread.exit()."""
raise SystemExit
def get_ident():
"""Dummy implementation of _thread.get_ident().
Since this module should only be used when _threadmodule is not
available, it is safe to assume that the current process is the
only thread. Thus a constant can be safely returned.
"""
return -1
def allocate_lock():
"""Dummy implementation of _thread.allocate_lock()."""
return LockType()
def stack_size(size=None):
"""Dummy implementation of _thread.stack_size()."""
if size is not None:
raise error("setting thread stack size not supported")
return 0
class LockType(object):
"""Class implementing dummy implementation of _thread.LockType.
Compatibility is maintained by maintaining self.locked_status
which is a boolean that stores the state of the lock. Pickling of
the lock, though, should not be done since if the _thread module is
then used with an unpickled ``lock()`` from here problems could
occur from this class not having atomic methods.
"""
def __init__(self):
self.locked_status = False
def acquire(self, waitflag=None, timeout=-1):
"""Dummy implementation of acquire().
For blocking calls, self.locked_status is automatically set to
True and returned appropriately based on value of
``waitflag``. If it is non-blocking, then the value is
actually checked and not set if it is already acquired. This
is all done so that threading.Condition's assert statements
aren't triggered and throw a little fit.
"""
if waitflag is None or waitflag:
self.locked_status = True
return True
else:
if not self.locked_status:
self.locked_status = True
return True
else:
if timeout > 0:
import time
time.sleep(timeout)
return False
__enter__ = acquire
def __exit__(self, typ, val, tb):
self.release()
def release(self):
"""Release the dummy lock."""
# XXX Perhaps shouldn't actually bother to test? Could lead
# to problems for complex, threaded code.
if not self.locked_status:
raise error
self.locked_status = False
return True
def locked(self):
return self.locked_status
# Used to signal that interrupt_main was called in a "thread"
_interrupt = False
# True when not executing in a "thread"
_main = True
def interrupt_main():
"""Set _interrupt flag to True to have start_new_thread raise
KeyboardInterrupt upon exiting."""
if _main:
raise KeyboardInterrupt
else:
global _interrupt
_interrupt = True

View File

@@ -1,423 +0,0 @@
"""functools.py - Tools for working with functions and callable objects
"""
# Python module wrapper for _functools C module
# to allow utilities written in Python to be added
# to the functools module.
# Written by Nick Coghlan <ncoghlan at gmail.com>
# and Raymond Hettinger <python at rcn.com>
# Copyright (C) 2006-2010 Python Software Foundation.
# See C source code for _functools credits/copyright
__all__ = ['update_wrapper', 'wraps', 'WRAPPER_ASSIGNMENTS', 'WRAPPER_UPDATES',
'total_ordering', 'cmp_to_key', 'lru_cache', 'reduce', 'partial']
from _functools import partial, reduce
from collections import MutableMapping, namedtuple
from .reprlib32 import recursive_repr as _recursive_repr
from weakref import proxy as _proxy
import sys as _sys
try:
from thread import allocate_lock as Lock
except ImportError:
from ._dummy_thread32 import allocate_lock as Lock
################################################################################
### OrderedDict
################################################################################
class _Link(object):
__slots__ = 'prev', 'next', 'key', '__weakref__'
class OrderedDict(dict):
'Dictionary that remembers insertion order'
# An inherited dict maps keys to values.
# The inherited dict provides __getitem__, __len__, __contains__, and get.
# The remaining methods are order-aware.
# Big-O running times for all methods are the same as regular dictionaries.
# The internal self.__map dict maps keys to links in a doubly linked list.
# The circular doubly linked list starts and ends with a sentinel element.
# The sentinel element never gets deleted (this simplifies the algorithm).
# The sentinel is in self.__hardroot with a weakref proxy in self.__root.
# The prev links are weakref proxies (to prevent circular references).
# Individual links are kept alive by the hard reference in self.__map.
# Those hard references disappear when a key is deleted from an OrderedDict.
def __init__(self, *args, **kwds):
'''Initialize an ordered dictionary. The signature is the same as
regular dictionaries, but keyword arguments are not recommended because
their insertion order is arbitrary.
'''
if len(args) > 1:
raise TypeError('expected at most 1 arguments, got %d' % len(args))
try:
self.__root
except AttributeError:
self.__hardroot = _Link()
self.__root = root = _proxy(self.__hardroot)
root.prev = root.next = root
self.__map = {}
self.__update(*args, **kwds)
def __setitem__(self, key, value,
dict_setitem=dict.__setitem__, proxy=_proxy, Link=_Link):
'od.__setitem__(i, y) <==> od[i]=y'
# Setting a new item creates a new link at the end of the linked list,
# and the inherited dictionary is updated with the new key/value pair.
if key not in self:
self.__map[key] = link = Link()
root = self.__root
last = root.prev
link.prev, link.next, link.key = last, root, key
last.next = link
root.prev = proxy(link)
dict_setitem(self, key, value)
def __delitem__(self, key, dict_delitem=dict.__delitem__):
'od.__delitem__(y) <==> del od[y]'
# Deleting an existing item uses self.__map to find the link which gets
# removed by updating the links in the predecessor and successor nodes.
dict_delitem(self, key)
link = self.__map.pop(key)
link_prev = link.prev
link_next = link.next
link_prev.next = link_next
link_next.prev = link_prev
def __iter__(self):
'od.__iter__() <==> iter(od)'
# Traverse the linked list in order.
root = self.__root
curr = root.next
while curr is not root:
yield curr.key
curr = curr.next
def __reversed__(self):
'od.__reversed__() <==> reversed(od)'
# Traverse the linked list in reverse order.
root = self.__root
curr = root.prev
while curr is not root:
yield curr.key
curr = curr.prev
def clear(self):
'od.clear() -> None. Remove all items from od.'
root = self.__root
root.prev = root.next = root
self.__map.clear()
dict.clear(self)
def popitem(self, last=True):
'''od.popitem() -> (k, v), return and remove a (key, value) pair.
Pairs are returned in LIFO order if last is true or FIFO order if false.
'''
if not self:
raise KeyError('dictionary is empty')
root = self.__root
if last:
link = root.prev
link_prev = link.prev
link_prev.next = root
root.prev = link_prev
else:
link = root.next
link_next = link.next
root.next = link_next
link_next.prev = root
key = link.key
del self.__map[key]
value = dict.pop(self, key)
return key, value
def move_to_end(self, key, last=True):
'''Move an existing element to the end (or beginning if last==False).
Raises KeyError if the element does not exist.
When last=True, acts like a fast version of self[key]=self.pop(key).
'''
link = self.__map[key]
link_prev = link.prev
link_next = link.next
link_prev.next = link_next
link_next.prev = link_prev
root = self.__root
if last:
last = root.prev
link.prev = last
link.next = root
last.next = root.prev = link
else:
first = root.next
link.prev = root
link.next = first
root.next = first.prev = link
def __sizeof__(self):
sizeof = _sys.getsizeof
n = len(self) + 1 # number of links including root
size = sizeof(self.__dict__) # instance dictionary
size += sizeof(self.__map) * 2 # internal dict and inherited dict
size += sizeof(self.__hardroot) * n # link objects
size += sizeof(self.__root) * n # proxy objects
return size
update = __update = MutableMapping.update
keys = MutableMapping.keys
values = MutableMapping.values
items = MutableMapping.items
__ne__ = MutableMapping.__ne__
__marker = object()
def pop(self, key, default=__marker):
'''od.pop(k[,d]) -> v, remove specified key and return the corresponding
value. If key is not found, d is returned if given, otherwise KeyError
is raised.
'''
if key in self:
result = self[key]
del self[key]
return result
if default is self.__marker:
raise KeyError(key)
return default
def setdefault(self, key, default=None):
'od.setdefault(k[,d]) -> od.get(k,d), also set od[k]=d if k not in od'
if key in self:
return self[key]
self[key] = default
return default
@_recursive_repr()
def __repr__(self):
'od.__repr__() <==> repr(od)'
if not self:
return '%s()' % (self.__class__.__name__,)
return '%s(%r)' % (self.__class__.__name__, list(self.items()))
def __reduce__(self):
'Return state information for pickling'
items = [[k, self[k]] for k in self]
inst_dict = vars(self).copy()
for k in vars(OrderedDict()):
inst_dict.pop(k, None)
if inst_dict:
return (self.__class__, (items,), inst_dict)
return self.__class__, (items,)
def copy(self):
'od.copy() -> a shallow copy of od'
return self.__class__(self)
@classmethod
def fromkeys(cls, iterable, value=None):
'''OD.fromkeys(S[, v]) -> New ordered dictionary with keys from S.
If not specified, the value defaults to None.
'''
self = cls()
for key in iterable:
self[key] = value
return self
def __eq__(self, other):
'''od.__eq__(y) <==> od==y. Comparison to another OD is order-sensitive
while comparison to a regular mapping is order-insensitive.
'''
if isinstance(other, OrderedDict):
return len(self)==len(other) and \
all(p==q for p, q in zip(self.items(), other.items()))
return dict.__eq__(self, other)
# update_wrapper() and wraps() are tools to help write
# wrapper functions that can handle naive introspection
WRAPPER_ASSIGNMENTS = ('__module__', '__name__', '__doc__')
WRAPPER_UPDATES = ('__dict__',)
def update_wrapper(wrapper,
wrapped,
assigned = WRAPPER_ASSIGNMENTS,
updated = WRAPPER_UPDATES):
"""Update a wrapper function to look like the wrapped function
wrapper is the function to be updated
wrapped is the original function
assigned is a tuple naming the attributes assigned directly
from the wrapped function to the wrapper function (defaults to
functools.WRAPPER_ASSIGNMENTS)
updated is a tuple naming the attributes of the wrapper that
are updated with the corresponding attribute from the wrapped
function (defaults to functools.WRAPPER_UPDATES)
"""
wrapper.__wrapped__ = wrapped
for attr in assigned:
try:
value = getattr(wrapped, attr)
except AttributeError:
pass
else:
setattr(wrapper, attr, value)
for attr in updated:
getattr(wrapper, attr).update(getattr(wrapped, attr, {}))
# Return the wrapper so this can be used as a decorator via partial()
return wrapper
def wraps(wrapped,
assigned = WRAPPER_ASSIGNMENTS,
updated = WRAPPER_UPDATES):
"""Decorator factory to apply update_wrapper() to a wrapper function
Returns a decorator that invokes update_wrapper() with the decorated
function as the wrapper argument and the arguments to wraps() as the
remaining arguments. Default arguments are as for update_wrapper().
This is a convenience function to simplify applying partial() to
update_wrapper().
"""
return partial(update_wrapper, wrapped=wrapped,
assigned=assigned, updated=updated)
def total_ordering(cls):
"""Class decorator that fills in missing ordering methods"""
convert = {
'__lt__': [('__gt__', lambda self, other: not (self < other or self == other)),
('__le__', lambda self, other: self < other or self == other),
('__ge__', lambda self, other: not self < other)],
'__le__': [('__ge__', lambda self, other: not self <= other or self == other),
('__lt__', lambda self, other: self <= other and not self == other),
('__gt__', lambda self, other: not self <= other)],
'__gt__': [('__lt__', lambda self, other: not (self > other or self == other)),
('__ge__', lambda self, other: self > other or self == other),
('__le__', lambda self, other: not self > other)],
'__ge__': [('__le__', lambda self, other: (not self >= other) or self == other),
('__gt__', lambda self, other: self >= other and not self == other),
('__lt__', lambda self, other: not self >= other)]
}
roots = set(dir(cls)) & set(convert)
if not roots:
raise ValueError('must define at least one ordering operation: < > <= >=')
root = max(roots) # prefer __lt__ to __le__ to __gt__ to __ge__
for opname, opfunc in convert[root]:
if opname not in roots:
opfunc.__name__ = opname
opfunc.__doc__ = getattr(int, opname).__doc__
setattr(cls, opname, opfunc)
return cls
def cmp_to_key(mycmp):
"""Convert a cmp= function into a key= function"""
class K(object):
__slots__ = ['obj']
def __init__(self, obj):
self.obj = obj
def __lt__(self, other):
return mycmp(self.obj, other.obj) < 0
def __gt__(self, other):
return mycmp(self.obj, other.obj) > 0
def __eq__(self, other):
return mycmp(self.obj, other.obj) == 0
def __le__(self, other):
return mycmp(self.obj, other.obj) <= 0
def __ge__(self, other):
return mycmp(self.obj, other.obj) >= 0
def __ne__(self, other):
return mycmp(self.obj, other.obj) != 0
__hash__ = None
return K
_CacheInfo = namedtuple("CacheInfo", "hits misses maxsize currsize")
def lru_cache(maxsize=100):
"""Least-recently-used cache decorator.
If *maxsize* is set to None, the LRU features are disabled and the cache
can grow without bound.
Arguments to the cached function must be hashable.
View the cache statistics named tuple (hits, misses, maxsize, currsize) with
f.cache_info(). Clear the cache and statistics with f.cache_clear().
Access the underlying function with f.__wrapped__.
See: http://en.wikipedia.org/wiki/Cache_algorithms#Least_Recently_Used
"""
# Users should only access the lru_cache through its public API:
# cache_info, cache_clear, and f.__wrapped__
# The internals of the lru_cache are encapsulated for thread safety and
# to allow the implementation to change (including a possible C version).
def decorating_function(user_function,
tuple=tuple, sorted=sorted, len=len, KeyError=KeyError):
hits, misses = [0], [0]
kwd_mark = (object(),) # separates positional and keyword args
lock = Lock() # needed because OrderedDict isn't threadsafe
if maxsize is None:
cache = dict() # simple cache without ordering or size limit
@wraps(user_function)
def wrapper(*args, **kwds):
key = args
if kwds:
key += kwd_mark + tuple(sorted(kwds.items()))
try:
result = cache[key]
hits[0] += 1
return result
except KeyError:
pass
result = user_function(*args, **kwds)
cache[key] = result
misses[0] += 1
return result
else:
cache = OrderedDict() # ordered least recent to most recent
cache_popitem = cache.popitem
cache_renew = cache.move_to_end
@wraps(user_function)
def wrapper(*args, **kwds):
key = args
if kwds:
key += kwd_mark + tuple(sorted(kwds.items()))
with lock:
try:
result = cache[key]
cache_renew(key) # record recent use of this key
hits[0] += 1
return result
except KeyError:
pass
result = user_function(*args, **kwds)
with lock:
cache[key] = result # record recent use of this key
misses[0] += 1
if len(cache) > maxsize:
cache_popitem(0) # purge least recently used cache entry
return result
def cache_info():
"""Report cache statistics"""
with lock:
return _CacheInfo(hits[0], misses[0], maxsize, len(cache))
def cache_clear():
"""Clear the cache and cache statistics"""
with lock:
cache.clear()
hits[0] = misses[0] = 0
wrapper.cache_info = cache_info
wrapper.cache_clear = cache_clear
return wrapper
return decorating_function

View File

@@ -1,157 +0,0 @@
"""Redo the builtin repr() (representation) but with limits on most sizes."""
__all__ = ["Repr", "repr", "recursive_repr"]
import __builtin__ as builtins
from itertools import islice
try:
from thread import get_ident
except ImportError:
from _dummy_thread32 import get_ident
def recursive_repr(fillvalue='...'):
'Decorator to make a repr function return fillvalue for a recursive call'
def decorating_function(user_function):
repr_running = set()
def wrapper(self):
key = id(self), get_ident()
if key in repr_running:
return fillvalue
repr_running.add(key)
try:
result = user_function(self)
finally:
repr_running.discard(key)
return result
# Can't use functools.wraps() here because of bootstrap issues
wrapper.__module__ = getattr(user_function, '__module__')
wrapper.__doc__ = getattr(user_function, '__doc__')
wrapper.__name__ = getattr(user_function, '__name__')
wrapper.__annotations__ = getattr(user_function, '__annotations__', {})
return wrapper
return decorating_function
class Repr:
def __init__(self):
self.maxlevel = 6
self.maxtuple = 6
self.maxlist = 6
self.maxarray = 5
self.maxdict = 4
self.maxset = 6
self.maxfrozenset = 6
self.maxdeque = 6
self.maxstring = 30
self.maxlong = 40
self.maxother = 30
def repr(self, x):
return self.repr1(x, self.maxlevel)
def repr1(self, x, level):
typename = type(x).__name__
if ' ' in typename:
parts = typename.split()
typename = '_'.join(parts)
if hasattr(self, 'repr_' + typename):
return getattr(self, 'repr_' + typename)(x, level)
else:
return self.repr_instance(x, level)
def _repr_iterable(self, x, level, left, right, maxiter, trail=''):
n = len(x)
if level <= 0 and n:
s = '...'
else:
newlevel = level - 1
repr1 = self.repr1
pieces = [repr1(elem, newlevel) for elem in islice(x, maxiter)]
if n > maxiter: pieces.append('...')
s = ', '.join(pieces)
if n == 1 and trail: right = trail + right
return '%s%s%s' % (left, s, right)
def repr_tuple(self, x, level):
return self._repr_iterable(x, level, '(', ')', self.maxtuple, ',')
def repr_list(self, x, level):
return self._repr_iterable(x, level, '[', ']', self.maxlist)
def repr_array(self, x, level):
header = "array('%s', [" % x.typecode
return self._repr_iterable(x, level, header, '])', self.maxarray)
def repr_set(self, x, level):
x = _possibly_sorted(x)
return self._repr_iterable(x, level, 'set([', '])', self.maxset)
def repr_frozenset(self, x, level):
x = _possibly_sorted(x)
return self._repr_iterable(x, level, 'frozenset([', '])',
self.maxfrozenset)
def repr_deque(self, x, level):
return self._repr_iterable(x, level, 'deque([', '])', self.maxdeque)
def repr_dict(self, x, level):
n = len(x)
if n == 0: return '{}'
if level <= 0: return '{...}'
newlevel = level - 1
repr1 = self.repr1
pieces = []
for key in islice(_possibly_sorted(x), self.maxdict):
keyrepr = repr1(key, newlevel)
valrepr = repr1(x[key], newlevel)
pieces.append('%s: %s' % (keyrepr, valrepr))
if n > self.maxdict: pieces.append('...')
s = ', '.join(pieces)
return '{%s}' % (s,)
def repr_str(self, x, level):
s = builtins.repr(x[:self.maxstring])
if len(s) > self.maxstring:
i = max(0, (self.maxstring-3)//2)
j = max(0, self.maxstring-3-i)
s = builtins.repr(x[:i] + x[len(x)-j:])
s = s[:i] + '...' + s[len(s)-j:]
return s
def repr_int(self, x, level):
s = builtins.repr(x) # XXX Hope this isn't too slow...
if len(s) > self.maxlong:
i = max(0, (self.maxlong-3)//2)
j = max(0, self.maxlong-3-i)
s = s[:i] + '...' + s[len(s)-j:]
return s
def repr_instance(self, x, level):
try:
s = builtins.repr(x)
# Bugs in x.__repr__() can cause arbitrary
# exceptions -- then make up something
except Exception:
return '<%s instance at %x>' % (x.__class__.__name__, id(x))
if len(s) > self.maxother:
i = max(0, (self.maxother-3)//2)
j = max(0, self.maxother-3-i)
s = s[:i] + '...' + s[len(s)-j:]
return s
def _possibly_sorted(x):
# Since not all sequences of items can be sorted and comparison
# functions may raise arbitrary exceptions, return an unsorted
# sequence in that case.
try:
return sorted(x)
except Exception:
return list(x)
aRepr = Repr()
repr = aRepr.repr

View File

@@ -1,103 +0,0 @@
# Copyright 2013-2022 Lawrence Livermore National Security, LLC and other
# Spack Project Developers. See the top-level COPYRIGHT file for details.
#
# SPDX-License-Identifier: (Apache-2.0 OR MIT)
"""
This is a fake set of symbols to allow spack to import typing in python
versions where we do not support type checking (<3)
"""
from collections import defaultdict
# (1) Unparameterized types.
Annotated = object
Any = object
AnyStr = object
ByteString = object
Counter = object
Final = object
Hashable = object
NoReturn = object
Sized = object
SupportsAbs = object
SupportsBytes = object
SupportsComplex = object
SupportsFloat = object
SupportsIndex = object
SupportsInt = object
SupportsRound = object
# (2) Parameterized types.
AbstractSet = defaultdict(lambda: object)
AsyncContextManager = defaultdict(lambda: object)
AsyncGenerator = defaultdict(lambda: object)
AsyncIterable = defaultdict(lambda: object)
AsyncIterator = defaultdict(lambda: object)
Awaitable = defaultdict(lambda: object)
Callable = defaultdict(lambda: object)
ChainMap = defaultdict(lambda: object)
ClassVar = defaultdict(lambda: object)
Collection = defaultdict(lambda: object)
Container = defaultdict(lambda: object)
ContextManager = defaultdict(lambda: object)
Coroutine = defaultdict(lambda: object)
DefaultDict = defaultdict(lambda: object)
Deque = defaultdict(lambda: object)
Dict = defaultdict(lambda: object)
ForwardRef = defaultdict(lambda: object)
FrozenSet = defaultdict(lambda: object)
Generator = defaultdict(lambda: object)
Generic = defaultdict(lambda: object)
ItemsView = defaultdict(lambda: object)
Iterable = defaultdict(lambda: object)
Iterator = defaultdict(lambda: object)
KeysView = defaultdict(lambda: object)
List = defaultdict(lambda: object)
Literal = defaultdict(lambda: object)
Mapping = defaultdict(lambda: object)
MappingView = defaultdict(lambda: object)
MutableMapping = defaultdict(lambda: object)
MutableSequence = defaultdict(lambda: object)
MutableSet = defaultdict(lambda: object)
NamedTuple = defaultdict(lambda: object)
Optional = defaultdict(lambda: object)
OrderedDict = defaultdict(lambda: object)
Reversible = defaultdict(lambda: object)
Sequence = defaultdict(lambda: object)
Set = defaultdict(lambda: object)
Tuple = defaultdict(lambda: object)
Type = defaultdict(lambda: object)
TypedDict = defaultdict(lambda: object)
Union = defaultdict(lambda: object)
ValuesView = defaultdict(lambda: object)
# (3) Type variable declarations.
TypeVar = lambda *args, **kwargs: None
# (4) Functions.
cast = lambda _type, x: x
get_args = None
get_origin = None
get_type_hints = None
no_type_check = None
no_type_check_decorator = None
## typing_extensions
# We get a ModuleNotFoundError when attempting to import anything from typing_extensions
# if we separate this into a separate typing_extensions.py file for some reason.
# (1) Unparameterized types.
IntVar = object
Literal = object
NewType = object
Text = object
# (2) Parameterized types.
Protocol = defaultdict(lambda: object)
# (3) Macro for avoiding evaluation except during type checking.
TYPE_CHECKING = False
# (4) Decorators.
final = lambda x: x
overload = lambda x: x
runtime_checkable = lambda x: x

View File

@@ -7,11 +7,10 @@
import argparse
import errno
import io
import re
import sys
from six import StringIO
class Command(object):
"""Parsed representation of a command from argparse.
@@ -181,7 +180,7 @@ def __init__(self, prog, out=None, aliases=False, rst_levels=_rst_levels):
self.rst_levels = rst_levels
def format(self, cmd):
string = StringIO()
string = io.StringIO()
string.write(self.begin_command(cmd.prog))
if cmd.description:

View File

@@ -1,39 +0,0 @@
# Copyright 2013-2022 Lawrence Livermore National Security, LLC and other
# Spack Project Developers. See the top-level COPYRIGHT file for details.
#
# SPDX-License-Identifier: (Apache-2.0 OR MIT)
# isort: off
import sys
if sys.version_info < (3,):
from itertools import ifilter as filter
from itertools import imap as map
from itertools import izip as zip
from itertools import izip_longest as zip_longest # novm
from urllib import urlencode as urlencode
from urllib import urlopen as urlopen
else:
filter = filter
map = map
zip = zip
from itertools import zip_longest as zip_longest # novm # noqa: F401
from urllib.parse import urlencode as urlencode # novm # noqa: F401
from urllib.request import urlopen as urlopen # novm # noqa: F401
if sys.version_info >= (3, 3):
from collections.abc import Hashable as Hashable # novm
from collections.abc import Iterable as Iterable # novm
from collections.abc import Mapping as Mapping # novm
from collections.abc import MutableMapping as MutableMapping # novm
from collections.abc import MutableSequence as MutableSequence # novm
from collections.abc import MutableSet as MutableSet # novm
from collections.abc import Sequence as Sequence # novm
else:
from collections import Hashable as Hashable # noqa: F401
from collections import Iterable as Iterable # noqa: F401
from collections import Mapping as Mapping # noqa: F401
from collections import MutableMapping as MutableMapping # noqa: F401
from collections import MutableSequence as MutableSequence # noqa: F401
from collections import MutableSet as MutableSet # noqa: F401
from collections import Sequence as Sequence # noqa: F401

View File

@@ -3,6 +3,7 @@
#
# SPDX-License-Identifier: (Apache-2.0 OR MIT)
import collections
import collections.abc
import errno
import glob
import hashlib
@@ -17,10 +18,7 @@
from contextlib import contextmanager
from sys import platform as _platform
import six
from llnl.util import tty
from llnl.util.compat import Sequence
from llnl.util.lang import dedupe, memoized
from llnl.util.symlink import islink, symlink
@@ -290,9 +288,7 @@ def groupid_to_group(x):
shutil.copy(filename, tmp_filename)
try:
extra_kwargs = {}
if sys.version_info > (3, 0):
extra_kwargs = {"errors": "surrogateescape"}
extra_kwargs = {"errors": "surrogateescape"}
# Open as a text file and filter until the end of the file is
# reached or we found a marker in the line if it was specified
@@ -522,7 +518,7 @@ def chgrp(path, group, follow_symlinks=True):
if is_windows:
raise OSError("Function 'chgrp' is not supported on Windows")
if isinstance(group, six.string_types):
if isinstance(group, str):
gid = grp.getgrnam(group).gr_gid
else:
gid = group
@@ -1019,7 +1015,7 @@ def open_if_filename(str_or_file, mode="r"):
If it's a file object, just yields the file object.
"""
if isinstance(str_or_file, six.string_types):
if isinstance(str_or_file, str):
with open(str_or_file, mode) as f:
yield f
else:
@@ -1309,46 +1305,34 @@ def visit_directory_tree(root, visitor, rel_path="", depth=0):
depth (str): current depth from the root
"""
dir = os.path.join(root, rel_path)
if sys.version_info >= (3, 5, 0):
dir_entries = sorted(os.scandir(dir), key=lambda d: d.name) # novermin
else:
dir_entries = os.listdir(dir)
dir_entries.sort()
dir_entries = sorted(os.scandir(dir), key=lambda d: d.name)
for f in dir_entries:
if sys.version_info >= (3, 5, 0):
rel_child = os.path.join(rel_path, f.name)
islink = f.is_symlink()
# On Windows, symlinks to directories are distinct from
# symlinks to files, and it is possible to create a
# broken symlink to a directory (e.g. using os.symlink
# without `target_is_directory=True`), invoking `isdir`
# on a symlink on Windows that is broken in this manner
# will result in an error. In this case we can work around
# the issue by reading the target and resolving the
# directory ourselves
try:
isdir = f.is_dir()
except OSError as e:
if is_windows and hasattr(e, "winerror") and e.winerror == 5 and islink:
# if path is a symlink, determine destination and
# evaluate file vs directory
link_target = resolve_link_target_relative_to_the_link(f)
# link_target might be relative but
# resolve_link_target_relative_to_the_link
# will ensure that if so, that it is relative
# to the CWD and therefore
# makes sense
isdir = os.path.isdir(link_target)
else:
raise e
else:
rel_child = os.path.join(rel_path, f)
lexists, islink, isdir = lexists_islink_isdir(os.path.join(dir, f))
if not lexists:
continue
rel_child = os.path.join(rel_path, f.name)
islink = f.is_symlink()
# On Windows, symlinks to directories are distinct from
# symlinks to files, and it is possible to create a
# broken symlink to a directory (e.g. using os.symlink
# without `target_is_directory=True`), invoking `isdir`
# on a symlink on Windows that is broken in this manner
# will result in an error. In this case we can work around
# the issue by reading the target and resolving the
# directory ourselves
try:
isdir = f.is_dir()
except OSError as e:
if is_windows and hasattr(e, "winerror") and e.winerror == 5 and islink:
# if path is a symlink, determine destination and
# evaluate file vs directory
link_target = resolve_link_target_relative_to_the_link(f)
# link_target might be relative but
# resolve_link_target_relative_to_the_link
# will ensure that if so, that it is relative
# to the CWD and therefore
# makes sense
isdir = os.path.isdir(link_target)
else:
raise e
if not isdir and not islink:
# handle non-symlink files
@@ -1609,14 +1593,14 @@ def find(root, files, recursive=True):
Parameters:
root (str): The root directory to start searching from
files (str or Sequence): Library name(s) to search for
files (str or collections.abc.Sequence): Library name(s) to search for
recursive (bool): if False search only root folder,
if True descends top-down from the root. Defaults to True.
Returns:
list: The files that have been found
"""
if isinstance(files, six.string_types):
if isinstance(files, str):
files = [files]
if recursive:
@@ -1673,14 +1657,14 @@ def _find_non_recursive(root, search_files):
# Utilities for libraries and headers
class FileList(Sequence):
class FileList(collections.abc.Sequence):
"""Sequence of absolute paths to files.
Provides a few convenience methods to manipulate file paths.
"""
def __init__(self, files):
if isinstance(files, six.string_types):
if isinstance(files, str):
files = [files]
self.files = list(dedupe(files))
@@ -1776,7 +1760,7 @@ def directories(self):
def directories(self, value):
value = value or []
# Accept a single directory as input
if isinstance(value, six.string_types):
if isinstance(value, str):
value = [value]
self._directories = [path_to_os_path(os.path.normpath(x))[0] for x in value]
@@ -1912,9 +1896,9 @@ def find_headers(headers, root, recursive=False):
Returns:
HeaderList: The headers that have been found
"""
if isinstance(headers, six.string_types):
if isinstance(headers, str):
headers = [headers]
elif not isinstance(headers, Sequence):
elif not isinstance(headers, collections.abc.Sequence):
message = "{0} expects a string or sequence of strings as the "
message += "first argument [got {1} instead]"
message = message.format(find_headers.__name__, type(headers))
@@ -2078,9 +2062,9 @@ def find_system_libraries(libraries, shared=True):
Returns:
LibraryList: The libraries that have been found
"""
if isinstance(libraries, six.string_types):
if isinstance(libraries, str):
libraries = [libraries]
elif not isinstance(libraries, Sequence):
elif not isinstance(libraries, collections.abc.Sequence):
message = "{0} expects a string or sequence of strings as the "
message += "first argument [got {1} instead]"
message = message.format(find_system_libraries.__name__, type(libraries))
@@ -2135,9 +2119,9 @@ def find_libraries(libraries, root, shared=True, recursive=False, runtime=True):
Returns:
LibraryList: The libraries that have been found
"""
if isinstance(libraries, six.string_types):
if isinstance(libraries, str):
libraries = [libraries]
elif not isinstance(libraries, Sequence):
elif not isinstance(libraries, collections.abc.Sequence):
message = "{0} expects a string or sequence of strings as the "
message += "first argument [got {1} instead]"
message = message.format(find_libraries.__name__, type(libraries))

View File

@@ -5,9 +5,11 @@
from __future__ import division
import collections.abc
import contextlib
import functools
import inspect
import itertools
import os
import re
import sys
@@ -15,11 +17,6 @@
from datetime import datetime, timedelta
from typing import Any, Callable, Iterable, List, Tuple
import six
from six import string_types
from llnl.util.compat import MutableMapping, MutableSequence, zip_longest
# Ignore emacs backups when listing modules
ignore_modules = [r"^\.#", "~$"]
@@ -200,14 +197,9 @@ def _memoized_function(*args, **kwargs):
return ret
except TypeError as e:
# TypeError is raised when indexing into a dict if the key is unhashable.
raise six.raise_from(
UnhashableArguments(
"args + kwargs '{}' was not hashable for function '{}'".format(
key, func.__name__
),
),
e,
)
raise UnhashableArguments(
"args + kwargs '{}' was not hashable for function '{}'".format(key, func.__name__),
) from e
return _memoized_function
@@ -312,7 +304,7 @@ def lazy_eq(lseq, rseq):
# zip_longest is implemented in native code, so use it for speed.
# use zip_longest instead of zip because it allows us to tell
# which iterator was longer.
for left, right in zip_longest(liter, riter, fillvalue=done):
for left, right in itertools.zip_longest(liter, riter, fillvalue=done):
if (left is done) or (right is done):
return False
@@ -332,7 +324,7 @@ def lazy_lt(lseq, rseq):
liter = lseq()
riter = rseq()
for left, right in zip_longest(liter, riter, fillvalue=done):
for left, right in itertools.zip_longest(liter, riter, fillvalue=done):
if (left is done) or (right is done):
return left is done # left was shorter than right
@@ -482,7 +474,7 @@ def add_func_to_class(name, func):
@lazy_lexicographic_ordering
class HashableMap(MutableMapping):
class HashableMap(collections.abc.MutableMapping):
"""This is a hashable, comparable dictionary. Hash is performed on
a tuple of the values in the dictionary."""
@@ -574,7 +566,7 @@ def match_predicate(*args):
def match(string):
for arg in args:
if isinstance(arg, string_types):
if isinstance(arg, str):
if re.search(arg, string):
return True
elif isinstance(arg, list) or isinstance(arg, tuple):
@@ -887,32 +879,28 @@ def load_module_from_file(module_name, module_path):
ImportError: when the module can't be loaded
FileNotFoundError: when module_path doesn't exist
"""
import importlib.util
if module_name in sys.modules:
return sys.modules[module_name]
# This recipe is adapted from https://stackoverflow.com/a/67692/771663
if sys.version_info[0] == 3 and sys.version_info[1] >= 5:
import importlib.util
spec = importlib.util.spec_from_file_location(module_name, module_path) # novm
module = importlib.util.module_from_spec(spec) # novm
# The module object needs to exist in sys.modules before the
# loader executes the module code.
#
# See https://docs.python.org/3/reference/import.html#loading
sys.modules[spec.name] = module
spec = importlib.util.spec_from_file_location(module_name, module_path) # novm
module = importlib.util.module_from_spec(spec) # novm
# The module object needs to exist in sys.modules before the
# loader executes the module code.
#
# See https://docs.python.org/3/reference/import.html#loading
sys.modules[spec.name] = module
try:
spec.loader.exec_module(module)
except BaseException:
try:
spec.loader.exec_module(module)
except BaseException:
try:
del sys.modules[spec.name]
except KeyError:
pass
raise
elif sys.version_info[0] == 2:
import imp
module = imp.load_source(module_name, module_path)
del sys.modules[spec.name]
except KeyError:
pass
raise
return module
@@ -1030,7 +1018,7 @@ def ensure_last(lst, *elements):
lst.append(lst.pop(lst.index(elt)))
class TypedMutableSequence(MutableSequence):
class TypedMutableSequence(collections.abc.MutableSequence):
"""Base class that behaves like a list, just with a different type.
Client code can inherit from this base class:

View File

@@ -9,7 +9,6 @@
import sys
import time
from datetime import datetime
from typing import Dict, Tuple # novm
import llnl.util.tty as tty
from llnl.util.lang import pretty_seconds
@@ -81,7 +80,7 @@ class OpenFileTracker(object):
def __init__(self):
"""Create a new ``OpenFileTracker``."""
self._descriptors = {} # type: Dict[Tuple[int, int], OpenFile]
self._descriptors = {}
def get_fh(self, path):
"""Get a filehandle for a lockfile.
@@ -103,7 +102,7 @@ def get_fh(self, path):
try:
# see whether we've seen this inode/pid before
stat = os.stat(path)
key = (stat.st_ino, pid)
key = (stat.st_dev, stat.st_ino, pid)
open_file = self._descriptors.get(key)
except OSError as e:
@@ -129,32 +128,32 @@ def get_fh(self, path):
# if we just created the file, we'll need to get its inode here
if not stat:
inode = os.fstat(fd).st_ino
key = (inode, pid)
stat = os.fstat(fd)
key = (stat.st_dev, stat.st_ino, pid)
self._descriptors[key] = open_file
open_file.refs += 1
return open_file.fh
def release_fh(self, path):
"""Release a filehandle, only closing it if there are no more references."""
try:
inode = os.stat(path).st_ino
except OSError as e:
if e.errno != errno.ENOENT: # only handle file not found
raise
inode = None # this will not be in self._descriptors
key = (inode, os.getpid())
def release_by_stat(self, stat):
key = (stat.st_dev, stat.st_ino, os.getpid())
open_file = self._descriptors.get(key)
assert open_file, "Attempted to close non-existing lock path: %s" % path
assert open_file, "Attempted to close non-existing inode: %s" % stat.st_inode
open_file.refs -= 1
if not open_file.refs:
del self._descriptors[key]
open_file.fh.close()
def release_by_fh(self, fh):
self.release_by_stat(os.fstat(fh.fileno()))
def purge(self):
for key in list(self._descriptors.keys()):
self._descriptors[key].fh.close()
del self._descriptors[key]
#: Open file descriptors for locks in this process. Used to prevent one process
#: from opening the sam file many times for different byte range locks
@@ -432,8 +431,7 @@ def _unlock(self):
"""
fcntl.lockf(self._file, fcntl.LOCK_UN, self._length, self._start, os.SEEK_SET)
file_tracker.release_fh(self.path)
file_tracker.release_by_fh(self._file)
self._file = None
self._reads = 0
self._writes = 0

View File

@@ -24,7 +24,7 @@ def symlink(real_path, link_path):
On Windows, use junctions if os.symlink fails.
"""
if not is_windows or _win32_can_symlink():
os.symlink(real_path, link_path)
os.symlink(real_path, link_path, target_is_directory=os.path.isdir(real_path))
else:
try:
# Try to use junctions

View File

@@ -6,6 +6,7 @@
from __future__ import unicode_literals
import contextlib
import io
import os
import struct
import sys
@@ -14,10 +15,6 @@
from datetime import datetime
from sys import platform as _platform
import six
from six import StringIO
from six.moves import input
if _platform != "win32":
import fcntl
import termios
@@ -183,7 +180,7 @@ def msg(message, *args, **kwargs):
else:
cwrite("@*b{%s==>} %s%s" % (st_text, get_timestamp(), cescape(_output_filter(message))))
for arg in args:
print(indent + _output_filter(six.text_type(arg)))
print(indent + _output_filter(str(arg)))
def info(message, *args, **kwargs):
@@ -201,13 +198,13 @@ def info(message, *args, **kwargs):
st_text = process_stacktrace(st_countback)
cprint(
"@%s{%s==>} %s%s"
% (format, st_text, get_timestamp(), cescape(_output_filter(six.text_type(message)))),
% (format, st_text, get_timestamp(), cescape(_output_filter(str(message)))),
stream=stream,
)
for arg in args:
if wrap:
lines = textwrap.wrap(
_output_filter(six.text_type(arg)),
_output_filter(str(arg)),
initial_indent=indent,
subsequent_indent=indent,
break_long_words=break_long_words,
@@ -215,7 +212,7 @@ def info(message, *args, **kwargs):
for line in lines:
stream.write(line + "\n")
else:
stream.write(indent + _output_filter(six.text_type(arg)) + "\n")
stream.write(indent + _output_filter(str(arg)) + "\n")
def verbose(message, *args, **kwargs):
@@ -238,7 +235,7 @@ def error(message, *args, **kwargs):
kwargs.setdefault("format", "*r")
kwargs.setdefault("stream", sys.stderr)
info("Error: " + six.text_type(message), *args, **kwargs)
info("Error: " + str(message), *args, **kwargs)
def warn(message, *args, **kwargs):
@@ -247,7 +244,7 @@ def warn(message, *args, **kwargs):
kwargs.setdefault("format", "*Y")
kwargs.setdefault("stream", sys.stderr)
info("Warning: " + six.text_type(message), *args, **kwargs)
info("Warning: " + str(message), *args, **kwargs)
def die(message, *args, **kwargs):
@@ -271,7 +268,7 @@ def get_number(prompt, **kwargs):
while number is None:
msg(prompt, newline=False)
ans = input()
if ans == six.text_type(abort):
if ans == str(abort):
return None
if ans:
@@ -336,11 +333,11 @@ def hline(label=None, **kwargs):
cols -= 2
cols = min(max_width, cols)
label = six.text_type(label)
label = str(label)
prefix = char * 2 + " "
suffix = " " + (cols - len(prefix) - clen(label)) * char
out = StringIO()
out = io.StringIO()
out.write(prefix)
out.write(label)
out.write(suffix)
@@ -372,10 +369,5 @@ def ioctl_gwinsz(fd):
return int(rc[0]), int(rc[1])
else:
if sys.version_info[0] < 3:
raise RuntimeError(
"Terminal size not obtainable on Windows with a\
Python version older than 3"
)
rc = (os.environ.get("LINES", 25), os.environ.get("COLUMNS", 80))
return int(rc[0]), int(rc[1])

View File

@@ -8,11 +8,10 @@
"""
from __future__ import division, unicode_literals
import io
import os
import sys
from six import StringIO, text_type
from llnl.util.tty import terminal_size
from llnl.util.tty.color import cextra, clen
@@ -134,7 +133,7 @@ def colify(elts, **options):
)
# elts needs to be an array of strings so we can count the elements
elts = [text_type(elt) for elt in elts]
elts = [str(elt) for elt in elts]
if not elts:
return (0, ())
@@ -232,7 +231,7 @@ def transpose():
def colified(elts, **options):
"""Invokes the ``colify()`` function but returns the result as a string
instead of writing it to an output string."""
sio = StringIO()
sio = io.StringIO()
options["output"] = sio
colify(elts, **options)
return sio.getvalue()

View File

@@ -65,8 +65,6 @@
import sys
from contextlib import contextmanager
import six
class ColorParseError(Exception):
"""Raised when a color format fails to parse."""
@@ -259,7 +257,7 @@ def cescape(string):
Returns:
(str): the string with color codes escaped
"""
string = six.text_type(string)
string = str(string)
string = string.replace("@", "@@")
string = string.replace("}", "}}")
return string

View File

@@ -24,8 +24,6 @@
from types import ModuleType # novm
from typing import Optional # novm
from six import StringIO, string_types
import llnl.util.tty as tty
termios = None # type: Optional[ModuleType]
@@ -241,8 +239,7 @@ def __exit__(self, exc_type, exception, traceback):
"""If termios was available, restore old settings."""
if self.old_cfg:
self._restore_default_terminal_settings()
if sys.version_info >= (3,):
atexit.unregister(self._restore_default_terminal_settings)
atexit.unregister(self._restore_default_terminal_settings)
# restore SIGSTP and SIGCONT handlers
if self.old_handlers:
@@ -309,7 +306,7 @@ def __init__(self, file_like):
self.file_like = file_like
if isinstance(file_like, string_types):
if isinstance(file_like, str):
self.open = True
elif _file_descriptors_work(file_like):
self.open = False
@@ -323,12 +320,9 @@ def __init__(self, file_like):
def unwrap(self):
if self.open:
if self.file_like:
if sys.version_info < (3,):
self.file = open(self.file_like, "w")
else:
self.file = open(self.file_like, "w", encoding="utf-8") # novm
self.file = open(self.file_like, "w", encoding="utf-8")
else:
self.file = StringIO()
self.file = io.StringIO()
return self.file
else:
# We were handed an already-open file object. In this case we also
@@ -699,13 +693,10 @@ def __init__(self, sys_attr):
self.sys_attr = sys_attr
self.saved_stream = None
if sys.platform.startswith("win32"):
if sys.version_info < (3, 5):
libc = ctypes.CDLL(ctypes.util.find_library("c"))
if hasattr(sys, "gettotalrefcount"): # debug build
libc = ctypes.CDLL("ucrtbased")
else:
if hasattr(sys, "gettotalrefcount"): # debug build
libc = ctypes.CDLL("ucrtbased")
else:
libc = ctypes.CDLL("api-ms-win-crt-stdio-l1-1-0")
libc = ctypes.CDLL("api-ms-win-crt-stdio-l1-1-0")
kernel32 = ctypes.WinDLL("kernel32")
@@ -794,7 +785,7 @@ def __enter__(self):
raise RuntimeError("file argument must be set by __init__ ")
# Open both write and reading on logfile
if type(self.logfile) == StringIO:
if type(self.logfile) == io.StringIO:
self._ioflag = True
# cannot have two streams on tempfile, so we must make our own
sys.stdout = self.logfile
@@ -927,13 +918,10 @@ def _writer_daemon(
if sys.version_info < (3, 8) or sys.platform != "darwin":
os.close(write_fd)
# Use line buffering (3rd param = 1) since Python 3 has a bug
# 1. Use line buffering (3rd param = 1) since Python 3 has a bug
# that prevents unbuffered text I/O.
if sys.version_info < (3,):
in_pipe = os.fdopen(read_multiprocess_fd.fd, "r", 1)
else:
# Python 3.x before 3.7 does not open with UTF-8 encoding by default
in_pipe = os.fdopen(read_multiprocess_fd.fd, "r", 1, encoding="utf-8")
# 2. Python 3.x before 3.7 does not open with UTF-8 encoding by default
in_pipe = os.fdopen(read_multiprocess_fd.fd, "r", 1, encoding="utf-8")
if stdin_multiprocess_fd:
stdin = os.fdopen(stdin_multiprocess_fd.fd)
@@ -1023,7 +1011,7 @@ def _writer_daemon(
finally:
# send written data back to parent if we used a StringIO
if isinstance(log_file, StringIO):
if isinstance(log_file, io.StringIO):
control_pipe.send(log_file.getvalue())
log_file_wrapper.close()
close_connection_and_file(read_multiprocess_fd, in_pipe)

View File

@@ -4,7 +4,7 @@
# SPDX-License-Identifier: (Apache-2.0 OR MIT)
#: PEP440 canonical <major>.<minor>.<micro>.<devN> string
__version__ = "0.19.0.dev0"
__version__ = "0.20.0.dev0"
spack_version = __version__

View File

@@ -37,15 +37,14 @@ def _search_duplicate_compilers(error_cls):
"""
import ast
import collections
import collections.abc
import inspect
import itertools
import pickle
import re
from six.moves.urllib.request import urlopen
from urllib.request import urlopen
import llnl.util.lang
from llnl.util.compat import Sequence
import spack.config
import spack.patch
@@ -81,7 +80,7 @@ def __hash__(self):
return hash(value)
class AuditClass(Sequence):
class AuditClass(collections.abc.Sequence):
def __init__(self, group, tag, description, kwargs):
"""Return an object that acts as a decorator to register functions
associated with a specific class of sanity checks.
@@ -288,7 +287,7 @@ def _check_build_test_callbacks(pkgs, error_cls):
errors = []
for pkg_name in pkgs:
pkg_cls = spack.repo.path.get_pkg_class(pkg_name)
test_callbacks = pkg_cls.build_time_test_callbacks
test_callbacks = getattr(pkg_cls, "build_time_test_callbacks", None)
if test_callbacks and "test" in test_callbacks:
msg = '{0} package contains "test" method in ' "build_time_test_callbacks"

View File

@@ -17,9 +17,9 @@
import traceback
import warnings
from contextlib import closing
from urllib.error import HTTPError, URLError
import ruamel.yaml as yaml
from six.moves.urllib.error import HTTPError, URLError
import llnl.util.filesystem as fsys
import llnl.util.lang
@@ -1634,7 +1634,7 @@ def make_package_relative(workdir, spec, allow_root):
if "elf" in platform.binary_formats:
relocate.make_elf_binaries_relative(cur_path_names, orig_path_names, old_layout_root)
relocate.raise_if_not_relocatable(cur_path_names, allow_root)
allow_root or relocate.ensure_binaries_are_relocatable(cur_path_names)
orig_path_names = list()
cur_path_names = list()
for linkname in buildinfo.get("relocate_links", []):
@@ -1652,7 +1652,7 @@ def check_package_relocatable(workdir, spec, allow_root):
cur_path_names = list()
for filename in buildinfo["relocate_binaries"]:
cur_path_names.append(os.path.join(workdir, filename))
relocate.raise_if_not_relocatable(cur_path_names, allow_root)
allow_root or relocate.ensure_binaries_are_relocatable(cur_path_names)
def dedupe_hardlinks_if_necessary(root, buildinfo):

View File

@@ -17,8 +17,6 @@
import sysconfig
import uuid
import six
import archspec.cpu
import llnl.util.filesystem as fs
@@ -78,7 +76,7 @@ def _try_import_from_store(module, query_spec, query_info=None):
command found and the concrete spec providing it
"""
# If it is a string assume it's one of the root specs by this module
if isinstance(query_spec, six.string_types):
if isinstance(query_spec, str):
# We have to run as part of this python interpreter
query_spec += " ^" + spec_for_current_python()
@@ -92,13 +90,6 @@ def _try_import_from_store(module, query_spec, query_info=None):
] # type: list[str]
path_before = list(sys.path)
# Python 3.8+ on Windows does not search dependent DLLs in PATH,
# so we need to manually add it using os.add_dll_directory
# https://docs.python.org/3/whatsnew/3.8.html#bpo-36085-whatsnew
if sys.version_info[:2] >= (3, 8) and sys.platform == "win32":
if os.path.isdir(candidate_spec.prefix.bin):
os.add_dll_directory(candidate_spec.prefix.bin) # novermin
# NOTE: try module_paths first and last, last allows an existing version in path
# to be picked up and used, possibly depending on something in the store, first
# allows the bootstrap version to work when an incompatible version is in
@@ -476,21 +467,14 @@ def source_is_enabled_or_raise(conf):
def spec_for_current_python():
"""For bootstrapping purposes we are just interested in the Python
minor version (all patches are ABI compatible with the same minor)
and on whether ucs4 support has been enabled for Python 2.7
minor version (all patches are ABI compatible with the same minor).
See:
https://www.python.org/dev/peps/pep-0513/
https://stackoverflow.com/a/35801395/771663
"""
version_str = ".".join(str(x) for x in sys.version_info[:2])
variant_str = ""
if sys.version_info[0] == 2 and sys.version_info[1] == 7:
unicode_size = sysconfig.get_config_var("Py_UNICODE_SIZE")
variant_str = "+ucs4" if unicode_size == 4 else "~ucs4"
spec_fmt = "python@{0} {1}"
return spec_fmt.format(version_str, variant_str)
return "python@{0}".format(version_str)
@contextlib.contextmanager
@@ -873,9 +857,7 @@ def ensure_mypy_in_path_or_raise():
def black_root_spec():
# black v21 is the last version to support Python 2.7.
# Upgrade when we no longer support Python 2.7
return _root_spec("py-black@:21")
return _root_spec("py-black")
def ensure_black_in_path_or_raise():
@@ -932,7 +914,7 @@ def _missing(name, purpose, system_only=True):
def _required_system_executable(exes, msg):
"""Search for an executable is the system path only."""
if isinstance(exes, six.string_types):
if isinstance(exes, str):
exes = (exes,)
if spack.util.executable.which_string(*exes):
return True, None
@@ -950,7 +932,7 @@ def _required_python_module(module, query_spec, msg):
def _required_executable(exes, query_spec, msg):
"""Search for an executable in the system path or in the bootstrap store."""
if isinstance(exes, six.string_types):
if isinstance(exes, str):
exes = (exes,)
if spack.util.executable.which_string(*exes) or _executables_in_store(exes, query_spec):
return True, None

View File

@@ -33,6 +33,7 @@
calls you can make from within the install() function.
"""
import inspect
import io
import multiprocessing
import os
import re
@@ -41,8 +42,6 @@
import traceback
import types
from six import StringIO
import llnl.util.tty as tty
from llnl.util.filesystem import install, install_tree, mkdirp
from llnl.util.lang import dedupe
@@ -285,6 +284,23 @@ def clean_environment():
return env
def _add_werror_handling(keep_werror, env):
keep_flags = set()
# set of pairs
replace_flags = [] # type: List[Tuple[str,str]]
if keep_werror == "all":
keep_flags.add("-Werror*")
else:
if keep_werror == "specific":
keep_flags.add("-Werror-*")
keep_flags.add("-Werror=*")
# This extra case is to handle -Werror-implicit-function-declaration
replace_flags.append(("-Werror-", "-Wno-error="))
replace_flags.append(("-Werror", "-Wno-error"))
env.set("SPACK_COMPILER_FLAGS_KEEP", "|".join(keep_flags))
env.set("SPACK_COMPILER_FLAGS_REPLACE", " ".join(["|".join(item) for item in replace_flags]))
def set_compiler_environment_variables(pkg, env):
assert pkg.spec.concrete
compiler = pkg.compiler
@@ -331,6 +347,13 @@ def set_compiler_environment_variables(pkg, env):
env.set("SPACK_DTAGS_TO_STRIP", compiler.disable_new_dtags)
env.set("SPACK_DTAGS_TO_ADD", compiler.enable_new_dtags)
if pkg.keep_werror is not None:
keep_werror = pkg.keep_werror
else:
keep_werror = spack.config.get("config:flags:keep_werror")
_add_werror_handling(keep_werror, env)
# Set the target parameters that the compiler will add
# Don't set on cray platform because the targeting module handles this
if spec.satisfies("platform=cray"):
@@ -353,10 +376,8 @@ def set_compiler_environment_variables(pkg, env):
if isinstance(pkg.flag_handler, types.FunctionType):
handler = pkg.flag_handler
else:
if sys.version_info >= (3, 0):
handler = pkg.flag_handler.__func__
else:
handler = pkg.flag_handler.im_func
handler = pkg.flag_handler.__func__
injf, envf, bsf = handler(pkg, flag, spec.compiler_flags[flag][:])
inject_flags[flag] = injf or []
env_flags[flag] = envf or []
@@ -542,14 +563,18 @@ def determine_number_of_jobs(
return min(max_cpus, config_default)
def _set_variables_for_single_module(pkg, module):
"""Helper function to set module variables for single module."""
def set_module_variables_for_package(pkg):
"""Populate the Python module of a package with some useful global names.
This makes things easier for package writers.
"""
# Put a marker on this module so that it won't execute the body of this
# function again, since it is not needed
marker = "_set_run_already_called"
if getattr(module, marker, False):
if getattr(pkg.module, marker, False):
return
module = ModuleChangePropagator(pkg)
jobs = determine_number_of_jobs(parallel=pkg.parallel)
m = module
@@ -569,6 +594,7 @@ def _set_variables_for_single_module(pkg, module):
if sys.platform == "win32":
m.nmake = Executable("nmake")
m.msbuild = Executable("msbuild")
# Standard CMake arguments
m.std_cmake_args = spack.build_systems.cmake.CMakeBuilder.std_args(pkg)
m.std_meson_args = spack.build_systems.meson.MesonBuilder.std_args(pkg)
@@ -616,20 +642,7 @@ def static_to_shared_library(static_lib, shared_lib=None, **kwargs):
# Put a marker on this module so that it won't execute the body of this
# function again, since it is not needed
setattr(m, marker, True)
def set_module_variables_for_package(pkg):
"""Populate the module scope of install() with some useful functions.
This makes things easier for package writers.
"""
# If a user makes their own package repo, e.g.
# spack.pkg.mystuff.libelf.Libelf, and they inherit from an existing class
# like spack.pkg.original.libelf.Libelf, then set the module variables
# for both classes so the parent class can still use them if it gets
# called. parent_class_modules includes pkg.module.
modules = parent_class_modules(pkg.__class__)
for mod in modules:
_set_variables_for_single_module(pkg, mod)
module.propagate_changes_to_mro()
def _static_to_shared_library(arch, compiler, static_lib, shared_lib=None, **kwargs):
@@ -739,25 +752,6 @@ def get_rpaths(pkg):
return list(dedupe(filter_system_paths(rpaths)))
def parent_class_modules(cls):
"""
Get list of superclass modules that descend from spack.package_base.PackageBase
Includes cls.__module__
"""
if not issubclass(cls, spack.package_base.PackageBase) or issubclass(
spack.package_base.PackageBase, cls
):
return []
result = []
module = sys.modules.get(cls.__module__)
if module:
result = [module]
for c in cls.__bases__:
result.extend(parent_class_modules(c))
return result
def load_external_modules(pkg):
"""Traverse a package's spec DAG and load any external modules.
@@ -978,22 +972,9 @@ def add_modifications_for_dep(dep):
if set_package_py_globals:
set_module_variables_for_package(dpkg)
# Allow dependencies to modify the module
# Get list of modules that may need updating
modules = []
for cls in inspect.getmro(type(spec.package)):
module = cls.module
if module == spack.package_base:
break
modules.append(module)
# Execute changes as if on a single module
# copy dict to ensure prior changes are available
changes = spack.util.pattern.Bunch()
dpkg.setup_dependent_package(changes, spec)
for module in modules:
module.__dict__.update(changes.__dict__)
current_module = ModuleChangePropagator(spec.package)
dpkg.setup_dependent_package(current_module, spec)
current_module.propagate_changes_to_mro()
if context == "build":
builder = spack.builder.create(dpkg)
@@ -1271,6 +1252,8 @@ def make_stack(tb, stack=None):
obj = frame.f_locals["self"]
if isinstance(obj, spack.package_base.PackageBase):
break
else:
return None
# We found obj, the Package implementation we care about.
# Point out the location in the install method where we failed.
@@ -1352,7 +1335,7 @@ def __init__(self, msg, module, classname, traceback_string, log_name, log_type,
@property
def long_message(self):
out = StringIO()
out = io.StringIO()
out.write(self._long_message if self._long_message else "")
have_log = self.log_name and os.path.exists(self.log_name)
@@ -1437,3 +1420,51 @@ def write_log_summary(out, log_type, log, last=None):
# If no errors are found but warnings are, display warnings
out.write("\n%s found in %s log:\n" % (plural(nwar, "warning"), log_type))
out.write(make_log_context(warnings))
class ModuleChangePropagator:
"""Wrapper class to accept changes to a package.py Python module, and propagate them in the
MRO of the package.
It is mainly used as a substitute of the ``package.py`` module, when calling the
"setup_dependent_package" function during build environment setup.
"""
_PROTECTED_NAMES = ("package", "current_module", "modules_in_mro", "_set_attributes")
def __init__(self, package):
self._set_self_attributes("package", package)
self._set_self_attributes("current_module", package.module)
#: Modules for the classes in the MRO up to PackageBase
modules_in_mro = []
for cls in inspect.getmro(type(package)):
module = cls.module
if module == self.current_module:
continue
if module == spack.package_base:
break
modules_in_mro.append(module)
self._set_self_attributes("modules_in_mro", modules_in_mro)
self._set_self_attributes("_set_attributes", {})
def _set_self_attributes(self, key, value):
super().__setattr__(key, value)
def __getattr__(self, item):
return getattr(self.current_module, item)
def __setattr__(self, key, value):
if key in ModuleChangePropagator._PROTECTED_NAMES:
msg = f'Cannot set attribute "{key}" in ModuleMonkeyPatcher'
return AttributeError(msg)
setattr(self.current_module, key, value)
self._set_attributes[key] = value
def propagate_changes_to_mro(self):
for module_in_mro in self.modules_in_mro:
module_in_mro.__dict__.update(self._set_attributes)

View File

@@ -4,8 +4,6 @@
# SPDX-License-Identifier: (Apache-2.0 OR MIT)
import os
import six
import llnl.util.lang
import spack.builder
@@ -26,7 +24,7 @@ def sanity_check_prefix(builder):
pkg = builder.pkg
def check_paths(path_list, filetype, predicate):
if isinstance(path_list, six.string_types):
if isinstance(path_list, str):
path_list = [path_list]
for path in path_list:
@@ -89,11 +87,11 @@ def ensure_build_dependencies_or_raise(spec, dependencies, error_msg):
)
for dep in missing_deps:
msg += " depends_on('{0}', type='build', when='@{1} {2}')\n".format(
msg += ' depends_on("{0}", type="build", when="@{1} {2}")\n'.format(
dep, spec.version, "build_system=autotools"
)
msg += "\nUpdate the version (when='@{0}') as needed.".format(spec.version)
msg += '\nUpdate the version (when="@{0}") as needed.'.format(spec.version)
raise RuntimeError(msg)

View File

@@ -2,6 +2,7 @@
# Spack Project Developers. See the top-level COPYRIGHT file for details.
#
# SPDX-License-Identifier: (Apache-2.0 OR MIT)
import collections.abc
import inspect
import os
import platform
@@ -9,10 +10,7 @@
import sys
from typing import List, Tuple
import six
import llnl.util.filesystem as fs
from llnl.util.compat import Sequence
import spack.build_environment
import spack.builder
@@ -302,7 +300,7 @@ def define(cmake_var, value):
value = "ON" if value else "OFF"
else:
kind = "STRING"
if isinstance(value, Sequence) and not isinstance(value, six.string_types):
if isinstance(value, collections.abc.Sequence) and not isinstance(value, str):
value = ";".join(str(v) for v in value)
else:
value = str(value)

View File

@@ -96,18 +96,33 @@ class ROCmPackage(PackageBase):
"gfx803",
"gfx900",
"gfx900:xnack-",
"gfx902",
"gfx904",
"gfx906",
"gfx908",
"gfx90a",
"gfx906:xnack-",
"gfx908",
"gfx908:xnack-",
"gfx909",
"gfx90a",
"gfx90a:xnack-",
"gfx90a:xnack+",
"gfx90c",
"gfx940",
"gfx1010",
"gfx1011",
"gfx1012",
"gfx1013",
"gfx1030",
"gfx1031",
"gfx1032",
"gfx1033",
"gfx1034",
"gfx1035",
"gfx1036",
"gfx1100",
"gfx1101",
"gfx1102",
"gfx1103",
)
variant("rocm", default=False, description="Enable ROCm support")
@@ -144,6 +159,29 @@ def hip_flags(amdgpu_target):
# depends_on('hip@:6.0', when='amdgpu_target=gfx701')
# to indicate minimum version for each architecture.
# Add compiler minimum versions based on the first release where the
# processor is included in llvm/lib/Support/TargetParser.cpp
depends_on("llvm-amdgpu@4.1.0:", when="amdgpu_target=gfx900:xnack-")
depends_on("llvm-amdgpu@4.1.0:", when="amdgpu_target=gfx906:xnack-")
depends_on("llvm-amdgpu@4.1.0:", when="amdgpu_target=gfx908:xnack-")
depends_on("llvm-amdgpu@4.1.0:", when="amdgpu_target=gfx90c")
depends_on("llvm-amdgpu@4.3.0:", when="amdgpu_target=gfx90a")
depends_on("llvm-amdgpu@4.3.0:", when="amdgpu_target=gfx90a:xnack-")
depends_on("llvm-amdgpu@4.3.0:", when="amdgpu_target=gfx90a:xnack+")
depends_on("llvm-amdgpu@5.2.0:", when="amdgpu_target=gfx940")
depends_on("llvm-amdgpu@4.5.0:", when="amdgpu_target=gfx1013")
depends_on("llvm-amdgpu@3.8.0:", when="amdgpu_target=gfx1030")
depends_on("llvm-amdgpu@3.9.0:", when="amdgpu_target=gfx1031")
depends_on("llvm-amdgpu@4.1.0:", when="amdgpu_target=gfx1032")
depends_on("llvm-amdgpu@4.1.0:", when="amdgpu_target=gfx1033")
depends_on("llvm-amdgpu@4.3.0:", when="amdgpu_target=gfx1034")
depends_on("llvm-amdgpu@4.5.0:", when="amdgpu_target=gfx1035")
depends_on("llvm-amdgpu@5.2.0:", when="amdgpu_target=gfx1036")
depends_on("llvm-amdgpu@5.3.0:", when="amdgpu_target=gfx1100")
depends_on("llvm-amdgpu@5.3.0:", when="amdgpu_target=gfx1101")
depends_on("llvm-amdgpu@5.3.0:", when="amdgpu_target=gfx1102")
depends_on("llvm-amdgpu@5.3.0:", when="amdgpu_target=gfx1103")
# Compiler conflicts
# TODO: add conflicts statements along the lines of

View File

@@ -157,7 +157,7 @@ def configure(self, pkg, spec, prefix):
]
)
self.python(configure, *args)
self.pkg.python(configure, *args)
def configure_args(self):
"""Arguments to pass to configure."""

View File

@@ -72,9 +72,9 @@ class WafBuilder(BaseBuilder):
#: Names associated with package attributes in the old build-system format
legacy_attributes = (
"build_time_test_callbacks",
"build_time_test_callbacks",
"build_directory",
"install_time_test_callbacks",
)
# Callback names for build-time test

View File

@@ -3,15 +3,12 @@
#
# SPDX-License-Identifier: (Apache-2.0 OR MIT)
import collections
import collections.abc
import copy
import functools
import inspect
from typing import List, Optional, Tuple
import six
import llnl.util.compat
import spack.build_environment
#: Builder classes, as registered by the "builder" decorator
@@ -168,7 +165,7 @@ def __forward(self):
property(forward_property_to_getattr(attribute_name)),
)
class Adapter(six.with_metaclass(_PackageAdapterMeta, base_cls)):
class Adapter(base_cls, metaclass=_PackageAdapterMeta):
def __init__(self, pkg):
# Deal with custom phases in packages here
if hasattr(pkg, "phases"):
@@ -280,7 +277,7 @@ def _decorator(fn):
return _decorator
class BuilderMeta(PhaseCallbacksMeta, type(llnl.util.compat.Sequence)): # type: ignore
class BuilderMeta(PhaseCallbacksMeta, type(collections.abc.Sequence)): # type: ignore
pass
@@ -457,7 +454,7 @@ def copy(self):
return copy.deepcopy(self)
class Builder(six.with_metaclass(BuilderMeta, llnl.util.compat.Sequence)):
class Builder(collections.abc.Sequence, metaclass=BuilderMeta):
"""A builder is a class that, given a package object (i.e. associated with
concrete spec), knows how to install it.

View File

@@ -16,11 +16,9 @@
import tempfile
import time
import zipfile
from six import iteritems, string_types
from six.moves.urllib.error import HTTPError, URLError
from six.moves.urllib.parse import urlencode
from six.moves.urllib.request import HTTPHandler, Request, build_opener
from urllib.error import HTTPError, URLError
from urllib.parse import urlencode
from urllib.request import HTTPHandler, Request, build_opener
import llnl.util.filesystem as fs
import llnl.util.tty as tty
@@ -215,7 +213,7 @@ def stage_spec_jobs(specs, check_index_only=False, mirrors_to_check=None):
def _remove_satisfied_deps(deps, satisfied_list):
new_deps = {}
for key, value in iteritems(deps):
for key, value in deps.items():
new_value = set([v for v in value if v not in satisfied_list])
if new_value:
new_deps[key] = new_value
@@ -1769,9 +1767,9 @@ def reproduce_ci_job(url, work_dir):
download_and_extract_artifacts(url, work_dir)
lock_file = fs.find(work_dir, "spack.lock")[0]
concrete_env_dir = os.path.dirname(lock_file)
repro_lock_dir = os.path.dirname(lock_file)
tty.debug("Concrete environment directory: {0}".format(concrete_env_dir))
tty.debug("Found lock file in: {0}".format(repro_lock_dir))
yaml_files = fs.find(work_dir, ["*.yaml", "*.yml"])
@@ -1794,6 +1792,20 @@ def reproduce_ci_job(url, work_dir):
if pipeline_yaml:
tty.debug("\n{0} is likely your pipeline file".format(yf))
relative_concrete_env_dir = pipeline_yaml["variables"]["SPACK_CONCRETE_ENV_DIR"]
tty.debug("Relative environment path used by cloud job: {0}".format(relative_concrete_env_dir))
# Using the relative concrete environment path found in the generated
# pipeline variable above, copy the spack environment files so they'll
# be found in the same location as when the job ran in the cloud.
concrete_env_dir = os.path.join(work_dir, relative_concrete_env_dir)
os.makedirs(concrete_env_dir, exist_ok=True)
copy_lock_path = os.path.join(concrete_env_dir, "spack.lock")
orig_yaml_path = os.path.join(repro_lock_dir, "spack.yaml")
copy_yaml_path = os.path.join(concrete_env_dir, "spack.yaml")
shutil.copyfile(lock_file, copy_lock_path)
shutil.copyfile(orig_yaml_path, copy_yaml_path)
# Find the install script in the unzipped artifacts and make it executable
install_script = fs.find(work_dir, "install.sh")[0]
st = os.stat(install_script)
@@ -1849,6 +1861,7 @@ def reproduce_ci_job(url, work_dir):
if repro_details:
mount_as_dir = repro_details["ci_project_dir"]
mounted_repro_dir = os.path.join(mount_as_dir, rel_repro_dir)
mounted_env_dir = os.path.join(mount_as_dir, relative_concrete_env_dir)
# We will also try to clone spack from your local checkout and
# reproduce the state present during the CI build, and put that into
@@ -1932,7 +1945,7 @@ def reproduce_ci_job(url, work_dir):
inst_list.append(" $ source {0}/share/spack/setup-env.sh\n".format(spack_root))
inst_list.append(
" $ spack env activate --without-view {0}\n\n".format(
mounted_repro_dir if job_image else repro_dir
mounted_env_dir if job_image else repro_dir
)
)
inst_list.append(" - Run the install script\n\n")
@@ -1960,7 +1973,7 @@ def process_command(name, commands, repro_dir):
"""
tty.debug("spack {0} arguments: {1}".format(name, commands))
if len(commands) == 0 or isinstance(commands[0], string_types):
if len(commands) == 0 or isinstance(commands[0], str):
commands = [commands]
# Create a string [command 1] && [command 2] && ... && [command n] with commands

View File

@@ -2,12 +2,11 @@
# Spack Project Developers. See the top-level COPYRIGHT file for details.
#
# SPDX-License-Identifier: (Apache-2.0 OR MIT)
from llnl.util.compat import Mapping
import collections.abc
get_job_name = lambda needs_entry: (
needs_entry.get("job")
if (isinstance(needs_entry, Mapping) and needs_entry.get("artifacts", True))
if (isinstance(needs_entry, collections.abc.Mapping) and needs_entry.get("artifacts", True))
else needs_entry
if isinstance(needs_entry, str)
else None
@@ -15,7 +14,7 @@
def convert_job(job_entry):
if not isinstance(job_entry, Mapping):
if not isinstance(job_entry, collections.abc.Mapping):
return job_entry
needs = job_entry.get("needs")

View File

@@ -2,23 +2,21 @@
# Spack Project Developers. See the top-level COPYRIGHT file for details.
#
# SPDX-License-Identifier: (Apache-2.0 OR MIT)
import collections
import collections.abc
import copy
import hashlib
from collections import defaultdict
from llnl.util.compat import Mapping, Sequence
import spack.util.spack_yaml as syaml
def sort_yaml_obj(obj):
if isinstance(obj, Mapping):
if isinstance(obj, collections.abc.Mapping):
return syaml.syaml_dict(
(k, sort_yaml_obj(v)) for k, v in sorted(obj.items(), key=(lambda item: str(item[0])))
)
if isinstance(obj, Sequence) and not isinstance(obj, str):
if isinstance(obj, collections.abc.Sequence) and not isinstance(obj, str):
return syaml.syaml_list(sort_yaml_obj(x) for x in obj)
return obj
@@ -38,15 +36,15 @@ def matches(obj, proto):
Precondition: proto must not have any reference cycles
"""
if isinstance(obj, Mapping):
if not isinstance(proto, Mapping):
if isinstance(obj, collections.abc.Mapping):
if not isinstance(proto, collections.abc.Mapping):
return False
return all((key in obj and matches(obj[key], val)) for key, val in proto.items())
if isinstance(obj, Sequence) and not isinstance(obj, str):
if isinstance(obj, collections.abc.Sequence) and not isinstance(obj, str):
if not (isinstance(proto, Sequence) and not isinstance(proto, str)):
if not (isinstance(proto, collections.abc.Sequence) and not isinstance(proto, str)):
return False
if len(obj) != len(proto):
@@ -76,7 +74,9 @@ def subkeys(obj, proto):
Otherwise, obj is returned.
"""
if not (isinstance(obj, Mapping) and isinstance(proto, Mapping)):
if not (
isinstance(obj, collections.abc.Mapping) and isinstance(proto, collections.abc.Mapping)
):
return obj
new_obj = {}
@@ -88,7 +88,7 @@ def subkeys(obj, proto):
if matches(value, proto[key]) and matches(proto[key], value):
continue
if isinstance(value, Mapping):
if isinstance(value, collections.abc.Mapping):
new_obj[key] = subkeys(value, proto[key])
continue
@@ -116,7 +116,7 @@ def add_extends(yaml, key):
has_key = "extends" in yaml
extends = yaml.get("extends")
if has_key and not isinstance(extends, (str, Sequence)):
if has_key and not isinstance(extends, (str, collections.abc.Sequence)):
return
if extends is None:
@@ -261,7 +261,7 @@ def build_histogram(iterator, key):
The list is sorted in descending order by count, yielding the most
frequently occuring hashes first.
"""
buckets = defaultdict(int)
buckets = collections.defaultdict(int)
values = {}
num_objects = 0

View File

@@ -14,7 +14,6 @@
from typing import List, Tuple
import ruamel.yaml as yaml
import six
from ruamel.yaml.error import MarkedYAMLError
import llnl.util.tty as tty
@@ -217,7 +216,7 @@ def parse_specs(args, **kwargs):
tests = kwargs.get("tests", False)
sargs = args
if not isinstance(args, six.string_types):
if not isinstance(args, str):
sargs = " ".join(args)
unquoted_flags = _UnquotedFlags.extract(sargs)

View File

@@ -8,7 +8,6 @@
import platform
import shutil
import tempfile
import warnings
import llnl.util.filesystem
import llnl.util.tty
@@ -112,18 +111,10 @@ def setup_parser(subparser):
list = sp.add_parser("list", help="list all the sources of software to bootstrap Spack")
_add_scope_option(list)
trust = sp.add_parser("trust", help="(DEPRECATED) trust a bootstrapping source")
_add_scope_option(trust)
trust.add_argument("name", help="name of the source to be trusted")
untrust = sp.add_parser("untrust", help="(DEPRECATED) untrust a bootstrapping source")
_add_scope_option(untrust)
untrust.add_argument("name", help="name of the source to be untrusted")
add = sp.add_parser("add", help="add a new source for bootstrapping")
_add_scope_option(add)
add.add_argument(
"--trust", action="store_true", help="trust the source immediately upon addition"
"--trust", action="store_true", help="enable the source immediately upon addition"
)
add.add_argument("name", help="name of the new source of software")
add.add_argument("metadata_dir", help="directory where to find metadata files")
@@ -156,9 +147,9 @@ def _enable_or_disable(args):
return
if value is True:
_trust(args)
_enable_source(args)
else:
_untrust(args)
_disable_source(args)
def _reset(args):
@@ -254,8 +245,14 @@ def sort_fn(x):
_print_method(s, trusted.get(s["name"], None))
def _write_trust_state(args, value):
name = args.name
def _write_bootstrapping_source_status(name, enabled, scope=None):
"""Write if a bootstrapping source is enable or disabled to config file.
Args:
name (str): name of the bootstrapping source.
enabled (bool): True if the source is enabled, False if it is disabled.
scope (None or str): configuration scope to modify. If none use the default scope.
"""
sources = spack.config.get("bootstrap:sources")
matches = [s for s in sources if s["name"] == name]
@@ -277,30 +274,18 @@ def _write_trust_state(args, value):
# Setting the scope explicitly is needed to not copy over to a new scope
# the entire default configuration for bootstrap.yaml
scope = args.scope or spack.config.default_modify_scope("bootstrap")
spack.config.add("bootstrap:trusted:{0}:{1}".format(name, str(value)), scope=scope)
scope = scope or spack.config.default_modify_scope("bootstrap")
spack.config.add("bootstrap:trusted:{0}:{1}".format(name, str(enabled)), scope=scope)
def _deprecate_command(deprecated_cmd, suggested_cmd):
msg = (
"the 'spack bootstrap {} ...' command is deprecated and will be "
"removed in v0.20, use 'spack bootstrap {} ...' instead"
)
warnings.warn(msg.format(deprecated_cmd, suggested_cmd))
def _trust(args):
if args.subcommand == "trust":
_deprecate_command("trust", "enable")
_write_trust_state(args, value=True)
def _enable_source(args):
_write_bootstrapping_source_status(args.name, enabled=True, scope=args.scope)
msg = '"{0}" is now enabled for bootstrapping'
llnl.util.tty.msg(msg.format(args.name))
def _untrust(args):
if args.subcommand == "untrust":
_deprecate_command("untrust", "disable")
_write_trust_state(args, value=False)
def _disable_source(args):
_write_bootstrapping_source_status(args.name, enabled=False, scope=args.scope)
msg = '"{0}" is now disabled and will not be used for bootstrapping'
llnl.util.tty.msg(msg.format(args.name))
@@ -364,7 +349,7 @@ def _add(args):
msg = 'New bootstrapping source "{0}" added in the "{1}" configuration scope'
llnl.util.tty.msg(msg.format(args.name, write_scope))
if args.trust:
_trust(args)
_enable_source(args)
def _remove(args):
@@ -465,8 +450,6 @@ def bootstrap(parser, args):
"reset": _reset,
"root": _root,
"list": _list,
"trust": _trust,
"untrust": _untrust,
"add": _add,
"remove": _remove,
"mirror": _mirror,

View File

@@ -454,7 +454,7 @@ def check_fn(args):
if not specs:
tty.msg("No specs provided, exiting.")
sys.exit(0)
return
for spec in specs:
spec.concretize()
@@ -467,9 +467,10 @@ def check_fn(args):
if not configured_mirrors:
tty.msg("No mirrors provided, exiting.")
sys.exit(0)
return
sys.exit(bindist.check_specs_against_mirrors(configured_mirrors, specs, args.output_file))
if bindist.check_specs_against_mirrors(configured_mirrors, specs, args.output_file) == 1:
sys.exit(1)
def download_fn(args):
@@ -479,11 +480,11 @@ def download_fn(args):
least one of the required buildcache components."""
if not args.spec and not args.spec_file:
tty.msg("No specs provided, exiting.")
sys.exit(0)
return
if not args.path:
tty.msg("No download path provided, exiting")
sys.exit(0)
return
spec = _concrete_spec_from_args(args)
result = bindist.download_single_spec(spec, args.path)
@@ -532,8 +533,6 @@ def save_specfile_fn(args):
root_spec_as_json, args.specfile_dir, args.specs.split(), spec_format
)
sys.exit(0)
def copy_buildcache_file(src_url, dest_url, local_path=None):
"""Copy from source url to destination url"""

View File

@@ -6,6 +6,7 @@
from __future__ import print_function
import argparse
import sys
import llnl.util.tty as tty
@@ -16,6 +17,7 @@
import spack.stage
import spack.util.crypto
from spack.package_base import deprecated_version, preferred_version
from spack.util.editor import editor
from spack.util.naming import valid_fully_qualified_module_name
from spack.version import VersionBase, ver
@@ -53,6 +55,13 @@ def setup_parser(subparser):
default=False,
help="checksum the preferred version only",
)
subparser.add_argument(
"-a",
"--add-to-package",
action="store_true",
default=False,
help="add new versions to package",
)
arguments.add_common_arguments(subparser, ["package"])
subparser.add_argument(
"versions", nargs=argparse.REMAINDER, help="versions to generate checksums for"
@@ -118,3 +127,46 @@ def checksum(parser, args):
print()
print(version_lines)
print()
if args.add_to_package:
filename = spack.repo.path.filename_for_package_name(pkg.name)
# Make sure we also have a newline after the last version
versions = [v + "\n" for v in version_lines.splitlines()]
versions.append("\n")
# We need to insert the versions in reversed order
versions.reverse()
versions.append(" # FIXME: Added by `spack checksum`\n")
version_line = None
with open(filename, "r") as f:
lines = f.readlines()
for i in range(len(lines)):
# Black is drunk, so this is what it looks like for now
# See https://github.com/psf/black/issues/2156 for more information
if lines[i].startswith(" # FIXME: Added by `spack checksum`") or lines[
i
].startswith(" version("):
version_line = i
break
if version_line is not None:
for v in versions:
lines.insert(version_line, v)
with open(filename, "w") as f:
f.writelines(lines)
msg = "opening editor to verify"
if not sys.stdout.isatty():
msg = "please verify"
tty.info(
"Added {0} new versions to {1}, "
"{2}.".format(len(versions) - 2, args.package, msg)
)
if sys.stdout.isatty():
editor(filename)
else:
tty.warn("Could not add new versions to {0}.".format(args.package))

View File

@@ -6,7 +6,6 @@
import json
import os
import shutil
import sys
import llnl.util.filesystem as fs
import llnl.util.tty as tty
@@ -498,7 +497,7 @@ def ci_rebuild(args):
bindist.download_single_spec(job_spec, build_cache_dir, mirror_url=matching_mirror)
# Now we are done and successful
sys.exit(0)
return 0
# Before beginning the install, if this is a "rebuild everything" pipeline, we
# only want to keep the mirror being used by the current pipeline as it's binary
@@ -566,8 +565,6 @@ def ci_rebuild(args):
"-o",
"Makefile",
"--use-buildcache=package:never,dependencies:only",
"--make-target-prefix",
"ci",
slash_hash, # limit to spec we're building
],
[
@@ -584,7 +581,7 @@ def ci_rebuild(args):
"SPACK_COLOR=always",
"SPACK_INSTALL_FLAGS={}".format(args_to_string(deps_install_args)),
"-j$(nproc)",
"ci/.install-deps/{}".format(job_spec.dag_hash()),
"install-deps/{}".format(job_spec.format("{name}-{version}-{hash}")),
],
spack_cmd + ["install"] + root_install_args,
]

View File

@@ -8,8 +8,6 @@
import argparse
import sys
from six import iteritems
import llnl.util.tty as tty
from llnl.util.lang import index_by
from llnl.util.tty.colify import colify
@@ -138,13 +136,13 @@ def compiler_info(args):
print("\t\t%s = %s" % (cpath, getattr(c, cpath, None)))
if c.flags:
print("\tflags:")
for flag, flag_value in iteritems(c.flags):
for flag, flag_value in c.flags.items():
print("\t\t%s = %s" % (flag, flag_value))
if len(c.environment) != 0:
if len(c.environment.get("set", {})) != 0:
print("\tenvironment:")
print("\t set:")
for key, value in iteritems(c.environment["set"]):
for key, value in c.environment["set"].items():
print("\t %s = %s" % (key, value))
if c.extra_rpaths:
print("\tExtra rpaths:")

View File

@@ -46,6 +46,14 @@ def setup_parser(subparser):
)
def shift(asp_function):
"""Transforms ``attr("foo", "bar")`` into ``foo("bar")``."""
if not asp_function.args:
raise ValueError(f"Can't shift ASP function with no arguments: {str(asp_function)}")
first, *rest = asp_function.args
return asp.AspFunction(first, rest)
def compare_specs(a, b, to_string=False, color=None):
"""
Generate a comparison, including diffs (for each side) and an intersection.
@@ -71,22 +79,24 @@ def compare_specs(a, b, to_string=False, color=None):
# get facts for specs, making sure to include build dependencies of concrete
# specs and to descend into dependency hashes so we include all facts.
a_facts = set(
t
for t in setup.spec_clauses(
shift(func)
for func in setup.spec_clauses(
a,
body=True,
expand_hashes=True,
concrete_build_deps=True,
)
if func.name == "attr"
)
b_facts = set(
t
for t in setup.spec_clauses(
shift(func)
for func in setup.spec_clauses(
b,
body=True,
expand_hashes=True,
concrete_build_deps=True,
)
if func.name == "attr"
)
# We want to present them to the user as simple key: values

View File

@@ -4,13 +4,12 @@
# SPDX-License-Identifier: (Apache-2.0 OR MIT)
import argparse
import io
import os
import shutil
import sys
import tempfile
import six
import llnl.util.filesystem as fs
import llnl.util.tty as tty
from llnl.util.tty.colify import colify
@@ -674,13 +673,16 @@ def build_cache_flag(self, depth):
return ""
def accept(self, node):
dag_hash = node.edge.spec.dag_hash()
fmt = "{name}-{version}-{hash}"
tgt = node.edge.spec.format(fmt)
spec_str = node.edge.spec.format(
"{name}{@version}{%compiler}{variants}{arch=architecture}"
)
buildcache_flag = self.build_cache_flag(node.depth)
prereqs = " ".join([self.target(dep.spec.dag_hash()) for dep in self.neighbors(node)])
self.adjacency_list.append((dag_hash, spec_str, buildcache_flag, prereqs))
prereqs = " ".join([self.target(dep.spec.format(fmt)) for dep in self.neighbors(node)])
self.adjacency_list.append(
(tgt, prereqs, node.edge.spec.dag_hash(), spec_str, buildcache_flag)
)
# We already accepted this
return True
@@ -691,6 +693,8 @@ def env_depfile(args):
spack.cmd.require_active_env(cmd_name="env depfile")
env = ev.active_environment()
# Special make targets are useful when including a makefile in another, and you
# need to "namespace" the targets to avoid conflicts.
if args.make_target_prefix is None:
target_prefix = os.path.join(env.env_subdir_path, "makedeps")
else:
@@ -707,10 +711,10 @@ def get_target(name):
return os.path.join(target_prefix, name)
def get_install_target(name):
return os.path.join(target_prefix, ".install", name)
return os.path.join(target_prefix, "install", name)
def get_install_deps_target(name):
return os.path.join(target_prefix, ".install-deps", name)
return os.path.join(target_prefix, "install-deps", name)
# What things do we build when running make? By default, we build the
# root specs. If specific specs are provided as input, we build those.
@@ -729,15 +733,24 @@ def get_install_deps_target(name):
)
# Root specs without deps are the prereqs for the environment target
root_install_targets = [get_install_target(h.dag_hash()) for h in roots]
root_install_targets = [get_install_target(h.format("{name}-{version}-{hash}")) for h in roots]
# Cleanable targets...
cleanable_targets = [get_install_target(h) for h, _, _, _ in make_targets.adjacency_list]
cleanable_targets.extend(
[get_install_deps_target(h) for h, _, _, _ in make_targets.adjacency_list]
)
# All install and install-deps targets
all_install_related_targets = []
buf = six.StringIO()
# Convenience shortcuts: ensure that `make install/pkg-version-hash` triggers
# <absolute path to env>/.spack-env/makedeps/install/pkg-version-hash in case
# we don't have a custom make target prefix.
phony_convenience_targets = []
for tgt, _, _, _, _ in make_targets.adjacency_list:
all_install_related_targets.append(get_install_target(tgt))
all_install_related_targets.append(get_install_deps_target(tgt))
if args.make_target_prefix is None:
phony_convenience_targets.append(os.path.join("install", tgt))
phony_convenience_targets.append(os.path.join("install-deps", tgt))
buf = io.StringIO()
template = spack.tengine.make_environment().get_template(os.path.join("depfile", "Makefile"))
@@ -746,15 +759,17 @@ def get_install_deps_target(name):
"all_target": get_target("all"),
"env_target": get_target("env"),
"clean_target": get_target("clean"),
"cleanable_targets": " ".join(cleanable_targets),
"all_install_related_targets": " ".join(all_install_related_targets),
"root_install_targets": " ".join(root_install_targets),
"dirs_target": get_target("dirs"),
"environment": env.path,
"install_target": get_target(".install"),
"install_deps_target": get_target(".install-deps"),
"install_target": get_target("install"),
"install_deps_target": get_target("install-deps"),
"any_hash_target": get_target("%"),
"jobserver_support": "+" if args.jobserver else "",
"adjacency_list": make_targets.adjacency_list,
"phony_convenience_targets": " ".join(phony_convenience_targets),
"target_prefix": target_prefix,
}
)

View File

@@ -140,13 +140,6 @@ def setup_parser(subparser):
subparser.add_argument("--start-date", help="earliest date of installation [YYYY-MM-DD]")
subparser.add_argument("--end-date", help="latest date of installation [YYYY-MM-DD]")
subparser.add_argument(
"-b",
"--bootstrap",
action="store_true",
help="show software in the internal bootstrap store",
)
arguments.add_common_arguments(subparser, ["constraint"])
@@ -251,23 +244,6 @@ def display_env(env, args, decorator, results):
def find(parser, args):
if args.bootstrap:
tty.warn(
"`spack find --bootstrap` is deprecated and will be removed in v0.19.",
"Use `spack --bootstrap find` instead.",
)
if args.bootstrap:
bootstrap_store_path = spack.bootstrap.store_path()
with spack.bootstrap.ensure_bootstrap_configuration():
msg = 'Showing internal bootstrap store at "{0}"'
tty.msg(msg.format(bootstrap_store_path))
_find(parser, args)
return
_find(parser, args)
def _find(parser, args):
q_args = query_arguments(args)
results = args.specs(**q_args)

View File

@@ -43,4 +43,4 @@ def gc(parser, args):
if not args.yes_to_all:
spack.cmd.uninstall.confirm_removal(specs)
spack.cmd.uninstall.do_uninstall(None, specs, force=False)
spack.cmd.uninstall.do_uninstall(specs, force=False)

View File

@@ -7,8 +7,7 @@
import inspect
import textwrap
from six.moves import zip_longest
from itertools import zip_longest
import llnl.util.tty as tty
import llnl.util.tty.color as color
@@ -242,8 +241,8 @@ def print_tests(pkg):
# So the presence of a callback in Spack does not necessarily correspond
# to the actual presence of built-time tests for a package.
for callbacks, phase in [
(pkg.build_time_test_callbacks, "Build"),
(pkg.install_time_test_callbacks, "Install"),
(getattr(pkg, "build_time_test_callbacks", None), "Build"),
(getattr(pkg, "install_time_test_callbacks", None), "Install"),
]:
color.cprint("")
color.cprint(section_title("Available {0} Phase Test Methods:".format(phase)))

View File

@@ -12,6 +12,7 @@
import os
import re
import sys
from html import escape
import llnl.util.tty as tty
from llnl.util.tty.colify import colify
@@ -21,11 +22,6 @@
import spack.repo
from spack.version import VersionList
if sys.version_info > (3, 1):
from html import escape # novm
else:
from cgi import escape
description = "list and search available packages"
section = "basic"
level = "short"

View File

@@ -3,10 +3,9 @@
#
# SPDX-License-Identifier: (Apache-2.0 OR MIT)
import io
import sys
import six
import llnl.util.tty.colify as colify
import spack.cmd
@@ -29,7 +28,7 @@ def setup_parser(subparser):
def providers(parser, args):
valid_virtuals = sorted(spack.repo.path.provider_index.providers.keys())
buffer = six.StringIO()
buffer = io.StringIO()
isatty = sys.stdout.isatty()
if isatty:
buffer.write("Virtual packages:\n")

View File

@@ -9,6 +9,7 @@
import os
import re
import sys
from itertools import zip_longest
import llnl.util.tty as tty
import llnl.util.tty.color as color
@@ -18,14 +19,6 @@
import spack.paths
from spack.util.executable import which
if sys.version_info < (3, 0):
from itertools import izip_longest # novm
zip_longest = izip_longest
else:
from itertools import zip_longest # novm
description = "runs source code style checks on spack"
section = "developer"
level = "long"
@@ -267,7 +260,7 @@ def run_flake8(flake8_cmd, file_list, args):
"--config=%s" % os.path.join(spack.paths.prefix, ".flake8"),
*chunk,
fail_on_error=False,
output=str
output=str,
)
returncode |= flake8_cmd.returncode
@@ -375,14 +368,6 @@ def run_black(black_cmd, file_list, args):
packed_args = black_args + tuple(chunk)
output = black_cmd(*packed_args, fail_on_error=False, output=str, error=str)
returncode |= black_cmd.returncode
# ignore Python 2.7 deprecation error because we already know it's deprecated.
output = "\n".join(
line
for line in output.split("\n")
if "DEPRECATION: Python 2 support will be removed" not in line
)
rewrite_and_print_output(output, args, pat, replacement)
print_tool_result("black", returncode)
@@ -400,10 +385,6 @@ def validate_toolset(arg_value):
def style(parser, args):
# ensure python version is new enough
if sys.version_info < (3, 6):
tty.die("spack style requires Python 3.6 or later.")
# save initial working directory for relativizing paths later
args.initial_working_dir = os.getcwd()

View File

@@ -2,11 +2,9 @@
# Spack Project Developers. See the top-level COPYRIGHT file for details.
#
# SPDX-License-Identifier: (Apache-2.0 OR MIT)
import io
import sys
import six
import llnl.util.tty as tty
import llnl.util.tty.colify as colify
@@ -20,7 +18,7 @@
def report_tags(category, tags):
buffer = six.StringIO()
buffer = io.StringIO()
isatty = sys.stdout.isatty()
if isatty:
@@ -88,7 +86,7 @@ def tags(parser, args):
return
# Report packages associated with tags
buffer = six.StringIO()
buffer = io.StringIO()
isatty = sys.stdout.isatty()
tags = args.tag if args.tag else available_tags

View File

@@ -11,6 +11,7 @@
import llnl.util.tty as tty
from llnl.util.filesystem import working_dir
import spack
import spack.cmd.common.arguments as arguments
import spack.config
import spack.paths
@@ -24,7 +25,7 @@
# tutorial configuration parameters
tutorial_branch = "releases/v0.18"
tutorial_branch = "releases/v0.19"
tutorial_mirror = "file:///mirror"
tutorial_key = os.path.join(spack.paths.share_path, "keys", "tutorial.pub")

View File

@@ -17,6 +17,7 @@
import spack.package_base
import spack.repo
import spack.store
import spack.traverse as traverse
from spack.database import InstallStatuses
description = "remove installed packages"
@@ -144,11 +145,7 @@ def installed_dependents(specs, env):
active environment, and one from specs to dependent installs outside of
the active environment.
Any of the input specs may appear in both mappings (if there are
dependents both inside and outside the current environment).
If a dependent spec is used both by the active environment and by
an inactive environment, it will only appear in the first mapping.
Every installed dependent spec is listed once.
If there is not current active environment, the first mapping will be
empty.
@@ -158,19 +155,27 @@ def installed_dependents(specs, env):
env_hashes = set(env.all_hashes()) if env else set()
all_specs_in_db = spack.store.db.query()
# Ensure we stop traversal at input specs.
visited = set(s.dag_hash() for s in specs)
for spec in specs:
installed = [x for x in all_specs_in_db if spec in x]
# separate installed dependents into dpts in this environment and
# dpts that are outside this environment
for dpt in installed:
if dpt not in specs:
if dpt.dag_hash() in env_hashes:
active_dpts.setdefault(spec, set()).add(dpt)
else:
outside_dpts.setdefault(spec, set()).add(dpt)
for dpt in traverse.traverse_nodes(
spec.dependents(deptype="all"),
direction="parents",
visited=visited,
deptype="all",
root=True,
key=lambda s: s.dag_hash(),
):
hash = dpt.dag_hash()
# Ensure that all the specs we get are installed
record = spack.store.db.query_local_by_spec_hash(hash)
if record is None or not record.installed:
continue
if hash in env_hashes:
active_dpts.setdefault(spec, set()).add(dpt)
else:
outside_dpts.setdefault(spec, set()).add(dpt)
return active_dpts, outside_dpts
@@ -225,54 +230,21 @@ def _remove_from_env(spec, env):
pass # ignore non-root specs
def do_uninstall(env, specs, force):
"""Uninstalls all the specs in a list.
def do_uninstall(specs, force=False):
# TODO: get rid of the call-sites that use this function,
# so that we don't have to do a dance of list -> set -> list -> set
hashes_to_remove = set(s.dag_hash() for s in specs)
Args:
env (spack.environment.Environment or None): active environment, or ``None``
if there is not one
specs (list): list of specs to be uninstalled
force (bool): force uninstallation (boolean)
"""
packages = []
for item in specs:
try:
# should work if package is known to spack
packages.append(item.package)
except spack.repo.UnknownEntityError:
# The package.py file has gone away -- but still
# want to uninstall.
spack.package_base.PackageBase.uninstall_by_spec(item, force=True)
# A package is ready to be uninstalled when nothing else references it,
# unless we are requested to force uninstall it.
def is_ready(dag_hash):
if force:
return True
_, record = spack.store.db.query_by_spec_hash(dag_hash)
if not record.ref_count:
return True
# If this spec is only used as a build dependency, we can uninstall
return all(
dspec.deptypes == ("build",) or not dspec.parent.installed
for dspec in record.spec.edges_from_dependents()
)
while packages:
ready = [x for x in packages if is_ready(x.spec.dag_hash())]
if not ready:
msg = (
"unexpected error [cannot proceed uninstalling specs with"
" remaining link or run dependents {0}]"
)
msg = msg.format(", ".join(x.name for x in packages))
raise spack.error.SpackError(msg)
packages = [x for x in packages if x not in ready]
for item in ready:
item.do_uninstall(force=force)
for s in traverse.traverse_nodes(
specs,
order="topo",
direction="children",
root=True,
cover="nodes",
deptype="all",
):
if s.dag_hash() in hashes_to_remove:
spack.package_base.PackageBase.uninstall_by_spec(s, force=force)
def get_uninstall_list(args, specs, env):
@@ -414,7 +386,7 @@ def uninstall_specs(args, specs):
confirm_removal(uninstall_list)
# Uninstall everything on the list
do_uninstall(env, uninstall_list, args.force)
do_uninstall(uninstall_list, args.force)
if env:
with env.write_transaction():

View File

@@ -7,6 +7,7 @@
import argparse
import collections
import io
import os.path
import re
import sys
@@ -16,8 +17,6 @@
except ImportError:
pytest = None # type: ignore
from six import StringIO
import llnl.util.filesystem
import llnl.util.tty.color as color
from llnl.util.tty.colify import colify
@@ -126,7 +125,7 @@ def colorize(c, prefix):
old_output = sys.stdout
try:
sys.stdout = output = StringIO()
sys.stdout = output = io.StringIO()
pytest.main(["--collect-only"] + extra_args)
finally:
sys.stdout = old_output

View File

@@ -5,10 +5,9 @@
from __future__ import division, print_function
import urllib.parse
from collections import defaultdict
import six.moves.urllib.parse as urllib_parse
import llnl.util.tty.color as color
from llnl.util import tty
@@ -323,7 +322,7 @@ def add(self, pkg_name, fetcher):
md5_hashes[pkg_name].append(fetcher.url)
# parse out the URL scheme (https/http/ftp/etc.)
urlinfo = urllib_parse.urlparse(fetcher.url)
urlinfo = urllib.parse.urlparse(fetcher.url)
self.schemes[urlinfo.scheme] += 1
if urlinfo.scheme == "http":

View File

@@ -12,8 +12,6 @@
import os
from typing import Dict # novm
import six
import archspec.cpu
import llnl.util.filesystem as fs
@@ -427,7 +425,7 @@ def compiler_from_dict(items):
environment,
extra_rpaths,
enable_implicit_rpaths=implicit_rpaths,
**compiler_flags
**compiler_flags,
)
@@ -677,18 +675,18 @@ def _default(fn_args):
try:
version = callback(path)
if version and six.text_type(version).strip() and version != "unknown":
if version and str(version).strip() and version != "unknown":
value = fn_args._replace(id=compiler_id._replace(version=version))
return value, None
error = "Couldn't get version for compiler {0}".format(path)
except spack.util.executable.ProcessError as e:
error = "Couldn't get version for compiler {0}\n".format(path) + six.text_type(e)
error = "Couldn't get version for compiler {0}\n".format(path) + str(e)
except Exception as e:
# Catching "Exception" here is fine because it just
# means something went wrong running a candidate executable.
error = "Error while executing candidate compiler {0}" "\n{1}: {2}".format(
path, e.__class__.__name__, six.text_type(e)
path, e.__class__.__name__, str(e)
)
return None, error

View File

@@ -10,10 +10,13 @@
from distutils.version import StrictVersion
from typing import Dict, List, Set # novm
import spack.compiler
import spack.operating_systems.windows_os
import spack.platforms
import spack.util.executable
from spack.compiler import Compiler
from spack.error import SpackError
from spack.version import Version
avail_fc_version = set() # type: Set[str]
fc_path = dict() # type: Dict[str, str]
@@ -39,10 +42,10 @@ def get_valid_fortran_pth(comp_ver):
class Msvc(Compiler):
# Subclasses use possible names of C compiler
cc_names = ["cl.exe"]
cc_names = ["cl.exe"] # type: List[str]
# Subclasses use possible names of C++ compiler
cxx_names = ["cl.exe"]
cxx_names = ["cl.exe"] # type: List[str]
# Subclasses use possible names of Fortran 77 compiler
f77_names = ["ifx.exe"] # type: List[str]
@@ -91,45 +94,67 @@ def __init__(self, *args, **kwargs):
@property
def msvc_version(self):
ver = re.search(Msvc.version_regex, self.cc).group(1)
ver = "".join(ver.split(".")[:2])[:-1]
"""This is the VCToolset version *NOT* the actual version of the cl compiler
For CL version, query `Msvc.cl_version`"""
return Version(re.search(Msvc.version_regex, self.cc).group(1))
@property
def short_msvc_version(self):
"""
This is the shorthand VCToolset version of form
MSVC<short-ver> *NOT* the full version, for that see
Msvc.msvc_version
"""
ver = self.msvc_version[:2].joined.string[:3]
return "MSVC" + ver
@property
def cl_version(self):
"""Cl toolset version"""
return spack.compiler.get_compiler_version_output(self.cc)
def setup_custom_environment(self, pkg, env):
"""Set environment variables for MSVC using the
Microsoft-provided script."""
if sys.version_info[:2] > (2, 6):
# Set the build environment variables for spack. Just using
# subprocess.call() doesn't work since that operates in its own
# environment which is destroyed (along with the adjusted variables)
# once the process terminates. So go the long way around: examine
# output, sort into dictionary, use that to make the build
# environment.
out = subprocess.check_output( # novermin
'cmd /u /c "{}" {} && set'.format(self.setvarsfile, "amd64"),
stderr=subprocess.STDOUT,
)
if sys.version_info[0] >= 3:
out = out.decode("utf-16le", errors="replace") # novermin
# Set the build environment variables for spack. Just using
# subprocess.call() doesn't work since that operates in its own
# environment which is destroyed (along with the adjusted variables)
# once the process terminates. So go the long way around: examine
# output, sort into dictionary, use that to make the build
# environment.
int_env = dict(
(key.lower(), value)
for key, _, value in (line.partition("=") for line in out.splitlines())
if key and value
)
# get current platform architecture and format for vcvars argument
arch = spack.platforms.real_host().default.lower()
arch = arch.replace("-", "_")
# vcvars can target specific sdk versions, force it to pick up concretized sdk
# version, if needed by spec
sdk_ver = "" if "win-sdk" not in pkg.spec else pkg.spec["win-sdk"].version.string + ".0"
# provide vcvars with msvc version selected by concretization,
# not whatever it happens to pick up on the system (highest available version)
out = subprocess.check_output( # novermin
'cmd /u /c "{}" {} {} {} && set'.format(
self.setvarsfile, arch, sdk_ver, "-vcvars_ver=%s" % self.msvc_version
),
stderr=subprocess.STDOUT,
)
if sys.version_info[0] >= 3:
out = out.decode("utf-16le", errors="replace") # novermin
if "path" in int_env:
env.set_path("PATH", int_env["path"].split(";"))
env.set_path("INCLUDE", int_env.get("include", "").split(";"))
env.set_path("LIB", int_env.get("lib", "").split(";"))
int_env = dict(
(key.lower(), value)
for key, _, value in (line.partition("=") for line in out.splitlines())
if key and value
)
env.set("CC", self.cc)
env.set("CXX", self.cxx)
env.set("FC", self.fc)
env.set("F77", self.f77)
else:
# Should not this be an exception?
print("Cannot pull msvc compiler information in Python 2.6 or below")
if "path" in int_env:
env.set_path("PATH", int_env["path"].split(";"))
env.set_path("INCLUDE", int_env.get("include", "").split(";"))
env.set_path("LIB", int_env.get("lib", "").split(";"))
env.set("CC", self.cc)
env.set("CXX", self.cxx)
env.set("FC", self.fc)
env.set("F77", self.f77)
@classmethod
def fc_version(cls, fc):

View File

@@ -39,9 +39,7 @@
from typing import List # novm
import ruamel.yaml as yaml
import six
from ruamel.yaml.error import MarkedYAMLError
from six import iteritems
import llnl.util.lang
import llnl.util.tty as tty
@@ -358,7 +356,7 @@ def clear(self):
def _process_dict_keyname_overrides(data):
"""Turn a trailing `:' in a key name into an override attribute."""
result = {}
for sk, sv in iteritems(data):
for sk, sv in data.items():
if sk.endswith(":"):
key = syaml.syaml_str(sk[:-1])
key.override = True
@@ -739,7 +737,7 @@ def override(path_or_scope, value=None):
#: configuration scopes added on the command line
#: set by ``spack.main.main()``.
command_line_scopes = [] # type: List[str]
command_line_scopes: List[str] = []
def _add_platform_scope(cfg, scope_type, name, path):
@@ -973,7 +971,7 @@ def validate(data, schema, filename=None):
line_number = e.instance.lc.line + 1
else:
line_number = None
raise six.raise_from(ConfigFormatError(e, data, filename, line_number), e)
raise ConfigFormatError(e, data, filename, line_number) from e
# return the validated data so that we can access the raw data
# mostly relevant for environments
return test_data
@@ -991,7 +989,7 @@ def read_config_file(filename, schema=None):
if not os.path.exists(filename):
# Ignore nonexistent files.
tty.debug("Skipping nonexistent config path {0}".format(filename))
tty.debug("Skipping nonexistent config path {0}".format(filename), level=3)
return None
elif not os.path.isfile(filename):
@@ -1140,7 +1138,7 @@ def they_are(t):
# come *before* dest in OrderdDicts
dest_keys = [dk for dk in dest.keys() if dk not in source]
for sk, sv in iteritems(source):
for sk, sv in source.items():
# always remove the dest items. Python dicts do not overwrite
# keys on insert, so this ensures that source keys are copied
# into dest along with mark provenance (i.e., file/line info).

View File

@@ -4,11 +4,9 @@
# SPDX-License-Identifier: (Apache-2.0 OR MIT)
import json
import sys
import jsonschema
import jsonschema.exceptions
import six
import llnl.util.tty as tty
@@ -98,7 +96,7 @@ def spec_from_entry(entry):
continue
# Value could be a list (of strings), boolean, or string
if isinstance(value, six.string_types):
if isinstance(value, str):
variant_strs.append("{0}={1}".format(name, value))
else:
try:
@@ -163,21 +161,14 @@ def entries_to_specs(entries):
def read(path, apply_updates):
if sys.version_info >= (3, 0):
decode_exception_type = json.decoder.JSONDecodeError
else:
decode_exception_type = ValueError
decode_exception_type = json.decoder.JSONDecodeError
try:
with open(path, "r") as json_file:
json_data = json.load(json_file)
jsonschema.validate(json_data, manifest_schema)
except (jsonschema.exceptions.ValidationError, decode_exception_type) as e:
raise six.raise_from(
ManifestValidationError("error parsing manifest JSON:", str(e)),
e,
)
raise ManifestValidationError("error parsing manifest JSON:", str(e)) from e
specs = entries_to_specs(json_data["specs"])
tty.debug("{0}: {1} specs read from manifest".format(path, str(len(specs))))

View File

@@ -28,8 +28,6 @@
import time
from typing import Dict # novm
import six
try:
import uuid
@@ -725,6 +723,15 @@ def query_by_spec_hash(self, hash_key, data=None):
return True, db._data[hash_key]
return False, None
def query_local_by_spec_hash(self, hash_key):
"""Get a spec by hash in the local database
Return:
(InstallRecord or None): InstallRecord when installed
locally, otherwise None."""
with self.read_transaction():
return self._data.get(hash_key, None)
def _assign_dependencies(self, hash_key, installs, data):
# Add dependencies from other records in the install DB to
# form a full spec.
@@ -770,10 +777,7 @@ def _read_from_file(self, filename):
with open(filename, "r") as f:
fdata = sjson.load(f)
except Exception as e:
raise six.raise_from(
CorruptDatabaseError("error parsing database:", str(e)),
e,
)
raise CorruptDatabaseError("error parsing database:", str(e)) from e
if fdata is None:
return

View File

@@ -2,11 +2,7 @@
# Spack Project Developers. See the top-level COPYRIGHT file for details.
#
# SPDX-License-Identifier: (Apache-2.0 OR MIT)
"""Data structures that represent Spack's dependency relationships.
"""
from six import string_types
"""Data structures that represent Spack's dependency relationships."""
import spack.spec
#: The types of dependency relationships that Spack understands.
@@ -48,7 +44,7 @@ def canonical_deptype(deptype):
if deptype in ("all", all):
return all_deptypes
elif isinstance(deptype, string_types):
elif isinstance(deptype, str):
if deptype not in all_deptypes:
raise ValueError("Invalid dependency type: %s" % deptype)
return (deptype,)

View File

@@ -14,19 +14,20 @@
detection mechanisms.
"""
import collections
import glob
import itertools
import os
import os.path
import re
import sys
import six
import llnl.util.tty
import spack.config
import spack.operating_systems.windows_os as winOs
import spack.spec
import spack.util.spack_yaml
import spack.util.windows_registry
is_windows = sys.platform == "win32"
#: Information on a package that has been detected
@@ -106,6 +107,19 @@ def _spec_is_valid(spec):
return True
def path_to_dict(search_paths):
"""Return dictionary[fullpath]: basename from list of paths"""
path_to_lib = {}
# Reverse order of search directories so that a lib in the first
# entry overrides later entries
for search_path in reversed(search_paths):
for lib in os.listdir(search_path):
lib_path = os.path.join(search_path, lib)
if llnl.util.filesystem.is_readable_file(lib_path):
path_to_lib[lib_path] = lib
return path_to_lib
def is_executable(file_path):
"""Return True if the path passed as argument is that of an executable"""
return os.path.isfile(file_path) and os.access(file_path, os.X_OK)
@@ -115,7 +129,7 @@ def _convert_to_iterable(single_val_or_multiple):
x = single_val_or_multiple
if x is None:
return []
elif isinstance(x, six.string_types):
elif isinstance(x, str):
return [x]
elif isinstance(x, spack.spec.Spec):
# Specs are iterable, but a single spec should be converted to a list
@@ -141,9 +155,11 @@ def executable_prefix(executable_dir):
assert os.path.isdir(executable_dir)
components = executable_dir.split(os.sep)
if "bin" not in components:
# convert to lower to match Bin, BIN, bin
lowered_components = executable_dir.lower().split(os.sep)
if "bin" not in lowered_components:
return executable_dir
idx = components.index("bin")
idx = lowered_components.index("bin")
return os.sep.join(components[:idx])
@@ -160,11 +176,16 @@ def library_prefix(library_dir):
assert os.path.isdir(library_dir)
components = library_dir.split(os.sep)
if "lib64" in components:
idx = components.index("lib64")
# covert to lowercase to match lib, LIB, Lib, etc.
lowered_components = library_dir.lower().split(os.sep)
if "lib64" in lowered_components:
idx = lowered_components.index("lib64")
return os.sep.join(components[:idx])
elif "lib" in components:
idx = components.index("lib")
elif "lib" in lowered_components:
idx = lowered_components.index("lib")
return os.sep.join(components[:idx])
elif is_windows and "bin" in lowered_components:
idx = lowered_components.index("bin")
return os.sep.join(components[:idx])
else:
return library_dir
@@ -197,10 +218,117 @@ def update_configuration(detected_packages, scope=None, buildable=True):
return all_new_specs
def _windows_drive():
"""Return Windows drive string"""
return os.environ["HOMEDRIVE"]
class WindowsCompilerExternalPaths(object):
@staticmethod
def find_windows_compiler_root_paths():
"""Helper for Windows compiler installation root discovery
At the moment simply returns location of VS install paths from VSWhere
But should be extended to include more information as relevant"""
return list(winOs.WindowsOs.vs_install_paths)
@staticmethod
def find_windows_compiler_cmake_paths():
"""Semi hard-coded search path for cmake bundled with MSVC"""
return [
os.path.join(
path, "Common7", "IDE", "CommonExtensions", "Microsoft", "CMake", "CMake", "bin"
)
for path in WindowsCompilerExternalPaths.find_windows_compiler_root_paths()
]
@staticmethod
def find_windows_compiler_ninja_paths():
"""Semi hard-coded search heuristic for locating ninja bundled with MSVC"""
return [
os.path.join(path, "Common7", "IDE", "CommonExtensions", "Microsoft", "CMake", "Ninja")
for path in WindowsCompilerExternalPaths.find_windows_compiler_root_paths()
]
@staticmethod
def find_windows_compiler_bundled_packages():
"""Return all MSVC compiler bundled packages"""
return (
WindowsCompilerExternalPaths.find_windows_compiler_cmake_paths()
+ WindowsCompilerExternalPaths.find_windows_compiler_ninja_paths()
)
class WindowsKitExternalPaths(object):
if is_windows:
plat_major_ver = str(winOs.windows_version()[0])
@staticmethod
def find_windows_kit_roots():
"""Return Windows kit root, typically %programfiles%\\Windows Kits\\10|11\\"""
if not is_windows:
return []
program_files = os.environ["PROGRAMFILES(x86)"]
kit_base = os.path.join(
program_files, "Windows Kits", WindowsKitExternalPaths.plat_major_ver
)
return kit_base
@staticmethod
def find_windows_kit_bin_paths(kit_base=None):
"""Returns Windows kit bin directory per version"""
kit_base = WindowsKitExternalPaths.find_windows_kit_roots() if not kit_base else kit_base
kit_bin = os.path.join(kit_base, "bin")
return glob.glob(os.path.join(kit_bin, "[0-9]*", "*\\"))
@staticmethod
def find_windows_kit_lib_paths(kit_base=None):
"""Returns Windows kit lib directory per version"""
kit_base = WindowsKitExternalPaths.find_windows_kit_roots() if not kit_base else kit_base
kit_lib = os.path.join(kit_base, "Lib")
return glob.glob(os.path.join(kit_lib, "[0-9]*", "*", "*\\"))
@staticmethod
def find_windows_driver_development_kit_paths():
"""Provides a list of all installation paths
for the WDK by version and architecture
"""
wdk_content_root = os.getenv("WDKContentRoot")
return WindowsKitExternalPaths.find_windows_kit_lib_paths(wdk_content_root)
@staticmethod
def find_windows_kit_reg_installed_roots_paths():
reg = spack.util.windows_registry.WindowsRegistryView(
"SOFTWARE\\Microsoft\\Windows Kits\\Installed Roots",
root_key=spack.util.windows_registry.HKEY.HKEY_LOCAL_MACHINE,
)
if not reg:
# couldn't find key, return empty list
return []
return WindowsKitExternalPaths.find_windows_kit_lib_paths(
reg.get_value("KitsRoot%s" % WindowsKitExternalPaths.plat_major_ver).value
)
@staticmethod
def find_windows_kit_reg_sdk_paths():
reg = spack.util.windows_registry.WindowsRegistryView(
"SOFTWARE\\WOW6432Node\\Microsoft\\Microsoft SDKs\\Windows\\v%s.0"
% WindowsKitExternalPaths.plat_major_ver,
root_key=spack.util.windows_registry.HKEY.HKEY_LOCAL_MACHINE,
)
if not reg:
# couldn't find key, return empty list
return []
return WindowsKitExternalPaths.find_windows_kit_lib_paths(
reg.get_value("InstallationFolder").value
)
def find_win32_additional_install_paths():
"""Not all programs on Windows live on the PATH
Return a list of other potential install locations.
"""
drive_letter = _windows_drive()
windows_search_ext = []
cuda_re = r"CUDA_PATH[a-zA-Z1-9_]*"
# The list below should be expanded with other
@@ -213,7 +341,7 @@ def find_win32_additional_install_paths():
# to interact with Windows
# Add search path for default Chocolatey (https://github.com/chocolatey/choco)
# install directory
windows_search_ext.append("C:\\ProgramData\\chocolatey\\bin")
windows_search_ext.append("%s\\ProgramData\\chocolatey\\bin" % drive_letter)
# Add search path for NuGet package manager default install location
windows_search_ext.append(os.path.join(user, ".nuget", "packages"))
windows_search_ext.extend(
@@ -235,9 +363,32 @@ def compute_windows_program_path_for_package(pkg):
return []
# note windows paths are fine here as this method should only ever be invoked
# to interact with Windows
program_files = "C:\\Program Files{}\\{}"
program_files = "{}\\Program Files{}\\{}"
drive_letter = _windows_drive()
return [
program_files.format(arch, name)
program_files.format(drive_letter, arch, name)
for arch, name in itertools.product(("", " (x86)"), (pkg.name, pkg.name.capitalize()))
]
def compute_windows_user_path_for_package(pkg):
"""Given a package attempt to compute its user scoped
install location, return list of potential locations based
on common heuristics. For more info on Windows user specific
installs see:
https://learn.microsoft.com/en-us/dotnet/api/system.environment.specialfolder?view=netframework-4.8"""
if not is_windows:
return []
# Current user directory
user = os.environ["USERPROFILE"]
app_data = "AppData"
app_data_locations = ["Local", "Roaming"]
user_appdata_install_stubs = [os.path.join(app_data, x) for x in app_data_locations]
return [
os.path.join(user, app_data, name)
for app_data, name in list(
itertools.product(user_appdata_install_stubs, (pkg.name, pkg.name.capitalize()))
)
] + [os.path.join(user, name) for name in (pkg.name, pkg.name.capitalize())]

View File

@@ -15,21 +15,35 @@
import llnl.util.filesystem
import llnl.util.tty
import spack.operating_systems.windows_os as winOs
import spack.util.environment
import spack.util.ld_so_conf
from .common import (
from .common import ( # find_windows_compiler_bundled_packages,
DetectedPackage,
WindowsCompilerExternalPaths,
WindowsKitExternalPaths,
_convert_to_iterable,
compute_windows_program_path_for_package,
compute_windows_user_path_for_package,
executable_prefix,
find_win32_additional_install_paths,
is_executable,
library_prefix,
path_to_dict,
)
is_windows = sys.platform == "win32"
def executables_in_path(path_hints=None):
def common_windows_package_paths():
paths = WindowsCompilerExternalPaths.find_windows_compiler_bundled_packages()
paths.extend(find_win32_additional_install_paths())
paths.extend(WindowsKitExternalPaths.find_windows_kit_bin_paths())
paths.extend(WindowsKitExternalPaths.find_windows_kit_reg_installed_roots_paths())
paths.extend(WindowsKitExternalPaths.find_windows_kit_reg_sdk_paths())
return paths
def executables_in_path(path_hints):
"""Get the paths of all executables available from the current PATH.
For convenience, this is constructed as a dictionary where the keys are
@@ -43,41 +57,16 @@ def executables_in_path(path_hints=None):
path_hints (list): list of paths to be searched. If None the list will be
constructed based on the PATH environment variable.
"""
# If we're on a Windows box, run vswhere,
# steal the installationPath using windows_os.py logic,
# construct paths to CMake and Ninja, add to PATH
path_hints = path_hints or spack.util.environment.get_path("PATH")
if sys.platform == "win32":
msvc_paths = list(winOs.WindowsOs.vs_install_paths)
msvc_cmake_paths = [
os.path.join(
path, "Common7", "IDE", "CommonExtensions", "Microsoft", "CMake", "CMake", "bin"
)
for path in msvc_paths
]
path_hints = msvc_cmake_paths + path_hints
msvc_ninja_paths = [
os.path.join(path, "Common7", "IDE", "CommonExtensions", "Microsoft", "CMake", "Ninja")
for path in msvc_paths
]
path_hints = msvc_ninja_paths + path_hints
path_hints.extend(find_win32_additional_install_paths())
if is_windows:
path_hints.extend(common_windows_package_paths())
search_paths = llnl.util.filesystem.search_paths_for_executables(*path_hints)
path_to_exe = {}
# Reverse order of search directories so that an exe in the first PATH
# entry overrides later entries
for search_path in reversed(search_paths):
for exe in os.listdir(search_path):
exe_path = os.path.join(search_path, exe)
if is_executable(exe_path):
path_to_exe[exe_path] = exe
return path_to_exe
return path_to_dict(search_paths)
def libraries_in_ld_library_path(path_hints=None):
def libraries_in_ld_and_system_library_path(path_hints=None):
"""Get the paths of all libraries available from LD_LIBRARY_PATH,
LIBRARY_PATH, DYLD_LIBRARY_PATH, and DYLD_FALLBACK_LIBRARY_PATH.
LIBRARY_PATH, DYLD_LIBRARY_PATH, DYLD_FALLBACK_LIBRARY_PATH, and
standard system library paths.
For convenience, this is constructed as a dictionary where the keys are
the library paths and the values are the names of the libraries
@@ -90,26 +79,33 @@ def libraries_in_ld_library_path(path_hints=None):
path_hints (list): list of paths to be searched. If None the list will be
constructed based on the set of LD_LIBRARY_PATH, LIBRARY_PATH,
DYLD_LIBRARY_PATH, and DYLD_FALLBACK_LIBRARY_PATH environment
variables.
variables as well as the standard system library paths.
"""
path_hints = path_hints or spack.util.environment.get_path(
"LIBRARY_PATH"
) + spack.util.environment.get_path("LD_LIBRARY_PATH") + spack.util.environment.get_path(
"DYLD_LIBRARY_PATH"
) + spack.util.environment.get_path(
"DYLD_FALLBACK_LIBRARY_PATH"
path_hints = (
path_hints
or spack.util.environment.get_path("LD_LIBRARY_PATH")
+ spack.util.environment.get_path("DYLD_LIBRARY_PATH")
+ spack.util.environment.get_path("DYLD_FALLBACK_LIBRARY_PATH")
+ spack.util.ld_so_conf.host_dynamic_linker_search_paths()
)
search_paths = llnl.util.filesystem.search_paths_for_libraries(*path_hints)
return path_to_dict(search_paths)
path_to_lib = {}
# Reverse order of search directories so that a lib in the first
# LD_LIBRARY_PATH entry overrides later entries
for search_path in reversed(search_paths):
for lib in os.listdir(search_path):
lib_path = os.path.join(search_path, lib)
if llnl.util.filesystem.is_readable_file(lib_path):
path_to_lib[lib_path] = lib
return path_to_lib
def libraries_in_windows_paths(path_hints):
path_hints.extend(spack.util.environment.get_path("PATH"))
search_paths = llnl.util.filesystem.search_paths_for_libraries(*path_hints)
# on Windows, some libraries (.dlls) are found in the bin directory or sometimes
# at the search root. Add both of those options to the search scheme
search_paths.extend(llnl.util.filesystem.search_paths_for_executables(*path_hints))
search_paths.extend(WindowsKitExternalPaths.find_windows_kit_lib_paths())
search_paths.extend(WindowsKitExternalPaths.find_windows_kit_bin_paths())
search_paths.extend(WindowsKitExternalPaths.find_windows_kit_reg_installed_roots_paths())
search_paths.extend(WindowsKitExternalPaths.find_windows_kit_reg_sdk_paths())
# SDK and WGL should be handled by above, however on occasion the WDK is in an atypical
# location, so we handle that case specifically.
search_paths.extend(WindowsKitExternalPaths.find_windows_driver_development_kit_paths())
return path_to_dict(search_paths)
def _group_by_prefix(paths):
@@ -129,19 +125,33 @@ def by_library(packages_to_check, path_hints=None):
# Other libraries could use the strings function to extract it as described
# in https://unix.stackexchange.com/questions/58846/viewing-linux-library-executable-version-info
"""Return the list of packages that have been detected on the system,
searching by LD_LIBRARY_PATH.
searching by LD_LIBRARY_PATH, LIBRARY_PATH, DYLD_LIBRARY_PATH,
DYLD_FALLBACK_LIBRARY_PATH, and standard system library paths.
Args:
packages_to_check (list): list of packages to be detected
path_hints (list): list of paths to be searched. If None the list will be
constructed based on the LD_LIBRARY_PATH environment variable.
constructed based on the LD_LIBRARY_PATH, LIBRARY_PATH,
DYLD_LIBRARY_PATH, DYLD_FALLBACK_LIBRARY_PATH environment variables
and standard system library paths.
"""
path_to_lib_name = libraries_in_ld_library_path(path_hints=path_hints)
# If no path hints from command line, intialize to empty list so
# we can add default hints on a per package basis
path_hints = [] if path_hints is None else path_hints
lib_pattern_to_pkgs = collections.defaultdict(list)
for pkg in packages_to_check:
if hasattr(pkg, "libraries"):
for lib in pkg.libraries:
lib_pattern_to_pkgs[lib].append(pkg)
path_hints.extend(compute_windows_user_path_for_package(pkg))
path_hints.extend(compute_windows_program_path_for_package(pkg))
path_to_lib_name = (
libraries_in_ld_and_system_library_path(path_hints=path_hints)
if not is_windows
else libraries_in_windows_paths(path_hints)
)
pkg_to_found_libs = collections.defaultdict(set)
for lib_pattern, pkgs in lib_pattern_to_pkgs.items():
@@ -226,13 +236,14 @@ def by_executable(packages_to_check, path_hints=None):
path_hints (list): list of paths to be searched. If None the list will be
constructed based on the PATH environment variable.
"""
path_hints = [] if path_hints is None else path_hints
path_hints = spack.util.environment.get_path("PATH") if path_hints is None else path_hints
exe_pattern_to_pkgs = collections.defaultdict(list)
for pkg in packages_to_check:
if hasattr(pkg, "executables"):
for exe in pkg.platform_executables():
exe_pattern_to_pkgs[exe].append(pkg)
# Add Windows specific, package related paths to the search paths
path_hints.extend(compute_windows_user_path_for_package(pkg))
path_hints.extend(compute_windows_program_path_for_package(pkg))
path_to_exe_name = executables_in_path(path_hints=path_hints)

View File

@@ -28,16 +28,14 @@ class OpenMpi(Package):
* ``version``
"""
import collections.abc
import functools
import os.path
import re
from typing import List, Set # novm
import six
import llnl.util.lang
import llnl.util.tty.color
from llnl.util.compat import Sequence
import spack.error
import spack.patch
@@ -234,10 +232,10 @@ class Foo(Package):
"""
global directive_names
if isinstance(dicts, six.string_types):
if isinstance(dicts, str):
dicts = (dicts,)
if not isinstance(dicts, Sequence):
if not isinstance(dicts, collections.abc.Sequence):
message = "dicts arg must be list, tuple, or string. Found {0}"
raise TypeError(message.format(type(dicts)))
@@ -300,7 +298,7 @@ def remove_directives(arg):
# ...so if it is not a sequence make it so
values = result
if not isinstance(values, Sequence):
if not isinstance(values, collections.abc.Sequence):
values = (values,)
DirectiveMeta._directives_to_be_executed.extend(values)
@@ -391,7 +389,7 @@ def _depends_on(pkg, spec, when=None, type=default_deptype, patches=None):
patches = [patches]
# auto-call patch() directive on any strings in patch list
patches = [patch(p) if isinstance(p, six.string_types) else p for p in patches]
patches = [patch(p) if isinstance(p, str) else p for p in patches]
assert all(callable(p) for p in patches)
# this is where we actually add the dependency to this package

View File

@@ -12,8 +12,6 @@
import sys
from contextlib import contextmanager
import six
import llnl.util.filesystem as fs
import llnl.util.tty as tty
@@ -363,12 +361,12 @@ def remove_install_directory(self, spec, deprecated=False):
os.unlink(path)
os.remove(metapath)
except OSError as e:
raise six.raise_from(RemoveFailedError(spec, path, e), e)
raise RemoveFailedError(spec, path, e) from e
elif os.path.exists(path):
try:
shutil.rmtree(path, **kwargs)
except OSError as e:
raise six.raise_from(RemoveFailedError(spec, path, e), e)
raise RemoveFailedError(spec, path, e) from e
path = os.path.dirname(path)
while path != self.root:

View File

@@ -13,7 +13,6 @@
import time
import ruamel.yaml as yaml
import six
import llnl.util.filesystem as fs
import llnl.util.tty as tty
@@ -679,7 +678,7 @@ def __init__(self, path, init_file=None, with_view=None, keep_relative=False):
self.views = {}
elif with_view is True:
self.views = {default_view_name: ViewDescriptor(self.path, self.view_path_default)}
elif isinstance(with_view, six.string_types):
elif isinstance(with_view, str):
self.views = {default_view_name: ViewDescriptor(self.path, with_view)}
# If with_view is None, then defer to the view settings determined by
# the manifest file
@@ -776,7 +775,7 @@ def _read_manifest(self, f, raw_yaml=None):
# enable_view can be boolean, string, or None
if enable_view is True or enable_view is None:
self.views = {default_view_name: ViewDescriptor(self.path, self.view_path_default)}
elif isinstance(enable_view, six.string_types):
elif isinstance(enable_view, str):
self.views = {default_view_name: ViewDescriptor(self.path, enable_view)}
elif enable_view:
path = self.path
@@ -2096,16 +2095,14 @@ def _update_and_write_manifest(self, raw_yaml_dict, yaml_dict):
ayl[name][:] = [
s
for s in ayl.setdefault(name, [])
if (not isinstance(s, six.string_types))
or s.startswith("$")
or Spec(s) in speclist.specs
if (not isinstance(s, str)) or s.startswith("$") or Spec(s) in speclist.specs
]
# Put the new specs into the first active list from the yaml
new_specs = [
entry
for entry in speclist.yaml_list
if isinstance(entry, six.string_types)
if isinstance(entry, str)
and not any(entry in ayl[name] for ayl in active_yaml_lists)
]
list_for_new_specs = active_yaml_lists[0].setdefault(name, [])
@@ -2181,7 +2178,7 @@ def yaml_equivalent(first, second):
elif isinstance(first, list):
return isinstance(second, list) and _equiv_list(first, second)
else: # it's a string
return isinstance(second, six.string_types) and first == second
return isinstance(second, str) and first == second
def _equiv_list(first, second):

View File

@@ -29,11 +29,9 @@
import re
import shutil
import sys
import urllib.parse
from typing import List, Optional # novm
import six
import six.moves.urllib.parse as urllib_parse
import llnl.util
import llnl.util.filesystem as fs
import llnl.util.tty as tty
@@ -108,12 +106,12 @@ class FetchStrategy(object):
#: The URL attribute must be specified either at the package class
#: level, or as a keyword argument to ``version()``. It is used to
#: distinguish fetchers for different versions in the package DSL.
url_attr = None # type: Optional[str]
url_attr: Optional[str] = None
#: Optional attributes can be used to distinguish fetchers when :
#: classes have multiple ``url_attrs`` at the top-level.
# optional attributes in version() args.
optional_attrs = [] # type: List[str]
optional_attrs: List[str] = []
def __init__(self, **kwargs):
# The stage is initialized late, so that fetch strategies can be
@@ -322,7 +320,7 @@ def candidate_urls(self):
# This must be skipped on Windows due to URL encoding
# of ':' characters on filepaths on Windows
if sys.platform != "win32" and url.startswith("file://"):
path = urllib_parse.quote(url[len("file://") :])
path = urllib.parse.quote(url[len("file://") :])
url = "file://" + path
urls.append(url)
@@ -337,7 +335,7 @@ def fetch(self):
url = None
errors = []
for url in self.candidate_urls:
if not web_util.url_exists(url, self.curl):
if not web_util.url_exists(url):
tty.debug("URL does not exist: " + url)
continue
@@ -620,7 +618,7 @@ def archive(self, destination, **kwargs):
patterns = kwargs.get("exclude", None)
if patterns is not None:
if isinstance(patterns, six.string_types):
if isinstance(patterns, str):
patterns = [patterns]
for p in patterns:
tar.add_default_arg("--exclude=%s" % p)
@@ -1607,7 +1605,7 @@ def from_url_scheme(url, *args, **kwargs):
in the given url."""
url = kwargs.get("url", url)
parsed_url = urllib_parse.urlparse(url, scheme="file")
parsed_url = urllib.parse.urlparse(url, scheme="file")
scheme_mapping = kwargs.get("scheme_mapping") or {
"file": "url",

View File

@@ -12,7 +12,6 @@
import sys
from llnl.util import tty
from llnl.util.compat import filter, map, zip
from llnl.util.filesystem import (
mkdirp,
remove_dead_links,
@@ -493,9 +492,14 @@ def get_projection_for_spec(self, spec):
Relies on the ordering of projections to avoid ambiguity.
"""
spec = spack.spec.Spec(spec)
proj = spack.projections.get_projection(self.projections, spec)
locator_spec = spec
if spec.package.extendee_spec:
locator_spec = spec.package.extendee_spec
proj = spack.projections.get_projection(self.projections, locator_spec)
if proj:
return os.path.join(self._root, spec.format(proj))
return os.path.join(self._root, locator_spec.format(proj))
return self._root
def get_all_specs(self):
@@ -743,6 +747,10 @@ def get_projection_for_spec(self, spec):
Relies on the ordering of projections to avoid ambiguity.
"""
spec = spack.spec.Spec(spec)
if spec.package.extendee_spec:
spec = spec.package.extendee_spec
proj = spack.projections.get_projection(self.projections, spec)
if proj:
return os.path.join(self._root, spec.format(proj))

View File

@@ -2,8 +2,7 @@
# Spack Project Developers. See the top-level COPYRIGHT file for details.
#
# SPDX-License-Identifier: (Apache-2.0 OR MIT)
import six.moves.urllib.response as urllib_response
import urllib.response
import spack.util.url as url_util
import spack.util.web as web_util
@@ -21,4 +20,4 @@ def gcs_open(req, *args, **kwargs):
stream = gcsblob.get_blob_byte_stream()
headers = gcsblob.get_blob_headers()
return urllib_response.addinfourl(stream, headers, url)
return urllib.response.addinfourl(stream, headers, url)

View File

@@ -7,9 +7,6 @@
import os
import re
import shutil
import sys
import six
import llnl.util.filesystem as fs
import llnl.util.tty as tty
@@ -163,8 +160,7 @@ def content_hash(self):
json_text = sjson.dump(self.to_dict())
sha = hashlib.sha1(json_text.encode("utf-8"))
b32_hash = base64.b32encode(sha.digest()).lower()
if sys.version_info[0] >= 3:
b32_hash = b32_hash.decode("utf-8")
b32_hash = b32_hash.decode("utf-8")
self._hash = b32_hash
return self._hash
@@ -436,10 +432,7 @@ def from_file(filename):
test_suite._hash = content_hash
return test_suite
except Exception as e:
raise six.raise_from(
sjson.SpackJSONError("error parsing JSON TestSuite:", str(e)),
e,
)
raise sjson.SpackJSONError("error parsing JSON TestSuite:", str(e)) from e
def _add_msg_to_file(filename, msg):

View File

@@ -2,7 +2,6 @@
# Spack Project Developers. See the top-level COPYRIGHT file for details.
#
# SPDX-License-Identifier: (Apache-2.0 OR MIT)
"""
This module encapsulates package installation functionality.
@@ -30,6 +29,7 @@
import copy
import glob
import heapq
import io
import itertools
import os
import shutil
@@ -37,8 +37,6 @@
import time
from collections import defaultdict
import six
import llnl.util.filesystem as fs
import llnl.util.lock as lk
import llnl.util.tty as tty
@@ -56,9 +54,9 @@
import spack.store
import spack.util.executable
import spack.util.path
import spack.util.timer as timer
from spack.util.environment import EnvironmentModifications, dump_environment
from spack.util.executable import which
from spack.util.timer import Timer
#: Counter to support unique spec sequencing that is used to ensure packages
#: with the same priority are (initially) processed in the order in which they
@@ -281,11 +279,10 @@ def _print_installed_pkg(message):
print(colorize("@*g{[+]} ") + spack.util.path.debug_padded_filter(message))
def _print_timer(pre, pkg_id, fetch, build, total):
tty.msg(
"{0} Successfully installed {1}".format(pre, pkg_id),
"Fetch: {0}. Build: {1}. Total: {2}.".format(_hms(fetch), _hms(build), _hms(total)),
)
def _print_timer(pre, pkg_id, timer):
phases = ["{}: {}.".format(p.capitalize(), _hms(timer.duration(p))) for p in timer.phases]
phases.append("Total: {}".format(_hms(timer.duration())))
tty.msg("{0} Successfully installed {1}".format(pre, pkg_id), " ".join(phases))
def _install_from_cache(pkg, cache_only, explicit, unsigned=False):
@@ -304,9 +301,9 @@ def _install_from_cache(pkg, cache_only, explicit, unsigned=False):
bool: ``True`` if the package was extract from binary cache,
``False`` otherwise
"""
timer = Timer()
t = timer.Timer()
installed_from_cache = _try_install_from_binary_cache(
pkg, explicit, unsigned=unsigned, timer=timer
pkg, explicit, unsigned=unsigned, timer=t
)
pkg_id = package_id(pkg)
if not installed_from_cache:
@@ -316,15 +313,9 @@ def _install_from_cache(pkg, cache_only, explicit, unsigned=False):
tty.msg("{0}: installing from source".format(pre))
return False
timer.stop()
t.stop()
tty.debug("Successfully extracted {0} from binary cache".format(pkg_id))
_print_timer(
pre=_log_prefix(pkg.name),
pkg_id=pkg_id,
fetch=timer.phases.get("search", 0) + timer.phases.get("fetch", 0),
build=timer.phases.get("install", 0),
total=timer.total,
)
_print_timer(pre=_log_prefix(pkg.name), pkg_id=pkg_id, timer=t)
_print_installed_pkg(pkg.spec.prefix)
spack.hooks.post_install(pkg.spec)
return True
@@ -372,7 +363,7 @@ def _process_external_package(pkg, explicit):
def _process_binary_cache_tarball(
pkg, binary_spec, explicit, unsigned, mirrors_for_spec=None, timer=None
pkg, binary_spec, explicit, unsigned, mirrors_for_spec=None, timer=timer.NULL_TIMER
):
"""
Process the binary cache tarball.
@@ -391,11 +382,11 @@ def _process_binary_cache_tarball(
bool: ``True`` if the package was extracted from binary cache,
else ``False``
"""
timer.start("fetch")
download_result = binary_distribution.download_tarball(
binary_spec, unsigned, mirrors_for_spec=mirrors_for_spec
)
if timer:
timer.phase("fetch")
timer.stop("fetch")
# see #10063 : install from source if tarball doesn't exist
if download_result is None:
tty.msg("{0} exists in binary cache but with different hash".format(pkg.name))
@@ -405,6 +396,7 @@ def _process_binary_cache_tarball(
tty.msg("Extracting {0} from binary cache".format(pkg_id))
# don't print long padded paths while extracting/relocating binaries
timer.start("install")
with spack.util.path.filter_padding():
binary_distribution.extract_tarball(
binary_spec, download_result, allow_root=False, unsigned=unsigned, force=False
@@ -412,12 +404,11 @@ def _process_binary_cache_tarball(
pkg.installed_from_binary_cache = True
spack.store.db.add(pkg.spec, spack.store.layout, explicit=explicit)
if timer:
timer.phase("install")
timer.stop("install")
return True
def _try_install_from_binary_cache(pkg, explicit, unsigned=False, timer=None):
def _try_install_from_binary_cache(pkg, explicit, unsigned=False, timer=timer.NULL_TIMER):
"""
Try to extract the package from binary cache.
@@ -430,10 +421,10 @@ def _try_install_from_binary_cache(pkg, explicit, unsigned=False, timer=None):
"""
pkg_id = package_id(pkg)
tty.debug("Searching for binary cache of {0}".format(pkg_id))
matches = binary_distribution.get_mirrors_for_spec(pkg.spec)
if timer:
timer.phase("search")
timer.start("search")
matches = binary_distribution.get_mirrors_for_spec(pkg.spec)
timer.stop("search")
if not matches:
return False
@@ -594,7 +585,7 @@ def log(pkg):
# Finally, archive files that are specific to each package
with fs.working_dir(pkg.stage.path):
errors = six.StringIO()
errors = io.StringIO()
target_dir = os.path.join(spack.store.layout.metadata_path(pkg.spec), "archived-files")
for glob_expr in pkg.builder.archive_files:
@@ -1906,7 +1897,7 @@ def __init__(self, pkg, install_args):
self.env_mods = install_args.get("env_modifications", EnvironmentModifications())
# timer for build phases
self.timer = Timer()
self.timer = timer.Timer()
# If we are using a padded path, filter the output to compress padded paths
# The real log still has full-length paths.
@@ -1920,12 +1911,16 @@ def __init__(self, pkg, install_args):
def run(self):
"""Main entry point from ``build_process`` to kick off install in child."""
self.timer.start("stage")
if not self.fake:
if not self.skip_patch:
self.pkg.do_patch()
else:
self.pkg.do_stage()
self.timer.stop("stage")
tty.debug(
"{0} Building {1} [{2}]".format(self.pre, self.pkg_id, self.pkg.build_system_class)
)
@@ -1960,9 +1955,7 @@ def run(self):
_print_timer(
pre=self.pre,
pkg_id=self.pkg_id,
fetch=self.pkg._fetch_time,
build=self.timer.total - self.pkg._fetch_time,
total=self.timer.total,
timer=self.timer,
)
_print_installed_pkg(self.pkg.prefix)
@@ -2035,6 +2028,7 @@ def _real_install(self):
)
with log_contextmanager as logger:
# Redirect stdout and stderr to daemon pipe
with logger.force_echo():
inner_debug_level = tty.debug_level()
tty.set_debug(debug_level)
@@ -2042,12 +2036,11 @@ def _real_install(self):
tty.msg(msg.format(self.pre, phase_fn.name))
tty.set_debug(inner_debug_level)
# Redirect stdout and stderr to daemon pipe
self.timer.phase(phase_fn.name)
# Catch any errors to report to logging
self.timer.start(phase_fn.name)
phase_fn.execute()
spack.hooks.on_phase_success(pkg, phase_fn.name, log_file)
self.timer.stop(phase_fn.name)
except BaseException:
combine_phase_logs(pkg.phase_log_files, pkg.log_path)

View File

@@ -12,6 +12,7 @@
import argparse
import inspect
import io
import operator
import os
import os.path
@@ -23,8 +24,6 @@
import traceback
import warnings
from six import StringIO
import archspec.cpu
import llnl.util.lang
@@ -320,9 +319,9 @@ def add_subparsers(self, **kwargs):
kwargs.setdefault("required", True)
sp = super(SpackArgumentParser, self).add_subparsers(**kwargs)
# This monkey patching is needed for Python 3.5 and 3.6, which support
# This monkey patching is needed for Python 3.6, which supports
# having a required subparser but don't expose the API used above
if sys.version_info[:2] == (3, 5) or sys.version_info[:2] == (3, 6):
if sys.version_info[:2] == (3, 6):
sp.required = True
old_add_parser = sp.add_parser
@@ -388,7 +387,7 @@ def make_argument_parser(**kwargs):
"A flexible package manager that supports multiple versions,\n"
"configurations, platforms, and compilers."
),
**kwargs
**kwargs,
)
# stat names in groups of 7, for nice wrapping.
@@ -560,12 +559,6 @@ def setup_main_options(args):
# Assign a custom function to show warnings
warnings.showwarning = send_warning_to_tty
if sys.version_info[:2] == (2, 7):
warnings.warn(
"Python 2.7 support is deprecated and will be removed in Spack v0.20.\n"
" Please move to Python 3.6 or higher."
)
# Set up environment based on args.
tty.set_verbose(args.verbose)
tty.set_debug(args.debug)
@@ -706,7 +699,7 @@ def __call__(self, *argv, **kwargs):
prepend + [self.command_name] + list(argv)
)
out = StringIO()
out = io.StringIO()
try:
with log_output(out):
self.returncode = _invoke_command(self.command, self.parser, args, unknown)
@@ -1015,10 +1008,7 @@ def main(argv=None):
raise
sys.stderr.write("\n")
tty.error("Keyboard interrupt.")
if sys.version_info >= (3, 5):
return signal.SIGINT.value
else:
return signal.SIGINT
return signal.SIGINT.value
except SystemExit as e:
if spack.config.get("config:debug") or SHOW_BACKTRACE:

View File

@@ -11,6 +11,7 @@
to download packages directly from a mirror (e.g., on an intranet).
"""
import collections
import collections.abc
import operator
import os
import os.path
@@ -18,10 +19,8 @@
import traceback
import ruamel.yaml.error as yaml_error
import six
import llnl.util.tty as tty
from llnl.util.compat import Mapping
from llnl.util.filesystem import mkdirp
import spack.config
@@ -37,7 +36,7 @@
def _is_string(url):
return isinstance(url, six.string_types)
return isinstance(url, str)
def _display_mirror_entry(size, name, url, type_=None):
@@ -78,10 +77,7 @@ def from_yaml(stream, name=None):
data = syaml.load(stream)
return Mirror.from_dict(data, name)
except yaml_error.MarkedYAMLError as e:
raise six.raise_from(
syaml.SpackYAMLError("error parsing YAML mirror:", str(e)),
e,
)
raise syaml.SpackYAMLError("error parsing YAML mirror:", str(e)) from e
@staticmethod
def from_json(stream, name=None):
@@ -89,10 +85,7 @@ def from_json(stream, name=None):
d = sjson.load(stream)
return Mirror.from_dict(d, name)
except Exception as e:
raise six.raise_from(
sjson.SpackJSONError("error parsing JSON mirror:", str(e)),
e,
)
raise sjson.SpackJSONError("error parsing JSON mirror:", str(e)) from e
def to_dict(self):
if self._push_url is None:
@@ -102,7 +95,7 @@ def to_dict(self):
@staticmethod
def from_dict(d, name=None):
if isinstance(d, six.string_types):
if isinstance(d, str):
return Mirror(d, name=name)
else:
return Mirror(d["fetch"], d["push"], name=name)
@@ -228,7 +221,7 @@ def _normalize(self):
self._push_url = None
class MirrorCollection(Mapping):
class MirrorCollection(collections.abc.Mapping):
"""A mapping of mirror names to mirrors."""
def __init__(self, mirrors=None, scope=None):
@@ -257,10 +250,7 @@ def from_yaml(stream, name=None):
data = syaml.load(stream)
return MirrorCollection(data)
except yaml_error.MarkedYAMLError as e:
raise six.raise_from(
syaml.SpackYAMLError("error parsing YAML mirror collection:", str(e)),
e,
)
raise syaml.SpackYAMLError("error parsing YAML mirror collection:", str(e)) from e
@staticmethod
def from_json(stream, name=None):
@@ -268,10 +258,7 @@ def from_json(stream, name=None):
d = sjson.load(stream)
return MirrorCollection(d)
except Exception as e:
raise six.raise_from(
sjson.SpackJSONError("error parsing JSON mirror collection:", str(e)),
e,
)
raise sjson.SpackJSONError("error parsing JSON mirror collection:", str(e)) from e
def to_dict(self, recursive=False):
return syaml_dict(

View File

@@ -7,13 +7,6 @@
package.
"""
import os
import sys
from typing import Callable, DefaultDict, List # novm
if sys.version_info >= (3, 5):
CallbackDict = DefaultDict[str, List[Callable]]
else:
CallbackDict = None
import llnl.util.filesystem

View File

@@ -1,4 +1,4 @@
# Copyright 2013-2021 Lawrence Livermore National Security, LLC and other
# Copyright 2013-2022 Lawrence Livermore National Security, LLC and other
# Spack Project Developers. See the top-level COPYRIGHT file for details.
#
# SPDX-License-Identifier: (Apache-2.0 OR MIT)
@@ -7,7 +7,6 @@
import os
import platform
import subprocess
import sys
from spack.error import SpackError
from spack.version import Version
@@ -16,8 +15,12 @@
def windows_version():
"""temporary workaround to return a Windows version as a Version object"""
return Version(platform.release())
"""Windows version as a Version object"""
# include the build number as this provides important information
# for low lever packages and components like the SDK and WDK
# The build number is the version component that would otherwise
# be the patch version in sematic versioning, i.e. z of x.y.z
return Version(platform.version())
class WindowsOs(OperatingSystem):
@@ -34,9 +37,7 @@ class WindowsOs(OperatingSystem):
root = os.environ.get("ProgramFiles(x86)") or os.environ.get("ProgramFiles")
if root:
try:
extra_args = {}
if sys.version_info[:3] >= (3, 6, 0):
extra_args = {"encoding": "mbcs", "errors": "strict"}
extra_args = {"encoding": "mbcs", "errors": "strict"}
paths = subprocess.check_output( # type: ignore[call-overload] # novermin
[
os.path.join(root, "Microsoft Visual Studio", "Installer", "vswhere.exe"),
@@ -48,10 +49,8 @@ class WindowsOs(OperatingSystem):
"-products",
"*",
],
**extra_args
**extra_args,
).strip()
if (3, 0) <= sys.version_info[:2] <= (3, 5):
paths = paths.decode()
vs_install_paths = paths.split("\n")
msvc_paths = [os.path.join(path, "VC", "Tools", "MSVC") for path in vs_install_paths]
for p in msvc_paths:
@@ -70,8 +69,8 @@ class WindowsOs(OperatingSystem):
compiler_search_paths = comp_search_paths
def __init__(self):
plat_ver = platform.release()
if Version(plat_ver) < Version("10"):
plat_ver = windows_version()
if plat_ver < Version("10"):
raise SpackError("Spack is not supported on Windows versions older than 10")
super(WindowsOs, self).__init__("windows{}".format(plat_ver), plat_ver)

View File

@@ -2,7 +2,6 @@
# Spack Project Developers. See the top-level COPYRIGHT file for details.
#
# SPDX-License-Identifier: (Apache-2.0 OR MIT)
"""This is where most of the action happens in Spack.
The spack package class structure is based strongly on Homebrew
@@ -18,6 +17,7 @@
import glob
import hashlib
import inspect
import io
import os
import re
import shutil
@@ -29,8 +29,6 @@
import warnings
from typing import Any, Callable, Dict, Iterable, List, Optional, Tuple, Type # novm
import six
import llnl.util.filesystem as fsys
import llnl.util.tty as tty
from llnl.util.lang import classproperty, memoized, nullcontext
@@ -66,13 +64,12 @@
from spack.util.web import FetchError
from spack.version import GitVersion, Version, VersionBase
if sys.version_info[0] >= 3:
FLAG_HANDLER_RETURN_TYPE = Tuple[
Optional[Iterable[str]],
Optional[Iterable[str]],
Optional[Iterable[str]],
]
FLAG_HANDLER_TYPE = Callable[[str, Iterable[str]], FLAG_HANDLER_RETURN_TYPE]
FLAG_HANDLER_RETURN_TYPE = Tuple[
Optional[Iterable[str]],
Optional[Iterable[str]],
Optional[Iterable[str]],
]
FLAG_HANDLER_TYPE = Callable[[str, Iterable[str]], FLAG_HANDLER_RETURN_TYPE]
"""Allowed URL schemes for spack packages."""
_ALLOWED_URL_SCHEMES = ["http", "https", "ftp", "file", "git"]
@@ -131,7 +128,7 @@ def preferred_version(pkg):
return sorted(pkg.versions, key=key_fn).pop()
class WindowsRPathMeta(object):
class WindowsRPath(object):
"""Collection of functionality surrounding Windows RPATH specific features
This is essentially meaningless for all other platforms
@@ -257,7 +254,7 @@ def determine_spec_details(cls, prefix, objs_in_prefix):
variants = [variants]
for variant in variants:
if isinstance(variant, six.string_types):
if isinstance(variant, str):
variant = (variant, {})
variant_str, extra_attributes = variant
spec_str = "{0}@{1} {2}".format(cls.name, version_str, variant_str)
@@ -444,7 +441,7 @@ def test_log_pathname(test_stage, spec):
return os.path.join(test_stage, "test-{0}-out.txt".format(TestSuite.test_pkg_id(spec)))
class PackageBase(six.with_metaclass(PackageMeta, WindowsRPathMeta, PackageViewMixin, object)):
class PackageBase(WindowsRPath, PackageViewMixin, metaclass=PackageMeta):
"""This is the superclass for all spack packages.
***The Package class***
@@ -531,10 +528,6 @@ class PackageBase(six.with_metaclass(PackageMeta, WindowsRPathMeta, PackageViewM
# These are default values for instance variables.
#
#: A list or set of build time test functions to be called when tests
#: are executed or 'None' if there are no such test functions.
build_time_test_callbacks = None # type: Optional[List[str]]
#: By default, packages are not virtual
#: Virtual packages override this attribute
virtual = False
@@ -543,10 +536,6 @@ class PackageBase(six.with_metaclass(PackageMeta, WindowsRPathMeta, PackageViewM
#: those that do not can be used to install a set of other Spack packages.
has_code = True
#: A list or set of install time test functions to be called when tests
#: are executed or 'None' if there are no such test functions.
install_time_test_callbacks = None # type: Optional[List[str]]
#: By default we build in parallel. Subclasses can override this.
parallel = True
@@ -557,6 +546,10 @@ class PackageBase(six.with_metaclass(PackageMeta, WindowsRPathMeta, PackageViewM
#: By default do not setup mockup XCode on macOS with Clang
use_xcode = False
#: Keep -Werror flags, matches config:flags:keep_werror to override config
# NOTE: should be type Optional[Literal['all', 'specific', 'none']] in 3.8+
keep_werror = None # type: Optional[str]
#: Most packages are NOT extendable. Set to True if you want extensions.
extendable = False
@@ -1661,10 +1654,7 @@ def content_hash(self, content=None):
b32_hash = base64.b32encode(
hashlib.sha256(bytes().join(sorted(hash_content))).digest()
).lower()
# convert from bytes if running python 3
if sys.version_info[0] >= 3:
b32_hash = b32_hash.decode("utf-8")
b32_hash = b32_hash.decode("utf-8")
return b32_hash
@@ -1874,7 +1864,7 @@ def cache_extra_test_sources(self, srcs):
be copied to the corresponding location(s) under the install
testing directory.
"""
paths = [srcs] if isinstance(srcs, six.string_types) else srcs
paths = [srcs] if isinstance(srcs, str) else srcs
for path in paths:
src_path = os.path.join(self.stage.source_path, path)
@@ -2004,7 +1994,7 @@ def run_test(
print(line.rstrip("\n"))
if exc_type is spack.util.executable.ProcessError:
out = six.StringIO()
out = io.StringIO()
spack.build_environment.write_log_summary(
out, "test", self.test_log_file, last=1
)
@@ -2026,9 +2016,9 @@ def run_test(
return False
def _run_test_helper(self, runner, options, expected, status, installed, purpose):
status = [status] if isinstance(status, six.integer_types) else status
expected = [expected] if isinstance(expected, six.string_types) else expected
options = [options] if isinstance(options, six.string_types) else options
status = [status] if isinstance(status, int) else status
expected = [expected] if isinstance(expected, str) else expected
options = [options] if isinstance(options, str) else options
if purpose:
tty.msg(purpose)
@@ -2369,7 +2359,7 @@ def format_doc(cls, **kwargs):
doc = re.sub(r"\s+", " ", cls.__doc__)
lines = textwrap.wrap(doc, 72)
results = six.StringIO()
results = io.StringIO()
for line in lines:
results.write((" " * indent) + line + "\n")
return results.getvalue()
@@ -2461,12 +2451,12 @@ def run_test_callbacks(builder, method_names, callback_type="install"):
try:
fn = getattr(builder, name)
msg = ("RUN-TESTS: {0}-time tests [{1}]".format(callback_type, name),)
msg = "RUN-TESTS: {0}-time tests [{1}]".format(callback_type, name)
print_test_message(logger, msg, True)
fn()
except AttributeError as e:
msg = ("RUN-TESTS: method not implemented [{0}]".format(name),)
msg = "RUN-TESTS: method not implemented [{0}]".format(name)
print_test_message(logger, msg, True)
builder.pkg.test_failures.append((e, msg))

View File

@@ -3,8 +3,7 @@
#
# SPDX-License-Identifier: (Apache-2.0 OR MIT)
import stat
from six import string_types
import warnings
import spack.error
import spack.repo
@@ -144,7 +143,7 @@ def preferred_variants(cls, pkg_name):
break
# allow variants to be list or string
if not isinstance(variants, string_types):
if not isinstance(variants, str):
variants = " ".join(variants)
# Only return variants that are actually supported by the package
@@ -223,6 +222,12 @@ def get_package_dir_permissions(spec):
perms = get_package_permissions(spec)
if perms & stat.S_IRWXG and spack.config.get("config:allow_sgid", True):
perms |= stat.S_ISGID
if spec.concrete and "/afs/" in spec.prefix:
warnings.warn(
"Directory {0} seems to be located on AFS. If you"
" encounter errors, try disabling the allow_sgid option"
" using: spack config add 'config:allow_sgid:false'".format(spec.prefix)
)
return perms

View File

@@ -8,8 +8,6 @@
import shlex
import sys
from six import string_types
import spack.error
import spack.util.path as sp
@@ -147,7 +145,7 @@ def expect(self, id):
sys.exit(1)
def setup(self, text):
if isinstance(text, string_types):
if isinstance(text, str):
# shlex does not handle Windows path
# separators, so we must normalize to posix
text = sp.convert_to_posix_path(text)

View File

@@ -36,6 +36,10 @@
_xc_craype_dir = "/opt/cray/pe/cdt"
def slingshot_network():
return os.path.exists("/lib64/libcxi.so")
def _target_name_from_craype_target_name(name):
return _craype_name_to_target_name.get(name, name)

View File

@@ -5,8 +5,6 @@
"""Classes and functions to manage providers of virtual dependencies"""
import itertools
import six
import spack.error
import spack.util.spack_json as sjson
@@ -66,7 +64,7 @@ def providers_for(self, virtual_spec):
"""
result = set()
# Allow string names to be passed as input, as well as specs
if isinstance(virtual_spec, six.string_types):
if isinstance(virtual_spec, str):
virtual_spec = spack.spec.Spec(virtual_spec)
# Add all the providers that satisfy the vpkg spec.
@@ -174,7 +172,7 @@ def update(self, spec):
assert not self.repository.is_virtual_safe(spec.name), msg
pkg_provided = self.repository.get_pkg_class(spec.name).provided
for provided_spec, provider_specs in six.iteritems(pkg_provided):
for provided_spec, provider_specs in pkg_provided.items():
for provider_spec_readonly in provider_specs:
# TODO: fix this comment.
# We want satisfaction other than flags
@@ -310,7 +308,7 @@ def _transform(providers, transform_fun, out_mapping_type=dict):
def mapiter(mappings):
if isinstance(mappings, dict):
return six.iteritems(mappings)
return mappings.items()
else:
return iter(mappings)

Some files were not shown because too many files have changed in this diff Show More