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7 Commits

Author SHA1 Message Date
Todd Gamblin
4c6564f10a update changelog for v0.18.0 (#30905) 2022-05-28 17:33:52 +02:00
Massimiliano Culpo
82919cb6a5 Remove the warning that Spack prints at each spec (#30872)
Add instead a warning box in the documentation
2022-05-28 16:37:51 +02:00
Greg Becker
844c799299 target optimization: re-norm optimization scale so that 0 is best. (#29926)
referred targets are currently the only minimization criteria for Spack for which we allow
negative values. That means Spack may be incentivized to add nodes to the DAG if they
match the preferred target.

This PR re-norms the minimization criteria so that preferred targets are weighted from 0,
and default target weights are offset by the number of preferred targets per-package to
calculate node_target_weight.

Also fixes a bug in the test for preferred targets that was making the test easier to pass
than it should be.
2022-05-27 22:51:03 -07:00
Greg Becker
9198ab63ae update tutorial command for v0.18.0 and new gpg key 2022-05-27 18:45:19 -07:00
Todd Gamblin
8f9bc5bba4 Revert "strip -Werror: all specific or none (#30284)"
This reverts commit 330832c22c.

`-Werror` chagnes were unfortunately causing the `rdma-core` build to fail.
Reverting on `v0.18`; we can fix this in `develop`
2022-05-26 12:13:40 -07:00
Scott Wittenburg
ca0c968639 ci: Support secure binary signing on protected pipelines (#30753)
This PR supports the creation of securely signed binaries built from spack
develop as well as release branches and tags. Specifically:

- remove internal pr mirror url generation logic in favor of buildcache destination
on command line
    - with a single mirror url specified in the spack.yaml, this makes it clearer where 
    binaries from various pipelines are pushed
- designate some tags as reserved: ['public', 'protected', 'notary']
    - these tags are stripped from all jobs by default and provisioned internally
    based on pipeline type
- update gitlab ci yaml to include pipelines on more protected branches than just
develop (so include releases and tags)
    - binaries from all protected pipelines are pushed into mirrors including the
    branch name so releases, tags, and develop binaries are kept separate
- update rebuild jobs running on protected pipelines to run on special runners
provisioned with an intermediate signing key
    - protected rebuild jobs no longer use "SPACK_SIGNING_KEY" env var to
    obtain signing key (in fact, final signing key is nowhere available to rebuild jobs)
    - these intermediate signatures are verified at the end of each pipeline by a new
    signing job to ensure binaries were produced by a protected pipeline
- optionallly schedule a signing/notary job at the end of the pipeline to sign all
packges in the mirror
    - add signing-job-attributes to gitlab-ci section of spack environment to allow
    configuration
    - signing job runs on special runner (separate from protected rebuild runners)
    provisioned with public intermediate key and secret signing key
2022-05-26 09:10:18 -07:00
Gregory Becker
d99a1b1047 release number for v0.18.0 2022-05-25 20:29:03 -07:00
9666 changed files with 271804 additions and 410437 deletions

43
.flake8
View File

@@ -1,25 +1,43 @@
# -*- conf -*-
# flake8 settings for Spack.
# flake8 settings for Spack core files.
#
# These exceptions are for Spack core files. We're slightly more lenient
# with packages. See .flake8_packages for that.
#
# This is the only flake8 rule Spack violates somewhat flagrantly
# E1: Indentation
# - E129: visually indented line with same indent as next logical line
#
# E2: Whitespace
# - E221: multiple spaces before operator
# - E241: multiple spaces after ','
# - E272: multiple spaces before keyword
#
# E7: Statement
# - E731: do not assign a lambda expression, use a def
#
# This is the only flake8 exception needed when using Black.
# - E203: white space around slice operators can be required, ignore : warn
# W5: Line break warning
# - W503: line break before binary operator
# - W504: line break after binary operator
#
# We still allow these in packages (Would like to get rid of them or rely on mypy
# in the future)
# - F403: from/import * used; unable to detect undefined names
# These are required to get the package.py files to test clean:
# - F999: syntax error in doctest
#
# N8: PEP8-naming
# - N801: class names should use CapWords convention
# - N813: camelcase imported as lowercase
# - N814: camelcase imported as constant
#
# F4: pyflakes import checks, these are now checked by mypy more precisely
# - F403: from module import *
# - F405: undefined name or from *
# - F821: undefined name (needed with from/import *)
#
# Black ignores, these are incompatible with black style and do not follow PEP-8
# - E203: white space around slice operators can be required, ignore : warn
# - W503: see above, already ignored for line-breaks
#
[flake8]
#ignore = E129,,W503,W504,F999,N801,N813,N814,F403,F405,E203
extend-ignore = E731,E203
max-line-length = 99
ignore = E129,E221,E241,E272,E731,W503,W504,F999,N801,N813,N814,F403,F405
max-line-length = 88
# F4: Import
# - F405: `name` may be undefined, or undefined from star imports: `module`
@@ -28,8 +46,7 @@ max-line-length = 99
# - F821: undefined name `name`
#
per-file-ignores =
var/spack/repos/*/package.py:F403,F405,F821
*-ci-package.py:F403,F405,F821
var/spack/repos/*/package.py:F405,F821
# exclude things we usually do not want linting for.
# These still get linted when passed explicitly, as when spack flake8 passes

View File

@@ -1,5 +0,0 @@
# .git-blame-ignore-revs
# Formatted entire codebase with black 23
603569e321013a1a63a637813c94c2834d0a0023
# Formatted entire codebase with black 22
f52f6e99dbf1131886a80112b8c79dfc414afb7c

1
.gitattributes vendored
View File

@@ -1,4 +1,3 @@
*.py diff=python
*.lp linguist-language=Prolog
lib/spack/external/* linguist-vendored
*.bat text eol=crlf

View File

@@ -9,7 +9,7 @@ body:
Thanks for taking the time to report this build failure. To proceed with the report please:
1. Title the issue `Installation issue: <name-of-the-package>`.
2. Provide the information required below.
We encourage you to try, as much as possible, to reduce your problem to the minimal example that still reproduces the issue. That would help us a lot in fixing it quickly and effectively!
- type: textarea
id: reproduce
@@ -29,9 +29,7 @@ body:
description: |
Please post the error message from spack inside the `<details>` tag below:
value: |
<details><summary>Error message</summary>
<pre>
<details><summary>Error message</summary><pre>
...
</pre></details>
validations:
@@ -55,7 +53,7 @@ body:
Please upload the following files:
* **`spack-build-out.txt`**
* **`spack-build-env.txt`**
They should be present in the stage directory of the failing build. Also upload any `config.log` or similar file if one exists.
- type: markdown
attributes:

View File

@@ -1,4 +1,4 @@
name: "\U0001F38A Feature request"
name: "\U0001F38A Feature request"
description: Suggest adding a feature that is not yet in Spack
labels: [feature]
body:
@@ -29,11 +29,13 @@ body:
attributes:
label: General information
options:
- label: I have run `spack --version` and reported the version of Spack
required: true
- label: I have searched the issues of this repo and believe this is not a duplicate
required: true
- type: markdown
attributes:
value: |
If you want to ask a question about the tool (how to use it, what it can currently do, etc.), try the `#general` channel on [our Slack](https://slack.spack.io/) first. We have a welcoming community and chances are you'll get your reply faster and without opening an issue.
Other than that, thanks for taking the time to contribute to Spack!

View File

@@ -1,64 +0,0 @@
name: "\U0001F4A5 Tests error"
description: Some package in Spack had stand-alone tests that didn't pass
title: "Testing issue: "
labels: [test-error]
body:
- type: textarea
id: reproduce
attributes:
label: Steps to reproduce the failure(s) or link(s) to test output(s)
description: |
Fill in the test output from the exact spec that is having stand-alone test failures. Links to test outputs (e.g., CDash) can also be provided.
value: |
```console
$ spack spec -I <spec>
...
```
- type: textarea
id: error
attributes:
label: Error message
description: |
Please post the error message from spack inside the `<details>` tag below:
value: |
<details><summary>Error message</summary>
<pre>
...
</pre></details>
validations:
required: true
- type: textarea
id: information
attributes:
label: Information on your system or the test runner
description: Please include the output of `spack debug report` for your system.
validations:
required: true
- type: markdown
attributes:
value: |
If you have any relevant configuration detail (custom `packages.yaml` or `modules.yaml`, etc.) you can add that here as well.
- type: textarea
id: additional_information
attributes:
label: Additional information
description: |
Please upload test logs or any additional information about the problem.
- type: markdown
attributes:
value: |
Some packages have maintainers who have volunteered to debug build failures. Run `spack maintainers <name-of-the-package>` and **@mention** them here if they exist.
- type: checkboxes
id: checks
attributes:
label: General information
options:
- label: I have reported the version of Spack/Python/Platform/Runner
required: true
- label: I have run `spack maintainers <name-of-the-package>` and **@mentioned** any maintainers
required: true
- label: I have uploaded any available logs
required: true
- label: I have searched the issues of this repo and believe this is not a duplicate
required: true

View File

@@ -5,13 +5,3 @@ updates:
directory: "/"
schedule:
interval: "daily"
# Requirements to build documentation
- package-ecosystem: "pip"
directory: "/lib/spack/docs"
schedule:
interval: "daily"
# Requirements to run style checks
- package-ecosystem: "pip"
directory: "/.github/workflows/style"
schedule:
interval: "daily"

View File

@@ -1,49 +0,0 @@
name: audit
on:
workflow_call:
inputs:
with_coverage:
required: true
type: string
python_version:
required: true
type: string
concurrency:
group: audit-${{inputs.python_version}}-${{github.ref}}-${{github.event.pull_request.number || github.run_number}}
cancel-in-progress: true
jobs:
# Run audits on all the packages in the built-in repository
package-audits:
runs-on: ${{ matrix.operating_system }}
strategy:
matrix:
operating_system: ["ubuntu-latest", "macos-latest"]
steps:
- uses: actions/checkout@b4ffde65f46336ab88eb53be808477a3936bae11 # @v2
- uses: actions/setup-python@65d7f2d534ac1bc67fcd62888c5f4f3d2cb2b236 # @v2
with:
python-version: ${{inputs.python_version}}
- name: Install Python packages
run: |
pip install --upgrade pip setuptools pytest coverage[toml]
- name: Package audits (with coverage)
if: ${{ inputs.with_coverage == 'true' }}
run: |
. share/spack/setup-env.sh
coverage run $(which spack) audit packages
coverage run $(which spack) audit externals
coverage combine
coverage xml
- name: Package audits (without coverage)
if: ${{ inputs.with_coverage == 'false' }}
run: |
. share/spack/setup-env.sh
$(which spack) audit packages
$(which spack) audit externals
- uses: codecov/codecov-action@eaaf4bedf32dbdc6b720b63067d99c4d77d6047d # @v2.1.0
if: ${{ inputs.with_coverage == 'true' }}
with:
flags: unittests,audits

View File

@@ -1,7 +0,0 @@
#!/bin/bash
set -ex
source share/spack/setup-env.sh
$PYTHON bin/spack bootstrap disable spack-install
$PYTHON bin/spack -d solve zlib
tree $BOOTSTRAP/store
exit 0

View File

@@ -3,19 +3,28 @@ name: Bootstrapping
on:
# This Workflow can be triggered manually
workflow_dispatch:
workflow_call:
pull_request:
branches:
- develop
- releases/**
paths-ignore:
# Don't run if we only modified packages in the
# built-in repository or documentation
- 'var/spack/repos/builtin/**'
- '!var/spack/repos/builtin/packages/clingo-bootstrap/**'
- '!var/spack/repos/builtin/packages/python/**'
- '!var/spack/repos/builtin/packages/re2c/**'
- 'lib/spack/docs/**'
schedule:
# nightly at 2:16 AM
- cron: '16 2 * * *'
concurrency:
group: bootstrap-${{github.ref}}-${{github.event.pull_request.number || github.run_number}}
cancel-in-progress: true
jobs:
fedora-clingo-sources:
runs-on: ubuntu-latest
container: "fedora:latest"
if: github.repository == 'spack/spack'
steps:
- name: Install dependencies
run: |
@@ -24,9 +33,7 @@ jobs:
make patch unzip which xz python3 python3-devel tree \
cmake bison bison-devel libstdc++-static
- name: Checkout
uses: actions/checkout@b4ffde65f46336ab88eb53be808477a3936bae11
with:
fetch-depth: 0
uses: actions/checkout@2541b1294d2704b0964813337f33b291d3f8596b
- name: Setup non-root user
run: |
# See [1] below
@@ -37,13 +44,13 @@ jobs:
shell: runuser -u spack-test -- bash {0}
run: |
git --version
git fetch --unshallow
. .github/workflows/setup_git.sh
- name: Bootstrap clingo
shell: runuser -u spack-test -- bash {0}
run: |
source share/spack/setup-env.sh
spack bootstrap disable github-actions-v0.5
spack bootstrap disable github-actions-v0.4
spack bootstrap untrust github-actions-v0.2
spack external find cmake bison
spack -d solve zlib
tree ~/.spack/bootstrap/store/
@@ -51,6 +58,7 @@ jobs:
ubuntu-clingo-sources:
runs-on: ubuntu-latest
container: "ubuntu:latest"
if: github.repository == 'spack/spack'
steps:
- name: Install dependencies
env:
@@ -62,9 +70,7 @@ jobs:
make patch unzip xz-utils python3 python3-dev tree \
cmake bison
- name: Checkout
uses: actions/checkout@b4ffde65f46336ab88eb53be808477a3936bae11
with:
fetch-depth: 0
uses: actions/checkout@2541b1294d2704b0964813337f33b291d3f8596b
- name: Setup non-root user
run: |
# See [1] below
@@ -75,13 +81,13 @@ jobs:
shell: runuser -u spack-test -- bash {0}
run: |
git --version
git fetch --unshallow
. .github/workflows/setup_git.sh
- name: Bootstrap clingo
shell: runuser -u spack-test -- bash {0}
run: |
source share/spack/setup-env.sh
spack bootstrap disable github-actions-v0.5
spack bootstrap disable github-actions-v0.4
spack bootstrap untrust github-actions-v0.2
spack external find cmake bison
spack -d solve zlib
tree ~/.spack/bootstrap/store/
@@ -89,6 +95,7 @@ jobs:
ubuntu-clingo-binaries-and-patchelf:
runs-on: ubuntu-latest
container: "ubuntu:latest"
if: github.repository == 'spack/spack'
steps:
- name: Install dependencies
env:
@@ -99,9 +106,7 @@ jobs:
bzip2 curl file g++ gcc gfortran git gnupg2 gzip \
make patch unzip xz-utils python3 python3-dev tree
- name: Checkout
uses: actions/checkout@b4ffde65f46336ab88eb53be808477a3936bae11
with:
fetch-depth: 0
uses: actions/checkout@2541b1294d2704b0964813337f33b291d3f8596b
- name: Setup non-root user
run: |
# See [1] below
@@ -112,6 +117,7 @@ jobs:
shell: runuser -u spack-test -- bash {0}
run: |
git --version
git fetch --unshallow
. .github/workflows/setup_git.sh
- name: Bootstrap clingo
shell: runuser -u spack-test -- bash {0}
@@ -123,6 +129,7 @@ jobs:
opensuse-clingo-sources:
runs-on: ubuntu-latest
container: "opensuse/leap:latest"
if: github.repository == 'spack/spack'
steps:
- name: Install dependencies
run: |
@@ -133,113 +140,90 @@ jobs:
make patch unzip which xz python3 python3-devel tree \
cmake bison
- name: Checkout
uses: actions/checkout@b4ffde65f46336ab88eb53be808477a3936bae11
with:
fetch-depth: 0
uses: actions/checkout@2541b1294d2704b0964813337f33b291d3f8596b
- name: Setup repo
run: |
# See [1] below
git config --global --add safe.directory /__w/spack/spack
git --version
git fetch --unshallow
. .github/workflows/setup_git.sh
- name: Bootstrap clingo
run: |
source share/spack/setup-env.sh
spack bootstrap disable github-actions-v0.5
spack bootstrap disable github-actions-v0.4
spack bootstrap untrust github-actions-v0.2
spack external find cmake bison
spack -d solve zlib
tree ~/.spack/bootstrap/store/
macos-clingo-sources:
runs-on: macos-latest
if: github.repository == 'spack/spack'
steps:
- name: Install dependencies
run: |
brew install cmake bison@2.7 tree
- name: Checkout
uses: actions/checkout@b4ffde65f46336ab88eb53be808477a3936bae11
- uses: actions/setup-python@65d7f2d534ac1bc67fcd62888c5f4f3d2cb2b236 # @v2
with:
python-version: "3.12"
uses: actions/checkout@2541b1294d2704b0964813337f33b291d3f8596b
- name: Bootstrap clingo
run: |
source share/spack/setup-env.sh
export PATH=/usr/local/opt/bison@2.7/bin:$PATH
spack bootstrap disable github-actions-v0.5
spack bootstrap disable github-actions-v0.4
spack bootstrap untrust github-actions-v0.2
spack external find --not-buildable cmake bison
spack -d solve zlib
tree ~/.spack/bootstrap/store/
macos-clingo-binaries:
runs-on: ${{ matrix.macos-version }}
runs-on: macos-latest
strategy:
matrix:
macos-version: ['macos-12']
python-version: ['3.5', '3.6', '3.7', '3.8', '3.9', '3.10']
if: github.repository == 'spack/spack'
steps:
- name: Install dependencies
run: |
brew install tree
- name: Checkout
uses: actions/checkout@b4ffde65f46336ab88eb53be808477a3936bae11
uses: actions/checkout@2541b1294d2704b0964813337f33b291d3f8596b
- uses: actions/setup-python@98f2ad02fd48d057ee3b4d4f66525b231c3e52b6
with:
python-version: ${{ matrix.python-version }}
- name: Bootstrap clingo
run: |
set -ex
for ver in '3.7' '3.8' '3.9' '3.10' '3.11' ; do
not_found=1
ver_dir="$(find $RUNNER_TOOL_CACHE/Python -wholename "*/${ver}.*/*/bin" | grep . || true)"
echo "Testing $ver_dir"
if [[ -d "$ver_dir" ]] ; then
if $ver_dir/python --version ; then
export PYTHON="$ver_dir/python"
not_found=0
old_path="$PATH"
export PATH="$ver_dir:$PATH"
./bin/spack-tmpconfig -b ./.github/workflows/bootstrap-test.sh
export PATH="$old_path"
fi
fi
# NOTE: test all pythons that exist, not all do on 12
done
source share/spack/setup-env.sh
spack bootstrap untrust spack-install
spack -d solve zlib
tree ~/.spack/bootstrap/store/
ubuntu-clingo-binaries:
runs-on: ubuntu-20.04
runs-on: ubuntu-latest
strategy:
matrix:
python-version: ['2.7', '3.5', '3.6', '3.7', '3.8', '3.9', '3.10']
if: github.repository == 'spack/spack'
steps:
- name: Checkout
uses: actions/checkout@b4ffde65f46336ab88eb53be808477a3936bae11
uses: actions/checkout@2541b1294d2704b0964813337f33b291d3f8596b
- uses: actions/setup-python@98f2ad02fd48d057ee3b4d4f66525b231c3e52b6
with:
fetch-depth: 0
python-version: ${{ matrix.python-version }}
- name: Setup repo
run: |
git --version
git fetch --unshallow
. .github/workflows/setup_git.sh
- name: Bootstrap clingo
run: |
set -ex
for ver in '3.7' '3.8' '3.9' '3.10' '3.11' ; do
not_found=1
ver_dir="$(find $RUNNER_TOOL_CACHE/Python -wholename "*/${ver}.*/*/bin" | grep . || true)"
echo "Testing $ver_dir"
if [[ -d "$ver_dir" ]] ; then
if $ver_dir/python --version ; then
export PYTHON="$ver_dir/python"
not_found=0
old_path="$PATH"
export PATH="$ver_dir:$PATH"
./bin/spack-tmpconfig -b ./.github/workflows/bootstrap-test.sh
export PATH="$old_path"
fi
fi
if (($not_found)) ; then
echo Required python version $ver not found in runner!
exit 1
fi
done
source share/spack/setup-env.sh
spack bootstrap untrust spack-install
spack -d solve zlib
tree ~/.spack/bootstrap/store/
ubuntu-gnupg-binaries:
runs-on: ubuntu-latest
container: "ubuntu:latest"
if: github.repository == 'spack/spack'
steps:
- name: Install dependencies
env:
@@ -250,9 +234,7 @@ jobs:
bzip2 curl file g++ gcc patchelf gfortran git gzip \
make patch unzip xz-utils python3 python3-dev tree
- name: Checkout
uses: actions/checkout@b4ffde65f46336ab88eb53be808477a3936bae11
with:
fetch-depth: 0
uses: actions/checkout@2541b1294d2704b0964813337f33b291d3f8596b
- name: Setup non-root user
run: |
# See [1] below
@@ -263,19 +245,20 @@ jobs:
shell: runuser -u spack-test -- bash {0}
run: |
git --version
git fetch --unshallow
. .github/workflows/setup_git.sh
- name: Bootstrap GnuPG
shell: runuser -u spack-test -- bash {0}
run: |
source share/spack/setup-env.sh
spack bootstrap disable github-actions-v0.4
spack bootstrap disable spack-install
spack bootstrap untrust spack-install
spack -d gpg list
tree ~/.spack/bootstrap/store/
ubuntu-gnupg-sources:
runs-on: ubuntu-latest
container: "ubuntu:latest"
if: github.repository == 'spack/spack'
steps:
- name: Install dependencies
env:
@@ -287,9 +270,7 @@ jobs:
make patch unzip xz-utils python3 python3-dev tree \
gawk
- name: Checkout
uses: actions/checkout@b4ffde65f46336ab88eb53be808477a3936bae11
with:
fetch-depth: 0
uses: actions/checkout@2541b1294d2704b0964813337f33b291d3f8596b
- name: Setup non-root user
run: |
# See [1] below
@@ -300,19 +281,20 @@ jobs:
shell: runuser -u spack-test -- bash {0}
run: |
git --version
git fetch --unshallow
. .github/workflows/setup_git.sh
- name: Bootstrap GnuPG
shell: runuser -u spack-test -- bash {0}
run: |
source share/spack/setup-env.sh
spack solve zlib
spack bootstrap disable github-actions-v0.5
spack bootstrap disable github-actions-v0.4
spack bootstrap untrust github-actions-v0.2
spack -d gpg list
tree ~/.spack/bootstrap/store/
macos-gnupg-binaries:
runs-on: macos-latest
if: github.repository == 'spack/spack'
steps:
- name: Install dependencies
run: |
@@ -320,17 +302,17 @@ jobs:
# Remove GnuPG since we want to bootstrap it
sudo rm -rf /usr/local/bin/gpg
- name: Checkout
uses: actions/checkout@b4ffde65f46336ab88eb53be808477a3936bae11
uses: actions/checkout@2541b1294d2704b0964813337f33b291d3f8596b
- name: Bootstrap GnuPG
run: |
source share/spack/setup-env.sh
spack bootstrap disable github-actions-v0.4
spack bootstrap disable spack-install
spack bootstrap untrust spack-install
spack -d gpg list
tree ~/.spack/bootstrap/store/
macos-gnupg-sources:
runs-on: macos-latest
if: github.repository == 'spack/spack'
steps:
- name: Install dependencies
run: |
@@ -338,13 +320,12 @@ jobs:
# Remove GnuPG since we want to bootstrap it
sudo rm -rf /usr/local/bin/gpg
- name: Checkout
uses: actions/checkout@b4ffde65f46336ab88eb53be808477a3936bae11
uses: actions/checkout@2541b1294d2704b0964813337f33b291d3f8596b
- name: Bootstrap GnuPG
run: |
source share/spack/setup-env.sh
spack solve zlib
spack bootstrap disable github-actions-v0.5
spack bootstrap disable github-actions-v0.4
spack bootstrap untrust github-actions-v0.2
spack -d gpg list
tree ~/.spack/bootstrap/store/

View File

@@ -13,16 +13,12 @@ on:
paths:
- '.github/workflows/build-containers.yml'
- 'share/spack/docker/*'
- 'share/spack/templates/container/*'
- 'share/templates/container/*'
- 'lib/spack/spack/container/*'
# Let's also build & tag Spack containers on releases.
release:
types: [published]
concurrency:
group: build_containers-${{github.ref}}-${{github.event.pull_request.number || github.run_number}}
cancel-in-progress: true
jobs:
deploy-images:
runs-on: ubuntu-latest
@@ -38,39 +34,32 @@ jobs:
# Meaning of the various items in the matrix list
# 0: Container name (e.g. ubuntu-bionic)
# 1: Platforms to build for
# 2: Base image (e.g. ubuntu:22.04)
# 2: Base image (e.g. ubuntu:18.04)
dockerfile: [[amazon-linux, 'linux/amd64,linux/arm64', 'amazonlinux:2'],
[centos7, 'linux/amd64,linux/arm64,linux/ppc64le', 'centos:7'],
[centos-stream, 'linux/amd64,linux/arm64,linux/ppc64le', 'centos:stream'],
[leap15, 'linux/amd64,linux/arm64,linux/ppc64le', 'opensuse/leap:15'],
[ubuntu-bionic, 'linux/amd64,linux/arm64,linux/ppc64le', 'ubuntu:18.04'],
[ubuntu-focal, 'linux/amd64,linux/arm64,linux/ppc64le', 'ubuntu:20.04'],
[ubuntu-jammy, 'linux/amd64,linux/arm64,linux/ppc64le', 'ubuntu:22.04'],
[almalinux8, 'linux/amd64,linux/arm64,linux/ppc64le', 'almalinux:8'],
[almalinux9, 'linux/amd64,linux/arm64,linux/ppc64le', 'almalinux:9'],
[rockylinux8, 'linux/amd64,linux/arm64', 'rockylinux:8'],
[rockylinux9, 'linux/amd64,linux/arm64', 'rockylinux:9'],
[fedora37, 'linux/amd64,linux/arm64,linux/ppc64le', 'fedora:37'],
[fedora38, 'linux/amd64,linux/arm64,linux/ppc64le', 'fedora:38']]
[ubuntu-jammy, 'linux/amd64,linux/arm64,linux/ppc64le', 'ubuntu:22.04']]
name: Build ${{ matrix.dockerfile[0] }}
if: github.repository == 'spack/spack'
steps:
- name: Checkout
uses: actions/checkout@b4ffde65f46336ab88eb53be808477a3936bae11 # @v2
uses: actions/checkout@2541b1294d2704b0964813337f33b291d3f8596b # @v2
- uses: docker/metadata-action@96383f45573cb7f253c731d3b3ab81c87ef81934
id: docker_meta
with:
images: |
ghcr.io/${{ github.repository_owner }}/${{ matrix.dockerfile[0] }}
${{ github.repository_owner }}/${{ matrix.dockerfile[0] }}
tags: |
type=schedule,pattern=nightly
type=schedule,pattern=develop
type=semver,pattern={{version}}
type=semver,pattern={{major}}.{{minor}}
type=semver,pattern={{major}}
type=ref,event=branch
type=ref,event=pr
- name: Set Container Tag Normal (Nightly)
run: |
container="${{ matrix.dockerfile[0] }}:latest"
echo "container=${container}" >> $GITHUB_ENV
echo "versioned=${container}" >> $GITHUB_ENV
# On a new release create a container with the same tag as the release.
- name: Set Container Tag on Release
if: github.event_name == 'release'
run: |
versioned="${{matrix.dockerfile[0]}}:${GITHUB_REF##*/}"
echo "versioned=${versioned}" >> $GITHUB_ENV
- name: Generate the Dockerfile
env:
@@ -87,19 +76,19 @@ jobs:
fi
- name: Upload Dockerfile
uses: actions/upload-artifact@a8a3f3ad30e3422c9c7b888a15615d19a852ae32
uses: actions/upload-artifact@3cea5372237819ed00197afe530f5a7ea3e805c8
with:
name: dockerfiles
path: dockerfiles
- name: Set up QEMU
uses: docker/setup-qemu-action@68827325e0b33c7199eb31dd4e31fbe9023e06e3
uses: docker/setup-qemu-action@8b122486cedac8393e77aa9734c3528886e4a1a8 # @v1
- name: Set up Docker Buildx
uses: docker/setup-buildx-action@f95db51fddba0c2d1ec667646a06c2ce06100226
uses: docker/setup-buildx-action@dc7b9719a96d48369863986a06765841d7ea23f6 # @v1
- name: Log in to GitHub Container Registry
uses: docker/login-action@343f7c4344506bcbf9b4de18042ae17996df046d
uses: docker/login-action@49ed152c8eca782a232dede0303416e8f356c37b # @v1
with:
registry: ghcr.io
username: ${{ github.actor }}
@@ -107,18 +96,21 @@ jobs:
- name: Log in to DockerHub
if: github.event_name != 'pull_request'
uses: docker/login-action@343f7c4344506bcbf9b4de18042ae17996df046d
uses: docker/login-action@49ed152c8eca782a232dede0303416e8f356c37b # @v1
with:
username: ${{ secrets.DOCKERHUB_USERNAME }}
password: ${{ secrets.DOCKERHUB_TOKEN }}
- name: Build & Deploy ${{ matrix.dockerfile[0] }}
uses: docker/build-push-action@0565240e2d4ab88bba5387d719585280857ece09
uses: docker/build-push-action@e551b19e49efd4e98792db7592c17c09b89db8d8 # @v2
with:
context: dockerfiles/${{ matrix.dockerfile[0] }}
platforms: ${{ matrix.dockerfile[1] }}
push: ${{ github.event_name != 'pull_request' }}
cache-from: type=gha
cache-to: type=gha,mode=max
tags: ${{ steps.docker_meta.outputs.tags }}
labels: ${{ steps.docker_meta.outputs.labels }}
tags: |
spack/${{ env.container }}
spack/${{ env.versioned }}
ghcr.io/spack/${{ env.container }}
ghcr.io/spack/${{ env.versioned }}

View File

@@ -1,86 +0,0 @@
name: ci
on:
push:
branches:
- develop
- releases/**
pull_request:
branches:
- develop
- releases/**
concurrency:
group: ci-${{github.ref}}-${{github.event.pull_request.number || github.run_number}}
cancel-in-progress: true
jobs:
prechecks:
needs: [ changes ]
uses: ./.github/workflows/valid-style.yml
with:
with_coverage: ${{ needs.changes.outputs.core }}
all-prechecks:
needs: [ prechecks ]
runs-on: ubuntu-latest
steps:
- name: Success
run: "true"
# Check which files have been updated by the PR
changes:
runs-on: ubuntu-latest
# Set job outputs to values from filter step
outputs:
bootstrap: ${{ steps.filter.outputs.bootstrap }}
core: ${{ steps.filter.outputs.core }}
packages: ${{ steps.filter.outputs.packages }}
steps:
- uses: actions/checkout@b4ffde65f46336ab88eb53be808477a3936bae11 # @v2
if: ${{ github.event_name == 'push' }}
with:
fetch-depth: 0
# For pull requests it's not necessary to checkout the code
- uses: dorny/paths-filter@4512585405083f25c027a35db413c2b3b9006d50
id: filter
with:
# See https://github.com/dorny/paths-filter/issues/56 for the syntax used below
# Don't run if we only modified packages in the
# built-in repository or documentation
filters: |
bootstrap:
- 'var/spack/repos/builtin/packages/clingo-bootstrap/**'
- 'var/spack/repos/builtin/packages/clingo/**'
- 'var/spack/repos/builtin/packages/python/**'
- 'var/spack/repos/builtin/packages/re2c/**'
- 'lib/spack/**'
- 'share/spack/**'
- '.github/workflows/bootstrap.yml'
- '.github/workflows/ci.yaml'
core:
- './!(var/**)/**'
packages:
- 'var/**'
# Some links for easier reference:
#
# "github" context: https://docs.github.com/en/actions/reference/context-and-expression-syntax-for-github-actions#github-context
# job outputs: https://docs.github.com/en/actions/reference/workflow-syntax-for-github-actions#jobsjob_idoutputs
# setting environment variables from earlier steps: https://docs.github.com/en/actions/reference/workflow-commands-for-github-actions#setting-an-environment-variable
#
bootstrap:
if: ${{ github.repository == 'spack/spack' && needs.changes.outputs.bootstrap == 'true' }}
needs: [ prechecks, changes ]
uses: ./.github/workflows/bootstrap.yml
unit-tests:
if: ${{ github.repository == 'spack/spack' && needs.changes.outputs.core == 'true' }}
needs: [ prechecks, changes ]
uses: ./.github/workflows/unit_tests.yaml
windows:
if: ${{ github.repository == 'spack/spack' && needs.changes.outputs.core == 'true' }}
needs: [ prechecks ]
uses: ./.github/workflows/windows_python.yml
all:
needs: [ windows, unit-tests, bootstrap ]
runs-on: ubuntu-latest
steps:
- name: Success
run: "true"

67
.github/workflows/macos_python.yml vendored Normal file
View File

@@ -0,0 +1,67 @@
# These are nightly package tests for macOS
# focus areas:
# - initial user experience
# - scientific python stack
name: macOS builds nightly
on:
schedule:
# nightly at 1 AM
- cron: '0 1 * * *'
pull_request:
branches:
- develop
paths:
# Run if we modify this yaml file
- '.github/workflows/macos_python.yml'
# TODO: run if we touch any of the recipes involved in this
# GitHub Action Limits
# https://help.github.com/en/actions/reference/workflow-syntax-for-github-actions
jobs:
install_gcc:
name: gcc with clang
if: github.repository == 'spack/spack'
runs-on: macos-latest
steps:
- uses: actions/checkout@2541b1294d2704b0964813337f33b291d3f8596b # @v2
- uses: actions/setup-python@98f2ad02fd48d057ee3b4d4f66525b231c3e52b6 # @v2
with:
python-version: 3.9
- name: spack install
run: |
. .github/workflows/install_spack.sh
# 9.2.0 is the latest version on which we apply homebrew patch
spack install -v --fail-fast gcc@11.2.0 %apple-clang
install_jupyter_clang:
name: jupyter
if: github.repository == 'spack/spack'
runs-on: macos-latest
timeout-minutes: 700
steps:
- uses: actions/checkout@2541b1294d2704b0964813337f33b291d3f8596b # @v2
- uses: actions/setup-python@98f2ad02fd48d057ee3b4d4f66525b231c3e52b6 # @v2
with:
python-version: 3.9
- name: spack install
run: |
. .github/workflows/install_spack.sh
spack install -v --fail-fast py-jupyterlab %apple-clang
install_scipy_clang:
name: scipy, mpl, pd
if: github.repository == 'spack/spack'
runs-on: macos-latest
steps:
- uses: actions/checkout@2541b1294d2704b0964813337f33b291d3f8596b # @v2
- uses: actions/setup-python@98f2ad02fd48d057ee3b4d4f66525b231c3e52b6 # @v2
with:
python-version: 3.9
- name: spack install
run: |
. .github/workflows/install_spack.sh
spack install -v --fail-fast py-scipy %apple-clang
spack install -v --fail-fast py-matplotlib %apple-clang
spack install -v --fail-fast py-pandas %apple-clang

View File

@@ -1,31 +0,0 @@
name: Windows Paraview Nightly
on:
schedule:
- cron: '0 2 * * *' # Run at 2 am
defaults:
run:
shell:
powershell Invoke-Expression -Command "./share/spack/qa/windows_test_setup.ps1"; {0}
jobs:
build-paraview-deps:
runs-on: windows-latest
steps:
- uses: actions/checkout@b4ffde65f46336ab88eb53be808477a3936bae11
with:
fetch-depth: 0
- uses: actions/setup-python@65d7f2d534ac1bc67fcd62888c5f4f3d2cb2b236
with:
python-version: 3.9
- name: Install Python packages
run: |
python -m pip install --upgrade pip six pywin32 setuptools coverage
- name: Build Test
run: |
spack compiler find
spack external find cmake ninja win-sdk win-wdk wgl msmpi
spack -d install -y --cdash-upload-url https://cdash.spack.io/submit.php?project=Spack+on+Windows --cdash-track Nightly --only dependencies paraview
exit 0

View File

@@ -1,4 +1,6 @@
# (c) 2022 Lawrence Livermore National Laboratory
# (c) 2021 Lawrence Livermore National Laboratory
Set-Location spack
git config --global user.email "spack@example.com"
git config --global user.name "Test User"

View File

@@ -1,7 +0,0 @@
black==23.10.1
clingo==5.6.2
flake8==6.1.0
isort==5.12.0
mypy==1.6.1
types-six==1.16.21.9
vermin==1.5.2

View File

@@ -1,60 +1,115 @@
name: unit tests
name: linux tests
on:
workflow_dispatch:
workflow_call:
concurrency:
group: unit_tests-${{github.ref}}-${{github.event.pull_request.number || github.run_number}}
cancel-in-progress: true
push:
branches:
- develop
- releases/**
pull_request:
branches:
- develop
- releases/**
jobs:
# Run unit tests with different configurations on linux
ubuntu:
runs-on: ${{ matrix.os }}
strategy:
matrix:
os: [ubuntu-latest]
python-version: ['3.7', '3.8', '3.9', '3.10', '3.11', '3.12']
concretizer: ['clingo']
on_develop:
- ${{ github.ref == 'refs/heads/develop' }}
include:
- python-version: '3.11'
os: ubuntu-latest
concretizer: original
on_develop: ${{ github.ref == 'refs/heads/develop' }}
- python-version: '3.6'
os: ubuntu-20.04
concretizer: clingo
on_develop: ${{ github.ref == 'refs/heads/develop' }}
exclude:
- python-version: '3.7'
os: ubuntu-latest
concretizer: 'clingo'
on_develop: false
- python-version: '3.8'
os: ubuntu-latest
concretizer: 'clingo'
on_develop: false
- python-version: '3.9'
os: ubuntu-latest
concretizer: 'clingo'
on_develop: false
- python-version: '3.10'
os: ubuntu-latest
concretizer: 'clingo'
on_develop: false
- python-version: '3.11'
os: ubuntu-latest
concretizer: 'clingo'
on_develop: false
# Validate that the code can be run on all the Python versions
# supported by Spack
validate:
runs-on: ubuntu-latest
steps:
- uses: actions/checkout@b4ffde65f46336ab88eb53be808477a3936bae11 # @v2
- uses: actions/checkout@2541b1294d2704b0964813337f33b291d3f8596b # @v2
- uses: actions/setup-python@98f2ad02fd48d057ee3b4d4f66525b231c3e52b6 # @v2
with:
python-version: '3.10'
- name: Install Python Packages
run: |
pip install --upgrade pip
pip install --upgrade vermin
- name: vermin (Spack's Core)
run: vermin --backport argparse --violations --backport typing -t=2.7- -t=3.5- -vvv lib/spack/spack/ lib/spack/llnl/ bin/
- name: vermin (Repositories)
run: vermin --backport argparse --violations --backport typing -t=2.7- -t=3.5- -vvv var/spack/repos
# Run style checks on the files that have been changed
style:
runs-on: ubuntu-latest
steps:
- uses: actions/checkout@2541b1294d2704b0964813337f33b291d3f8596b # @v2
with:
fetch-depth: 0
- uses: actions/setup-python@65d7f2d534ac1bc67fcd62888c5f4f3d2cb2b236 # @v2
- uses: actions/setup-python@98f2ad02fd48d057ee3b4d4f66525b231c3e52b6 # @v2
with:
python-version: '3.10'
- name: Install Python packages
run: |
pip install --upgrade pip six setuptools types-six
- name: Setup git configuration
run: |
# Need this for the git tests to succeed.
git --version
. .github/workflows/setup_git.sh
- name: Run style tests
run: |
share/spack/qa/run-style-tests
# Check which files have been updated by the PR
changes:
runs-on: ubuntu-latest
# Set job outputs to values from filter step
outputs:
core: ${{ steps.filter.outputs.core }}
packages: ${{ steps.filter.outputs.packages }}
with_coverage: ${{ steps.coverage.outputs.with_coverage }}
steps:
- uses: actions/checkout@2541b1294d2704b0964813337f33b291d3f8596b # @v2
if: ${{ github.event_name == 'push' }}
with:
fetch-depth: 0
# For pull requests it's not necessary to checkout the code
- uses: dorny/paths-filter@b2feaf19c27470162a626bd6fa8438ae5b263721
id: filter
with:
# See https://github.com/dorny/paths-filter/issues/56 for the syntax used below
filters: |
core:
- './!(var/**)/**'
packages:
- 'var/**'
# Some links for easier reference:
#
# "github" context: https://docs.github.com/en/actions/reference/context-and-expression-syntax-for-github-actions#github-context
# job outputs: https://docs.github.com/en/actions/reference/workflow-syntax-for-github-actions#jobsjob_idoutputs
# setting environment variables from earlier steps: https://docs.github.com/en/actions/reference/workflow-commands-for-github-actions#setting-an-environment-variable
#
- id: coverage
# Run the subsequent jobs with coverage if core has been modified,
# regardless of whether this is a pull request or a push to a branch
run: |
echo Core changes: ${{ steps.filter.outputs.core }}
echo Event name: ${{ github.event_name }}
if [ "${{ steps.filter.outputs.core }}" == "true" ]
then
echo "::set-output name=with_coverage::true"
else
echo "::set-output name=with_coverage::false"
fi
# Run unit tests with different configurations on linux
unittests:
needs: [ validate, style, changes ]
runs-on: ubuntu-latest
strategy:
matrix:
python-version: ['2.7', '3.5', '3.6', '3.7', '3.8', '3.9', '3.10']
concretizer: ['clingo']
include:
- python-version: 2.7
concretizer: original
- python-version: 3.6
concretizer: original
- python-version: 3.9
concretizer: original
steps:
- uses: actions/checkout@2541b1294d2704b0964813337f33b291d3f8596b # @v2
with:
fetch-depth: 0
- uses: actions/setup-python@98f2ad02fd48d057ee3b4d4f66525b231c3e52b6 # @v2
with:
python-version: ${{ matrix.python-version }}
- name: Install System packages
@@ -63,11 +118,19 @@ jobs:
# Needed for unit tests
sudo apt-get -y install \
coreutils cvs gfortran graphviz gnupg2 mercurial ninja-build \
cmake bison libbison-dev kcov
patchelf cmake bison libbison-dev kcov
- name: Install Python packages
run: |
pip install --upgrade pip setuptools pytest pytest-xdist pytest-cov
pip install --upgrade flake8 "isort>=4.3.5" "mypy>=0.900" "click" "black"
pip install --upgrade pip six setuptools pytest codecov "coverage[toml]<=6.2"
# ensure style checks are not skipped in unit tests for python >= 3.6
# note that true/false (i.e., 1/0) are opposite in conditions in python and bash
if python -c 'import sys; sys.exit(not sys.version_info >= (3, 6))'; then
pip install --upgrade flake8 isort>=4.3.5 mypy>=0.900 black
fi
- name: Pin pathlib for Python 2.7
if: ${{ matrix.python-version == 2.7 }}
run: |
pip install -U pathlib2==2.3.6
- name: Setup git configuration
run: |
# Need this for the git tests to succeed.
@@ -79,31 +142,41 @@ jobs:
SPACK_PYTHON: python
run: |
. share/spack/setup-env.sh
spack bootstrap disable spack-install
spack bootstrap now
spack bootstrap untrust spack-install
spack -v solve zlib
- name: Run unit tests
- name: Run unit tests (full suite with coverage)
if: ${{ needs.changes.outputs.with_coverage == 'true' }}
env:
SPACK_PYTHON: python
SPACK_TEST_SOLVER: ${{ matrix.concretizer }}
SPACK_TEST_PARALLEL: 2
COVERAGE: true
UNIT_TEST_COVERAGE: ${{ matrix.python-version == '3.11' }}
SPACK_TEST_SOLVER: ${{ matrix.concretizer }}
run: |
share/spack/qa/run-unit-tests
- uses: codecov/codecov-action@eaaf4bedf32dbdc6b720b63067d99c4d77d6047d
coverage combine
coverage xml
- name: Run unit tests (reduced suite without coverage)
if: ${{ needs.changes.outputs.with_coverage == 'false' }}
env:
SPACK_PYTHON: python
ONLY_PACKAGES: true
SPACK_TEST_SOLVER: ${{ matrix.concretizer }}
run: |
share/spack/qa/run-unit-tests
- uses: codecov/codecov-action@81cd2dc8148241f03f5839d295e000b8f761e378 # @v2.1.0
if: ${{ needs.changes.outputs.with_coverage == 'true' }}
with:
flags: unittests,linux,${{ matrix.concretizer }}
# Test shell integration
shell:
needs: [ validate, style, changes ]
runs-on: ubuntu-latest
steps:
- uses: actions/checkout@b4ffde65f46336ab88eb53be808477a3936bae11 # @v2
- uses: actions/checkout@2541b1294d2704b0964813337f33b291d3f8596b # @v2
with:
fetch-depth: 0
- uses: actions/setup-python@65d7f2d534ac1bc67fcd62888c5f4f3d2cb2b236 # @v2
- uses: actions/setup-python@98f2ad02fd48d057ee3b4d4f66525b231c3e52b6 # @v2
with:
python-version: '3.11'
python-version: '3.10'
- name: Install System packages
run: |
sudo apt-get -y update
@@ -111,25 +184,33 @@ jobs:
sudo apt-get install -y coreutils kcov csh zsh tcsh fish dash bash
- name: Install Python packages
run: |
pip install --upgrade pip setuptools pytest coverage[toml] pytest-xdist
pip install --upgrade pip six setuptools pytest codecov coverage[toml]==6.2
- name: Setup git configuration
run: |
# Need this for the git tests to succeed.
git --version
. .github/workflows/setup_git.sh
- name: Run shell tests
- name: Run shell tests (without coverage)
if: ${{ needs.changes.outputs.with_coverage == 'false' }}
run: |
share/spack/qa/run-shell-tests
- name: Run shell tests (with coverage)
if: ${{ needs.changes.outputs.with_coverage == 'true' }}
env:
COVERAGE: true
run: |
share/spack/qa/run-shell-tests
- uses: codecov/codecov-action@eaaf4bedf32dbdc6b720b63067d99c4d77d6047d
- uses: codecov/codecov-action@81cd2dc8148241f03f5839d295e000b8f761e378 # @v2.1.0
if: ${{ needs.changes.outputs.with_coverage == 'true' }}
with:
flags: shelltests,linux
# Test RHEL8 UBI with platform Python. This job is run
# only on PRs modifying core Spack
rhel8-platform-python:
needs: [ validate, style, changes ]
runs-on: ubuntu-latest
if: ${{ needs.changes.outputs.with_coverage == 'true' }}
container: registry.access.redhat.com/ubi8/ubi
steps:
- name: Install dependencies
@@ -137,11 +218,10 @@ jobs:
dnf install -y \
bzip2 curl file gcc-c++ gcc gcc-gfortran git gnupg2 gzip \
make patch tcl unzip which xz
- uses: actions/checkout@b4ffde65f46336ab88eb53be808477a3936bae11 # @v2
- uses: actions/checkout@2541b1294d2704b0964813337f33b291d3f8596b # @v2
- name: Setup repo and non-root user
run: |
git --version
git config --global --add safe.directory /__w/spack/spack
git fetch --unshallow
. .github/workflows/setup_git.sh
useradd spack-test
@@ -150,72 +230,127 @@ jobs:
shell: runuser -u spack-test -- bash {0}
run: |
source share/spack/setup-env.sh
spack -d bootstrap now --dev
spack -d solve zlib
spack unit-test -k 'not cvs and not svn and not hg' -x --verbose
# Test for the clingo based solver (using clingo-cffi)
clingo-cffi:
needs: [ validate, style, changes ]
runs-on: ubuntu-latest
steps:
- uses: actions/checkout@b4ffde65f46336ab88eb53be808477a3936bae11 # @v2
- uses: actions/checkout@2541b1294d2704b0964813337f33b291d3f8596b # @v2
with:
fetch-depth: 0
- uses: actions/setup-python@65d7f2d534ac1bc67fcd62888c5f4f3d2cb2b236 # @v2
- uses: actions/setup-python@98f2ad02fd48d057ee3b4d4f66525b231c3e52b6 # @v2
with:
python-version: '3.11'
python-version: '3.10'
- name: Install System packages
run: |
sudo apt-get -y update
sudo apt-get -y install coreutils cvs gfortran graphviz gnupg2 mercurial ninja-build kcov
# Needed for unit tests
sudo apt-get -y install \
coreutils cvs gfortran graphviz gnupg2 mercurial ninja-build \
patchelf kcov
- name: Install Python packages
run: |
pip install --upgrade pip setuptools pytest coverage[toml] pytest-cov clingo pytest-xdist
pip install --upgrade flake8 "isort>=4.3.5" "mypy>=0.900" "click" "black"
pip install --upgrade pip six setuptools pytest codecov coverage[toml]==6.2 clingo
- name: Setup git configuration
run: |
# Need this for the git tests to succeed.
git --version
. .github/workflows/setup_git.sh
- name: Run unit tests (full suite with coverage)
if: ${{ needs.changes.outputs.with_coverage == 'true' }}
env:
COVERAGE: true
SPACK_TEST_SOLVER: clingo
run: |
share/spack/qa/run-unit-tests
- uses: codecov/codecov-action@eaaf4bedf32dbdc6b720b63067d99c4d77d6047d # @v2.1.0
coverage combine
coverage xml
- name: Run unit tests (reduced suite without coverage)
if: ${{ needs.changes.outputs.with_coverage == 'false' }}
env:
ONLY_PACKAGES: true
SPACK_TEST_SOLVER: clingo
run: |
share/spack/qa/run-unit-tests
- uses: codecov/codecov-action@81cd2dc8148241f03f5839d295e000b8f761e378 # @v2.1.0
if: ${{ needs.changes.outputs.with_coverage == 'true' }}
with:
flags: unittests,linux,clingo
# Run unit tests on MacOS
macos:
build:
needs: [ validate, style, changes ]
runs-on: macos-latest
strategy:
matrix:
python-version: ["3.11"]
python-version: [3.8]
steps:
- uses: actions/checkout@b4ffde65f46336ab88eb53be808477a3936bae11 # @v2
- uses: actions/checkout@2541b1294d2704b0964813337f33b291d3f8596b # @v2
with:
fetch-depth: 0
- uses: actions/setup-python@65d7f2d534ac1bc67fcd62888c5f4f3d2cb2b236 # @v2
- uses: actions/setup-python@98f2ad02fd48d057ee3b4d4f66525b231c3e52b6 # @v2
with:
python-version: ${{ matrix.python-version }}
- name: Install Python packages
run: |
pip install --upgrade pip setuptools
pip install --upgrade pytest coverage[toml] pytest-xdist pytest-cov
pip install --upgrade pip six setuptools
pip install --upgrade pytest codecov coverage[toml]==6.2
- name: Setup Homebrew packages
run: |
brew install dash fish gcc gnupg2 kcov
- name: Run unit tests
env:
SPACK_TEST_SOLVER: clingo
SPACK_TEST_PARALLEL: 4
run: |
git --version
. .github/workflows/setup_git.sh
. share/spack/setup-env.sh
$(which spack) bootstrap disable spack-install
$(which spack) bootstrap untrust spack-install
$(which spack) solve zlib
common_args=(--dist loadfile --tx '4*popen//python=./bin/spack-tmpconfig python -u ./bin/spack python' -x)
$(which spack) unit-test --cov --cov-config=pyproject.toml --cov-report=xml:coverage.xml "${common_args[@]}"
- uses: codecov/codecov-action@eaaf4bedf32dbdc6b720b63067d99c4d77d6047d
if [ "${{ needs.changes.outputs.with_coverage }}" == "true" ]
then
coverage run $(which spack) unit-test -x
coverage combine
coverage xml
# Delete the symlink going from ./lib/spack/docs/_spack_root back to
# the initial directory, since it causes ELOOP errors with codecov/actions@2
rm lib/spack/docs/_spack_root
else
echo "ONLY PACKAGE RECIPES CHANGED [skipping coverage]"
$(which spack) unit-test -x -m "not maybeslow" -k "package_sanity"
fi
- uses: codecov/codecov-action@81cd2dc8148241f03f5839d295e000b8f761e378 # @v2.1.0
if: ${{ needs.changes.outputs.with_coverage == 'true' }}
with:
files: ./coverage.xml
flags: unittests,macos
# Run audits on all the packages in the built-in repository
package-audits:
needs: [ validate, style, changes ]
runs-on: ubuntu-latest
steps:
- uses: actions/checkout@2541b1294d2704b0964813337f33b291d3f8596b # @v2
- uses: actions/setup-python@98f2ad02fd48d057ee3b4d4f66525b231c3e52b6 # @v2
with:
python-version: '3.10'
- name: Install Python packages
run: |
pip install --upgrade pip six setuptools pytest codecov coverage[toml]==6.2
- name: Package audits (with coverage)
if: ${{ needs.changes.outputs.with_coverage == 'true' }}
run: |
. share/spack/setup-env.sh
coverage run $(which spack) audit packages
coverage combine
coverage xml
- name: Package audits (wwithout coverage)
if: ${{ needs.changes.outputs.with_coverage == 'false' }}
run: |
. share/spack/setup-env.sh
$(which spack) audit packages
- uses: codecov/codecov-action@81cd2dc8148241f03f5839d295e000b8f761e378 # @v2.1.0
if: ${{ needs.changes.outputs.with_coverage == 'true' }}
with:
flags: unittests,linux,audits

View File

@@ -1,88 +0,0 @@
name: style
on:
workflow_call:
inputs:
with_coverage:
required: true
type: string
concurrency:
group: style-${{github.ref}}-${{github.event.pull_request.number || github.run_number}}
cancel-in-progress: true
jobs:
# Validate that the code can be run on all the Python versions
# supported by Spack
validate:
runs-on: ubuntu-latest
steps:
- uses: actions/checkout@b4ffde65f46336ab88eb53be808477a3936bae11
- uses: actions/setup-python@65d7f2d534ac1bc67fcd62888c5f4f3d2cb2b236
with:
python-version: '3.11'
cache: 'pip'
- name: Install Python Packages
run: |
pip install --upgrade pip setuptools
pip install -r .github/workflows/style/requirements.txt
- name: vermin (Spack's Core)
run: vermin --backport importlib --backport argparse --violations --backport typing -t=3.6- -vvv lib/spack/spack/ lib/spack/llnl/ bin/
- name: vermin (Repositories)
run: vermin --backport importlib --backport argparse --violations --backport typing -t=3.6- -vvv var/spack/repos
# Run style checks on the files that have been changed
style:
runs-on: ubuntu-latest
steps:
- uses: actions/checkout@b4ffde65f46336ab88eb53be808477a3936bae11
with:
fetch-depth: 0
- uses: actions/setup-python@65d7f2d534ac1bc67fcd62888c5f4f3d2cb2b236
with:
python-version: '3.11'
cache: 'pip'
- name: Install Python packages
run: |
pip install --upgrade pip setuptools
pip install -r .github/workflows/style/requirements.txt
- name: Setup git configuration
run: |
# Need this for the git tests to succeed.
git --version
. .github/workflows/setup_git.sh
- name: Run style tests
run: |
share/spack/qa/run-style-tests
audit:
uses: ./.github/workflows/audit.yaml
with:
with_coverage: ${{ inputs.with_coverage }}
python_version: '3.11'
# Check that spack can bootstrap the development environment on Python 3.6 - RHEL8
bootstrap-dev-rhel8:
runs-on: ubuntu-latest
container: registry.access.redhat.com/ubi8/ubi
steps:
- name: Install dependencies
run: |
dnf install -y \
bzip2 curl file gcc-c++ gcc gcc-gfortran git gnupg2 gzip \
make patch tcl unzip which xz
- uses: actions/checkout@b4ffde65f46336ab88eb53be808477a3936bae11 # @v2
- name: Setup repo and non-root user
run: |
git --version
git config --global --add safe.directory /__w/spack/spack
git fetch --unshallow
. .github/workflows/setup_git.sh
useradd spack-test
chown -R spack-test .
- name: Bootstrap Spack development environment
shell: runuser -u spack-test -- bash {0}
run: |
source share/spack/setup-env.sh
spack debug report
spack -d bootstrap now --dev
spack style -t black
spack unit-test -V

View File

@@ -1,79 +1,188 @@
name: windows
name: windows tests
on:
workflow_call:
concurrency:
group: windows-${{github.ref}}-${{github.event.pull_request.number || github.run_number}}
cancel-in-progress: true
push:
branches:
- develop
- releases/**
pull_request:
branches:
- develop
- releases/**
defaults:
run:
shell:
powershell Invoke-Expression -Command "./share/spack/qa/windows_test_setup.ps1"; {0}
powershell Invoke-Expression -Command ".\share\spack\qa\windows_test_setup.ps1"; {0}
jobs:
unit-tests:
validate:
runs-on: windows-latest
steps:
- uses: actions/checkout@b4ffde65f46336ab88eb53be808477a3936bae11
- uses: actions/checkout@2541b1294d2704b0964813337f33b291d3f8596b
- uses: actions/setup-python@98f2ad02fd48d057ee3b4d4f66525b231c3e52b6
with:
python-version: 3.9
- name: Install Python Packages
run: |
python -m pip install --upgrade pip
python -m pip install --upgrade vermin
- name: vermin (Spack's Core)
run: vermin --backport argparse --backport typing -t='2.7-' -t='3.5-' -v spack/lib/spack/spack/ spack/lib/spack/llnl/ spack/bin/
- name: vermin (Repositories)
run: vermin --backport argparse --backport typing -t='2.7-' -t='3.5-' -v spack/var/spack/repos
# Run style checks on the files that have been changed
style:
runs-on: windows-latest
steps:
- uses: actions/checkout@2541b1294d2704b0964813337f33b291d3f8596b
with:
fetch-depth: 0
- uses: actions/setup-python@65d7f2d534ac1bc67fcd62888c5f4f3d2cb2b236
- uses: actions/setup-python@98f2ad02fd48d057ee3b4d4f66525b231c3e52b6
with:
python-version: 3.9
- name: Install Python packages
run: |
python -m pip install --upgrade pip pywin32 setuptools pytest-cov clingo
python -m pip install --upgrade pip six setuptools flake8 isort>=4.3.5 mypy>=0.800 black pywin32 types-python-dateutil
- name: Create local develop
run: |
./.github/workflows/setup_git.ps1
.\spack\.github\workflows\setup_git.ps1
- name: Run style tests
run: |
spack style
- name: Verify license headers
run: |
python spack\bin\spack license verify
unittest:
needs: [ validate, style ]
runs-on: windows-latest
steps:
- uses: actions/checkout@2541b1294d2704b0964813337f33b291d3f8596b
with:
fetch-depth: 0
- uses: actions/setup-python@98f2ad02fd48d057ee3b4d4f66525b231c3e52b6
with:
python-version: 3.9
- name: Install Python packages
run: |
python -m pip install --upgrade pip six pywin32 setuptools codecov coverage
- name: Create local develop
run: |
.\spack\.github\workflows\setup_git.ps1
- name: Unit Test
run: |
spack unit-test -x --verbose --cov --cov-config=pyproject.toml --ignore=lib/spack/spack/test/cmd
./share/spack/qa/validate_last_exit.ps1
coverage combine -a
coverage xml
- uses: codecov/codecov-action@eaaf4bedf32dbdc6b720b63067d99c4d77d6047d
with:
flags: unittests,windows
unit-tests-cmd:
echo F|xcopy .\spack\share\spack\qa\configuration\windows_config.yaml $env:USERPROFILE\.spack\windows\config.yaml
spack unit-test --verbose --ignore=lib/spack/spack/test/cmd
unittest-cmd:
needs: [ validate, style ]
runs-on: windows-latest
steps:
- uses: actions/checkout@b4ffde65f46336ab88eb53be808477a3936bae11
- uses: actions/checkout@2541b1294d2704b0964813337f33b291d3f8596b
with:
fetch-depth: 0
- uses: actions/setup-python@65d7f2d534ac1bc67fcd62888c5f4f3d2cb2b236
- uses: actions/setup-python@98f2ad02fd48d057ee3b4d4f66525b231c3e52b6
with:
python-version: 3.9
- name: Install Python packages
run: |
python -m pip install --upgrade pip pywin32 setuptools coverage pytest-cov clingo
python -m pip install --upgrade pip six pywin32 setuptools codecov coverage
- name: Create local develop
run: |
./.github/workflows/setup_git.ps1
.\spack\.github\workflows\setup_git.ps1
- name: Command Unit Test
run: |
spack unit-test -x --verbose --cov --cov-config=pyproject.toml lib/spack/spack/test/cmd
./share/spack/qa/validate_last_exit.ps1
coverage combine -a
coverage xml
- uses: codecov/codecov-action@eaaf4bedf32dbdc6b720b63067d99c4d77d6047d
with:
flags: unittests,windows
build-abseil:
echo F|xcopy .\spack\share\spack\qa\configuration\windows_config.yaml $env:USERPROFILE\.spack\windows\config.yaml
spack unit-test lib/spack/spack/test/cmd --verbose
buildtest:
needs: [ validate, style ]
runs-on: windows-latest
steps:
- uses: actions/checkout@b4ffde65f46336ab88eb53be808477a3936bae11
- uses: actions/checkout@2541b1294d2704b0964813337f33b291d3f8596b
with:
fetch-depth: 0
- uses: actions/setup-python@65d7f2d534ac1bc67fcd62888c5f4f3d2cb2b236
- uses: actions/setup-python@98f2ad02fd48d057ee3b4d4f66525b231c3e52b6
with:
python-version: 3.9
- name: Install Python packages
run: |
python -m pip install --upgrade pip pywin32 setuptools coverage
python -m pip install --upgrade pip six pywin32 setuptools codecov coverage
- name: Build Test
run: |
spack compiler find
spack -d external find cmake ninja
spack -d install abseil-cpp
echo F|xcopy .\spack\share\spack\qa\configuration\windows_config.yaml $env:USERPROFILE\.spack\windows\config.yaml
spack external find cmake
spack external find ninja
spack install abseil-cpp
generate-installer-test:
needs: [ validate, style ]
runs-on: windows-latest
steps:
- name: Disable Windows Symlinks
run: |
git config --global core.symlinks false
shell:
powershell
- uses: actions/checkout@2541b1294d2704b0964813337f33b291d3f8596b
with:
fetch-depth: 0
- uses: actions/setup-python@98f2ad02fd48d057ee3b4d4f66525b231c3e52b6
with:
python-version: 3.9
- name: Install Python packages
run: |
python -m pip install --upgrade pip six pywin32 setuptools codecov coverage
- name: Add Light and Candle to Path
run: |
$env:WIX >> $GITHUB_PATH
- name: Run Installer
run: |
.\spack\share\spack\qa\setup_spack.ps1
spack make-installer -s spack -g SILENT pkg
echo "installer_root=$((pwd).Path)" | Out-File -FilePath $Env:GITHUB_ENV -Encoding utf8 -Append
env:
ProgressPreference: SilentlyContinue
- uses: actions/upload-artifact@3cea5372237819ed00197afe530f5a7ea3e805c8
with:
name: Windows Spack Installer Bundle
path: ${{ env.installer_root }}\pkg\Spack.exe
- uses: actions/upload-artifact@3cea5372237819ed00197afe530f5a7ea3e805c8
with:
name: Windows Spack Installer
path: ${{ env.installer_root}}\pkg\Spack.msi
execute-installer:
needs: generate-installer-test
runs-on: windows-latest
defaults:
run:
shell: pwsh
steps:
- uses: actions/setup-python@98f2ad02fd48d057ee3b4d4f66525b231c3e52b6
with:
python-version: 3.9
- name: Install Python packages
run: |
python -m pip install --upgrade pip six pywin32 setuptools codecov coverage
- name: Setup installer directory
run: |
mkdir -p spack_installer
echo "spack_installer=$((pwd).Path)\spack_installer" | Out-File -FilePath $Env:GITHUB_ENV -Encoding utf8 -Append
- uses: actions/download-artifact@v3
with:
name: Windows Spack Installer Bundle
path: ${{ env.spack_installer }}
- name: Execute Bundled Installer
run: |
$proc = Start-Process ${{ env.spack_installer }}\spack.exe "/install /quiet" -Passthru
$handle = $proc.Handle # cache proc.Handle
$proc.WaitForExit();
$LASTEXITCODE
env:
ProgressPreference: SilentlyContinue
- uses: actions/download-artifact@v3
with:
name: Windows Spack Installer
path: ${{ env.spack_installer }}
- name: Execute MSI
run: |
$proc = Start-Process ${{ env.spack_installer }}\spack.msi "/quiet" -Passthru
$handle = $proc.Handle # cache proc.Handle
$proc.WaitForExit();
$LASTEXITCODE

View File

@@ -1,16 +1,10 @@
version: 2
build:
os: "ubuntu-22.04"
apt_packages:
- graphviz
tools:
python: "3.11"
sphinx:
configuration: lib/spack/docs/conf.py
fail_on_warning: true
python:
version: 3.7
install:
- requirements: lib/spack/docs/requirements.txt

View File

@@ -1,922 +1,3 @@
# v0.21.3 (2024-10-02)
## Bugfixes
- Forward compatibility with Spack 0.23 packages with language dependencies (#45205, #45191)
- Forward compatibility with `urllib` from Python 3.12.6+ (#46453, #46483)
- Bump `archspec` to 0.2.5-dev for better aarch64 and Windows support (#42854, #44005,
#45721, #46445)
- Support macOS Sequoia (#45018, #45127, #43862)
- CI and test maintenance (#42909, #42728, #46711, #41943, #43363)
# v0.21.2 (2024-03-01)
## Bugfixes
- Containerize: accommodate nested or pre-existing spack-env paths (#41558)
- Fix setup-env script, when going back and forth between instances (#40924)
- Fix using fully-qualified namespaces from root specs (#41957)
- Fix a bug when a required provider is requested for multiple virtuals (#42088)
- OCI buildcaches:
- only push in parallel when forking (#42143)
- use pickleable errors (#42160)
- Fix using sticky variants in externals (#42253)
- Fix a rare issue with conditional requirements and multi-valued variants (#42566)
## Package updates
- rust: add v1.75, rework a few variants (#41161,#41903)
- py-transformers: add v4.35.2 (#41266)
- mgard: fix OpenMP on AppleClang (#42933)
# v0.21.1 (2024-01-11)
## New features
- Add support for reading buildcaches created by Spack v0.22 (#41773)
## Bugfixes
- spack graph: fix coloring with environments (#41240)
- spack info: sort variants in --variants-by-name (#41389)
- Spec.format: error on old style format strings (#41934)
- ASP-based solver:
- fix infinite recursion when computing concretization errors (#41061)
- don't error for type mismatch on preferences (#41138)
- don't emit spurious debug output (#41218)
- Improve the error message for deprecated preferences (#41075)
- Fix MSVC preview version breaking clingo build on Windows (#41185)
- Fix multi-word aliases (#41126)
- Add a warning for unconfigured compiler (#41213)
- environment: fix an issue with deconcretization/reconcretization of specs (#41294)
- buildcache: don't error if a patch is missing, when installing from binaries (#41986)
- Multiple improvements to unit-tests (#41215,#41369,#41495,#41359,#41361,#41345,#41342,#41308,#41226)
## Package updates
- root: add a webgui patch to address security issue (#41404)
- BerkeleyGW: update source urls (#38218)
# v0.21.0 (2023-11-11)
`v0.21.0` is a major feature release.
## Features in this release
1. **Better error messages with condition chaining**
In v0.18, we added better error messages that could tell you what problem happened,
but they couldn't tell you *why* it happened. `0.21` adds *condition chaining* to the
solver, and Spack can now trace back through the conditions that led to an error and
build a tree of causes potential causes and where they came from. For example:
```console
$ spack solve hdf5 ^cmake@3.0.1
==> Error: concretization failed for the following reasons:
1. Cannot satisfy 'cmake@3.0.1'
2. Cannot satisfy 'cmake@3.0.1'
required because hdf5 ^cmake@3.0.1 requested from CLI
3. Cannot satisfy 'cmake@3.18:' and 'cmake@3.0.1
required because hdf5 ^cmake@3.0.1 requested from CLI
required because hdf5 depends on cmake@3.18: when @1.13:
required because hdf5 ^cmake@3.0.1 requested from CLI
4. Cannot satisfy 'cmake@3.12:' and 'cmake@3.0.1
required because hdf5 depends on cmake@3.12:
required because hdf5 ^cmake@3.0.1 requested from CLI
required because hdf5 ^cmake@3.0.1 requested from CLI
```
More details in #40173.
2. **OCI build caches**
You can now use an arbitrary [OCI](https://opencontainers.org) registry as a build
cache:
```console
$ spack mirror add my_registry oci://user/image # Dockerhub
$ spack mirror add my_registry oci://ghcr.io/haampie/spack-test # GHCR
$ spack mirror set --push --oci-username ... --oci-password ... my_registry # set login creds
$ spack buildcache push my_registry [specs...]
```
And you can optionally add a base image to get *runnable* images:
```console
$ spack buildcache push --base-image ubuntu:23.04 my_registry python
Pushed ... as [image]:python-3.11.2-65txfcpqbmpawclvtasuog4yzmxwaoia.spack
$ docker run --rm -it [image]:python-3.11.2-65txfcpqbmpawclvtasuog4yzmxwaoia.spack
```
This creates a container image from the Spack installations on the host system,
without the need to run `spack install` from a `Dockerfile` or `sif` file. It also
addresses the inconvenience of losing binaries of dependencies when `RUN spack
install` fails inside `docker build`.
Further, the container image layers and build cache tarballs are the same files. This
means that `spack install` and `docker pull` use the exact same underlying binaries.
If you previously used `spack install` inside of `docker build`, this feature helps
you save storage by a factor two.
More details in #38358.
3. **Multiple versions of build dependencies**
Increasingly, complex package builds require multiple versions of some build
dependencies. For example, Python packages frequently require very specific versions
of `setuptools`, `cython`, and sometimes different physics packages require different
versions of Python to build. The concretizer enforced that every solve was *unified*,
i.e., that there only be one version of every package. The concretizer now supports
"duplicate" nodes for *build dependencies*, but enforces unification through
transitive link and run dependencies. This will allow it to better resolve complex
dependency graphs in ecosystems like Python, and it also gets us very close to
modeling compilers as proper dependencies.
This change required a major overhaul of the concretizer, as well as a number of
performance optimizations. See #38447, #39621.
4. **Cherry-picking virtual dependencies**
You can now select only a subset of virtual dependencies from a spec that may provide
more. For example, if you want `mpich` to be your `mpi` provider, you can be explicit
by writing:
```
hdf5 ^[virtuals=mpi] mpich
```
Or, if you want to use, e.g., `intel-parallel-studio` for `blas` along with an external
`lapack` like `openblas`, you could write:
```
strumpack ^[virtuals=mpi] intel-parallel-studio+mkl ^[virtuals=lapack] openblas
```
The `virtuals=mpi` is an edge attribute, and dependency edges in Spack graphs now
track which virtuals they satisfied. More details in #17229 and #35322.
Note for packaging: in Spack 0.21 `spec.satisfies("^virtual")` is true if and only if
the package specifies `depends_on("virtual")`. This is different from Spack 0.20,
where depending on a provider implied depending on the virtual provided. See #41002
for an example where `^mkl` was being used to test for several `mkl` providers in a
package that did not depend on `mkl`.
5. **License directive**
Spack packages can now have license metadata, with the new `license()` directive:
```python
license("Apache-2.0")
```
Licenses use [SPDX identifiers](https://spdx.org/licenses), and you can use SPDX
expressions to combine them:
```python
license("Apache-2.0 OR MIT")
```
Like other directives in Spack, it's conditional, so you can handle complex cases like
Spack itself:
```python
license("LGPL-2.1", when="@:0.11")
license("Apache-2.0 OR MIT", when="@0.12:")
```
More details in #39346, #40598.
6. **`spack deconcretize` command**
We are getting close to having a `spack update` command for environments, but we're
not quite there yet. This is the next best thing. `spack deconcretize` gives you
control over what you want to update in an already concrete environment. If you have
an environment built with, say, `meson`, and you want to update your `meson` version,
you can run:
```console
spack deconcretize meson
```
and have everything that depends on `meson` rebuilt the next time you run `spack
concretize`. In a future Spack version, we'll handle all of this in a single command,
but for now you can use this to drop bits of your lockfile and resolve your
dependencies again. More in #38803.
7. **UI Improvements**
The venerable `spack info` command was looking shabby compared to the rest of Spack's
UI, so we reworked it to have a bit more flair. `spack info` now makes much better
use of terminal space and shows variants, their values, and their descriptions much
more clearly. Conditional variants are grouped separately so you can more easily
understand how packages are structured. More in #40998.
`spack checksum` now allows you to filter versions from your editor, or by version
range. It also notifies you about potential download URL changes. See #40403.
8. **Environments can include definitions**
Spack did not previously support using `include:` with The
[definitions](https://spack.readthedocs.io/en/latest/environments.html#spec-list-references)
section of an environment, but now it does. You can use this to curate lists of specs
and more easily reuse them across environments. See #33960.
9. **Aliases**
You can now add aliases to Spack commands in `config.yaml`, e.g. this might enshrine
your favorite args to `spack find` as `spack f`:
```yaml
config:
aliases:
f: find -lv
```
See #17229.
10. **Improved autoloading of modules**
Spack 0.20 was the first release to enable autoloading of direct dependencies in
module files.
The downside of this was that `module avail` and `module load` tab completion would
show users too many modules to choose from, and many users disabled generating
modules for dependencies through `exclude_implicits: true`. Further, it was
necessary to keep hashes in module names to avoid file name clashes.
In this release, you can start using `hide_implicits: true` instead, which exposes
only explicitly installed packages to the user, while still autoloading
dependencies. On top of that, you can safely use `hash_length: 0`, as this config
now only applies to the modules exposed to the user -- you don't have to worry about
file name clashes for hidden dependencies.
Note: for `tcl` this feature requires Modules 4.7 or higher
11. **Updated container labeling**
Nightly Docker images from the `develop` branch will now be tagged as `:develop` and
`:nightly`. The `:latest` tag is no longer associated with `:develop`, but with the
latest stable release. Releases will be tagged with `:{major}`, `:{major}.{minor}`
and `:{major}.{minor}.{patch}`. `ubuntu:18.04` has also been removed from the list of
generated Docker images, as it is no longer supported. See #40593.
## Other new commands and directives
* `spack env activate` without arguments now loads a `default` environment that you do
not have to create (#40756).
* `spack find -H` / `--hashes`: a new shortcut for piping `spack find` output to
other commands (#38663)
* Add `spack checksum --verify`, fix `--add` (#38458)
* New `default_args` context manager factors out common args for directives (#39964)
* `spack compiler find --[no]-mixed-toolchain` lets you easily mix `clang` and
`gfortran` on Linux (#40902)
## Performance improvements
* `spack external find` execution is now much faster (#39843)
* `spack location -i` now much faster on success (#40898)
* Drop redundant rpaths post install (#38976)
* ASP-based solver: avoid cycles in clingo using hidden directive (#40720)
* Fix multiple quadratic complexity issues in environments (#38771)
## Other new features of note
* archspec: update to v0.2.2, support for Sapphire Rapids, Power10, Neoverse V2 (#40917)
* Propagate variants across nodes that don't have that variant (#38512)
* Implement fish completion (#29549)
* Can now distinguish between source/binary mirror; don't ping mirror.spack.io as much (#34523)
* Improve status reporting on install (add [n/total] display) (#37903)
## Windows
This release has the best Windows support of any Spack release yet, with numerous
improvements and much larger swaths of tests passing:
* MSVC and SDK improvements (#37711, #37930, #38500, #39823, #39180)
* Windows external finding: update default paths; treat .bat as executable on Windows (#39850)
* Windows decompression: fix removal of intermediate file (#38958)
* Windows: executable/path handling (#37762)
* Windows build systems: use ninja and enable tests (#33589)
* Windows testing (#36970, #36972, #36973, #36840, #36977, #36792, #36834, #34696, #36971)
* Windows PowerShell support (#39118, #37951)
* Windows symlinking and libraries (#39933, #38599, #34701, #38578, #34701)
## Notable refactors
* User-specified flags take precedence over others in Spack compiler wrappers (#37376)
* Improve setup of build, run, and test environments (#35737, #40916)
* `make` is no longer a required system dependency of Spack (#40380)
* Support Python 3.12 (#40404, #40155, #40153)
* docs: Replace package list with packages.spack.io (#40251)
* Drop Python 2 constructs in Spack (#38720, #38718, #38703)
## Binary cache and stack updates
* e4s arm stack: duplicate and target neoverse v1 (#40369)
* Add macOS ML CI stacks (#36586)
* E4S Cray CI Stack (#37837)
* e4s cray: expand spec list (#38947)
* e4s cray sles ci: expand spec list (#39081)
## Removals, deprecations, and syntax changes
* ASP: targets, compilers and providers soft-preferences are only global (#31261)
* Parser: fix ambiguity with whitespace in version ranges (#40344)
* Module file generation is disabled by default; you'll need to enable it to use it (#37258)
* Remove deprecated "extra_instructions" option for containers (#40365)
* Stand-alone test feature deprecation postponed to v0.22 (#40600)
* buildcache push: make `--allow-root` the default and deprecate the option (#38878)
## Notable Bugfixes
* Bugfix: propagation of multivalued variants (#39833)
* Allow `/` in git versions (#39398)
* Fetch & patch: actually acquire stage lock, and many more issues (#38903)
* Environment/depfile: better escaping of targets with Git versions (#37560)
* Prevent "spack external find" to error out on wrong permissions (#38755)
* lmod: allow core compiler to be specified with a version range (#37789)
## Spack community stats
* 7,469 total packages, 303 new since `v0.20.0`
* 150 new Python packages
* 34 new R packages
* 353 people contributed to this release
* 336 committers to packages
* 65 committers to core
# v0.20.3 (2023-10-31)
## Bugfixes
- Fix a bug where `spack mirror set-url` would drop configured connection info (reverts #34210)
- Fix a minor issue with package hash computation for Python 3.12 (#40328)
# v0.20.2 (2023-10-03)
## Features in this release
Spack now supports Python 3.12 (#40155)
## Bugfixes
- Improve escaping in Tcl module files (#38375)
- Make repo cache work on repositories with zero mtime (#39214)
- Ignore errors for newer, incompatible buildcache version (#40279)
- Print an error when git is required, but missing (#40254)
- Ensure missing build dependencies get installed when using `spack install --overwrite` (#40252)
- Fix an issue where Spack freezes when the build process unexpectedly exits (#39015)
- Fix a bug where installation failures cause an unrelated `NameError` to be thrown (#39017)
- Fix an issue where Spack package versions would be incorrectly derived from git tags (#39414)
- Fix a bug triggered when file locking fails internally (#39188)
- Prevent "spack external find" to error out when a directory cannot be accessed (#38755)
- Fix multiple performance regressions in environments (#38771)
- Add more ignored modules to `pyproject.toml` for `mypy` (#38769)
# v0.20.1 (2023-07-10)
## Spack Bugfixes
- Spec removed from an environment where not actually removed if `--force` was not given (#37877)
- Speed-up module file generation (#37739)
- Hotfix for a few recipes that treat CMake as a link dependency (#35816)
- Fix re-running stand-alone test a second time, which was getting a trailing spurious failure (#37840)
- Fixed reading JSON manifest on Cray, reporting non-concrete specs (#37909)
- Fixed a few bugs when generating Dockerfiles from Spack (#37766,#37769)
- Fixed a few long-standing bugs when generating module files (#36678,#38347,#38465,#38455)
- Fixed issues with building Python extensions using an external Python (#38186)
- Fixed compiler removal from command line (#38057)
- Show external status as [e] (#33792)
- Backported `archspec` fixes (#37793)
- Improved a few error messages (#37791)
# v0.20.0 (2023-05-21)
`v0.20.0` is a major feature release.
## Features in this release
1. **`requires()` directive and enhanced package requirements**
We've added some more enhancements to requirements in Spack (#36286).
There is a new `requires()` directive for packages. `requires()` is the opposite of
`conflicts()`. You can use it to impose constraints on this package when certain
conditions are met:
```python
requires(
"%apple-clang",
when="platform=darwin",
msg="This package builds only with clang on macOS"
)
```
More on this in [the docs](
https://spack.rtfd.io/en/latest/packaging_guide.html#conflicts-and-requirements).
You can also now add a `when:` clause to `requires:` in your `packages.yaml`
configuration or in an environment:
```yaml
packages:
openmpi:
require:
- any_of: ["%gcc"]
when: "@:4.1.4"
message: "Only OpenMPI 4.1.5 and up can build with fancy compilers"
```
More details can be found [here](
https://spack.readthedocs.io/en/latest/build_settings.html#package-requirements)
2. **Exact versions**
Spack did not previously have a way to distinguish a version if it was a prefix of
some other version. For example, `@3.2` would match `3.2`, `3.2.1`, `3.2.2`, etc. You
can now match *exactly* `3.2` with `@=3.2`. This is useful, for example, if you need
to patch *only* the `3.2` version of a package. The new syntax is described in [the docs](
https://spack.readthedocs.io/en/latest/basic_usage.html#version-specifier).
Generally, when writing packages, you should prefer to use ranges like `@3.2` over
the specific versions, as this allows the concretizer more leeway when selecting
versions of dependencies. More details and recommendations are in the [packaging guide](
https://spack.readthedocs.io/en/latest/packaging_guide.html#ranges-versus-specific-versions).
See #36273 for full details on the version refactor.
3. **New testing interface**
Writing package tests is now much simpler with a new [test interface](
https://spack.readthedocs.io/en/latest/packaging_guide.html#stand-alone-tests).
Writing a test is now as easy as adding a method that starts with `test_`:
```python
class MyPackage(Package):
...
def test_always_fails(self):
"""use assert to always fail"""
assert False
def test_example(self):
"""run installed example"""
example = which(self.prefix.bin.example)
example()
```
You can use Python's native `assert` statement to implement your checks -- no more
need to fiddle with `run_test` or other test framework methods. Spack will
introspect the class and run `test_*` methods when you run `spack test`,
4. **More stable concretization**
* Now, `spack concretize` will *only* concretize the new portions of the environment
and will not change existing parts of an environment unless you specify `--force`.
This has always been true for `unify:false`, but not for `unify:true` and
`unify:when_possible` environments. Now it is true for all of them (#37438, #37681).
* The concretizer has a new `--reuse-deps` argument that *only* reuses dependencies.
That is, it will always treat the *roots* of your environment as it would with
`--fresh`. This allows you to upgrade just the roots of your environment while
keeping everything else stable (#30990).
5. **Weekly develop snapshot releases**
Since last year, we have maintained a buildcache of `develop` at
https://binaries.spack.io/develop, but the cache can grow to contain so many builds
as to be unwieldy. When we get a stable `develop` build, we snapshot the release and
add a corresponding tag the Spack repository. So, you can use a stack from a specific
day. There are now tags in the spack repository like:
* `develop-2023-05-14`
* `develop-2023-05-18`
that correspond to build caches like:
* https://binaries.spack.io/develop-2023-05-14/e4s
* https://binaries.spack.io/develop-2023-05-18/e4s
We plan to store these snapshot releases weekly.
6. **Specs in buildcaches can be referenced by hash.**
* Previously, you could run `spack buildcache list` and see the hashes in
buildcaches, but referring to them by hash would fail.
* You can now run commands like `spack spec` and `spack install` and refer to
buildcache hashes directly, e.g. `spack install /abc123` (#35042)
7. **New package and buildcache index websites**
Our public websites for searching packages have been completely revamped and updated.
You can check them out here:
* *Package Index*: https://packages.spack.io
* *Buildcache Index*: https://cache.spack.io
Both are searchable and more interactive than before. Currently major releases are
shown; UI for browsing `develop` snapshots is coming soon.
8. **Default CMake and Meson build types are now Release**
Spack has historically defaulted to building with optimization and debugging, but
packages like `llvm` can be enormous with debug turned on. Our default build type for
all Spack packages is now `Release` (#36679, #37436). This has a number of benefits:
* much smaller binaries;
* higher default optimization level; and
* defining `NDEBUG` disables assertions, which may lead to further speedups.
You can still get the old behavior back through requirements and package preferences.
## Other new commands and directives
* `spack checksum` can automatically add new versions to package (#24532)
* new command: `spack pkg grep` to easily search package files (#34388)
* New `maintainers` directive (#35083)
* Add `spack buildcache push` (alias to `buildcache create`) (#34861)
* Allow using `-j` to control the parallelism of concretization (#37608)
* Add `--exclude` option to 'spack external find' (#35013)
## Other new features of note
* editing: add higher-precedence `SPACK_EDITOR` environment variable
* Many YAML formatting improvements from updating `ruamel.yaml` to the latest version
supporting Python 3.6. (#31091, #24885, #37008).
* Requirements and preferences should not define (non-git) versions (#37687, #37747)
* Environments now store spack version/commit in `spack.lock` (#32801)
* User can specify the name of the `packages` subdirectory in repositories (#36643)
* Add container images supporting RHEL alternatives (#36713)
* make version(...) kwargs explicit (#36998)
## Notable refactors
* buildcache create: reproducible tarballs (#35623)
* Bootstrap most of Spack dependencies using environments (#34029)
* Split `satisfies(..., strict=True/False)` into two functions (#35681)
* spack install: simplify behavior when inside environments (#35206)
## Binary cache and stack updates
* Major simplification of CI boilerplate in stacks (#34272, #36045)
* Many improvements to our CI pipeline's reliability
## Removals, Deprecations, and disablements
* Module file generation is disabled by default; you'll need to enable it to use it (#37258)
* Support for Python 2 was deprecated in `v0.19.0` and has been removed. `v0.20.0` only
supports Python 3.6 and higher.
* Deprecated target names are no longer recognized by Spack. Use generic names instead:
* `graviton` is now `cortex_a72`
* `graviton2` is now `neoverse_n1`
* `graviton3` is now `neoverse_v1`
* `blacklist` and `whitelist` in module configuration were deprecated in `v0.19.0` and are
removed in this release. Use `exclude` and `include` instead.
* The `ignore=` parameter of the `extends()` directive has been removed. It was not used by
any builtin packages and is no longer needed to avoid conflicts in environment views (#35588).
* Support for the old YAML buildcache format has been removed. It was deprecated in `v0.19.0` (#34347).
* `spack find --bootstrap` has been removed. It was deprecated in `v0.19.0`. Use `spack
--bootstrap find` instead (#33964).
* `spack bootstrap trust` and `spack bootstrap untrust` are now removed, having been
deprecated in `v0.19.0`. Use `spack bootstrap enable` and `spack bootstrap disable`.
* The `--mirror-name`, `--mirror-url`, and `--directory` options to buildcache and
mirror commands were deprecated in `v0.19.0` and have now been removed. They have been
replaced by positional arguments (#37457).
* Deprecate `env:` as top level environment key (#37424)
* deprecate buildcache create --rel, buildcache install --allow-root (#37285)
* Support for very old perl-like spec format strings (e.g., `$_$@$%@+$+$=`) has been
removed (#37425). This was deprecated in in `v0.15` (#10556).
## Notable Bugfixes
* bugfix: don't fetch package metadata for unknown concrete specs (#36990)
* Improve package source code context display on error (#37655)
* Relax environment manifest filename requirements and lockfile identification criteria (#37413)
* `installer.py`: drop build edges of installed packages by default (#36707)
* Bugfix: package requirements with git commits (#35057, #36347)
* Package requirements: allow single specs in requirement lists (#36258)
* conditional variant values: allow boolean (#33939)
* spack uninstall: follow run/link edges on --dependents (#34058)
## Spack community stats
* 7,179 total packages, 499 new since `v0.19.0`
* 329 new Python packages
* 31 new R packages
* 336 people contributed to this release
* 317 committers to packages
* 62 committers to core
# v0.19.1 (2023-02-07)
### Spack Bugfixes
* `buildcache create`: make "file exists" less verbose (#35019)
* `spack mirror create`: don't change paths to urls (#34992)
* Improve error message for requirements (#33988)
* uninstall: fix accidental cubic complexity (#34005)
* scons: fix signature for `install_args` (#34481)
* Fix `combine_phase_logs` text encoding issues (#34657)
* Use a module-like object to propagate changes in the MRO, when setting build env (#34059)
* PackageBase should not define builder legacy attributes (#33942)
* Forward lookup of the "run_tests" attribute (#34531)
* Bugfix for timers (#33917, #33900)
* Fix path handling in prefix inspections (#35318)
* Fix libtool filter for Fujitsu compilers (#34916)
* Bug fix for duplicate rpath errors on macOS when creating build caches (#34375)
* FileCache: delete the new cache file on exception (#34623)
* Propagate exceptions from Spack python console (#34547)
* Tests: Fix a bug/typo in a `config_values.py` fixture (#33886)
* Various CI fixes (#33953, #34560, #34560, #34828)
* Docs: remove monitors and analyzers, typos (#34358, #33926)
* bump release version for tutorial command (#33859)
# v0.19.0 (2022-11-11)
`v0.19.0` is a major feature release.
## Major features in this release
1. **Package requirements**
Spack's traditional [package preferences](
https://spack.readthedocs.io/en/latest/build_settings.html#package-preferences)
are soft, but we've added hard requriements to `packages.yaml` and `spack.yaml`
(#32528, #32369). Package requirements use the same syntax as specs:
```yaml
packages:
libfabric:
require: "@1.13.2"
mpich:
require:
- one_of: ["+cuda", "+rocm"]
```
More details in [the docs](
https://spack.readthedocs.io/en/latest/build_settings.html#package-requirements).
2. **Environment UI Improvements**
* Fewer surprising modifications to `spack.yaml` (#33711):
* `spack install` in an environment will no longer add to the `specs:` list; you'll
need to either use `spack add <spec>` or `spack install --add <spec>`.
* Similarly, `spack uninstall` will not remove from your environment's `specs:`
list; you'll need to use `spack remove` or `spack uninstall --remove`.
This will make it easier to manage an environment, as there is clear separation
between the stack to be installed (`spack.yaml`/`spack.lock`) and which parts of
it should be installed (`spack install` / `spack uninstall`).
* `concretizer:unify:true` is now the default mode for new environments (#31787)
We see more users creating `unify:true` environments now. Users who need
`unify:false` can add it to their environment to get the old behavior. This will
concretize every spec in the environment independently.
* Include environment configuration from URLs (#29026, [docs](
https://spack.readthedocs.io/en/latest/environments.html#included-configurations))
You can now include configuration in your environment directly from a URL:
```yaml
spack:
include:
- https://github.com/path/to/raw/config/compilers.yaml
```
4. **Multiple Build Systems**
An increasing number of packages in the ecosystem need the ability to support
multiple build systems (#30738, [docs](
https://spack.readthedocs.io/en/latest/packaging_guide.html#multiple-build-systems)),
either across versions, across platforms, or within the same version of the software.
This has been hard to support through multiple inheritance, as methods from different
build system superclasses would conflict. `package.py` files can now define separate
builder classes with installation logic for different build systems, e.g.:
```python
class ArpackNg(CMakePackage, AutotoolsPackage):
build_system(
conditional("cmake", when="@0.64:"),
conditional("autotools", when="@:0.63"),
default="cmake",
)
class CMakeBuilder(spack.build_systems.cmake.CMakeBuilder):
def cmake_args(self):
pass
class Autotoolsbuilder(spack.build_systems.autotools.AutotoolsBuilder):
def configure_args(self):
pass
```
5. **Compiler and variant propagation**
Currently, compiler flags and variants are inconsistent: compiler flags set for a
package are inherited by its dependencies, while variants are not. We should have
these be consistent by allowing for inheritance to be enabled or disabled for both
variants and compiler flags.
Example syntax:
- `package ++variant`:
enabled variant that will be propagated to dependencies
- `package +variant`:
enabled variant that will NOT be propagated to dependencies
- `package ~~variant`:
disabled variant that will be propagated to dependencies
- `package ~variant`:
disabled variant that will NOT be propagated to dependencies
- `package cflags==-g`:
`cflags` will be propagated to dependencies
- `package cflags=-g`:
`cflags` will NOT be propagated to dependencies
Syntax for non-boolan variants is similar to compiler flags. More in the docs for
[variants](
https://spack.readthedocs.io/en/latest/basic_usage.html#variants) and [compiler flags](
https://spack.readthedocs.io/en/latest/basic_usage.html#compiler-flags).
6. **Enhancements to git version specifiers**
* `v0.18.0` added the ability to use git commits as versions. You can now use the
`git.` prefix to specify git tags or branches as versions. All of these are valid git
versions in `v0.19` (#31200):
```console
foo@abcdef1234abcdef1234abcdef1234abcdef1234 # raw commit
foo@git.abcdef1234abcdef1234abcdef1234abcdef1234 # commit with git prefix
foo@git.develop # the develop branch
foo@git.0.19 # use the 0.19 tag
```
* `v0.19` also gives you more control over how Spack interprets git versions, in case
Spack cannot detect the version from the git repository. You can suffix a git
version with `=<version>` to force Spack to concretize it as a particular version
(#30998, #31914, #32257):
```console
# use mybranch, but treat it as version 3.2 for version comparison
foo@git.mybranch=3.2
# use the given commit, but treat it as develop for version comparison
foo@git.abcdef1234abcdef1234abcdef1234abcdef1234=develop
```
More in [the docs](
https://spack.readthedocs.io/en/latest/basic_usage.html#version-specifier)
7. **Changes to Cray EX Support**
Cray machines have historically had their own "platform" within Spack, because we
needed to go through the module system to leverage compilers and MPI installations on
these machines. The Cray EX programming environment now provides standalone `craycc`
executables and proper `mpicc` wrappers, so Spack can treat EX machines like Linux
with extra packages (#29392).
We expect this to greatly reduce bugs, as external packages and compilers can now be
used by prefix instead of through modules. We will also no longer be subject to
reproducibility issues when modules change from Cray PE release to release and from
site to site. This also simplifies dealing with the underlying Linux OS on cray
systems, as Spack will properly model the machine's OS as either SuSE or RHEL.
8. **Improvements to tests and testing in CI**
* `spack ci generate --tests` will generate a `.gitlab-ci.yml` file that not only does
builds but also runs tests for built packages (#27877). Public GitHub pipelines now
also run tests in CI.
* `spack test run --explicit` will only run tests for packages that are explicitly
installed, instead of all packages.
9. **Experimental binding link model**
You can add a new option to `config.yaml` to make Spack embed absolute paths to
needed shared libraries in ELF executables and shared libraries on Linux (#31948, [docs](
https://spack.readthedocs.io/en/latest/config_yaml.html#shared-linking-bind)):
```yaml
config:
shared_linking:
type: rpath
bind: true
```
This can improve launch time at scale for parallel applications, and it can make
installations less susceptible to environment variables like `LD_LIBRARY_PATH`, even
especially when dealing with external libraries that use `RUNPATH`. You can think of
this as a faster, even higher-precedence version of `RPATH`.
## Other new features of note
* `spack spec` prints dependencies more legibly. Dependencies in the output now appear
at the *earliest* level of indentation possible (#33406)
* You can override `package.py` attributes like `url`, directly in `packages.yaml`
(#33275, [docs](
https://spack.readthedocs.io/en/latest/build_settings.html#assigning-package-attributes))
* There are a number of new architecture-related format strings you can use in Spack
configuration files to specify paths (#29810, [docs](
https://spack.readthedocs.io/en/latest/configuration.html#config-file-variables))
* Spack now supports bootstrapping Clingo on Windows (#33400)
* There is now support for an `RPATH`-like library model on Windows (#31930)
## Performance Improvements
* Major performance improvements for installation from binary caches (#27610, #33628,
#33636, #33608, #33590, #33496)
* Test suite can now be parallelized using `xdist` (used in GitHub Actions) (#32361)
* Reduce lock contention for parallel builds in environments (#31643)
## New binary caches and stacks
* We now build nearly all of E4S with `oneapi` in our buildcache (#31781, #31804,
#31804, #31803, #31840, #31991, #32117, #32107, #32239)
* Added 3 new machine learning-centric stacks to binary cache: `x86_64_v3`, CUDA, ROCm
(#31592, #33463)
## Removals and Deprecations
* Support for Python 3.5 is dropped (#31908). Only Python 2.7 and 3.6+ are officially
supported.
* This is the last Spack release that will support Python 2 (#32615). Spack `v0.19`
will emit a deprecation warning if you run it with Python 2, and Python 2 support will
soon be removed from the `develop` branch.
* `LD_LIBRARY_PATH` is no longer set by default by `spack load` or module loads.
Setting `LD_LIBRARY_PATH` in Spack environments/modules can cause binaries from
outside of Spack to crash, and Spack's own builds use `RPATH` and do not need
`LD_LIBRARY_PATH` set in order to run. If you still want the old behavior, you
can run these commands to configure Spack to set `LD_LIBRARY_PATH`:
```console
spack config add modules:prefix_inspections:lib64:[LD_LIBRARY_PATH]
spack config add modules:prefix_inspections:lib:[LD_LIBRARY_PATH]
```
* The `spack:concretization:[together|separately]` has been removed after being
deprecated in `v0.18`. Use `concretizer:unify:[true|false]`.
* `config:module_roots` is no longer supported after being deprecated in `v0.18`. Use
configuration in module sets instead (#28659, [docs](
https://spack.readthedocs.io/en/latest/module_file_support.html)).
* `spack activate` and `spack deactivate` are no longer supported, having been
deprecated in `v0.18`. Use an environment with a view instead of
activating/deactivating ([docs](
https://spack.readthedocs.io/en/latest/environments.html#configuration-in-spack-yaml)).
* The old YAML format for buildcaches is now deprecated (#33707). If you are using an
old buildcache with YAML metadata you will need to regenerate it with JSON metadata.
* `spack bootstrap trust` and `spack bootstrap untrust` are deprecated in favor of
`spack bootstrap enable` and `spack bootstrap disable` and will be removed in `v0.20`.
(#33600)
* The `graviton2` architecture has been renamed to `neoverse_n1`, and `graviton3`
is now `neoverse_v1`. Buildcaches using the old architecture names will need to be rebuilt.
* The terms `blacklist` and `whitelist` have been replaced with `include` and `exclude`
in all configuration files (#31569). You can use `spack config update` to
automatically fix your configuration files.
## Notable Bugfixes
* Permission setting on installation now handles effective uid properly (#19980)
* `buildable:true` for an MPI implementation now overrides `buildable:false` for `mpi` (#18269)
* Improved error messages when attempting to use an unconfigured compiler (#32084)
* Do not punish explicitly requested compiler mismatches in the solver (#30074)
* `spack stage`: add missing --fresh and --reuse (#31626)
* Fixes for adding build system executables like `cmake` to package scope (#31739)
* Bugfix for binary relocation with aliased strings produced by newer `binutils` (#32253)
## Spack community stats
* 6,751 total packages, 335 new since `v0.18.0`
* 141 new Python packages
* 89 new R packages
* 303 people contributed to this release
* 287 committers to packages
* 57 committers to core
# v0.18.1 (2022-07-19)
### Spack Bugfixes
* Fix several bugs related to bootstrapping (#30834,#31042,#31180)
* Fix a regression that was causing spec hashes to differ between
Python 2 and Python 3 (#31092)
* Fixed compiler flags for oneAPI and DPC++ (#30856)
* Fixed several issues related to concretization (#31142,#31153,#31170,#31226)
* Improved support for Cray manifest file and `spack external find` (#31144,#31201,#31173,#31186)
* Assign a version to openSUSE Tumbleweed according to the GLIBC version
in the system (#19895)
* Improved Dockerfile generation for `spack containerize` (#29741,#31321)
* Fixed a few bugs related to concurrent execution of commands (#31509,#31493,#31477)
### Package updates
* WarpX: add v22.06, fixed libs property (#30866,#31102)
* openPMD: add v0.14.5, update recipe for @develop (#29484,#31023)
# v0.18.0 (2022-05-28)
`v0.18.0` is a major feature release.
@@ -1118,15 +199,6 @@ Spack now supports Python 3.12 (#40155)
* 337 committers to packages
* 85 committers to core
# v0.17.3 (2022-07-14)
### Spack bugfixes
* Fix missing chgrp on symlinks in package installations (#30743)
* Allow having non-existing upstreams (#30744, #30746)
* Fix `spack stage` with custom paths (#30448)
* Fix failing call for `spack buildcache save-specfile` (#30637)
* Fix globbing in compiler wrapper (#30699)
# v0.17.2 (2022-04-13)

View File

@@ -27,53 +27,12 @@
# And here's the CITATION.cff format:
#
cff-version: 1.2.0
type: software
message: "If you are referencing Spack in a publication, please cite the paper below."
title: "The Spack Package Manager: Bringing Order to HPC Software Chaos"
abstract: >-
Large HPC centers spend considerable time supporting software for thousands of users, but the complexity of HPC software is quickly outpacing the capabilities of existing software management tools.
Scientific applications require specific versions of compilers, MPI, and other dependency libraries, so using a single, standard software stack is infeasible.
However, managing many configurations is difficult because the configuration space is combinatorial in size.
We introduce Spack, a tool used at Lawrence Livermore National Laboratory to manage this complexity.
Spack provides a novel, re- cursive specification syntax to invoke parametric builds of packages and dependencies.
It allows any number of builds to coexist on the same system, and it ensures that installed packages can find their dependencies, regardless of the environment.
We show through real-world use cases that Spack supports diverse and demanding applications, bringing order to HPC software chaos.
preferred-citation:
title: "The Spack Package Manager: Bringing Order to HPC Software Chaos"
type: conference-paper
url: "https://tgamblin.github.io/pubs/spack-sc15.pdf"
doi: "10.1145/2807591.2807623"
url: "https://github.com/spack/spack"
authors:
- family-names: "Gamblin"
given-names: "Todd"
- family-names: "LeGendre"
given-names: "Matthew"
- family-names: "Collette"
given-names: "Michael R."
- family-names: "Lee"
given-names: "Gregory L."
- family-names: "Moody"
given-names: "Adam"
- family-names: "de Supinski"
given-names: "Bronis R."
- family-names: "Futral"
given-names: "Scott"
conference:
name: "Supercomputing 2015 (SC15)"
city: "Austin"
region: "Texas"
country: "US"
date-start: 2015-11-15
date-end: 2015-11-20
month: 11
year: 2015
identifiers:
- description: "The concept DOI of the work."
type: doi
value: 10.1145/2807591.2807623
- description: "The DOE Document Release Number of the work"
type: other
value: "LLNL-CONF-669890"
authors:
- family-names: "Gamblin"
given-names: "Todd"
- family-names: "LeGendre"
@@ -88,3 +47,12 @@ authors:
given-names: "Bronis R."
- family-names: "Futral"
given-names: "Scott"
title: "The Spack Package Manager: Bringing Order to HPC Software Chaos"
conference:
name: "Supercomputing 2015 (SC15)"
city: "Austin"
region: "Texas"
country: "USA"
month: November 15-20
year: 2015
notes: LLNL-CONF-669890

View File

@@ -1,6 +1,6 @@
MIT License
Copyright (c) 2013-2023 LLNS, LLC and other Spack Project Developers.
Copyright (c) 2013-2022 LLNS, LLC and other Spack Project Developers.
Permission is hereby granted, free of charge, to any person obtaining a copy
of this software and associated documentation files (the "Software"), to deal

View File

@@ -2,12 +2,11 @@
[![Unit Tests](https://github.com/spack/spack/workflows/linux%20tests/badge.svg)](https://github.com/spack/spack/actions)
[![Bootstrapping](https://github.com/spack/spack/actions/workflows/bootstrap.yml/badge.svg)](https://github.com/spack/spack/actions/workflows/bootstrap.yml)
[![macOS Builds (nightly)](https://github.com/spack/spack/workflows/macOS%20builds%20nightly/badge.svg?branch=develop)](https://github.com/spack/spack/actions?query=workflow%3A%22macOS+builds+nightly%22)
[![codecov](https://codecov.io/gh/spack/spack/branch/develop/graph/badge.svg)](https://codecov.io/gh/spack/spack)
[![Containers](https://github.com/spack/spack/actions/workflows/build-containers.yml/badge.svg)](https://github.com/spack/spack/actions/workflows/build-containers.yml)
[![Read the Docs](https://readthedocs.org/projects/spack/badge/?version=latest)](https://spack.readthedocs.io)
[![Code style: black](https://img.shields.io/badge/code%20style-black-000000.svg)](https://github.com/psf/black)
[![Slack](https://slack.spack.io/badge.svg)](https://slack.spack.io)
[![Matrix](https://img.shields.io/matrix/spack-space%3Amatrix.org?label=Matrix)](https://matrix.to/#/#spack-space:matrix.org)
Spack is a multi-platform package manager that builds and installs
multiple versions and configurations of software. It works on Linux,
@@ -63,10 +62,6 @@ Resources:
* **Slack workspace**: [spackpm.slack.com](https://spackpm.slack.com).
To get an invitation, visit [slack.spack.io](https://slack.spack.io).
* **Matrix space**: [#spack-space:matrix.org](https://matrix.to/#/#spack-space:matrix.org):
[bridged](https://github.com/matrix-org/matrix-appservice-slack#matrix-appservice-slack) to Slack.
* [**Github Discussions**](https://github.com/spack/spack/discussions):
not just for discussions, but also Q&A.
* **Mailing list**: [groups.google.com/d/forum/spack](https://groups.google.com/d/forum/spack)
* **Twitter**: [@spackpm](https://twitter.com/spackpm). Be sure to
`@mention` us!

View File

@@ -2,26 +2,24 @@
## Supported Versions
We provide security updates for `develop` and for the last two
stable (`0.x`) release series of Spack. Security updates will be
made available as patch (`0.x.1`, `0.x.2`, etc.) releases.
We provide security updates for the following releases.
For more on Spack's release structure, see
[`README.md`](https://github.com/spack/spack#releases).
| Version | Supported |
| ------- | ------------------ |
| develop | :white_check_mark: |
| 0.17.x | :white_check_mark: |
| 0.16.x | :white_check_mark: |
## Reporting a Vulnerability
You can report a vulnerability using GitHub's private reporting
feature:
To report a vulnerability or other security
issue, email maintainers@spack.io.
1. Go to [github.com/spack/spack/security](https://github.com/spack/spack/security).
2. Click "Report a vulnerability" in the upper right corner of that page.
3. Fill out the form and submit your draft security advisory.
More details are available in
[GitHub's docs](https://docs.github.com/en/code-security/security-advisories/guidance-on-reporting-and-writing/privately-reporting-a-security-vulnerability).
You can expect to hear back about security issues within two days.
If your security issue is accepted, we will do our best to release
a fix within a week. If fixing the issue will take longer than
this, we will discuss timeline options with you.
You can expect to hear back within two days.
If your security issue is accepted, we will do
our best to release a fix within a week. If
fixing the issue will take longer than this,
we will discuss timeline options with you.

View File

@@ -1,4 +1,4 @@
# Copyright 2013-2023 Lawrence Livermore National Security, LLC and other
# Copyright 2013-2021 Lawrence Livermore National Security, LLC and other
# Spack Project Developers. See the top-level COPYRIGHT file for details.
#
# SPDX-License-Identifier: (Apache-2.0 OR MIT)
@@ -8,12 +8,13 @@
def getpywin():
try:
import win32con # noqa: F401
import win32con # noqa
except ImportError:
print("pyWin32 not installed but is required...\nInstalling via pip:")
subprocess.check_call([sys.executable, "-m", "pip", "-q", "install", "--upgrade", "pip"])
subprocess.check_call([sys.executable, "-m", "pip", "-q", "install", "pywin32"])
subprocess.check_call(
[sys.executable, "-m", "pip", "-q", "install", "--upgrade", "pip"])
subprocess.check_call(
[sys.executable, "-m", "pip", "-q", "install", "pywin32"])
if __name__ == "__main__":
if __name__ == '__main__':
getpywin()

View File

@@ -1,6 +1,6 @@
#!/bin/sh
#
# Copyright 2013-2023 Lawrence Livermore National Security, LLC and other
# Copyright 2013-2021 Lawrence Livermore National Security, LLC and other
# sbang project developers. See the top-level COPYRIGHT file for details.
#
# SPDX-License-Identifier: (Apache-2.0 OR MIT)

View File

@@ -1,7 +1,7 @@
#!/bin/sh
# -*- python -*-
#
# Copyright 2013-2023 Lawrence Livermore National Security, LLC and other
# Copyright 2013-2022 Lawrence Livermore National Security, LLC and other
# Spack Project Developers. See the top-level COPYRIGHT file for details.
#
# SPDX-License-Identifier: (Apache-2.0 OR MIT)
@@ -25,15 +25,19 @@ exit 1
# Line above is a shell no-op, and ends a python multi-line comment.
# The code above runs this file with our preferred python interpreter.
from __future__ import print_function
import os
import os.path
import sys
min_python3 = (3, 6)
min_python3 = (3, 5)
if sys.version_info[:2] < min_python3:
if sys.version_info[:2] < (2, 7) or (
sys.version_info[:2] >= (3, 0) and sys.version_info[:2] < min_python3
):
v_info = sys.version_info[:3]
msg = "Spack requires Python %d.%d or higher " % min_python3
msg = "Spack requires Python 2.7 or %d.%d or higher " % min_python3
msg += "You are running spack with Python %d.%d.%d." % v_info
sys.exit(msg)
@@ -45,8 +49,50 @@ spack_prefix = os.path.dirname(os.path.dirname(spack_file))
spack_lib_path = os.path.join(spack_prefix, "lib", "spack")
sys.path.insert(0, spack_lib_path)
from spack_installable.main import main # noqa: E402
# Add external libs
spack_external_libs = os.path.join(spack_lib_path, "external")
if sys.version_info[:2] <= (2, 7):
sys.path.insert(0, os.path.join(spack_external_libs, "py2"))
sys.path.insert(0, spack_external_libs)
# Here we delete ruamel.yaml in case it has been already imported from site
# (see #9206 for a broader description of the issue).
#
# Briefly: ruamel.yaml produces a .pth file when installed with pip that
# makes the site installed package the preferred one, even though sys.path
# is modified to point to another version of ruamel.yaml.
if "ruamel.yaml" in sys.modules:
del sys.modules["ruamel.yaml"]
if "ruamel" in sys.modules:
del sys.modules["ruamel"]
# The following code is here to avoid failures when updating
# the develop version, due to spurious argparse.pyc files remaining
# in the libs/spack/external directory, see:
# https://github.com/spack/spack/pull/25376
# TODO: Remove in v0.18.0 or later
try:
import argparse
except ImportError:
argparse_pyc = os.path.join(spack_external_libs, 'argparse.pyc')
if not os.path.exists(argparse_pyc):
raise
try:
os.remove(argparse_pyc)
import argparse # noqa
except Exception:
msg = ('The file\n\n\t{0}\n\nis corrupted and cannot be deleted by Spack. '
'Either delete it manually or ask some administrator to '
'delete it for you.')
print(msg.format(argparse_pyc))
sys.exit(1)
import spack.main # noqa
# Once we've set up the system path, run the spack main method
if __name__ == "__main__":
sys.exit(main())
sys.exit(spack.main.main())

View File

@@ -1,6 +1,6 @@
#!/bin/sh
#
# Copyright 2013-2023 Lawrence Livermore National Security, LLC and other
# Copyright 2013-2022 Lawrence Livermore National Security, LLC and other
# Spack Project Developers. See the top-level COPYRIGHT file for details.
#
# SPDX-License-Identifier: (Apache-2.0 OR MIT)

View File

@@ -1,96 +0,0 @@
#!/bin/bash
set -euo pipefail
[[ -n "${TMPCONFIG_DEBUG:=}" ]] && set -x
DIR="$(cd -P "$(dirname "${BASH_SOURCE[0]}")" && pwd)"
mkdir -p "${XDG_RUNTIME_DIR:=/tmp}/spack-tests"
export TMPDIR="${XDG_RUNTIME_DIR}"
export TMP_DIR="$(mktemp -d -t spack-test-XXXXX)"
clean_up() {
[[ -n "$TMPCONFIG_DEBUG" ]] && printf "cleaning up: $TMP_DIR\n"
rm -rf "$TMP_DIR"
}
trap clean_up EXIT
trap clean_up ERR
[[ -n "$TMPCONFIG_DEBUG" ]] && printf "Redirecting TMP_DIR and spack directories to $TMP_DIR\n"
export BOOTSTRAP="${SPACK_USER_CACHE_PATH:=$HOME/.spack}/bootstrap"
export SPACK_USER_CACHE_PATH="$TMP_DIR/user_cache"
mkdir -p "$SPACK_USER_CACHE_PATH"
private_bootstrap="$SPACK_USER_CACHE_PATH/bootstrap"
use_spack=''
use_bwrap=''
# argument handling
while (($# >= 1)) ; do
case "$1" in
-b) # privatize bootstrap too, useful for CI but not always cheap
shift
export BOOTSTRAP="$private_bootstrap"
;;
-B) # use specified bootstrap dir
export BOOTSTRAP="$2"
shift 2
;;
-s) # run spack directly with remaining args
shift
use_spack=1
;;
--contain=bwrap)
if bwrap --help 2>&1 > /dev/null ; then
use_bwrap=1
else
echo Bubblewrap containment requested, but no bwrap command found
exit 1
fi
shift
;;
--)
shift
break
;;
*)
break
;;
esac
done
typeset -a CMD
if [[ -n "$use_spack" ]] ; then
CMD=("$DIR/spack" "$@")
else
CMD=("$@")
fi
mkdir -p "$BOOTSTRAP"
export SPACK_SYSTEM_CONFIG_PATH="$TMP_DIR/sys_conf"
export SPACK_USER_CONFIG_PATH="$TMP_DIR/user_conf"
mkdir -p "$SPACK_USER_CONFIG_PATH"
cat >"$SPACK_USER_CONFIG_PATH/config.yaml" <<EOF
config:
install_tree:
root: $TMP_DIR/install
misc_cache: $$user_cache_path/cache
source_cache: $$user_cache_path/source
environments_root: $TMP_DIR/envs
EOF
cat >"$SPACK_USER_CONFIG_PATH/bootstrap.yaml" <<EOF
bootstrap:
root: $BOOTSTRAP
EOF
if [[ -n "$use_bwrap" ]] ; then
CMD=(
bwrap
--dev-bind / /
--ro-bind "$DIR/.." "$DIR/.." # do not touch spack root
--ro-bind $HOME/.spack $HOME/.spack # do not touch user config/cache dir
--bind "$TMP_DIR" "$TMP_DIR"
--bind "$BOOTSTRAP" "$BOOTSTRAP"
--die-with-parent
"${CMD[@]}"
)
fi
(( ${TMPCONFIG_DEBUG:=0} > 1)) && echo "Running: ${CMD[@]}"
"${CMD[@]}"

View File

@@ -1,4 +1,4 @@
:: Copyright 2013-2023 Lawrence Livermore National Security, LLC and other
:: Copyright 2013-2021 Lawrence Livermore National Security, LLC and other
:: Spack Project Developers. See the top-level COPYRIGHT file for details.
::
:: SPDX-License-Identifier: (Apache-2.0 OR MIT)
@@ -14,7 +14,7 @@
::
@echo off
set spack="%SPACK_ROOT%"\bin\spack
set spack=%SPACK_ROOT%\bin\spack
::#######################################################################
:: This is a wrapper around the spack command that forwards calls to
@@ -50,48 +50,25 @@ setlocal enabledelayedexpansion
:: flags will always start with '-', e.g. --help or -V
:: subcommands will never start with '-'
:: everything after the subcommand is an arg
:process_cl_args
rem Set first cl argument (denoted by %1) to be processed
set t=%1
rem shift moves all cl positional arguments left by one
rem meaning %2 is now %1, this allows us to iterate over each
rem argument
shift
rem assign next "first" cl argument to cl_args, will be null when
rem there are now further arguments to process
set cl_args=%1
if "!t:~0,1!" == "-" (
if defined _sp_subcommand (
rem We already have a subcommand, processing args now
if not defined _sp_args (
set "_sp_args=!t!"
) else (
for %%x in (%*) do (
set t="%%~x"
if "!t:~0,1!" == "-" (
if defined _sp_subcommand (
:: We already have a subcommand, processing args now
set "_sp_args=!_sp_args! !t!"
)
) else (
if not defined _sp_flags (
set "_sp_flags=!t!"
) else (
set "_sp_flags=!_sp_flags! !t!"
shift
)
)
) else if not defined _sp_subcommand (
set "_sp_subcommand=!t!"
) else (
if not defined _sp_args (
set "_sp_args=!t!"
) else if not defined _sp_subcommand (
set "_sp_subcommand=!t!"
shift
) else (
set "_sp_args=!_sp_args! !t!"
shift
)
)
rem if this is not nu;ll, we have more tokens to process
rem start above process again with remaining unprocessed cl args
if defined cl_args goto :process_cl_args
:: --help, -h and -V flags don't require further output parsing.
:: If we encounter, execute and exit
if defined _sp_flags (
@@ -106,24 +83,24 @@ if defined _sp_flags (
exit /B 0
)
)
if not defined _sp_subcommand (
if not defined _sp_args (
if not defined _sp_flags (
python "%spack%" --help
exit /B 0
)
)
)
:: pass parsed variables outside of local scope. Need to do
:: this because delayedexpansion can only be set by setlocal
endlocal & (
set "_sp_flags=%_sp_flags%"
set "_sp_args=%_sp_args%"
set "_sp_subcommand=%_sp_subcommand%"
)
echo %_sp_flags%>flags
echo %_sp_args%>args
echo %_sp_subcommand%>subcmd
endlocal
set /p _sp_subcommand=<subcmd
set /p _sp_flags=<flags
set /p _sp_args=<args
set str_subcommand=%_sp_subcommand:"='%
set str_flags=%_sp_flags:"='%
set str_args=%_sp_args:"='%
if "%str_subcommand%"=="ECHO is off." (set "_sp_subcommand=")
if "%str_flags%"=="ECHO is off." (set "_sp_flags=")
if "%str_args%"=="ECHO is off." (set "_sp_args=")
del subcmd
del flags
del args
:: Filter out some commands. For any others, just run the command.
if "%_sp_subcommand%" == "cd" (
@@ -166,9 +143,7 @@ goto :end_switch
:: If no args or args contain --bat or -h/--help: just execute.
if NOT defined _sp_args (
goto :default_case
)
if NOT "%_sp_args%"=="%_sp_args:--help=%" (
)else if NOT "%_sp_args%"=="%_sp_args:--help=%" (
goto :default_case
) else if NOT "%_sp_args%"=="%_sp_args: -h=%" (
goto :default_case
@@ -176,11 +151,11 @@ if NOT "%_sp_args%"=="%_sp_args:--help=%" (
goto :default_case
) else if NOT "%_sp_args%"=="%_sp_args:deactivate=%" (
for /f "tokens=* USEBACKQ" %%I in (
`call python %spack% %_sp_flags% env deactivate --bat %_sp_args:deactivate=%`
`call python "%spack%" %_sp_flags% env deactivate --bat %_sp_args:deactivate=%`
) do %%I
) else if NOT "%_sp_args%"=="%_sp_args:activate=%" (
for /f "tokens=* USEBACKQ" %%I in (
`python %spack% %_sp_flags% env activate --bat %_sp_args:activate=%`
`call python "%spack%" %_sp_flags% env activate --bat %_sp_args:activate=%`
) do %%I
) else (
goto :default_case
@@ -192,7 +167,7 @@ goto :end_switch
if defined _sp_args (
if NOT "%_sp_args%"=="%_sp_args:--help=%" (
goto :default_case
) else if NOT "%_sp_args%"=="%_sp_args:-h=%" (
) else if NOT "%_sp_args%"=="%_sp_args: -h=%" (
goto :default_case
) else if NOT "%_sp_args%"=="%_sp_args:--bat=%" (
goto :default_case
@@ -201,7 +176,7 @@ if defined _sp_args (
for /f "tokens=* USEBACKQ" %%I in (
`python "%spack%" %_sp_flags% %_sp_subcommand% --bat %_sp_args%`) do %%I
)
goto :end_switch
:case_unload
@@ -239,10 +214,10 @@ for %%Z in ("%_pa_new_path%") do if EXIST %%~sZ\NUL (
exit /b 0
:: set module system roots
:_sp_multi_pathadd
:_sp_multi_pathadd
for %%I in (%~2) do (
for %%Z in (%_sp_compatible_sys_types%) do (
:pathadd "%~1" "%%I\%%Z"
)
)
exit /B %ERRORLEVEL%
exit /B %ERRORLEVEL%

View File

@@ -1,146 +0,0 @@
# Copyright 2013-2023 Lawrence Livermore National Security, LLC and other
# Spack Project Developers. See the top-level COPYRIGHT file for details.
# SPDX-License-Identifier: (Apache-2.0 OR MIT)
# #######################################################################
function Compare-CommonArgs {
$CMDArgs = $args[0]
# These aruments take precedence and call for no futher parsing of arguments
# invoke actual Spack entrypoint with that context and exit after
"--help", "-h", "--version", "-V" | ForEach-Object {
$arg_opt = $_
if(($CMDArgs) -and ([bool]($CMDArgs.Where({$_ -eq $arg_opt})))) {
return $true
}
}
return $false
}
function Read-SpackArgs {
$SpackCMD_params = @()
$SpackSubCommand = $NULL
$SpackSubCommandArgs = @()
$args_ = $args[0]
$args_ | ForEach-Object {
if (!$SpackSubCommand) {
if($_.SubString(0,1) -eq "-")
{
$SpackCMD_params += $_
}
else{
$SpackSubCommand = $_
}
}
else{
$SpackSubCommandArgs += $_
}
}
return $SpackCMD_params, $SpackSubCommand, $SpackSubCommandArgs
}
function Set-SpackEnv {
# This method is responsible
# for processing the return from $(spack <command>)
# which are returned as System.Object[]'s containing
# a list of env commands
# Invoke-Expression can only handle one command at a time
# so we iterate over the list to invoke the env modification
# expressions one at a time
foreach($envop in $args[0]){
Invoke-Expression $envop
}
}
function Invoke-SpackCD {
if (Compare-CommonArgs $SpackSubCommandArgs) {
python "$Env:SPACK_ROOT/bin/spack" cd -h
}
else {
$LOC = $(python "$Env:SPACK_ROOT/bin/spack" location $SpackSubCommandArgs)
if (($NULL -ne $LOC)){
if ( Test-Path -Path $LOC){
Set-Location $LOC
}
else{
exit 1
}
}
else {
exit 1
}
}
}
function Invoke-SpackEnv {
if (Compare-CommonArgs $SpackSubCommandArgs[0]) {
python "$Env:SPACK_ROOT/bin/spack" env -h
}
else {
$SubCommandSubCommand = $SpackSubCommandArgs[0]
$SubCommandSubCommandArgs = $SpackSubCommandArgs[1..$SpackSubCommandArgs.Count]
switch ($SubCommandSubCommand) {
"activate" {
if (Compare-CommonArgs $SubCommandSubCommandArgs) {
python "$Env:SPACK_ROOT/bin/spack" env activate $SubCommandSubCommandArgs
}
elseif ([bool]($SubCommandSubCommandArgs.Where({$_ -eq "--pwsh"}))) {
python "$Env:SPACK_ROOT/bin/spack" env activate $SubCommandSubCommandArgs
}
elseif (!$SubCommandSubCommandArgs) {
python "$Env:SPACK_ROOT/bin/spack" env activate $SubCommandSubCommandArgs
}
else {
$SpackEnv = $(python "$Env:SPACK_ROOT/bin/spack" $SpackCMD_params env activate "--pwsh" $SubCommandSubCommandArgs)
Set-SpackEnv $SpackEnv
}
}
"deactivate" {
if ([bool]($SubCommandSubCommandArgs.Where({$_ -eq "--pwsh"}))) {
python"$Env:SPACK_ROOT/bin/spack" env deactivate $SubCommandSubCommandArgs
}
elseif($SubCommandSubCommandArgs) {
python "$Env:SPACK_ROOT/bin/spack" env deactivate -h
}
else {
$SpackEnv = $(python "$Env:SPACK_ROOT/bin/spack" $SpackCMD_params env deactivate "--pwsh")
Set-SpackEnv $SpackEnv
}
}
default {python "$Env:SPACK_ROOT/bin/spack" $SpackCMD_params $SpackSubCommand $SpackSubCommandArgs}
}
}
}
function Invoke-SpackLoad {
if (Compare-CommonArgs $SpackSubCommandArgs) {
python "$Env:SPACK_ROOT/bin/spack" $SpackCMD_params $SpackSubCommand $SpackSubCommandArgs
}
elseif ([bool]($SpackSubCommandArgs.Where({($_ -eq "--pwsh") -or ($_ -eq "--list")}))) {
python "$Env:SPACK_ROOT/bin/spack" $SpackCMD_params $SpackSubCommand $SpackSubCommandArgs
}
else {
$SpackEnv = $(python "$Env:SPACK_ROOT/bin/spack" $SpackCMD_params $SpackSubCommand "--pwsh" $SpackSubCommandArgs)
Set-SpackEnv $SpackEnv
}
}
$SpackCMD_params, $SpackSubCommand, $SpackSubCommandArgs = Read-SpackArgs $args
if (Compare-CommonArgs $SpackCMD_params) {
python "$Env:SPACK_ROOT/bin/spack" $SpackCMD_params $SpackSubCommand $SpackSubCommandArgs
exit $LASTEXITCODE
}
# Process Spack commands with special conditions
# all other commands are piped directly to Spack
switch($SpackSubCommand)
{
"cd" {Invoke-SpackCD}
"env" {Invoke-SpackEnv}
"load" {Invoke-SpackLoad}
"unload" {Invoke-SpackLoad}
default {python "$Env:SPACK_ROOT/bin/spack" $SpackCMD_params $SpackSubCommand $SpackSubCommandArgs}
}

View File

@@ -52,6 +52,7 @@ if defined py_path (
if defined py_exe (
"%py_exe%" "%SPACK_ROOT%\bin\haspywin.py"
"%py_exe%" "%SPACK_ROOT%\bin\spack" external find python >NUL
)
set "EDITOR=notepad"

View File

@@ -1,4 +1,4 @@
# Copyright 2013-2023 Lawrence Livermore National Security, LLC and other
# Copyright 2013-2022 Lawrence Livermore National Security, LLC and other
# Spack Project Developers. See the top-level COPYRIGHT file for details.
#
# SPDX-License-Identifier: (Apache-2.0 OR MIT)

View File

@@ -9,15 +9,14 @@ bootstrap:
# may not be able to bootstrap all the software that Spack needs,
# depending on its type.
sources:
- name: 'github-actions-v0.5'
metadata: $spack/share/spack/bootstrap/github-actions-v0.5
- name: 'github-actions-v0.4'
metadata: $spack/share/spack/bootstrap/github-actions-v0.4
- name: 'github-actions-v0.2'
metadata: $spack/share/spack/bootstrap/github-actions-v0.2
- name: 'github-actions-v0.1'
metadata: $spack/share/spack/bootstrap/github-actions-v0.1
- name: 'spack-install'
metadata: $spack/share/spack/bootstrap/spack-install
trusted:
# By default we trust bootstrapping from sources and from binaries
# produced on Github via the workflow
github-actions-v0.5: true
github-actions-v0.4: true
github-actions-v0.2: true
spack-install: true

View File

@@ -13,18 +13,16 @@ concretizer:
# Whether to consider installed packages or packages from buildcaches when
# concretizing specs. If `true`, we'll try to use as many installs/binaries
# as possible, rather than building. If `false`, we'll always give you a fresh
# concretization. If `dependencies`, we'll only reuse dependencies but
# give you a fresh concretization for your root specs.
reuse: dependencies
# concretization.
reuse: true
# Options that tune which targets are considered for concretization. The
# concretization process is very sensitive to the number targets, and the time
# needed to reach a solution increases noticeably with the number of targets
# considered.
targets:
# Determine whether we want to target specific or generic
# microarchitectures. Valid values are: "microarchitectures" or "generic".
# An example of "microarchitectures" would be "skylake" or "bulldozer",
# while an example of "generic" would be "aarch64" or "x86_64_v4".
# Determine whether we want to target specific or generic microarchitectures.
# An example of the first kind might be for instance "skylake" or "bulldozer",
# while generic microarchitectures are for instance "aarch64" or "x86_64_v4".
granularity: microarchitectures
# If "false" allow targets that are incompatible with the current host (for
# instance concretize with target "icelake" while running on "haswell").
@@ -35,10 +33,4 @@ concretizer:
# environments can always be activated. When "false" perform concretization separately
# on each root spec, allowing different versions and variants of the same package in
# an environment.
unify: true
# Option to deal with possible duplicate nodes (i.e. different nodes from the same package) in the DAG.
duplicates:
# "none": allows a single node for any package in the DAG.
# "minimal": allows the duplication of 'build-tools' nodes only (e.g. py-setuptools, cmake etc.)
# "full" (experimental): allows separation of the entire build-tool stack (e.g. the entire "cmake" subDAG)
strategy: minimal
unify: false

View File

@@ -19,7 +19,7 @@ config:
install_tree:
root: $spack/opt/spack
projections:
all: "{architecture}/{compiler.name}-{compiler.version}/{name}-{version}-{hash}"
all: "${ARCHITECTURE}/${COMPILERNAME}-${COMPILERVER}/${PACKAGE}-${VERSION}-${HASH}"
# install_tree can include an optional padded length (int or boolean)
# default is False (do not pad)
# if padded_length is True, Spack will pad as close to the system max path
@@ -54,11 +54,6 @@ config:
# are that it precludes its use as a system package and its ability to be
# pip installable.
#
# In Spack environment files, chaining onto existing system Spack
# installations, the $env variable can be used to download, cache and build
# into user-writable paths that are relative to the currently active
# environment.
#
# In any case, if the username is not already in the path, Spack will append
# the value of `$user` in an attempt to avoid potential conflicts between
# users in shared temporary spaces.
@@ -81,10 +76,6 @@ config:
source_cache: $spack/var/spack/cache
## Directory where spack managed environments are created and stored
# environments_root: $spack/var/spack/environments
# Cache directory for miscellaneous files, like the package index.
# This can be purged with `spack clean --misc-cache`
misc_cache: $user_cache_path/cache
@@ -185,7 +176,7 @@ config:
# when Spack needs to manage its own package metadata and all operations are
# expected to complete within the default time limit. The timeout should
# therefore generally be left untouched.
db_lock_timeout: 60
db_lock_timeout: 3
# How long to wait when attempting to modify a package (e.g. to install it).
@@ -196,44 +187,17 @@ config:
package_lock_timeout: null
# Control how shared libraries are located at runtime on Linux. See the
# the Spack documentation for details.
shared_linking:
# Spack automatically embeds runtime search paths in ELF binaries for their
# dependencies. Their type can either be "rpath" or "runpath". For glibc, rpath is
# inherited and has precedence over LD_LIBRARY_PATH; runpath is not inherited
# and of lower precedence. DO NOT MIX these within the same install tree.
type: rpath
# (Experimental) Embed absolute paths of dependent libraries directly in ELF
# binaries to avoid runtime search. This can improve startup time of
# executables with many dependencies, in particular on slow filesystems.
bind: false
# Control whether Spack embeds RPATH or RUNPATH attributes in ELF binaries.
# Has no effect on macOS. DO NOT MIX these within the same install tree.
# See the Spack documentation for details.
shared_linking: 'rpath'
# Set to 'false' to allow installation on filesystems that doesn't allow setgid bit
# manipulation by unprivileged user (e.g. AFS)
allow_sgid: true
# Whether to show status information during building and installing packages.
# This gives information about Spack's current progress as well as the current
# and total number of packages. Information is shown both in the terminal
# title and inline.
install_status: true
# Number of seconds a buildcache's index.json is cached locally before probing
# for updates, within a single Spack invocation. Defaults to 10 minutes.
binary_index_ttl: 600
flags:
# Whether to keep -Werror flags active in package builds.
keep_werror: 'none'
# A mapping of aliases that can be used to define new commands. For instance,
# `sp: spec -I` will define a new command `sp` that will execute `spec` with
# the `-I` argument. Aliases cannot override existing commands.
aliases:
concretise: concretize
containerise: containerize
rm: remove
# Whether to set the terminal title to display status information during
# building and installing packages. This gives information about Spack's
# current progress as well as the current and total number of packages.
terminal_title: false

View File

@@ -13,4 +13,9 @@
# Per-user settings (overrides default and site settings):
# ~/.spack/modules.yaml
# -------------------------------------------------------------------------
modules: {}
modules:
prefix_inspections:
lib:
- LD_LIBRARY_PATH
lib64:
- LD_LIBRARY_PATH

View File

@@ -15,7 +15,7 @@
# -------------------------------------------------------------------------
modules:
prefix_inspections:
./lib:
lib:
- DYLD_FALLBACK_LIBRARY_PATH
./lib64:
lib64:
- DYLD_FALLBACK_LIBRARY_PATH

View File

@@ -23,20 +23,8 @@ packages:
providers:
elf: [libelf]
fuse: [macfuse]
gl: [apple-gl]
glu: [apple-glu]
unwind: [apple-libunwind]
uuid: [apple-libuuid]
apple-gl:
buildable: false
externals:
- spec: apple-gl@4.1.0
prefix: /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk
apple-glu:
buildable: false
externals:
- spec: apple-glu@1.3.0
prefix: /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk
apple-libunwind:
buildable: false
externals:

View File

@@ -13,4 +13,9 @@
# Per-user settings (overrides default and site settings):
# ~/.spack/modules.yaml
# -------------------------------------------------------------------------
modules: {}
modules:
prefix_inspections:
lib:
- LD_LIBRARY_PATH
lib64:
- LD_LIBRARY_PATH

View File

@@ -1,4 +1,2 @@
mirrors:
spack-public:
binary: false
url: https://mirror.spack.io
spack-public: https://mirror.spack.io

View File

@@ -14,24 +14,23 @@
# ~/.spack/modules.yaml
# -------------------------------------------------------------------------
modules:
# This maps paths in the package install prefix to environment variables
# they should be added to. For example, <prefix>/bin should be in PATH.
# Paths to check when creating modules for all module sets
prefix_inspections:
./bin:
bin:
- PATH
./man:
man:
- MANPATH
./share/man:
share/man:
- MANPATH
./share/aclocal:
share/aclocal:
- ACLOCAL_PATH
./lib/pkgconfig:
lib/pkgconfig:
- PKG_CONFIG_PATH
./lib64/pkgconfig:
lib64/pkgconfig:
- PKG_CONFIG_PATH
./share/pkgconfig:
share/pkgconfig:
- PKG_CONFIG_PATH
./:
'':
- CMAKE_PREFIX_PATH
# These are configurations for the module set named "default"
@@ -40,12 +39,13 @@ modules:
roots:
tcl: $spack/share/spack/modules
lmod: $spack/share/spack/lmod
# What type of modules to use ("tcl" and/or "lmod")
enable: []
# What type of modules to use
enable:
- tcl
tcl:
all:
autoload: direct
autoload: none
# Default configurations if lmod is enabled
lmod:

View File

@@ -20,36 +20,34 @@ packages:
awk: [gawk]
blas: [openblas, amdblis]
D: [ldc]
daal: [intel-oneapi-daal]
daal: [intel-daal]
elf: [elfutils]
fftw-api: [fftw, amdfftw]
flame: [libflame, amdlibflame]
fuse: [libfuse]
gl: [glx, osmesa]
gl: [mesa+opengl, mesa18, opengl]
glu: [mesa-glu, openglu]
golang: [go, gcc]
go-or-gccgo-bootstrap: [go-bootstrap, gcc]
glx: [mesa+glx, mesa18+glx, opengl]
golang: [gcc]
iconv: [libiconv]
ipp: [intel-oneapi-ipp]
ipp: [intel-ipp]
java: [openjdk, jdk, ibm-java]
jpeg: [libjpeg-turbo, libjpeg]
lapack: [openblas, amdlibflame]
libglx: [mesa+glx, mesa18+glx]
libllvm: [llvm]
libosmesa: [mesa+osmesa, mesa18+osmesa]
libllvm: [llvm, llvm-amdgpu]
lua-lang: [lua, lua-luajit-openresty, lua-luajit]
luajit: [lua-luajit-openresty, lua-luajit]
mariadb-client: [mariadb-c-client, mariadb]
mkl: [intel-oneapi-mkl]
mkl: [intel-mkl]
mpe: [mpe2]
mpi: [openmpi, mpich]
mysql-client: [mysql, mariadb-c-client]
opencl: [pocl]
onedal: [intel-oneapi-dal]
osmesa: [mesa+osmesa, mesa18+osmesa]
pbs: [openpbs, torque]
pil: [py-pillow]
pkgconfig: [pkgconf, pkg-config]
qmake: [qt-base, qt]
rpc: [libtirpc]
scalapack: [netlib-scalapack, amdscalapack]
sycl: [hipsycl]
@@ -60,7 +58,6 @@ packages:
xxd: [xxd-standalone, vim]
yacc: [bison, byacc]
ziglang: [zig]
zlib-api: [zlib-ng+compat, zlib]
permissions:
read: world
write: user

View File

@@ -1,6 +1,5 @@
config:
locks: false
concretizer: clingo
concretizer: original
build_stage::
- '$spack/.staging'
stage_name: '{name}-{version}-{hash:7}'

View File

@@ -1,22 +0,0 @@
# -------------------------------------------------------------------------
# This file controls default concretization preferences for Spack.
#
# Settings here are versioned with Spack and are intended to provide
# sensible defaults out of the box. Spack maintainers should edit this
# file to keep it current.
#
# Users can override these settings by editing the following files.
#
# Per-spack-instance settings (overrides defaults):
# $SPACK_ROOT/etc/spack/packages.yaml
#
# Per-user settings (overrides default and site settings):
# ~/.spack/packages.yaml
# -------------------------------------------------------------------------
packages:
all:
compiler:
- msvc
providers:
mpi: [msmpi]
gl: [wgl]

View File

@@ -1,7 +1,7 @@
package_list.html
command_index.rst
spack*.rst
llnl*.rst
_build
.spack-env
spack.lock
_spack_root

View File

@@ -1,16 +0,0 @@
# Copyright 2013-2023 Lawrence Livermore National Security, LLC and other
# Spack Project Developers. See the top-level COPYRIGHT file for details.
#
# SPDX-License-Identifier: (Apache-2.0 OR MIT)
# The name of the Pygments (syntax highlighting) style to use.
# We use our own extension of the default style with a few modifications
from pygments.styles.default import DefaultStyle
from pygments.token import Generic
class SpackStyle(DefaultStyle):
styles = DefaultStyle.styles.copy()
background_color = "#f4f4f8"
styles[Generic.Output] = "#355"
styles[Generic.Prompt] = "bold #346ec9"

1
lib/spack/docs/_spack_root Symbolic link
View File

@@ -0,0 +1 @@
../../..

162
lib/spack/docs/analyze.rst Normal file
View File

@@ -0,0 +1,162 @@
.. Copyright 2013-2022 Lawrence Livermore National Security, LLC and other
Spack Project Developers. See the top-level COPYRIGHT file for details.
SPDX-License-Identifier: (Apache-2.0 OR MIT)
.. _analyze:
=======
Analyze
=======
The analyze command is a front-end to various tools that let us analyze
package installations. Each analyzer is a module for a different kind
of analysis that can be done on a package installation, including (but not
limited to) binary, log, or text analysis. Thus, the analyze command group
allows you to take an existing package install, choose an analyzer,
and extract some output for the package using it.
-----------------
Analyzer Metadata
-----------------
For all analyzers, we write to an ``analyzers`` folder in ``~/.spack``, or the
value that you specify in your spack config at ``config:analyzers_dir``.
For example, here we see the results of running an analysis on zlib:
.. code-block:: console
$ tree ~/.spack/analyzers/
└── linux-ubuntu20.04-skylake
└── gcc-9.3.0
└── zlib-1.2.11-sl7m27mzkbejtkrajigj3a3m37ygv4u2
├── environment_variables
│   └── spack-analyzer-environment-variables.json
├── install_files
│   └── spack-analyzer-install-files.json
└── libabigail
└── spack-analyzer-libabigail-libz.so.1.2.11.xml
This means that you can always find analyzer output in this folder, and it
is organized with the same logic as the package install it was run for.
If you want to customize this top level folder, simply provide the ``--path``
argument to ``spack analyze run``. The nested organization will be maintained
within your custom root.
-----------------
Listing Analyzers
-----------------
If you aren't familiar with Spack's analyzers, you can quickly list those that
are available:
.. code-block:: console
$ spack analyze list-analyzers
install_files : install file listing read from install_manifest.json
environment_variables : environment variables parsed from spack-build-env.txt
config_args : config args loaded from spack-configure-args.txt
libabigail : Application Binary Interface (ABI) features for objects
In the above, the first three are fairly simple - parsing metadata files from
a package install directory to save
-------------------
Analyzing a Package
-------------------
The analyze command, akin to install, will accept a package spec to perform
an analysis for. The package must be installed. Let's walk through an example
with zlib. We first ask to analyze it. However, since we have more than one
install, we are asked to disambiguate:
.. code-block:: console
$ spack analyze run zlib
==> Error: zlib matches multiple packages.
Matching packages:
fz2bs56 zlib@1.2.11%gcc@7.5.0 arch=linux-ubuntu18.04-skylake
sl7m27m zlib@1.2.11%gcc@9.3.0 arch=linux-ubuntu20.04-skylake
Use a more specific spec.
We can then specify the spec version that we want to analyze:
.. code-block:: console
$ spack analyze run zlib/fz2bs56
If you don't provide any specific analyzer names, by default all analyzers
(shown in the ``list-analyzers`` subcommand list) will be run. If an analyzer does not
have any result, it will be skipped. For example, here is a result running for
zlib:
.. code-block:: console
$ ls ~/.spack/analyzers/linux-ubuntu20.04-skylake/gcc-9.3.0/zlib-1.2.11-sl7m27mzkbejtkrajigj3a3m37ygv4u2/
spack-analyzer-environment-variables.json
spack-analyzer-install-files.json
spack-analyzer-libabigail-libz.so.1.2.11.xml
If you want to run a specific analyzer, ask for it with `--analyzer`. Here we run
spack analyze on libabigail (already installed) _using_ libabigail1
.. code-block:: console
$ spack analyze run --analyzer abigail libabigail
.. _analyze_monitoring:
----------------------
Monitoring An Analysis
----------------------
For any kind of analysis, you can
use a `spack monitor <https://github.com/spack/spack-monitor>`_ "Spackmon"
as a server to upload the same run metadata to. You can
follow the instructions in the `spack monitor documentation <https://spack-monitor.readthedocs.org>`_
to first create a server along with a username and token for yourself.
You can then use this guide to interact with the server.
You should first export our spack monitor token and username to the environment:
.. code-block:: console
$ export SPACKMON_TOKEN=50445263afd8f67e59bd79bff597836ee6c05438
$ export SPACKMON_USER=spacky
By default, the host for your server is expected to be at ``http://127.0.0.1``
with a prefix of ``ms1``, and if this is the case, you can simply add the
``--monitor`` flag to the install command:
.. code-block:: console
$ spack analyze run --monitor wget
If you need to customize the host or the prefix, you can do that as well:
.. code-block:: console
$ spack analyze run --monitor --monitor-prefix monitor --monitor-host https://monitor-service.io wget
If your server doesn't have authentication, you can skip it:
.. code-block:: console
$ spack analyze run --monitor --monitor-disable-auth wget
Regardless of your choice, when you run analyze on an installed package (whether
it was installed with ``--monitor`` or not, you'll see the results generating as they did
before, and a message that the monitor server was pinged:
.. code-block:: console
$ spack analyze --monitor wget
...
==> Sending result for wget bin/wget to monitor.

View File

@@ -1,4 +1,4 @@
.. Copyright 2013-2023 Lawrence Livermore National Security, LLC and other
.. Copyright 2013-2022 Lawrence Livermore National Security, LLC and other
Spack Project Developers. See the top-level COPYRIGHT file for details.
SPDX-License-Identifier: (Apache-2.0 OR MIT)
@@ -45,8 +45,7 @@ Listing available packages
To install software with Spack, you need to know what software is
available. You can see a list of available package names at the
`packages.spack.io <https://packages.spack.io>`_ website, or
using the ``spack list`` command.
:ref:`package-list` webpage, or using the ``spack list`` command.
.. _cmd-spack-list:
@@ -61,7 +60,7 @@ can install:
:ellipsis: 10
There are thousands of them, so we've truncated the output above, but you
can find a `full list here <https://packages.spack.io>`_.
can find a :ref:`full list here <package-list>`.
Packages are listed by name in alphabetical order.
A pattern to match with no wildcards, ``*`` or ``?``,
will be treated as though it started and ended with
@@ -86,7 +85,7 @@ All packages whose names or descriptions contain documentation:
To get more information on a particular package from `spack list`, use
`spack info`. Just supply the name of a package:
.. command-output:: spack info --all mpich
.. command-output:: spack info mpich
Most of the information is self-explanatory. The *safe versions* are
versions that Spack knows the checksum for, and it will use the
@@ -897,8 +896,8 @@ your path:
$ which mpicc
~/spack/opt/linux-debian7-x86_64/gcc@4.4.7/mpich@3.0.4/bin/mpicc
These commands will add appropriate directories to your ``PATH``
and ``MANPATH`` according to the
These commands will add appropriate directories to your ``PATH``,
``MANPATH``, ``CPATH``, and ``LD_LIBRARY_PATH`` according to the
:ref:`prefix inspections <customize-env-modifications>` defined in your
modules configuration.
When you no longer want to use a package, you can type unload or
@@ -943,7 +942,7 @@ first ``libelf`` above, you would run:
$ spack load /qmm4kso
To see which packages that you have loaded to your environment you would
To see which packages that you have loaded to your enviornment you would
use ``spack find --loaded``.
.. code-block:: console
@@ -999,15 +998,11 @@ More formally, a spec consists of the following pieces:
* ``%`` Optional compiler specifier, with an optional compiler version
(``gcc`` or ``gcc@4.7.3``)
* ``+`` or ``-`` or ``~`` Optional variant specifiers (``+debug``,
``-qt``, or ``~qt``) for boolean variants. Use ``++`` or ``--`` or
``~~`` to propagate variants through the dependencies (``++debug``,
``--qt``, or ``~~qt``).
``-qt``, or ``~qt``) for boolean variants
* ``name=<value>`` Optional variant specifiers that are not restricted to
boolean variants. Use ``name==<value>`` to propagate variant through the
dependencies.
boolean variants
* ``name=<value>`` Optional compiler flag specifiers. Valid flag names are
``cflags``, ``cxxflags``, ``fflags``, ``cppflags``, ``ldflags``, and ``ldlibs``.
Use ``name==<value>`` to propagate compiler flags through the dependencies.
* ``target=<value> os=<value>`` Optional architecture specifier
(``target=haswell os=CNL10``)
* ``^`` Dependency specs (``^callpath@1.1``)
@@ -1098,73 +1093,26 @@ could depend on ``mpich@1.2:`` if it can only build with version
Below are more details about the specifiers that you can add to specs.
.. _version-specifier:
^^^^^^^^^^^^^^^^^
Version specifier
^^^^^^^^^^^^^^^^^
A version specifier ``pkg@<specifier>`` comes after a package name
and starts with ``@``. It can be something abstract that matches
multiple known versions, or a specific version. During concretization,
Spack will pick the optimal version within the spec's constraints
according to policies set for the particular Spack installation.
A version specifier comes somewhere after a package name and starts
with ``@``. It can be a single version, e.g. ``@1.0``, ``@3``, or
``@1.2a7``. Or, it can be a range of versions, such as ``@1.0:1.5``
(all versions between ``1.0`` and ``1.5``, inclusive). Version ranges
can be open, e.g. ``:3`` means any version up to and including ``3``.
This would include ``3.4`` and ``3.4.2``. ``4.2:`` means any version
above and including ``4.2``. Finally, a version specifier can be a
set of arbitrary versions, such as ``@1.0,1.5,1.7`` (``1.0``, ``1.5``,
or ``1.7``). When you supply such a specifier to ``spack install``,
it constrains the set of versions that Spack will install.
The version specifier can be *a specific version*, such as ``@=1.0.0`` or
``@=1.2a7``. Or, it can be *a range of versions*, such as ``@1.0:1.5``.
Version ranges are inclusive, so this example includes both ``1.0``
and any ``1.5.x`` version. Version ranges can be unbounded, e.g. ``@:3``
means any version up to and including ``3``. This would include ``3.4``
and ``3.4.2``. Similarly, ``@4.2:`` means any version above and including
``4.2``. As a short-hand, ``@3`` is equivalent to the range ``@3:3`` and
includes any version with major version ``3``.
Notice that you can distinguish between the specific version ``@=3.2`` and
the range ``@3.2``. This is useful for packages that follow a versioning
scheme that omits the zero patch version number: ``3.2``, ``3.2.1``,
``3.2.2``, etc. In general it is preferable to use the range syntax
``@3.2``, since ranges also match versions with one-off suffixes, such as
``3.2-custom``.
A version specifier can also be a list of ranges and specific versions,
separated by commas. For example, ``@1.0:1.5,=1.7.1`` matches any version
in the range ``1.0:1.5`` and the specific version ``1.7.1``.
For packages with a ``git`` attribute, ``git`` references
may be specified instead of a numerical version i.e. branches, tags
and commits. Spack will stage and build based off the ``git``
reference provided. Acceptable syntaxes for this are:
.. code-block:: sh
# commit hashes
foo@abcdef1234abcdef1234abcdef1234abcdef1234 # 40 character hashes are automatically treated as git commits
foo@git.abcdef1234abcdef1234abcdef1234abcdef1234
# branches and tags
foo@git.develop # use the develop branch
foo@git.0.19 # use the 0.19 tag
Spack always needs to associate a Spack version with the git reference,
which is used for version comparison. This Spack version is heuristically
taken from the closest valid git tag among ancestors of the git ref.
Once a Spack version is associated with a git ref, it always printed with
the git ref. For example, if the commit ``@git.abcdefg`` is tagged
``0.19``, then the spec will be shown as ``@git.abcdefg=0.19``.
If the git ref is not exactly a tag, then the distance to the nearest tag
is also part of the resolved version. ``@git.abcdefg=0.19.git.8`` means
that the commit is 8 commits away from the ``0.19`` tag.
In cases where Spack cannot resolve a sensible version from a git ref,
users can specify the Spack version to use for the git ref. This is done
by appending ``=`` and the Spack version to the git ref. For example:
.. code-block:: sh
foo@git.my_ref=3.2 # use the my_ref tag or branch, but treat it as version 3.2 for version comparisons
foo@git.abcdef1234abcdef1234abcdef1234abcdef1234=develop # use the given commit, but treat it as develop for version comparisons
If the version spec is not provided, then Spack will choose one
according to policies set for the particular spack installation. If
the spec is ambiguous, i.e. it could match multiple versions, Spack
will choose a version within the spec's constraints according to
policies set for the particular Spack installation.
Details about how versions are compared and how Spack determines if
one version is less than another are discussed in the developer guide.
@@ -1245,23 +1193,6 @@ variants using the backwards compatibility syntax and uses only ``~``
for disabled boolean variants. The ``-`` and spaces on the command
line are provided for convenience and legibility.
Spack allows variants to propagate their value to the package's
dependency by using ``++``, ``--``, and ``~~`` for boolean variants.
For example, for a ``debug`` variant:
.. code-block:: sh
mpileaks ++debug # enabled debug will be propagated to dependencies
mpileaks +debug # only mpileaks will have debug enabled
To propagate the value of non-boolean variants Spack uses ``name==value``.
For example, for the ``stackstart`` variant:
.. code-block:: sh
mpileaks stackstart==4 # variant will be propagated to dependencies
mpileaks stackstart=4 # only mpileaks will have this variant value
^^^^^^^^^^^^^^
Compiler Flags
^^^^^^^^^^^^^^
@@ -1269,15 +1200,10 @@ Compiler Flags
Compiler flags are specified using the same syntax as non-boolean variants,
but fulfill a different purpose. While the function of a variant is set by
the package, compiler flags are used by the compiler wrappers to inject
flags into the compile line of the build. Additionally, compiler flags can
be inherited by dependencies by using ``==``.
``spack install libdwarf cppflags=="-g"`` will install both libdwarf and
libelf with the ``-g`` flag injected into their compile line.
.. note::
versions of spack prior to 0.19.0 will propagate compiler flags using
the ``=`` syntax.
flags into the compile line of the build. Additionally, compiler flags are
inherited by dependencies. ``spack install libdwarf cppflags="-g"`` will
install both libdwarf and libelf with the ``-g`` flag injected into their
compile line.
Notice that the value of the compiler flags must be quoted if it
contains any spaces. Any of ``cppflags=-O3``, ``cppflags="-O3"``,
@@ -1479,7 +1405,7 @@ built.
You can see what virtual packages a particular package provides by
getting info on it:
.. command-output:: spack info --virtuals mpich
.. command-output:: spack info mpich
Spack is unique in that its virtual packages can be versioned, just
like regular packages. A particular version of a package may provide
@@ -1526,30 +1452,6 @@ any MPI implementation will do. If another package depends on
error. Likewise, if you try to plug in some package that doesn't
provide MPI, Spack will raise an error.
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
Explicit binding of virtual dependencies
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
There are packages that provide more than just one virtual dependency. When interacting with them, users
might want to utilize just a subset of what they could provide, and use other providers for virtuals they
need.
It is possible to be more explicit and tell Spack which dependency should provide which virtual, using a
special syntax:
.. code-block:: console
$ spack spec strumpack ^[virtuals=mpi] intel-parallel-studio+mkl ^[virtuals=lapack] openblas
Concretizing the spec above produces the following DAG:
.. figure:: images/strumpack_virtuals.svg
:scale: 60 %
:align: center
where ``intel-parallel-studio`` *could* provide ``mpi``, ``lapack``, and ``blas`` but is used only for the former. The ``lapack``
and ``blas`` dependencies are satisfied by ``openblas``.
^^^^^^^^^^^^^^^^^^^^^^^^
Specifying Specs by Hash
^^^^^^^^^^^^^^^^^^^^^^^^
@@ -1711,13 +1613,9 @@ own install prefix. However, certain packages are typically installed
`Python <https://www.python.org>`_ packages are typically installed in the
``$prefix/lib/python-2.7/site-packages`` directory.
In Spack, installation prefixes are immutable, so this type of installation
is not directly supported. However, it is possible to create views that
allow you to merge install prefixes of multiple packages into a single new prefix.
Views are a convenient way to get a more traditional filesystem structure.
Using *extensions*, you can ensure that Python packages always share the
same prefix in the view as Python itself. Suppose you have
Python installed like so:
Spack has support for this type of installation as well. In Spack,
a package that can live inside the prefix of another package is called
an *extension*. Suppose you have Python installed like so:
.. code-block:: console
@@ -1755,6 +1653,8 @@ You can find extensions for your Python installation like this:
py-ipython@2.3.1 py-pygments@2.0.1 py-setuptools@11.3.1
py-matplotlib@1.4.2 py-pyparsing@2.0.3 py-six@1.9.0
==> None activated.
The extensions are a subset of what's returned by ``spack list``, and
they are packages like any other. They are installed into their own
prefixes, and you can see this with ``spack find --paths``:
@@ -1782,72 +1682,32 @@ directly when you run ``python``:
ImportError: No module named numpy
>>>
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
Using Extensions in Environments
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
^^^^^^^^^^^^^^^^
Using Extensions
^^^^^^^^^^^^^^^^
The recommended way of working with extensions such as ``py-numpy``
above is through :ref:`Environments <environments>`. For example,
the following creates an environment in the current working directory
with a filesystem view in the ``./view`` directory:
.. code-block:: console
$ spack env create --with-view view --dir .
$ spack -e . add py-numpy
$ spack -e . concretize
$ spack -e . install
We recommend environments for two reasons. Firstly, environments
can be activated (requires :ref:`shell-support`):
.. code-block:: console
$ spack env activate .
which sets all the right environment variables such as ``PATH`` and
``PYTHONPATH``. This ensures that
.. code-block:: console
$ python
>>> import numpy
works. Secondly, even without shell support, the view ensures
that Python can locate its extensions:
.. code-block:: console
$ ./view/bin/python
>>> import numpy
See :ref:`environments` for a more in-depth description of Spack
environments and customizations to views.
^^^^^^^^^^^^^^^^^^^^
Using ``spack load``
^^^^^^^^^^^^^^^^^^^^
A more traditional way of using Spack and extensions is ``spack load``
(requires :ref:`shell-support`). This will add the extension to ``PYTHONPATH``
in your current shell, and Python itself will be available in the ``PATH``:
There are four ways to get ``numpy`` working in Python. The first is
to use :ref:`shell-support`. You can simply ``load`` the extension,
and it will be added to the ``PYTHONPATH`` in your current shell:
.. code-block:: console
$ spack load python
$ spack load py-numpy
$ python
>>> import numpy
Now ``import numpy`` will succeed for as long as you keep your current
session open.
The loaded packages can be checked using ``spack find --loaded``
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
Loading Extensions via Modules
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
Apart from ``spack env activate`` and ``spack load``, you can load numpy
through your environment modules (using ``environment-modules`` or
``lmod``). This will also add the extension to the ``PYTHONPATH`` in
your current shell.
Instead of using Spack's environment modification capabilities through
the ``spack load`` command, you can load numpy through your
environment modules (using ``environment-modules`` or ``lmod``). This
will also add the extension to the ``PYTHONPATH`` in your current
shell.
.. code-block:: console
@@ -1857,6 +1717,130 @@ If you do not know the name of the specific numpy module you wish to
load, you can use the ``spack module tcl|lmod loads`` command to get
the name of the module from the Spack spec.
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
Activating Extensions in a View
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
Another way to use extensions is to create a view, which merges the
python installation along with the extensions into a single prefix.
See :ref:`configuring_environment_views` for a more in-depth description
of views.
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
Activating Extensions Globally
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
As an alternative to creating a merged prefix with Python and its extensions,
and prior to support for views, Spack has provided a means to install the
extension into the Spack installation prefix for the extendee. This has
typically been useful since extendable packages typically search their own
installation path for addons by default.
Global activations are performed with the ``spack activate`` command:
.. _cmd-spack-activate:
^^^^^^^^^^^^^^^^^^
``spack activate``
^^^^^^^^^^^^^^^^^^
.. code-block:: console
$ spack activate py-numpy
==> Activated extension py-setuptools@11.3.1%gcc@4.4.7 arch=linux-debian7-x86_64-3c74eb69 for python@2.7.8%gcc@4.4.7.
==> Activated extension py-nose@1.3.4%gcc@4.4.7 arch=linux-debian7-x86_64-5f70f816 for python@2.7.8%gcc@4.4.7.
==> Activated extension py-numpy@1.9.1%gcc@4.4.7 arch=linux-debian7-x86_64-66733244 for python@2.7.8%gcc@4.4.7.
Several things have happened here. The user requested that
``py-numpy`` be activated in the ``python`` installation it was built
with. Spack knows that ``py-numpy`` depends on ``py-nose`` and
``py-setuptools``, so it activated those packages first. Finally,
once all dependencies were activated in the ``python`` installation,
``py-numpy`` was activated as well.
If we run ``spack extensions`` again, we now see the three new
packages listed as activated:
.. code-block:: console
$ spack extensions python
==> python@2.7.8%gcc@4.4.7 arch=linux-debian7-x86_64-703c7a96
==> 36 extensions:
geos py-ipython py-pexpect py-pyside py-sip
py-basemap py-libxml2 py-pil py-pytz py-six
py-biopython py-mako py-pmw py-rpy2 py-sympy
py-cython py-matplotlib py-pychecker py-scientificpython py-virtualenv
py-dateutil py-mpi4py py-pygments py-scikit-learn
py-epydoc py-mx py-pylint py-scipy
py-gnuplot py-nose py-pyparsing py-setuptools
py-h5py py-numpy py-pyqt py-shiboken
==> 12 installed:
-- linux-debian7-x86_64 / gcc@4.4.7 --------------------------------
py-dateutil@2.4.0 py-nose@1.3.4 py-pyside@1.2.2
py-dateutil@2.4.0 py-numpy@1.9.1 py-pytz@2014.10
py-ipython@2.3.1 py-pygments@2.0.1 py-setuptools@11.3.1
py-matplotlib@1.4.2 py-pyparsing@2.0.3 py-six@1.9.0
==> 3 currently activated:
-- linux-debian7-x86_64 / gcc@4.4.7 --------------------------------
py-nose@1.3.4 py-numpy@1.9.1 py-setuptools@11.3.1
Now, when a user runs python, ``numpy`` will be available for import
*without* the user having to explicitly load it. ``python@2.7.8`` now
acts like a system Python installation with ``numpy`` installed inside
of it.
Spack accomplishes this by symbolically linking the *entire* prefix of
the ``py-numpy`` package into the prefix of the ``python`` package. To the
python interpreter, it looks like ``numpy`` is installed in the
``site-packages`` directory.
The only limitation of global activation is that you can only have a *single*
version of an extension activated at a time. This is because multiple
versions of the same extension would conflict if symbolically linked
into the same prefix. Users who want a different version of a package
can still get it by using environment modules or views, but they will have to
explicitly load their preferred version.
^^^^^^^^^^^^^^^^^^^^^^^^^^
``spack activate --force``
^^^^^^^^^^^^^^^^^^^^^^^^^^
If, for some reason, you want to activate a package *without* its
dependencies, you can use ``spack activate --force``:
.. code-block:: console
$ spack activate --force py-numpy
==> Activated extension py-numpy@1.9.1%gcc@4.4.7 arch=linux-debian7-x86_64-66733244 for python@2.7.8%gcc@4.4.7.
.. _cmd-spack-deactivate:
^^^^^^^^^^^^^^^^^^^^
``spack deactivate``
^^^^^^^^^^^^^^^^^^^^
We've seen how activating an extension can be used to set up a default
version of a Python module. Obviously, you may want to change that at
some point. ``spack deactivate`` is the command for this. There are
several variants:
* ``spack deactivate <extension>`` will deactivate a single
extension. If another activated extension depends on this one,
Spack will warn you and exit with an error.
* ``spack deactivate --force <extension>`` deactivates an extension
regardless of packages that depend on it.
* ``spack deactivate --all <extension>`` deactivates an extension and
all of its dependencies. Use ``--force`` to disregard dependents.
* ``spack deactivate --all <extendee>`` deactivates *all* activated
extensions of a package. For example, to deactivate *all* python
extensions, use:
.. code-block:: console
$ spack deactivate --all python
-----------------------
Filesystem requirements
-----------------------

View File

@@ -1,4 +1,4 @@
.. Copyright 2013-2023 Lawrence Livermore National Security, LLC and other
.. Copyright 2013-2022 Lawrence Livermore National Security, LLC and other
Spack Project Developers. See the top-level COPYRIGHT file for details.
SPDX-License-Identifier: (Apache-2.0 OR MIT)
@@ -13,47 +13,49 @@ Some sites may encourage users to set up their own test environments
before carrying out central installations, or some users may prefer to set
up these environments on their own motivation. To reduce the load of
recompiling otherwise identical package specs in different installations,
installed packages can be put into build cache tarballs, pushed to
installed packages can be put into build cache tarballs, uploaded to
your Spack mirror and then downloaded and installed by others.
Whenever a mirror provides prebuilt packages, Spack will take these packages
into account during concretization and installation, making ``spack install``
significantly faster.
--------------------------
Creating build cache files
--------------------------
.. note::
We use the terms "build cache" and "mirror" often interchangeably. Mirrors
are used during installation both for sources and prebuilt packages. Build
caches refer to mirrors that provide prebuilt packages.
----------------------
Creating a build cache
----------------------
A compressed tarball of an installed package is created. Tarballs are created
for all of its link and run dependency packages as well. Compressed tarballs are
signed with gpg and signature and tarball and put in a ``.spack`` file. Optionally,
the rpaths (and ids and deps on macOS) can be changed to paths relative to
the Spack install tree before the tarball is created.
Build caches are created via:
.. code-block:: console
$ spack buildcache push <path/url/mirror name> <spec>
$ spack buildcache create <spec>
This command takes the locally installed spec and its dependencies, and
creates tarballs of their install prefixes. It also generates metadata files,
signed with GPG. These tarballs and metadata files are then pushed to the
provided binary cache, which can be a local directory or a remote URL.
Here is an example where a build cache is created in a local directory named
"spack-cache", to which we push the "ninja" spec:
If you wanted to create a build cache in a local directory, you would provide
the ``-d`` argument to target that directory, again also specifying the spec.
Here is an example creating a local directory, "spack-cache" and creating
build cache files for the "ninja" spec:
.. code-block:: console
$ spack buildcache push ./spack-cache ninja
==> Pushing binary packages to file:///home/spackuser/spack/spack-cache/build_cache
$ mkdir -p ./spack-cache
$ spack buildcache create -d ./spack-cache ninja
==> Buildcache files will be output to file:///home/spackuser/spack/spack-cache/build_cache
gpgconf: socketdir is '/run/user/1000/gnupg'
gpg: using "E6DF6A8BD43208E4D6F392F23777740B7DBD643D" as default secret key for signing
Note that ``ninja`` must be installed locally for this to work.
Note that the targeted spec must already be installed. Once you have a build cache,
you can add it as a mirror, discussed next.
Once you have a build cache, you can add it as a mirror, discussed next.
.. warning::
Spack improved the format used for binary caches in v0.18. The entire v0.18 series
will be able to verify and install binary caches both in the new and in the old format.
Support for using the old format is expected to end in v0.19, so we advise users to
recreate relevant buildcaches using Spack v0.18 or higher.
---------------------------------------
Finding or installing build cache files
@@ -64,10 +66,10 @@ with:
.. code-block:: console
$ spack mirror add <name> <url or path>
$ spack mirror add <name> <url>
Both web URLs and local paths on the filesystem can be specified. In the previous
Note that the url can be a web url _or_ a local filesystem location. In the previous
example, you might add the directory "spack-cache" and call it ``mymirror``:
@@ -92,7 +94,7 @@ this new build cache as follows:
.. code-block:: console
$ spack buildcache update-index ./spack-cache
$ spack buildcache update-index -d spack-cache/
Now you can use list:
@@ -103,38 +105,46 @@ Now you can use list:
-- linux-ubuntu20.04-skylake / gcc@9.3.0 ------------------------
ninja@1.10.2
With ``mymirror`` configured and an index available, Spack will automatically
use it during concretization and installation. That means that you can expect
``spack install ninja`` to fetch prebuilt packages from the mirror. Let's
verify by re-installing ninja:
Great! So now let's say you have a different spack installation, or perhaps just
a different environment for the same one, and you want to install a package from
that build cache. Let's first uninstall the actual library "ninja" to see if we can
re-install it from the cache.
.. code-block:: console
$ spack uninstall ninja
$ spack install ninja
==> Installing ninja-1.11.1-yxferyhmrjkosgta5ei6b4lqf6bxbscz
==> Fetching file:///home/spackuser/spack/spack-cache/build_cache/linux-ubuntu20.04-skylake-gcc-9.3.0-ninja-1.10.2-yxferyhmrjkosgta5ei6b4lqf6bxbscz.spec.json.sig
gpg: Signature made Do 12 Jan 2023 16:01:04 CET
gpg: using RSA key 61B82B2B2350E171BD17A1744E3A689061D57BF6
gpg: Good signature from "example (GPG created for Spack) <example@example.com>" [ultimate]
==> Fetching file:///home/spackuser/spack/spack-cache/build_cache/linux-ubuntu20.04-skylake/gcc-9.3.0/ninja-1.10.2/linux-ubuntu20.04-skylake-gcc-9.3.0-ninja-1.10.2-yxferyhmrjkosgta5ei6b4lqf6bxbscz.spack
==> Extracting ninja-1.10.2-yxferyhmrjkosgta5ei6b4lqf6bxbscz from binary cache
==> ninja: Successfully installed ninja-1.11.1-yxferyhmrjkosgta5ei6b4lqf6bxbscz
Search: 0.00s. Fetch: 0.17s. Install: 0.12s. Total: 0.29s
[+] /home/harmen/spack/opt/spack/linux-ubuntu20.04-skylake/gcc-9.3.0/ninja-1.11.1-yxferyhmrjkosgta5ei6b4lqf6bxbscz
It worked! You've just completed a full example of creating a build cache with
a spec of interest, adding it as a mirror, updating its index, listing the contents,
and finally, installing from it.
By default Spack falls back to building from sources when the mirror is not available
or when the package is simply not already available. To force Spack to only install
prebuilt packages, you can use
And now reinstall from the buildcache
.. code-block:: console
$ spack install --use-buildcache only <package>
$ spack buildcache install ninja
==> buildcache spec(s) matching ninja
==> Fetching file:///home/spackuser/spack/spack-cache/build_cache/linux-ubuntu20.04-skylake/gcc-9.3.0/ninja-1.10.2/linux-ubuntu20.04-skylake-gcc-9.3.0-ninja-1.10.2-i4e5luour7jxdpc3bkiykd4imke3mkym.spack
####################################################################################################################################### 100.0%
==> Installing buildcache for spec ninja@1.10.2%gcc@9.3.0 arch=linux-ubuntu20.04-skylake
gpgconf: socketdir is '/run/user/1000/gnupg'
gpg: Signature made Tue 23 Mar 2021 10:16:29 PM MDT
gpg: using RSA key E6DF6A8BD43208E4D6F392F23777740B7DBD643D
gpg: Good signature from "spackuser (GPG created for Spack) <spackuser@noreply.users.github.com>" [ultimate]
It worked! You've just completed a full example of creating a build cache with
a spec of interest, adding it as a mirror, updating it's index, listing the contents,
and finally, installing from it.
Note that the above command is intended to install a particular package to a
build cache you have created, and not to install a package from a build cache.
For the latter, once a mirror is added, by default when you do ``spack install`` the ``--use-cache``
flag is set, and you will install a package from a build cache if it is available.
If you want to always use the cache, you can do:
.. code-block:: console
$ spack install --cache-only <package>
For example, to combine all of the commands above to add the E4S build cache
and then install from it exclusively, you would do:
@@ -143,7 +153,7 @@ and then install from it exclusively, you would do:
$ spack mirror add E4S https://cache.e4s.io
$ spack buildcache keys --install --trust
$ spack install --use-buildcache only <package>
$ spack install --cache-only <package>
We use ``--install`` and ``--trust`` to say that we are installing keys to our
keyring, and trusting all downloaded keys.
@@ -155,182 +165,16 @@ List of popular build caches
* `Extreme-scale Scientific Software Stack (E4S) <https://e4s-project.github.io/>`_: `build cache <https://oaciss.uoregon.edu/e4s/inventory.html>`_
----------
Relocation
----------
When using buildcaches across different machines, it is likely that the install
root will be different from the one used to build the binaries.
To address this issue, Spack automatically relocates all paths encoded in binaries
and scripts to their new location upon install.
Note that there are some cases where this is not possible: if binaries are built in
a relatively short path, and then installed to a longer path, there may not be enough
space in the binary to encode the new path. In this case, Spack will fail to install
the package from the build cache, and a source build is required.
To reduce the likelihood of this happening, it is highly recommended to add padding to
the install root during the build, as specified in the :ref:`config <config-yaml>`
section of the configuration:
.. code-block:: yaml
config:
install_tree:
root: /opt/spack
padded_length: 128
-----------------------------------------
OCI / Docker V2 registries as build cache
-----------------------------------------
Spack can also use OCI or Docker V2 registries such as Dockerhub, Quay.io,
Github Packages, GitLab Container Registry, JFrog Artifactory, and others
as build caches. This is a convenient way to share binaries using public
infrastructure, or to cache Spack built binaries in Github Actions and
GitLab CI.
To get started, configure an OCI mirror using ``oci://`` as the scheme,
and optionally specify a username and password (or personal access token):
.. code-block:: console
$ spack mirror add --oci-username username --oci-password password my_registry oci://example.com/my_image
Spack follows the naming conventions of Docker, with Dockerhub as the default
registry. To use Dockerhub, you can omit the registry domain:
.. code-block:: console
$ spack mirror add --oci-username username --oci-password password my_registry oci://username/my_image
From here, you can use the mirror as any other build cache:
.. code-block:: console
$ spack buildcache push my_registry <specs...> # push to the registry
$ spack install <specs...> # install from the registry
A unique feature of buildcaches on top of OCI registries is that it's incredibly
easy to generate get a runnable container image with the binaries installed. This
is a great way to make applications available to users without requiring them to
install Spack -- all you need is Docker, Podman or any other OCI-compatible container
runtime.
To produce container images, all you need to do is add the ``--base-image`` flag
when pushing to the build cache:
.. code-block:: console
$ spack buildcache push --base-image ubuntu:20.04 my_registry ninja
Pushed to example.com/my_image:ninja-1.11.1-yxferyhmrjkosgta5ei6b4lqf6bxbscz.spack
$ docker run -it example.com/my_image:ninja-1.11.1-yxferyhmrjkosgta5ei6b4lqf6bxbscz.spack
root@e4c2b6f6b3f4:/# ninja --version
1.11.1
If ``--base-image`` is not specified, distroless images are produced. In practice,
you won't be able to run these as containers, since they don't come with libc and
other system dependencies. However, they are still compatible with tools like
``skopeo``, ``podman``, and ``docker`` for pulling and pushing.
.. note::
The docker ``overlayfs2`` storage driver is limited to 128 layers, above which a
``max depth exceeded`` error may be produced when pulling the image. There
are `alternative drivers <https://docs.docker.com/storage/storagedriver/>`_.
------------------------------------
Spack build cache for GitHub Actions
------------------------------------
To significantly speed up Spack in GitHub Actions, binaries can be cached in
GitHub Packages. This service is an OCI registry that can be linked to a GitHub
repository.
A typical workflow is to include a ``spack.yaml`` environment in your repository
that specifies the packages to install, the target architecture, and the build
cache to use under ``mirrors``:
.. code-block:: yaml
spack:
specs:
- python@3.11
config:
install_tree:
root: /opt/spack
padded_length: 128
packages:
all:
require: target=x86_64_v2
mirrors:
local-buildcache: oci://ghcr.io/<organization>/<repository>
A GitHub action can then be used to install the packages and push them to the
build cache:
.. code-block:: yaml
name: Install Spack packages
on: push
env:
SPACK_COLOR: always
jobs:
example:
runs-on: ubuntu-22.04
permissions:
packages: write
steps:
- name: Checkout
uses: actions/checkout@v3
- name: Checkout Spack
uses: actions/checkout@v3
with:
repository: spack/spack
path: spack
- name: Setup Spack
run: echo "$PWD/spack/bin" >> "$GITHUB_PATH"
- name: Concretize
run: spack -e . concretize
- name: Install
run: spack -e . install --no-check-signature
- name: Run tests
run: ./my_view/bin/python3 -c 'print("hello world")'
- name: Push to buildcache
run: |
spack -e . mirror set --oci-username ${{ github.actor }} --oci-password "${{ secrets.GITHUB_TOKEN }}" local-buildcache
spack -e . buildcache push --base-image ubuntu:22.04 --unsigned --update-index local-buildcache
if: ${{ !cancelled() }}
The first time this action runs, it will build the packages from source and
push them to the build cache. Subsequent runs will pull the binaries from the
build cache. The concretizer will ensure that prebuilt binaries are favored
over source builds.
The build cache entries appear in the GitHub Packages section of your repository,
and contain instructions for pulling and running them with ``docker`` or ``podman``.
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
Using Spack's public build cache for GitHub Actions
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
Spack offers a public build cache for GitHub Actions with a set of common packages,
which lets you get started quickly. See the following resources for more information:
* `spack/github-actions-buildcache <https://github.com/spack/github-actions-buildcache>`_
Initial build and later installation do not necessarily happen at the same
location. Spack provides a relocation capability and corrects for RPATHs and
non-relocatable scripts. However, many packages compile paths into binary
artifacts directly. In such cases, the build instructions of this package would
need to be adjusted for better re-locatability.
.. _cmd-spack-buildcache:
@@ -339,7 +183,7 @@ which lets you get started quickly. See the following resources for more informa
--------------------
^^^^^^^^^^^^^^^^^^^^^^^^^^^
``spack buildcache push``
``spack buildcache create``
^^^^^^^^^^^^^^^^^^^^^^^^^^^
Create tarball of installed Spack package and all dependencies.

View File

@@ -1,4 +1,4 @@
.. Copyright 2013-2023 Lawrence Livermore National Security, LLC and other
.. Copyright 2013-2021 Lawrence Livermore National Security, LLC and other
Spack Project Developers. See the top-level COPYRIGHT file for details.
SPDX-License-Identifier: (Apache-2.0 OR MIT)
@@ -15,13 +15,15 @@ is an entire command dedicated to the management of every aspect of bootstrappin
.. command-output:: spack bootstrap --help
Spack is configured to bootstrap its dependencies lazily by default; i.e. the first time they are needed and
can't be found. You can readily check if any prerequisite for using Spack is missing by running:
The first thing to know to understand bootstrapping in Spack is that each of
Spack's dependencies is bootstrapped lazily; i.e. the first time it is needed and
can't be found. You can readily check if any prerequisite for using Spack
is missing by running:
.. code-block:: console
% spack bootstrap status
Spack v0.19.0 - python@3.8
Spack v0.17.1 - python@3.8
[FAIL] Core Functionalities
[B] MISSING "clingo": required to concretize specs
@@ -32,14 +34,9 @@ can't be found. You can readily check if any prerequisite for using Spack is mis
Spack will take care of bootstrapping any missing dependency marked as [B]. Dependencies marked as [-] are instead required to be found on the system.
% echo $?
1
In the case of the output shown above Spack detected that both ``clingo`` and ``gnupg``
are missing and it's giving detailed information on why they are needed and whether
they can be bootstrapped. The return code of this command summarizes the results, if any
dependencies are missing the return code is ``1``, otherwise ``0``. Running a command that
concretizes a spec, like:
they can be bootstrapped. Running a command that concretize a spec, like:
.. code-block:: console
@@ -49,22 +46,7 @@ concretizes a spec, like:
==> Installing "clingo-bootstrap@spack%apple-clang@12.0.0~docs~ipo+python build_type=Release arch=darwin-catalina-x86_64" from a buildcache
[ ... ]
automatically triggers the bootstrapping of clingo from pre-built binaries as expected.
Users can also bootstrap all the dependencies needed by Spack in a single command, which
might be useful to setup containers or other similar environments:
.. code-block:: console
$ spack bootstrap now
==> Bootstrapping clingo from pre-built binaries
==> Fetching https://mirror.spack.io/bootstrap/github-actions/v0.3/build_cache/linux-centos7-x86_64-gcc-10.2.1-clingo-bootstrap-spack-shqedxgvjnhiwdcdrvjhbd73jaevv7wt.spec.json
==> Fetching https://mirror.spack.io/bootstrap/github-actions/v0.3/build_cache/linux-centos7-x86_64/gcc-10.2.1/clingo-bootstrap-spack/linux-centos7-x86_64-gcc-10.2.1-clingo-bootstrap-spack-shqedxgvjnhiwdcdrvjhbd73jaevv7wt.spack
==> Installing "clingo-bootstrap@spack%gcc@10.2.1~docs~ipo+python+static_libstdcpp build_type=Release arch=linux-centos7-x86_64" from a buildcache
==> Bootstrapping patchelf from pre-built binaries
==> Fetching https://mirror.spack.io/bootstrap/github-actions/v0.3/build_cache/linux-centos7-x86_64-gcc-10.2.1-patchelf-0.15.0-htk62k7efo2z22kh6kmhaselru7bfkuc.spec.json
==> Fetching https://mirror.spack.io/bootstrap/github-actions/v0.3/build_cache/linux-centos7-x86_64/gcc-10.2.1/patchelf-0.15.0/linux-centos7-x86_64-gcc-10.2.1-patchelf-0.15.0-htk62k7efo2z22kh6kmhaselru7bfkuc.spack
==> Installing "patchelf@0.15.0%gcc@10.2.1 ldflags="-static-libstdc++ -static-libgcc" arch=linux-centos7-x86_64" from a buildcache
triggers the bootstrapping of clingo from pre-built binaries as expected.
-----------------------
The Bootstrapping store
@@ -125,19 +107,19 @@ If need be, you can disable bootstrapping altogether by running:
in which case it's your responsibility to ensure Spack runs in an
environment where all its prerequisites are installed. You can
also configure Spack to skip certain bootstrapping methods by disabling
them specifically:
also configure Spack to skip certain bootstrapping methods by *untrusting*
them. For instance:
.. code-block:: console
% spack bootstrap disable github-actions
==> "github-actions" is now disabled and will not be used for bootstrapping
% spack bootstrap untrust github-actions
==> "github-actions" is now untrusted and will not be used for bootstrapping
tells Spack to skip trying to bootstrap from binaries. To add the "github-actions" method back you can:
.. code-block:: console
% spack bootstrap enable github-actions
% spack bootstrap trust github-actions
There is also an option to reset the bootstrapping configuration to Spack's defaults:

View File

@@ -1,25 +1,230 @@
.. Copyright 2013-2023 Lawrence Livermore National Security, LLC and other
.. Copyright 2013-2022 Lawrence Livermore National Security, LLC and other
Spack Project Developers. See the top-level COPYRIGHT file for details.
SPDX-License-Identifier: (Apache-2.0 OR MIT)
.. _build-settings:
================================
Package Settings (packages.yaml)
================================
Spack allows you to customize how your software is built through the
``packages.yaml`` file. Using it, you can make Spack prefer particular
implementations of virtual dependencies (e.g., MPI or BLAS/LAPACK),
or you can make it prefer to build with particular compilers. You can
also tell Spack to use *external* software installations already
present on your system.
At a high level, the ``packages.yaml`` file is structured like this:
.. code-block:: yaml
packages:
package1:
# settings for package1
package2:
# settings for package2
# ...
all:
# settings that apply to all packages.
So you can either set build preferences specifically for *one* package,
or you can specify that certain settings should apply to *all* packages.
The types of settings you can customize are described in detail below.
Spack's build defaults are in the default
``etc/spack/defaults/packages.yaml`` file. You can override them in
``~/.spack/packages.yaml`` or ``etc/spack/packages.yaml``. For more
details on how this works, see :ref:`configuration-scopes`.
.. _sec-external-packages:
-----------------
External Packages
-----------------
Spack can be configured to use externally-installed
packages rather than building its own packages. This may be desirable
if machines ship with system packages, such as a customized MPI
that should be used instead of Spack building its own MPI.
External packages are configured through the ``packages.yaml`` file found
in a Spack installation's ``etc/spack/`` or a user's ``~/.spack/``
directory. Here's an example of an external configuration:
.. code-block:: yaml
packages:
openmpi:
externals:
- spec: "openmpi@1.4.3%gcc@4.4.7 arch=linux-debian7-x86_64"
prefix: /opt/openmpi-1.4.3
- spec: "openmpi@1.4.3%gcc@4.4.7 arch=linux-debian7-x86_64+debug"
prefix: /opt/openmpi-1.4.3-debug
- spec: "openmpi@1.6.5%intel@10.1 arch=linux-debian7-x86_64"
prefix: /opt/openmpi-1.6.5-intel
This example lists three installations of OpenMPI, one built with GCC,
one built with GCC and debug information, and another built with Intel.
If Spack is asked to build a package that uses one of these MPIs as a
dependency, it will use the pre-installed OpenMPI in
the given directory. Note that the specified path is the top-level
install prefix, not the ``bin`` subdirectory.
``packages.yaml`` can also be used to specify modules to load instead
of the installation prefixes. The following example says that module
``CMake/3.7.2`` provides cmake version 3.7.2.
.. code-block:: yaml
cmake:
externals:
- spec: cmake@3.7.2
modules:
- CMake/3.7.2
Each ``packages.yaml`` begins with a ``packages:`` attribute, followed
by a list of package names. To specify externals, add an ``externals:``
attribute under the package name, which lists externals.
Each external should specify a ``spec:`` string that should be as
well-defined as reasonably possible. If a
package lacks a spec component, such as missing a compiler or
package version, then Spack will guess the missing component based
on its most-favored packages, and it may guess incorrectly.
Each package version and compiler listed in an external should
have entries in Spack's packages and compiler configuration, even
though the package and compiler may not ever be built.
The packages configuration can tell Spack to use an external location
for certain package versions, but it does not restrict Spack to using
external packages. In the above example, since newer versions of OpenMPI
are available, Spack will choose to start building and linking with the
latest version rather than continue using the pre-installed OpenMPI versions.
To prevent this, the ``packages.yaml`` configuration also allows packages
to be flagged as non-buildable. The previous example could be modified to
be:
.. code-block:: yaml
packages:
openmpi:
externals:
- spec: "openmpi@1.4.3%gcc@4.4.7 arch=linux-debian7-x86_64"
prefix: /opt/openmpi-1.4.3
- spec: "openmpi@1.4.3%gcc@4.4.7 arch=linux-debian7-x86_64+debug"
prefix: /opt/openmpi-1.4.3-debug
- spec: "openmpi@1.6.5%intel@10.1 arch=linux-debian7-x86_64"
prefix: /opt/openmpi-1.6.5-intel
buildable: False
The addition of the ``buildable`` flag tells Spack that it should never build
its own version of OpenMPI, and it will instead always rely on a pre-built
OpenMPI. Similar to ``paths``, ``buildable`` is specified as a property under
a package name.
If an external module is specified as not buildable, then Spack will load the
external module into the build environment which can be used for linking.
The ``buildable`` does not need to be paired with external packages.
It could also be used alone to forbid packages that may be
buggy or otherwise undesirable.
Virtual packages in Spack can also be specified as not buildable, and
external implementations can be provided. In the example above,
OpenMPI is configured as not buildable, but Spack will often prefer
other MPI implementations over the externally available OpenMPI. Spack
can be configured with every MPI provider not buildable individually,
but more conveniently:
.. code-block:: yaml
packages:
mpi:
buildable: False
openmpi:
externals:
- spec: "openmpi@1.4.3%gcc@4.4.7 arch=linux-debian7-x86_64"
prefix: /opt/openmpi-1.4.3
- spec: "openmpi@1.4.3%gcc@4.4.7 arch=linux-debian7-x86_64+debug"
prefix: /opt/openmpi-1.4.3-debug
- spec: "openmpi@1.6.5%intel@10.1 arch=linux-debian7-x86_64"
prefix: /opt/openmpi-1.6.5-intel
Implementations can also be listed immediately under the virtual they provide:
.. code-block:: yaml
packages:
mpi:
buildable: False
openmpi@1.4.3%gcc@4.4.7 arch=linux-debian7-x86_64: /opt/openmpi-1.4.3
openmpi@1.4.3%gcc@4.4.7 arch=linux-debian7-x86_64+debug: /opt/openmpi-1.4.3-debug
openmpi@1.6.5%intel@10.1 arch=linux-debian7-x86_64: /opt/openmpi-1.6.5-intel
mpich@3.3 %clang@9.0.0 arch=linux-debian7-x86_64: /opt/mpich-3.3-intel
Spack can then use any of the listed external implementations of MPI
to satisfy a dependency, and will choose depending on the compiler and
architecture.
.. _cmd-spack-external-find:
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
Automatically Find External Packages
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
You can run the :ref:`spack external find <spack-external-find>` command
to search for system-provided packages and add them to ``packages.yaml``.
After running this command your ``packages.yaml`` may include new entries:
.. code-block:: yaml
packages:
cmake:
externals:
- spec: cmake@3.17.2
prefix: /usr
Generally this is useful for detecting a small set of commonly-used packages;
for now this is generally limited to finding build-only dependencies.
Specific limitations include:
* Packages are not discoverable by default: For a package to be
discoverable with ``spack external find``, it needs to add special
logic. See :ref:`here <make-package-findable>` for more details.
* The current implementation only collects and examines executable files,
so it is typically only useful for build/run dependencies (in some cases
if a library package also provides an executable, it may be possible to
extract a meaningful Spec by running the executable - for example the
compiler wrappers in MPI implementations).
* The logic does not search through module files, it can only detect
packages with executables defined in ``PATH``; you can help Spack locate
externals which use module files by loading any associated modules for
packages that you want Spack to know about before running
``spack external find``.
* Spack does not overwrite existing entries in the package configuration:
If there is an external defined for a spec at any configuration scope,
then Spack will not add a new external entry (``spack config blame packages``
can help locate all external entries).
.. _concretizer-options:
==========================================
Concretization Settings (concretizer.yaml)
==========================================
----------------------
Concretizer options
----------------------
The ``concretizer.yaml`` configuration file allows to customize aspects of the
algorithm used to select the dependencies you install. The default configuration
is the following:
``packages.yaml`` gives the concretizer preferences for specific packages,
but you can also use ``concretizer.yaml`` to customize aspects of the
algorithm it uses to select the dependencies you install:
.. literalinclude:: _spack_root/etc/spack/defaults/concretizer.yaml
:language: yaml
--------------------------------
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
Reuse already installed packages
--------------------------------
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
The ``reuse`` attribute controls whether Spack will prefer to use installed packages (``true``), or
whether it will do a "fresh" installation and prefer the latest settings from
@@ -37,18 +242,14 @@ to enable reuse for a single installation, and you can use:
spack install --fresh <spec>
to do a fresh install if ``reuse`` is enabled by default.
``reuse: dependencies`` is the default.
``reuse: true`` is the default.
.. seealso::
FAQ: :ref:`Why does Spack pick particular versions and variants? <faq-concretizer-precedence>`
------------------------------------------
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
Selection of the target microarchitectures
------------------------------------------
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
The options under the ``targets`` attribute control which targets are considered during a solve.
Currently the options in this section are only configurable from the ``concretizer.yaml`` file
Currently the options in this section are only configurable from the ``concretization.yaml`` file
and there are no corresponding command line arguments to enable them for a single solve.
The ``granularity`` option can take two possible values: ``microarchitectures`` and ``generic``.
@@ -78,28 +279,112 @@ microarchitectures considered during the solve are constrained to be compatible
host Spack is currently running on. For instance, if this option is set to ``true``, a
user cannot concretize for ``target=icelake`` while running on an Haswell node.
---------------
Duplicate nodes
---------------
.. _package-preferences:
The ``duplicates`` attribute controls whether the DAG can contain multiple configurations of
the same package. This is mainly relevant for build dependencies, which may have their version
pinned by some nodes, and thus be required at different versions by different nodes in the same
DAG.
-------------------
Package Preferences
-------------------
The ``strategy`` option controls how the solver deals with duplicates. If the value is ``none``,
then a single configuration per package is allowed in the DAG. This means, for instance, that only
a single ``cmake`` or a single ``py-setuptools`` version is allowed. The result would be a slightly
faster concretization, at the expense of making a few specs unsolvable.
Spack can be configured to prefer certain compilers, package
versions, dependencies, and variants during concretization.
The preferred configuration can be controlled via the
``~/.spack/packages.yaml`` file for user configurations, or the
``etc/spack/packages.yaml`` site configuration.
If the value is ``minimal`` Spack will allow packages tagged as ``build-tools`` to have duplicates.
This allows, for instance, to concretize specs whose nodes require different, and incompatible, ranges
of some build tool. For instance, in the figure below the latest `py-shapely` requires a newer `py-setuptools`,
while `py-numpy` still needs an older version:
Here's an example ``packages.yaml`` file that sets preferred packages:
.. figure:: images/shapely_duplicates.svg
:scale: 70 %
:align: center
.. code-block:: yaml
Up to Spack v0.20 ``duplicates:strategy:none`` was the default (and only) behavior. From Spack v0.21 the
default behavior is ``duplicates:strategy:minimal``.
packages:
opencv:
compiler: [gcc@4.9]
variants: +debug
gperftools:
version: [2.2, 2.4, 2.3]
all:
compiler: [gcc@4.4.7, 'gcc@4.6:', intel, clang, pgi]
target: [sandybridge]
providers:
mpi: [mvapich2, mpich, openmpi]
At a high level, this example is specifying how packages should be
concretized. The opencv package should prefer using GCC 4.9 and
be built with debug options. The gperftools package should prefer version
2.2 over 2.4. Every package on the system should prefer mvapich2 for
its MPI and GCC 4.4.7 (except for opencv, which overrides this by preferring GCC 4.9).
These options are used to fill in implicit defaults. Any of them can be overwritten
on the command line if explicitly requested.
Each ``packages.yaml`` file begins with the string ``packages:`` and
package names are specified on the next level. The special string ``all``
applies settings to *all* packages. Underneath each package name is one
or more components: ``compiler``, ``variants``, ``version``,
``providers``, and ``target``. Each component has an ordered list of
spec ``constraints``, with earlier entries in the list being preferred
over later entries.
Sometimes a package installation may have constraints that forbid
the first concretization rule, in which case Spack will use the first
legal concretization rule. Going back to the example, if a user
requests gperftools 2.3 or later, then Spack will install version 2.4
as the 2.4 version of gperftools is preferred over 2.3.
An explicit concretization rule in the preferred section will always
take preference over unlisted concretizations. In the above example,
xlc isn't listed in the compiler list. Every listed compiler from
gcc to pgi will thus be preferred over the xlc compiler.
The syntax for the ``provider`` section differs slightly from other
concretization rules. A provider lists a value that packages may
``depend_on`` (e.g, MPI) and a list of rules for fulfilling that
dependency.
.. _package_permissions:
-------------------
Package Permissions
-------------------
Spack can be configured to assign permissions to the files installed
by a package.
In the ``packages.yaml`` file under ``permissions``, the attributes
``read``, ``write``, and ``group`` control the package
permissions. These attributes can be set per-package, or for all
packages under ``all``. If permissions are set under ``all`` and for a
specific package, the package-specific settings take precedence.
The ``read`` and ``write`` attributes take one of ``user``, ``group``,
and ``world``.
.. code-block:: yaml
packages:
all:
permissions:
write: group
group: spack
my_app:
permissions:
read: group
group: my_team
The permissions settings describe the broadest level of access to
installations of the specified packages. The execute permissions of
the file are set to the same level as read permissions for those files
that are executable. The default setting for ``read`` is ``world``,
and for ``write`` is ``user``. In the example above, installations of
``my_app`` will be installed with user and group permissions but no
world permissions, and owned by the group ``my_team``. All other
packages will be installed with user and group write privileges, and
world read privileges. Those packages will be owned by the group
``spack``.
The ``group`` attribute assigns a Unix-style group to a package. All
files installed by the package will be owned by the assigned group,
and the sticky group bit will be set on the install prefix and all
directories inside the install prefix. This will ensure that even
manually placed files within the install prefix are owned by the
assigned group. If no group is assigned, Spack will allow the OS
default behavior to go as expected.

View File

@@ -1,4 +1,4 @@
.. Copyright 2013-2023 Lawrence Livermore National Security, LLC and other
.. Copyright 2013-2022 Lawrence Livermore National Security, LLC and other
Spack Project Developers. See the top-level COPYRIGHT file for details.
SPDX-License-Identifier: (Apache-2.0 OR MIT)
@@ -62,11 +62,11 @@ on these ideas for each distinct build system that Spack supports:
build_systems/bundlepackage
build_systems/cudapackage
build_systems/custompackage
build_systems/inteloneapipackage
build_systems/intelpackage
build_systems/rocmpackage
build_systems/sourceforgepackage
build_systems/custompackage
build_systems/multiplepackage
For reference, the :py:mod:`Build System API docs <spack.build_systems>`
provide a list of build systems and methods/attributes that can be

View File

@@ -1,13 +1,13 @@
.. Copyright 2013-2023 Lawrence Livermore National Security, LLC and other
.. Copyright 2013-2022 Lawrence Livermore National Security, LLC and other
Spack Project Developers. See the top-level COPYRIGHT file for details.
SPDX-License-Identifier: (Apache-2.0 OR MIT)
.. _autotoolspackage:
---------
Autotools
---------
----------------
AutotoolsPackage
----------------
Autotools is a GNU build system that provides a build-script generator.
By running the platform-independent ``./configure`` script that comes
@@ -17,7 +17,7 @@ with the package, you can generate a platform-dependent Makefile.
Phases
^^^^^^
The ``AutotoolsBuilder`` and ``AutotoolsPackage`` base classes come with the following phases:
The ``AutotoolsPackage`` base class comes with the following phases:
#. ``autoreconf`` - generate the configure script
#. ``configure`` - generate the Makefiles
@@ -127,9 +127,9 @@ check out a commit from the ``master`` branch, you would want to add:
.. code-block:: python
depends_on("autoconf", type="build", when="@master")
depends_on("automake", type="build", when="@master")
depends_on("libtool", type="build", when="@master")
depends_on('autoconf', type='build', when='@master')
depends_on('automake', type='build', when='@master')
depends_on('libtool', type='build', when='@master')
It is typically redundant to list the ``m4`` macro processor package as a
dependency, since ``autoconf`` already depends on it.
@@ -145,7 +145,7 @@ example, the ``bash`` shell is used to run the ``autogen.sh`` script.
.. code-block:: python
def autoreconf(self, spec, prefix):
which("bash")("autogen.sh")
which('bash')('autogen.sh')
"""""""""""""""""""""""""""""""""""""""
patching configure or Makefile.in files
@@ -186,9 +186,9 @@ To opt out of this feature, use the following setting:
To enable it conditionally on different architectures, define a property and
make the package depend on ``gnuconfig`` as a build dependency:
.. code-block:: python
.. code-block
depends_on("gnuconfig", when="@1.0:")
depends_on('gnuconfig', when='@1.0:')
@property
def patch_config_files(self):
@@ -230,7 +230,7 @@ version, this can be done like so:
@property
def force_autoreconf(self):
return self.version == Version("1.2.3")
return self.version == Version('1.2.3')
^^^^^^^^^^^^^^^^^^^^^^^
Finding configure flags
@@ -278,22 +278,13 @@ function like so:
def configure_args(self):
args = []
if self.spec.satisfies("+mpi"):
args.append("--enable-mpi")
if '+mpi' in self.spec:
args.append('--enable-mpi')
else:
args.append("--disable-mpi")
args.append('--disable-mpi')
return args
Alternatively, you can use the :ref:`enable_or_disable <autotools_enable_or_disable>` helper:
.. code-block:: python
def configure_args(self):
return [self.enable_or_disable("mpi")]
Note that we are explicitly disabling MPI support if it is not
requested. This is important, as many Autotools packages will enable
options by default if the dependencies are found, and disable them
@@ -304,11 +295,9 @@ and `here <https://wiki.gentoo.org/wiki/Project:Quality_Assurance/Automagic_depe
for a rationale as to why these so-called "automagic" dependencies
are a problem.
.. note::
By default, Autotools installs packages to ``/usr``. We don't want this,
so Spack automatically adds ``--prefix=/path/to/installation/prefix``
to your list of ``configure_args``. You don't need to add this yourself.
By default, Autotools installs packages to ``/usr``. We don't want this,
so Spack automatically adds ``--prefix=/path/to/installation/prefix``
to your list of ``configure_args``. You don't need to add this yourself.
^^^^^^^^^^^^^^^^
Helper functions
@@ -319,8 +308,6 @@ You may have noticed that most of the Autotools flags are of the form
``--without-baz``. Since these flags are so common, Spack provides a
couple of helper functions to make your life easier.
.. _autotools_enable_or_disable:
"""""""""""""""""
enable_or_disable
"""""""""""""""""
@@ -332,11 +319,11 @@ typically used to enable or disable some feature within the package.
.. code-block:: python
variant(
"memchecker",
'memchecker',
default=False,
description="Memchecker support for debugging [degrades performance]"
description='Memchecker support for debugging [degrades performance]'
)
config_args.extend(self.enable_or_disable("memchecker"))
config_args.extend(self.enable_or_disable('memchecker'))
In this example, specifying the variant ``+memchecker`` will generate
the following configuration options:
@@ -356,15 +343,15 @@ the ``with_or_without`` method.
.. code-block:: python
variant(
"schedulers",
'schedulers',
values=disjoint_sets(
("auto",), ("alps", "lsf", "tm", "slurm", "sge", "loadleveler")
).with_non_feature_values("auto", "none"),
('auto',), ('alps', 'lsf', 'tm', 'slurm', 'sge', 'loadleveler')
).with_non_feature_values('auto', 'none'),
description="List of schedulers for which support is enabled; "
"'auto' lets openmpi determine",
)
if not spec.satisfies("schedulers=auto"):
config_args.extend(self.with_or_without("schedulers"))
if 'schedulers=auto' not in spec:
config_args.extend(self.with_or_without('schedulers'))
In this example, specifying the variant ``schedulers=slurm,sge`` will
generate the following configuration options:
@@ -389,16 +376,16 @@ generated, using the ``activation_value`` argument to
.. code-block:: python
variant(
"fabrics",
'fabrics',
values=disjoint_sets(
("auto",), ("psm", "psm2", "verbs", "mxm", "ucx", "libfabric")
).with_non_feature_values("auto", "none"),
('auto',), ('psm', 'psm2', 'verbs', 'mxm', 'ucx', 'libfabric')
).with_non_feature_values('auto', 'none'),
description="List of fabrics that are enabled; "
"'auto' lets openmpi determine",
)
if not spec.satisfies("fabrics=auto"):
config_args.extend(self.with_or_without("fabrics",
activation_value="prefix"))
if 'fabrics=auto' not in spec:
config_args.extend(self.with_or_without('fabrics',
activation_value='prefix'))
``activation_value`` accepts a callable that generates the configure
parameter value given the variant value; but the special value
@@ -422,16 +409,16 @@ When Spack variants and configure flags do not correspond one-to-one, the
.. code-block:: python
variant("debug_tools", default=False)
config_args += self.enable_or_disable("debug-tools", variant="debug_tools")
variant('debug_tools', default=False)
config_args += self.enable_or_disable('debug-tools', variant='debug_tools')
Or when one variant controls multiple flags:
.. code-block:: python
variant("debug_tools", default=False)
config_args += self.with_or_without("memchecker", variant="debug_tools")
config_args += self.with_or_without("profiler", variant="debug_tools")
variant('debug_tools', default=False)
config_args += self.with_or_without('memchecker', variant='debug_tools')
config_args += self.with_or_without('profiler', variant='debug_tools')
""""""""""""""""""""
@@ -445,8 +432,8 @@ For example:
.. code-block:: python
variant("profiler", when="@2.0:")
config_args += self.with_or_without("profiler")
variant('profiler', when='@2.0:')
config_args += self.with_or_without('profiler')
will neither add ``--with-profiler`` nor ``--without-profiler`` when the version is
below ``2.0``.
@@ -465,10 +452,10 @@ the variant values require atypical behavior.
def with_or_without_verbs(self, activated):
# Up through version 1.6, this option was named --with-openib.
# In version 1.7, it was renamed to be --with-verbs.
opt = "verbs" if self.spec.satisfies("@1.7:") else "openib"
opt = 'verbs' if self.spec.satisfies('@1.7:') else 'openib'
if not activated:
return f"--without-{opt}"
return f"--with-{opt}={self.spec['rdma-core'].prefix}"
return '--without-{0}'.format(opt)
return '--with-{0}={1}'.format(opt, self.spec['rdma-core'].prefix)
Defining ``with_or_without_verbs`` overrides the behavior of a
``fabrics=verbs`` variant, changing the configure-time option to
@@ -492,7 +479,7 @@ do this like so:
.. code-block:: python
configure_directory = "src"
configure_directory = 'src'
^^^^^^^^^^^^^^^^^^^^^^
Building out of source
@@ -504,7 +491,7 @@ This can be done using the ``build_directory`` variable:
.. code-block:: python
build_directory = "spack-build"
build_directory = 'spack-build'
By default, Spack will build the package in the same directory that
contains the ``configure`` script
@@ -527,8 +514,8 @@ library or build the documentation, you can add these like so:
.. code-block:: python
build_targets = ["all", "docs"]
install_targets = ["install", "docs"]
build_targets = ['all', 'docs']
install_targets = ['install', 'docs']
^^^^^^^
Testing

View File

@@ -1,40 +1,17 @@
.. Copyright 2013-2023 Lawrence Livermore National Security, LLC and other
.. Copyright 2013-2022 Lawrence Livermore National Security, LLC and other
Spack Project Developers. See the top-level COPYRIGHT file for details.
SPDX-License-Identifier: (Apache-2.0 OR MIT)
.. _bundlepackage:
------
Bundle
------
-------------
BundlePackage
-------------
``BundlePackage`` represents a set of packages that are expected to work
well together, such as a collection of commonly used software libraries.
The associated software is specified as dependencies.
If it makes sense, variants, conflicts, and requirements can be added to
the package. :ref:`Variants <variants>` ensure that common build options
are consistent across the packages supporting them. :ref:`Conflicts
and requirements <packaging_conflicts>` prevent attempts to build with known
bugs or limitations.
For example, if ``MyBundlePackage`` is known to only build on ``linux``,
it could use the ``require`` directive as follows:
.. code-block:: python
require("platform=linux", msg="MyBundlePackage only builds on linux")
Spack has a number of built-in bundle packages, such as:
* `AmdAocl <https://github.com/spack/spack/blob/develop/var/spack/repos/builtin/packages/amd-aocl/package.py>`_
* `EcpProxyApps <https://github.com/spack/spack/blob/develop/var/spack/repos/builtin/packages/ecp-proxy-apps/package.py>`_
* `Libc <https://github.com/spack/spack/blob/develop/var/spack/repos/builtin/packages/libc/package.py>`_
* `Xsdk <https://github.com/spack/spack/blob/develop/var/spack/repos/builtin/packages/xsdk/package.py>`_
where ``Xsdk`` also inherits from ``CudaPackage`` and ``RocmPackage`` and
``Libc`` is a virtual bundle package for the C standard library.
``BundlePackage`` represents a set of packages that are expected to work well
together, such as a collection of commonly used software libraries. The
associated software is specified as bundle dependencies.
^^^^^^^^

View File

@@ -1,13 +1,13 @@
.. Copyright 2013-2023 Lawrence Livermore National Security, LLC and other
.. Copyright 2013-2021 Lawrence Livermore National Security, LLC and other
Spack Project Developers. See the top-level COPYRIGHT file for details.
SPDX-License-Identifier: (Apache-2.0 OR MIT)
.. _cachedcmakepackage:
-----------
CachedCMake
-----------
------------------
CachedCMakePackage
------------------
The CachedCMakePackage base class is used for CMake-based workflows
that create a CMake cache file prior to running ``cmake``. This is
@@ -87,7 +87,7 @@ A typical usage of these methods may look something like this:
.. code-block:: python
def initconfig_mpi_entries(self):
def initconfig_mpi_entries(self)
# Get existing MPI configurations
entries = super(self, Foo).initconfig_mpi_entries()
@@ -95,25 +95,25 @@ A typical usage of these methods may look something like this:
# This spec has an MPI variant, and we need to enable MPI when it is on.
# This hypothetical package controls MPI with the ``FOO_MPI`` option to
# cmake.
if self.spec.satisfies("+mpi"):
entries.append(cmake_cache_option("FOO_MPI", True, "enable mpi"))
if '+mpi' in self.spec:
entries.append(cmake_cache_option('FOO_MPI', True, "enable mpi"))
else:
entries.append(cmake_cache_option("FOO_MPI", False, "disable mpi"))
entries.append(cmake_cache_option('FOO_MPI', False, "disable mpi"))
def initconfig_package_entries(self):
# Package specific options
entries = []
entries.append("#Entries for build options")
entries.append('#Entries for build options')
bar_on = self.spec.satisfies("+bar")
entries.append(cmake_cache_option("FOO_BAR", bar_on, "toggle bar"))
bar_on = '+bar' in self.spec
entries.append(cmake_cache_option('FOO_BAR', bar_on, 'toggle bar'))
entries.append("#Entries for dependencies")
entries.append('#Entries for dependencies')
if self.spec["blas"].name == "baz": # baz is our blas provider
entries.append(cmake_cache_string("FOO_BLAS", "baz", "Use baz"))
entries.append(cmake_cache_path("BAZ_PREFIX", self.spec["baz"].prefix))
if self.spec['blas'].name == 'baz': # baz is our blas provider
entries.append(cmake_cache_string('FOO_BLAS', 'baz', 'Use baz'))
entries.append(cmake_cache_path('BAZ_PREFIX', self.spec['baz'].prefix))
^^^^^^^^^^^^^^^^^^^^^^
External documentation

View File

@@ -1,13 +1,13 @@
.. Copyright 2013-2023 Lawrence Livermore National Security, LLC and other
.. Copyright 2013-2022 Lawrence Livermore National Security, LLC and other
Spack Project Developers. See the top-level COPYRIGHT file for details.
SPDX-License-Identifier: (Apache-2.0 OR MIT)
.. _cmakepackage:
-----
CMake
-----
------------
CMakePackage
------------
Like Autotools, CMake is a widely-used build-script generator. Designed
by Kitware, CMake is the most popular build system for new C, C++, and
@@ -21,7 +21,7 @@ whereas Autotools is Unix-only.
Phases
^^^^^^
The ``CMakeBuilder`` and ``CMakePackage`` base classes come with the following phases:
The ``CMakePackage`` base class comes with the following phases:
#. ``cmake`` - generate the Makefile
#. ``build`` - build the package
@@ -130,8 +130,8 @@ Adding flags to cmake
To add additional flags to the ``cmake`` call, simply override the
``cmake_args`` function. The following example defines values for the flags
``WHATEVER``, ``ENABLE_BROKEN_FEATURE``, ``DETECT_HDF5``, and ``THREADS`` with
and without the :meth:`~spack.build_systems.cmake.CMakeBuilder.define` and
:meth:`~spack.build_systems.cmake.CMakeBuilder.define_from_variant` helper functions:
and without the :meth:`~spack.build_systems.cmake.CMakePackage.define` and
:meth:`~spack.build_systems.cmake.CMakePackage.define_from_variant` helper functions:
.. code-block:: python

View File

@@ -1,13 +1,13 @@
.. Copyright 2013-2023 Lawrence Livermore National Security, LLC and other
.. Copyright 2013-2022 Lawrence Livermore National Security, LLC and other
Spack Project Developers. See the top-level COPYRIGHT file for details.
SPDX-License-Identifier: (Apache-2.0 OR MIT)
.. _cudapackage:
----
Cuda
----
-----------
CudaPackage
-----------
Different from other packages, ``CudaPackage`` does not represent a build system.
Instead its goal is to simplify and unify usage of ``CUDA`` in other packages by providing a `mixin-class <https://en.wikipedia.org/wiki/Mixin>`_.
@@ -28,14 +28,11 @@ This package provides the following variants:
* **cuda_arch**
This variant supports the optional specification of one or multiple architectures.
This variant supports the optional specification of the architecture.
Valid values are maintained in the ``cuda_arch_values`` property and
are the numeric character equivalent of the compute capability version
(e.g., '10' for version 1.0). Each provided value affects associated
``CUDA`` dependencies and compiler conflicts.
The variant builds both PTX code for the _virtual_ architecture
(e.g. ``compute_10``) and binary code for the _real_ architecture (e.g. ``sm_10``).
GPUs and their compute capability versions are listed at
https://developer.nvidia.com/cuda-gpus .
@@ -54,8 +51,8 @@ to terminate such build attempts with a suitable message:
.. code-block:: python
conflicts("cuda_arch=none", when="+cuda",
msg="CUDA architecture is required")
conflicts('cuda_arch=none', when='+cuda',
msg='CUDA architecture is required')
Similarly, if your software does not support all versions of the property,
you could add ``conflicts`` to your package for those versions. For example,
@@ -66,13 +63,13 @@ custom message should a user attempt such a build:
.. code-block:: python
unsupported_cuda_archs = [
"10", "11", "12", "13",
"20", "21",
"30", "32", "35", "37"
'10', '11', '12', '13',
'20', '21',
'30', '32', '35', '37'
]
for value in unsupported_cuda_archs:
conflicts(f"cuda_arch={value}", when="+cuda",
msg=f"CUDA architecture {value} is not supported")
conflicts('cuda_arch={0}'.format(value), when='+cuda',
msg='CUDA architecture {0} is not supported'.format(value))
^^^^^^^
Methods
@@ -83,7 +80,7 @@ standard CUDA compiler flags.
**cuda_flags**
This built-in static method returns a list of command line flags
This built-in static method returns a list of command line flags
for the chosen ``cuda_arch`` value(s). The flags are intended to
be passed to the CUDA compiler driver (i.e., ``nvcc``).
@@ -107,16 +104,16 @@ class of your package. For example, you can add it to your
spec = self.spec
args = []
...
if spec.satisfies("+cuda"):
if '+cuda' in spec:
# Set up the cuda macros needed by the build
args.append("-DWITH_CUDA=ON")
cuda_arch_list = spec.variants["cuda_arch"].value
args.append('-DWITH_CUDA=ON')
cuda_arch_list = spec.variants['cuda_arch'].value
cuda_arch = cuda_arch_list[0]
if cuda_arch != "none":
args.append(f"-DCUDA_FLAGS=-arch=sm_{cuda_arch}")
if cuda_arch != 'none':
args.append('-DCUDA_FLAGS=-arch=sm_{0}'.format(cuda_arch))
else:
# Ensure build with cuda is disabled
args.append("-DWITH_CUDA=OFF")
args.append('-DWITH_CUDA=OFF')
...
return args
@@ -125,7 +122,7 @@ You will need to customize options as needed for your build.
This example also illustrates how to check for the ``cuda`` variant using
``self.spec`` and how to retrieve the ``cuda_arch`` variant's value, which
is a list, using ``self.spec.variants["cuda_arch"].value``.
is a list, using ``self.spec.variants['cuda_arch'].value``.
With over 70 packages using ``CudaPackage`` as of January 2021 there are
lots of examples to choose from to get more ideas for using this package.

View File

@@ -1,4 +1,4 @@
.. Copyright 2013-2023 Lawrence Livermore National Security, LLC and other
.. Copyright 2013-2022 Lawrence Livermore National Security, LLC and other
Spack Project Developers. See the top-level COPYRIGHT file for details.
SPDX-License-Identifier: (Apache-2.0 OR MIT)
@@ -57,13 +57,13 @@ If you look at the ``perl`` package, you'll see:
.. code-block:: python
phases = ["configure", "build", "install"]
phases = ['configure', 'build', 'install']
Similarly, ``cmake`` defines:
.. code-block:: python
phases = ["bootstrap", "build", "install"]
phases = ['bootstrap', 'build', 'install']
If we look at the ``cmake`` example, this tells Spack's ``PackageBase``
class to run the ``bootstrap``, ``build``, and ``install`` functions
@@ -78,7 +78,7 @@ If we look at ``perl``, we see that it defines a ``configure`` method:
.. code-block:: python
def configure(self, spec, prefix):
configure = Executable("./Configure")
configure = Executable('./Configure')
configure(*self.configure_args())
There is also a corresponding ``configure_args`` function that handles
@@ -92,7 +92,7 @@ phases are pretty simple:
make()
def install(self, spec, prefix):
make("install")
make('install')
The ``cmake`` package looks very similar, but with a ``bootstrap``
function instead of ``configure``:
@@ -100,14 +100,14 @@ function instead of ``configure``:
.. code-block:: python
def bootstrap(self, spec, prefix):
bootstrap = Executable("./bootstrap")
bootstrap = Executable('./bootstrap')
bootstrap(*self.bootstrap_args())
def build(self, spec, prefix):
make()
def install(self, spec, prefix):
make("install")
make('install')
Again, there is a ``boostrap_args`` function that determines the
correct bootstrap flags to use.
@@ -128,16 +128,16 @@ before or after a particular phase. For example, in ``perl``, we see:
.. code-block:: python
@run_after("install")
@run_after('install')
def install_cpanm(self):
spec = self.spec
if spec.satisfies("+cpanm"):
with working_dir(join_path("cpanm", "cpanm")):
perl = spec["perl"].command
perl("Makefile.PL")
if '+cpanm' in spec:
with working_dir(join_path('cpanm', 'cpanm')):
perl = spec['perl'].command
perl('Makefile.PL')
make()
make("install")
make('install')
This extra step automatically installs ``cpanm`` in addition to the
base Perl installation.
@@ -174,10 +174,10 @@ In the ``perl`` package, we can see:
.. code-block:: python
@run_after("build")
@run_after('build')
@on_package_attributes(run_tests=True)
def test(self):
make("test")
make('test')
As you can guess, this runs ``make test`` *after* building the package,
if and only if testing is requested. Again, this is not specific to
@@ -189,7 +189,7 @@ custom build systems, it can be added to existing build systems as well.
.. code-block:: python
@run_after("install")
@run_after('install')
@on_package_attributes(run_tests=True)
works as expected. However, if you reverse the ordering:
@@ -197,7 +197,7 @@ custom build systems, it can be added to existing build systems as well.
.. code-block:: python
@on_package_attributes(run_tests=True)
@run_after("install")
@run_after('install')
the tests will always be run regardless of whether or not
``--test=root`` is requested. See https://github.com/spack/spack/issues/3833

View File

@@ -1,4 +1,4 @@
.. Copyright 2013-2023 Lawrence Livermore National Security, LLC and other
.. Copyright 2013-2022 Lawrence Livermore National Security, LLC and other
Spack Project Developers. See the top-level COPYRIGHT file for details.
SPDX-License-Identifier: (Apache-2.0 OR MIT)
@@ -6,9 +6,9 @@
.. _inteloneapipackage:
===========
IntelOneapi
===========
====================
IntelOneapiPackage
====================
.. contents::
@@ -25,18 +25,18 @@ use Spack to build packages with the tools.
The Spack Python class ``IntelOneapiPackage`` is a base class that is
used by ``IntelOneapiCompilers``, ``IntelOneapiMkl``,
``IntelOneapiTbb`` and other classes to implement the oneAPI
packages. Search for ``oneAPI`` at `<packages.spack.io>`_ for the full
list of available oneAPI packages, or use::
packages. See the :ref:`package-list` for the full list of available
oneAPI packages or use::
spack list -d oneAPI
For more information on a specific package, do::
spack info --all <package-name>
spack info <package-name>
Intel no longer releases new versions of Parallel Studio, which can be
used in Spack via the :ref:`intelpackage`. All of its components can
now be found in oneAPI.
now be found in oneAPI.
Examples
========
@@ -76,55 +76,6 @@ To build with with ``icx``, do ::
spack install patchelf%oneapi
Using oneAPI Spack environment
-------------------------------
In this example, we build lammps with ``icx`` using Spack environment for oneAPI packages created by Intel. The
compilers are installed with Spack like in example above.
Install the oneAPI compilers::
spack install intel-oneapi-compilers
Add the compilers to your ``compilers.yaml`` so Spack can use them::
spack compiler add `spack location -i intel-oneapi-compilers`/compiler/latest/linux/bin/intel64
spack compiler add `spack location -i intel-oneapi-compilers`/compiler/latest/linux/bin
Verify that the compilers are available::
spack compiler list
Clone `spack-configs <https://github.com/spack/spack-configs>`_ repo and activate Intel oneAPI CPU environment::
git clone https://github.com/spack/spack-configs
spack env activate spack-configs/INTEL/CPU
spack concretize -f
`Intel oneAPI CPU environment <https://github.com/spack/spack-configs/blob/main/INTEL/CPU/spack.yaml>`_ contains applications tested and validated by Intel, this list is constantly extended. And currently it supports:
- `Devito <https://www.devitoproject.org/>`_
- `GROMACS <https://www.gromacs.org/>`_
- `HPCG <https://www.hpcg-benchmark.org/>`_
- `HPL <https://netlib.org/benchmark/hpl/>`_
- `LAMMPS <https://www.lammps.org/#gsc.tab=0>`_
- `OpenFOAM <https://www.openfoam.com/>`_
- `Quantum Espresso <https://www.quantum-espresso.org/>`_
- `STREAM <https://www.cs.virginia.edu/stream/>`_
- `WRF <https://github.com/wrf-model/WRF>`_
To build lammps with oneAPI compiler from this environment just run::
spack install lammps
Compiled binaries can be find using::
spack cd -i lammps
You can do the same for all other applications from this environment.
Using oneAPI MPI to Satisfy a Virtual Dependence
------------------------------------------------------
@@ -133,8 +84,8 @@ build ``hdf5`` with Intel oneAPI MPI do::
spack install hdf5 +mpi ^intel-oneapi-mpi
Using Externally Installed oneAPI Tools
=======================================
Using an Externally Installed oneAPI
====================================
Spack can also use oneAPI tools that are manually installed with
`Intel Installers`_. The procedures for configuring Spack to use
@@ -159,7 +110,7 @@ Another option is to manually add the configuration to
Libraries
---------
If you want Spack to use oneMKL that you have installed without Spack in
If you want Spack to use MKL that you have installed without Spack in
the default location, then add the following to
``~/.spack/packages.yaml``, adjusting the version as appropriate::
@@ -173,7 +124,7 @@ Using oneAPI Tools Installed by Spack
=====================================
Spack can be a convenient way to install and configure compilers and
libraries, even if you do not intend to build a Spack package. If you
libaries, even if you do not intend to build a Spack package. If you
want to build a Makefile project using Spack-installed oneAPI compilers,
then use spack to configure your environment::
@@ -188,7 +139,7 @@ You can also use Spack-installed libraries. For example::
spack load intel-oneapi-mkl
Will update your environment CPATH, LIBRARY_PATH, and other
environment variables for building an application with oneMKL.
environment variables for building an application with MKL.
More information
================

View File

@@ -1,13 +1,13 @@
.. Copyright 2013-2023 Lawrence Livermore National Security, LLC and other
.. Copyright 2013-2022 Lawrence Livermore National Security, LLC and other
Spack Project Developers. See the top-level COPYRIGHT file for details.
SPDX-License-Identifier: (Apache-2.0 OR MIT)
.. _intelpackage:
-----
Intel
-----
------------
IntelPackage
------------
.. contents::
@@ -15,9 +15,6 @@ Intel
Intel packages in Spack
^^^^^^^^^^^^^^^^^^^^^^^^
This is an earlier version of Intel software development tools and has
now been replaced by Intel oneAPI Toolkits.
Spack can install and use several software development products offered by Intel.
Some of these are available under no-cost terms, others require a paid license.
All share the same basic steps for configuration, installation, and, where
@@ -392,12 +389,12 @@ See section
:ref:`Configuration Scopes <configuration-scopes>`
for an explanation about the different files
and section
:ref:`Build customization <packages-config>`
:ref:`Build customization <build-settings>`
for specifics and examples for ``packages.yaml`` files.
.. If your system administrator did not provide modules for pre-installed Intel
tools, you could do well to ask for them, because installing multiple copies
of the Intel tools, as is won't to happen once Spack is in the picture, is
of the Intel tools, as is wont to happen once Spack is in the picture, is
bound to stretch disk space and patience thin. If you *are* the system
administrator and are still new to modules, then perhaps it's best to follow
the `next section <Installing Intel tools within Spack_>`_ and install the tools
@@ -653,7 +650,7 @@ follow `the next section <intel-install-libs_>`_ instead.
* If you specified a custom variant (for example ``+vtune``) you may want to add this as your
preferred variant in the packages configuration for the ``intel-parallel-studio`` package
as described in :ref:`package-preferences`. Otherwise you will have to specify
the variant every time ``intel-parallel-studio`` is being used as ``mkl``, ``fftw`` or ``mpi``
the variant everytime ``intel-parallel-studio`` is being used as ``mkl``, ``fftw`` or ``mpi``
implementation to avoid pulling in a different variant.
* To set the Intel compilers for default use in Spack, instead of the usual ``%gcc``,

View File

@@ -1,15 +1,15 @@
.. Copyright 2013-2023 Lawrence Livermore National Security, LLC and other
.. Copyright 2013-2022 Lawrence Livermore National Security, LLC and other
Spack Project Developers. See the top-level COPYRIGHT file for details.
SPDX-License-Identifier: (Apache-2.0 OR MIT)
.. _luapackage:
---
Lua
---
------------
LuaPackage
------------
The ``Lua`` build-system is a helper for the common case of Lua packages that provide
LuaPackage is a helper for the common case of Lua packages that provide
a rockspec file. This is not meant to take a rock archive, but to build
a source archive or repository that provides a rockspec, which should cover
most lua packages. In the case a Lua package builds by Make rather than
@@ -19,7 +19,7 @@ luarocks, prefer MakefilePackage.
Phases
^^^^^^
The ``LuaBuilder`` and `LuaPackage`` base classes come with the following phases:
The ``LuaPackage`` base class comes with the following phases:
#. ``unpack`` - if using a rock, unpacks the rock and moves into the source directory
#. ``preprocess`` - adjust sources or rockspec to fix build

View File

@@ -1,13 +1,13 @@
.. Copyright 2013-2023 Lawrence Livermore National Security, LLC and other
.. Copyright 2013-2022 Lawrence Livermore National Security, LLC and other
Spack Project Developers. See the top-level COPYRIGHT file for details.
SPDX-License-Identifier: (Apache-2.0 OR MIT)
.. _makefilepackage:
--------
Makefile
--------
---------------
MakefilePackage
---------------
The most primitive build system a package can use is a plain Makefile.
Makefiles are simple to write for small projects, but they usually
@@ -18,7 +18,7 @@ variables.
Phases
^^^^^^
The ``MakefileBuilder`` and ``MakefilePackage`` base classes come with 3 phases:
The ``MakefilePackage`` base class comes with 3 phases:
#. ``edit`` - edit the Makefile
#. ``build`` - build the project
@@ -59,7 +59,7 @@ using GNU Make, you should add a dependency on ``gmake``:
.. code-block:: python
depends_on("gmake", type="build")
depends_on('gmake', type='build')
^^^^^^^^^^^^^^^^^^^^^^^^^^
@@ -93,8 +93,8 @@ there are any other variables you need to set, you can do this in the
.. code-block:: python
def edit(self, spec, prefix):
env["PREFIX"] = prefix
env["BLASLIB"] = spec["blas"].libs.ld_flags
env['PREFIX'] = prefix
env['BLASLIB'] = spec['blas'].libs.ld_flags
`cbench <https://github.com/spack/spack/blob/develop/var/spack/repos/builtin/packages/cbench/package.py>`_
@@ -113,7 +113,7 @@ you can do this like so:
.. code-block:: python
build_targets = ["CC=cc"]
build_targets = ['CC=cc']
If you do need access to the spec, you can create a property like so:
@@ -125,8 +125,8 @@ If you do need access to the spec, you can create a property like so:
spec = self.spec
return [
"CC=cc",
f"BLASLIB={spec['blas'].libs.ld_flags}",
'CC=cc',
'BLASLIB={0}'.format(spec['blas'].libs.ld_flags),
]
@@ -145,12 +145,12 @@ and a ``filter_file`` method to help with this. For example:
.. code-block:: python
def edit(self, spec, prefix):
makefile = FileFilter("Makefile")
makefile = FileFilter('Makefile')
makefile.filter(r"^\s*CC\s*=.*", f"CC = {spack_cc}")
makefile.filter(r"^\s*CXX\s*=.*", f"CXX = {spack_cxx}")
makefile.filter(r"^\s*F77\s*=.*", f"F77 = {spack_f77}")
makefile.filter(r"^\s*FC\s*=.*", f"FC = {spack_fc}")
makefile.filter(r'^\s*CC\s*=.*', 'CC = ' + spack_cc)
makefile.filter(r'^\s*CXX\s*=.*', 'CXX = ' + spack_cxx)
makefile.filter(r'^\s*F77\s*=.*', 'F77 = ' + spack_f77)
makefile.filter(r'^\s*FC\s*=.*', 'FC = ' + spack_fc)
`stream <https://github.com/spack/spack/blob/develop/var/spack/repos/builtin/packages/stream/package.py>`_
@@ -181,16 +181,16 @@ well for storing variables:
def edit(self, spec, prefix):
config = {
"CC": "cc",
"MAKE": "make",
'CC': 'cc',
'MAKE': 'make',
}
if spec.satisfies("+blas"):
config["BLAS_LIBS"] = spec["blas"].libs.joined()
if '+blas' in spec:
config['BLAS_LIBS'] = spec['blas'].libs.joined()
with open("make.inc", "w") as inc:
with open('make.inc', 'w') as inc:
for key in config:
inc.write(f"{key} = {config[key]}\n")
inc.write('{0} = {1}\n'.format(key, config[key]))
`elk <https://github.com/spack/spack/blob/develop/var/spack/repos/builtin/packages/elk/package.py>`_
@@ -204,14 +204,14 @@ them in a list:
def edit(self, spec, prefix):
config = [
f"INSTALL_DIR = {prefix}",
"INCLUDE_DIR = $(INSTALL_DIR)/include",
"LIBRARY_DIR = $(INSTALL_DIR)/lib",
'INSTALL_DIR = {0}'.format(prefix),
'INCLUDE_DIR = $(INSTALL_DIR)/include',
'LIBRARY_DIR = $(INSTALL_DIR)/lib',
]
with open("make.inc", "w") as inc:
with open('make.inc', 'w') as inc:
for var in config:
inc.write(f"{var}\n")
inc.write('{0}\n'.format(var))
`hpl <https://github.com/spack/spack/blob/develop/var/spack/repos/builtin/packages/hpl/package.py>`_
@@ -284,7 +284,7 @@ can tell Spack where to locate it like so:
.. code-block:: python
build_directory = "src"
build_directory = 'src'
^^^^^^^^^^^^^^^^^^^
@@ -299,8 +299,8 @@ install the package:
def install(self, spec, prefix):
mkdir(prefix.bin)
install("foo", prefix.bin)
install_tree("lib", prefix.lib)
install('foo', prefix.bin)
install_tree('lib', prefix.lib)
^^^^^^^^^^^^^^^^^^^^^^

View File

@@ -1,13 +1,13 @@
.. Copyright 2013-2023 Lawrence Livermore National Security, LLC and other
.. Copyright 2013-2022 Lawrence Livermore National Security, LLC and other
Spack Project Developers. See the top-level COPYRIGHT file for details.
SPDX-License-Identifier: (Apache-2.0 OR MIT)
.. _mavenpackage:
-----
Maven
-----
------------
MavenPackage
------------
Apache Maven is a general-purpose build system that does not rely
on Makefiles to build software. It is designed for building and
@@ -17,7 +17,7 @@ managing and Java-based project.
Phases
^^^^^^
The ``MavenBuilder`` and ``MavenPackage`` base classes come with the following phases:
The ``MavenPackage`` base class comes with the following phases:
#. ``build`` - compile code and package into a JAR file
#. ``install`` - copy to installation prefix

View File

@@ -1,13 +1,13 @@
.. Copyright 2013-2023 Lawrence Livermore National Security, LLC and other
.. Copyright 2013-2022 Lawrence Livermore National Security, LLC and other
Spack Project Developers. See the top-level COPYRIGHT file for details.
SPDX-License-Identifier: (Apache-2.0 OR MIT)
.. _mesonpackage:
-----
Meson
-----
------------
MesonPackage
------------
Much like Autotools and CMake, Meson is a build system. But it is
meant to be both fast and as user friendly as possible. GNOME's goal
@@ -17,7 +17,7 @@ is to port modules to use the Meson build system.
Phases
^^^^^^
The ``MesonBuilder`` and ``MesonPackage`` base classes come with the following phases:
The ``MesonPackage`` base class comes with the following phases:
#. ``meson`` - generate ninja files
#. ``build`` - build the project

View File

@@ -0,0 +1,350 @@
.. Copyright 2013-2022 Lawrence Livermore National Security, LLC and other
Spack Project Developers. See the top-level COPYRIGHT file for details.
SPDX-License-Identifier: (Apache-2.0 OR MIT)
.. _multiplepackage:
----------------------
Multiple Build Systems
----------------------
Quite frequently, a package will change build systems from one version to the
next. For example, a small project that once used a single Makefile to build
may now require Autotools to handle the increased number of files that need to
be compiled. Or, a package that once used Autotools may switch to CMake for
Windows support. In this case, it becomes a bit more challenging to write a
single build recipe for this package in Spack.
There are several ways that this can be handled in Spack:
#. Subclass the new build system, and override phases as needed (preferred)
#. Subclass ``Package`` and implement ``install`` as needed
#. Create separate ``*-cmake``, ``*-autotools``, etc. packages for each build system
#. Rename the old package to ``*-legacy`` and create a new package
#. Move the old package to a ``legacy`` repository and create a new package
#. Drop older versions that only support the older build system
Of these options, 1 is preferred, and will be demonstrated in this
documentation. Options 3-5 have issues with concretization, so shouldn't be
used. Options 4-5 also don't support more than two build systems. Option 6 only
works if the old versions are no longer needed. Option 1 is preferred over 2
because it makes it easier to drop the old build system entirely.
The exact syntax of the package depends on which build systems you need to
support. Below are a couple of common examples.
^^^^^^^^^^^^^^^^^^^^^
Makefile -> Autotools
^^^^^^^^^^^^^^^^^^^^^
Let's say we have the following package:
.. code-block:: python
class Foo(MakefilePackage):
version("1.2.0", sha256="...")
def edit(self, spec, prefix):
filter_file("CC=", "CC=" + spack_cc, "Makefile")
def install(self, spec, prefix):
install_tree(".", prefix)
The package subclasses from :ref:`makefilepackage`, which has three phases:
#. ``edit`` (does nothing by default)
#. ``build`` (runs ``make`` by default)
#. ``install`` (runs ``make install`` by default)
In this case, the ``install`` phase needed to be overridden because the
Makefile did not have an install target. We also modify the Makefile to use
Spack's compiler wrappers. The default ``build`` phase is not changed.
Starting with version 1.3.0, we want to use Autotools to build instead.
:ref:`autotoolspackage` has four phases:
#. ``autoreconf`` (does not if a configure script already exists)
#. ``configure`` (runs ``./configure --prefix=...`` by default)
#. ``build`` (runs ``make`` by default)
#. ``install`` (runs ``make install`` by default)
If the only version we need to support is 1.3.0, the package would look as
simple as:
.. code-block:: python
class Foo(AutotoolsPackage):
version("1.3.0", sha256="...")
def configure_args(self):
return ["--enable-shared"]
In this case, we use the default methods for each phase and only override
``configure_args`` to specify additional flags to pass to ``./configure``.
If we wanted to write a single package that supports both versions 1.2.0 and
1.3.0, it would look something like:
.. code-block:: python
class Foo(AutotoolsPackage):
version("1.3.0", sha256="...")
version("1.2.0", sha256="...", deprecated=True)
def configure_args(self):
return ["--enable-shared"]
# Remove the following once version 1.2.0 is dropped
@when("@:1.2")
def patch(self):
filter_file("CC=", "CC=" + spack_cc, "Makefile")
@when("@:1.2")
def autoreconf(self, spec, prefix):
pass
@when("@:1.2")
def configure(self, spec, prefix):
pass
@when("@:1.2")
def install(self, spec, prefix):
install_tree(".", prefix)
There are a few interesting things to note here:
* We added ``deprecated=True`` to version 1.2.0. This signifies that version
1.2.0 is deprecated and shouldn't be used. However, if a user still relies
on version 1.2.0, it's still there and builds just fine.
* We moved the contents of the ``edit`` phase to the ``patch`` function. Since
``AutotoolsPackage`` doesn't have an ``edit`` phase, the only way for this
step to be executed is to move it to the ``patch`` function, which always
gets run.
* The ``autoreconf`` and ``configure`` phases become no-ops. Since the old
Makefile-based build system doesn't use these, we ignore these phases when
building ``foo@1.2.0``.
* The ``@when`` decorator is used to override these phases only for older
versions. The default methods are used for ``foo@1.3:``.
Once a new Spack release comes out, version 1.2.0 and everything below the
comment can be safely deleted. The result is the same as if we had written a
package for version 1.3.0 from scratch.
^^^^^^^^^^^^^^^^^^
Autotools -> CMake
^^^^^^^^^^^^^^^^^^
Let's say we have the following package:
.. code-block:: python
class Bar(AutotoolsPackage):
version("1.2.0", sha256="...")
def configure_args(self):
return ["--enable-shared"]
The package subclasses from :ref:`autotoolspackage`, which has four phases:
#. ``autoreconf`` (does not if a configure script already exists)
#. ``configure`` (runs ``./configure --prefix=...`` by default)
#. ``build`` (runs ``make`` by default)
#. ``install`` (runs ``make install`` by default)
In this case, we use the default methods for each phase and only override
``configure_args`` to specify additional flags to pass to ``./configure``.
Starting with version 1.3.0, we want to use CMake to build instead.
:ref:`cmakepackage` has three phases:
#. ``cmake`` (runs ``cmake ...`` by default)
#. ``build`` (runs ``make`` by default)
#. ``install`` (runs ``make install`` by default)
If the only version we need to support is 1.3.0, the package would look as
simple as:
.. code-block:: python
class Bar(CMakePackage):
version("1.3.0", sha256="...")
def cmake_args(self):
return [self.define("BUILD_SHARED_LIBS", True)]
In this case, we use the default methods for each phase and only override
``cmake_args`` to specify additional flags to pass to ``cmake``.
If we wanted to write a single package that supports both versions 1.2.0 and
1.3.0, it would look something like:
.. code-block:: python
class Bar(CMakePackage):
version("1.3.0", sha256="...")
version("1.2.0", sha256="...", deprecated=True)
def cmake_args(self):
return [self.define("BUILD_SHARED_LIBS", True)]
# Remove the following once version 1.2.0 is dropped
def configure_args(self):
return ["--enable-shared"]
@when("@:1.2")
def cmake(self, spec, prefix):
configure("--prefix=" + prefix, *self.configure_args())
There are a few interesting things to note here:
* We added ``deprecated=True`` to version 1.2.0. This signifies that version
1.2.0 is deprecated and shouldn't be used. However, if a user still relies
on version 1.2.0, it's still there and builds just fine.
* Since CMake and Autotools are so similar, we only need to override the
``cmake`` phase, we can use the default ``build`` and ``install`` phases.
* We override ``cmake`` to run ``./configure`` for older versions.
``configure_args`` remains the same.
* The ``@when`` decorator is used to override these phases only for older
versions. The default methods are used for ``bar@1.3:``.
Once a new Spack release comes out, version 1.2.0 and everything below the
comment can be safely deleted. The result is the same as if we had written a
package for version 1.3.0 from scratch.
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
Multiple build systems for the same version
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
During the transition from one build system to another, developers often
support multiple build systems at the same time. Spack can only use a single
build system for a single version. To decide which build system to use for a
particular version, take the following things into account:
1. If the developers explicitly state that one build system is preferred over
another, use that one.
2. If one build system is considered "experimental" while another is considered
"stable", use the stable build system.
3. Otherwise, use the newer build system.
The developer preference for which build system to use can change over time as
a newer build system becomes stable/recommended.
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
Dropping support for old build systems
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
When older versions of a package don't support a newer build system, it can be
tempting to simply delete them from a package. This significantly reduces
package complexity and makes the build recipe much easier to maintain. However,
other packages or Spack users may rely on these older versions. The recommended
approach is to first support both build systems (as demonstrated above),
:ref:`deprecate <deprecate>` versions that rely on the old build system, and
remove those versions and any phases that needed to be overridden in the next
Spack release.
^^^^^^^^^^^^^^^^^^^^^^^^^^^
Three or more build systems
^^^^^^^^^^^^^^^^^^^^^^^^^^^
In rare cases, a package may change build systems multiple times. For example,
a package may start with Makefiles, then switch to Autotools, then switch to
CMake. The same logic used above can be extended to any number of build systems.
For example:
.. code-block:: python
class Baz(CMakePackage):
version("1.4.0", sha256="...") # CMake
version("1.3.0", sha256="...") # Autotools
version("1.2.0", sha256="...") # Makefile
def cmake_args(self):
return [self.define("BUILD_SHARED_LIBS", True)]
# Remove the following once version 1.3.0 is dropped
def configure_args(self):
return ["--enable-shared"]
@when("@1.3")
def cmake(self, spec, prefix):
configure("--prefix=" + prefix, *self.configure_args())
# Remove the following once version 1.2.0 is dropped
@when("@:1.2")
def patch(self):
filter_file("CC=", "CC=" + spack_cc, "Makefile")
@when("@:1.2")
def cmake(self, spec, prefix):
pass
@when("@:1.2")
def install(self, spec, prefix):
install_tree(".", prefix)
^^^^^^^^^^^^^^^^^^^
Additional examples
^^^^^^^^^^^^^^^^^^^
When writing new packages, it often helps to see examples of existing packages.
Here is an incomplete list of existing Spack packages that have changed build
systems before:
================ ===================== ================
Package Previous Build System New Build System
================ ===================== ================
amber custom CMake
arpack-ng Autotools CMake
atk Autotools Meson
blast None Autotools
dyninst Autotools CMake
evtgen Autotools CMake
fish Autotools CMake
gdk-pixbuf Autotools Meson
glib Autotools Meson
glog Autotools CMake
gmt Autotools CMake
gtkplus Autotools Meson
hpl Makefile Autotools
interproscan Perl Maven
jasper Autotools CMake
kahip SCons CMake
kokkos Makefile CMake
kokkos-kernels Makefile CMake
leveldb Makefile CMake
libdrm Autotools Meson
libjpeg-turbo Autotools CMake
mesa Autotools Meson
metis None CMake
mpifileutils Autotools CMake
muparser Autotools CMake
mxnet Makefile CMake
nest Autotools CMake
neuron Autotools CMake
nsimd CMake nsconfig
opennurbs Makefile CMake
optional-lite None CMake
plasma Makefile CMake
preseq Makefile Autotools
protobuf Autotools CMake
py-pygobject Autotools Python
singularity Autotools Makefile
span-lite None CMake
ssht Makefile CMake
string-view-lite None CMake
superlu Makefile CMake
superlu-dist Makefile CMake
uncrustify Autotools CMake
================ ===================== ================
Packages that support multiple build systems can be a bit confusing to write.
Don't hesitate to open an issue or draft pull request and ask for advice from
other Spack developers!

View File

@@ -1,13 +1,13 @@
.. Copyright 2013-2023 Lawrence Livermore National Security, LLC and other
.. Copyright 2013-2022 Lawrence Livermore National Security, LLC and other
Spack Project Developers. See the top-level COPYRIGHT file for details.
SPDX-License-Identifier: (Apache-2.0 OR MIT)
.. _octavepackage:
------
Octave
------
-------------
OctavePackage
-------------
Octave has its own build system for installing packages.
@@ -15,7 +15,7 @@ Octave has its own build system for installing packages.
Phases
^^^^^^
The ``OctaveBuilder`` and ``OctavePackage`` base classes have a single phase:
The ``OctavePackage`` base class has a single phase:
#. ``install`` - install the package

View File

@@ -1,13 +1,13 @@
.. Copyright 2013-2023 Lawrence Livermore National Security, LLC and other
.. Copyright 2013-2022 Lawrence Livermore National Security, LLC and other
Spack Project Developers. See the top-level COPYRIGHT file for details.
SPDX-License-Identifier: (Apache-2.0 OR MIT)
.. _perlpackage:
----
Perl
----
-----------
PerlPackage
-----------
Much like Octave, Perl has its own language-specific
build system.
@@ -16,7 +16,7 @@ build system.
Phases
^^^^^^
The ``PerlBuilder`` and ``PerlPackage`` base classes come with 3 phases that can be overridden:
The ``PerlPackage`` base class comes with 3 phases that can be overridden:
#. ``configure`` - configure the package
#. ``build`` - build the package

View File

@@ -1,13 +1,13 @@
.. Copyright 2013-2023 Lawrence Livermore National Security, LLC and other
.. Copyright 2013-2022 Lawrence Livermore National Security, LLC and other
Spack Project Developers. See the top-level COPYRIGHT file for details.
SPDX-License-Identifier: (Apache-2.0 OR MIT)
.. _pythonpackage:
------
Python
------
-------------
PythonPackage
-------------
Python packages and modules have their own special build system. This
documentation covers everything you'll need to know in order to write
@@ -48,11 +48,8 @@ important to understand.
**build backend**
Libraries used to define how to build a wheel. Examples
include `setuptools <https://setuptools.pypa.io/>`__,
`flit <https://flit.pypa.io/>`_,
`poetry <https://python-poetry.org/>`_,
`hatchling <https://hatch.pypa.io/latest/>`_,
`meson <https://meson-python.readthedocs.io/>`_, and
`pdm <https://pdm.fming.dev/latest/>`_.
`flit <https://flit.readthedocs.io/>`_, and
`poetry <https://python-poetry.org/>`_.
^^^^^^^^^^^
Downloading
@@ -152,16 +149,16 @@ set. Once set, ``pypi`` will be used to define the ``homepage``,
.. code-block:: python
homepage = "https://pypi.org/project/setuptools/"
url = "https://pypi.org/packages/source/s/setuptools/setuptools-49.2.0.zip"
list_url = "https://pypi.org/simple/setuptools/"
homepage = 'https://pypi.org/project/setuptools/'
url = 'https://pypi.org/packages/source/s/setuptools/setuptools-49.2.0.zip'
list_url = 'https://pypi.org/simple/setuptools/'
is equivalent to:
.. code-block:: python
pypi = "setuptools/setuptools-49.2.0.zip"
pypi = 'setuptools/setuptools-49.2.0.zip'
If a package has a different homepage listed on PyPI, you can
@@ -176,9 +173,9 @@ package. The "Project description" tab may also contain a longer
description of the package. Either of these can be used to populate
the package docstring.
^^^^^^^^^^^^
Dependencies
^^^^^^^^^^^^
^^^^^^^^^^^^^
Build backend
^^^^^^^^^^^^^
Once you've determined the basic metadata for a package, the next
step is to determine the build backend. ``PythonPackage`` uses
@@ -208,7 +205,7 @@ dependencies to your package:
.. code-block:: python
depends_on("py-setuptools@42:", type="build")
depends_on('py-setuptools@42:', type='build')
Note that ``py-wheel`` is already listed as a build dependency in the
@@ -216,33 +213,12 @@ Note that ``py-wheel`` is already listed as a build dependency in the
need to specify a specific version requirement or change the
dependency type.
See `PEP 517 <https://www.python.org/dev/peps/pep-0517/>`__ and
See `PEP 517 <https://www.python.org/dev/peps/pep-0517/>`_ and
`PEP 518 <https://www.python.org/dev/peps/pep-0518/>`_ for more
information on the design of ``pyproject.toml``.
Depending on which build backend a project uses, there are various
places that run-time dependencies can be listed. Most modern build
backends support listing dependencies directly in ``pyproject.toml``.
Look for dependencies under the following keys:
* ``requires-python`` under ``[project]``
This specifies the version of Python that is required
* ``dependencies`` under ``[project]``
These packages are required for building and installation. You can
add them with ``type=("build", "run")``.
* ``[project.optional-dependencies]``
This section includes keys with lists of optional dependencies
needed to enable those features. You should add a variant that
optionally adds these dependencies. This variant should be ``False``
by default.
Some build backends may have additional locations where dependencies
can be found.
places that run-time dependencies can be listed.
"""""""""
distutils
@@ -268,9 +244,9 @@ If the ``pyproject.toml`` lists ``setuptools.build_meta`` as a
``build-backend``, or if the package has a ``setup.py`` that imports
``setuptools``, or if the package has a ``setup.cfg`` file, then it
uses setuptools to build. Setuptools is a replacement for the
distutils library, and has almost the exact same API. In addition to
``pyproject.toml``, dependencies can be listed in the ``setup.py`` or
``setup.cfg`` file. Look for the following arguments:
distutils library, and has almost the exact same API. Dependencies
can be listed in the ``setup.py`` or ``setup.cfg`` file. Look for the
following arguments:
* ``python_requires``
@@ -279,12 +255,12 @@ distutils library, and has almost the exact same API. In addition to
* ``setup_requires``
These packages are usually only needed at build-time, so you can
add them with ``type="build"``.
add them with ``type='build'``.
* ``install_requires``
These packages are required for building and installation. You can
add them with ``type=("build", "run")``.
add them with ``type=('build', 'run')``.
* ``extras_require``
@@ -296,7 +272,7 @@ distutils library, and has almost the exact same API. In addition to
These are packages that are required to run the unit tests for the
package. These dependencies can be specified using the
``type="test"`` dependency type. However, the PyPI tarballs rarely
``type='test'`` dependency type. However, the PyPI tarballs rarely
contain unit tests, so there is usually no reason to add these.
See https://setuptools.pypa.io/en/latest/userguide/dependency_management.html
@@ -315,22 +291,25 @@ listed directly in the ``pyproject.toml`` file. Older versions of
flit used to store this info in a ``flit.ini`` file, so check for
this too.
In addition to the default ``pyproject.toml`` keys listed above,
older versions of flit may use the following keys:
Either of these files may contain keys like:
* ``requires`` under ``[tool.flit.metadata]``
* ``requires-python``
This specifies the version of Python that is required
* ``dependencies`` or ``requires``
These packages are required for building and installation. You can
add them with ``type=("build", "run")``.
add them with ``type=('build', 'run')``.
* ``[tool.flit.metadata.requires-extra]``
* ``project.optional-dependencies`` or ``requires-extra``
This section includes keys with lists of optional dependencies
needed to enable those features. You should add a variant that
optionally adds these dependencies. This variant should be False
by default.
See https://flit.pypa.io/en/latest/pyproject_toml.html for
See https://flit.readthedocs.io/en/latest/pyproject_toml.html for
more information.
""""""
@@ -347,38 +326,6 @@ for specifying the version requirements. Note that ``~=`` works
differently in poetry than in setuptools and flit for versions that
start with a zero.
"""""""""
hatchling
"""""""""
If the ``pyproject.toml`` lists ``hatchling.build`` as the
``build-backend``, it uses the hatchling build system. Hatchling
uses the default ``pyproject.toml`` keys to list dependencies.
See https://hatch.pypa.io/latest/config/dependency/ for more
information.
"""""
meson
"""""
If the ``pyproject.toml`` lists ``mesonpy`` as the ``build-backend``,
it uses the meson build system. Meson uses the default
``pyproject.toml`` keys to list dependencies.
See https://meson-python.readthedocs.io/en/latest/tutorials/introduction.html
for more information.
"""
pdm
"""
If the ``pyproject.toml`` lists ``pdm.pep517.api`` as the ``build-backend``,
it uses the PDM build system. PDM uses the default ``pyproject.toml``
keys to list dependencies.
See https://pdm.fming.dev/latest/ for more information.
""""""
wheels
""""""
@@ -423,34 +370,6 @@ packages. However, the installation instructions for a package may
suggest passing certain flags to the ``setup.py`` call. The
``PythonPackage`` class has two techniques for doing this.
"""""""""""""""
Config settings
"""""""""""""""
These settings are passed to
`PEP 517 <https://peps.python.org/pep-0517/>`__ build backends.
For example, ``py-scipy`` package allows you to specify the name of
the BLAS/LAPACK library you want pkg-config to search for:
.. code-block:: python
depends_on("py-pip@22.1:", type="build")
def config_settings(self, spec, prefix):
return {
"blas": spec["blas"].libs.names[0],
"lapack": spec["lapack"].libs.names[0],
}
.. note::
This flag only works for packages that define a ``build-backend``
in ``pyproject.toml``. Also, it is only supported by pip 22.1+,
which requires Python 3.7+. For packages that still support Python
3.6 and older, ``install_options`` should be used instead.
""""""""""""""
Global options
""""""""""""""
@@ -463,23 +382,13 @@ has an optional dependency on ``libyaml`` that can be enabled like so:
def global_options(self, spec, prefix):
options = []
if spec.satisfies("+libyaml"):
options.append("--with-libyaml")
if '+libyaml' in spec:
options.append('--with-libyaml')
else:
options.append("--without-libyaml")
options.append('--without-libyaml')
return options
.. note::
Direct invocation of ``setup.py`` is
`deprecated <https://blog.ganssle.io/articles/2021/10/setup-py-deprecated.html>`_.
This flag forces pip to use a deprecated installation procedure.
It should only be used in packages that don't define a
``build-backend`` in ``pyproject.toml`` or packages that still
support Python 3.6 and older.
"""""""""""""""
Install options
"""""""""""""""
@@ -492,24 +401,14 @@ allows you to specify the directories to search for ``libyaml``:
def install_options(self, spec, prefix):
options = []
if spec.satisfies("+libyaml"):
if '+libyaml' in spec:
options.extend([
spec["libyaml"].libs.search_flags,
spec["libyaml"].headers.include_flags,
spec['libyaml'].libs.search_flags,
spec['libyaml'].headers.include_flags,
])
return options
.. note::
Direct invocation of ``setup.py`` is
`deprecated <https://blog.ganssle.io/articles/2021/10/setup-py-deprecated.html>`_.
This flag forces pip to use a deprecated installation procedure.
It should only be used in packages that don't define a
``build-backend`` in ``pyproject.toml`` or packages that still
support Python 3.6 and older.
^^^^^^^
Testing
^^^^^^^
@@ -556,7 +455,7 @@ detected are wrong, you can provide the names yourself by overriding
.. code-block:: python
import_modules = ["six"]
import_modules = ['six']
Sometimes the list of module names to import depends on how the
@@ -571,9 +470,9 @@ This can be expressed like so:
@property
def import_modules(self):
modules = ["yaml"]
if self.spec.satisfies("+libyaml"):
modules.append("yaml.cyaml")
modules = ['yaml']
if '+libyaml' in self.spec:
modules.append('yaml.cyaml')
return modules
@@ -582,19 +481,6 @@ libraries. Make sure not to add modules/packages containing the word
"test", as these likely won't end up in the installation directory,
or may require test dependencies like pytest to be installed.
Instead of defining the ``import_modules`` explicitly, only the subset
of module names to be skipped can be defined by using ``skip_modules``.
If a defined module has submodules, they are skipped as well, e.g.,
in case the ``plotting`` modules should be excluded from the
automatically detected ``import_modules`` ``["nilearn", "nilearn.surface",
"nilearn.plotting", "nilearn.plotting.data"]`` set:
.. code-block:: python
skip_modules = ["nilearn.plotting"]
This will set ``import_modules`` to ``["nilearn", "nilearn.surface"]``
Import tests can be run during the installation using ``spack install
--test=root`` or at any time after the installation using
``spack test run``.
@@ -612,11 +498,11 @@ after the ``install`` phase:
.. code-block:: python
@run_after("install")
@run_after('install')
@on_package_attributes(run_tests=True)
def install_test(self):
with working_dir("spack-test", create=True):
python("-c", "import numpy; numpy.test('full', verbose=2)")
with working_dir('spack-test', create=True):
python('-c', 'import numpy; numpy.test("full", verbose=2)')
when testing is enabled during the installation (i.e., ``spack install
@@ -638,7 +524,7 @@ provides Python bindings in a ``python`` directory, you can use:
.. code-block:: python
build_directory = "python"
build_directory = 'python'
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
@@ -724,9 +610,10 @@ extends vs. depends_on
This is very similar to the naming dilemma above, with a slight twist.
As mentioned in the :ref:`Packaging Guide <packaging_extensions>`,
``extends`` and ``depends_on`` are very similar, but ``extends`` ensures
that the extension and extendee share the same prefix in views.
This allows the user to import a Python module without
``extends`` and ``depends_on`` are very similar, but ``extends`` adds
the ability to *activate* the package. Activation involves symlinking
everything in the installation prefix of the package to the installation
prefix of Python. This allows the user to import a Python module without
having to add that module to ``PYTHONPATH``.
When deciding between ``extends`` and ``depends_on``, the best rule of
@@ -734,7 +621,7 @@ thumb is to check the installation prefix. If Python libraries are
installed to ``<prefix>/lib/pythonX.Y/site-packages``, then you
should use ``extends``. If Python libraries are installed elsewhere
or the only files that get installed reside in ``<prefix>/bin``, then
don't use ``extends``.
don't use ``extends``, as symlinking the package wouldn't be useful.
^^^^^^^^^^^^^^^^^^^^^
Alternatives to Spack
@@ -777,8 +664,5 @@ For more information on build and installation frontend tools, see:
For more information on build backend tools, see:
* setuptools: https://setuptools.pypa.io/
* flit: https://flit.pypa.io/
* flit: https://flit.readthedocs.io/
* poetry: https://python-poetry.org/
* hatchling: https://hatch.pypa.io/latest/
* meson: https://meson-python.readthedocs.io/
* pdm: https://pdm.fming.dev/latest/

View File

@@ -1,13 +1,13 @@
.. Copyright 2013-2023 Lawrence Livermore National Security, LLC and other
.. Copyright 2013-2022 Lawrence Livermore National Security, LLC and other
Spack Project Developers. See the top-level COPYRIGHT file for details.
SPDX-License-Identifier: (Apache-2.0 OR MIT)
.. _qmakepackage:
-----
QMake
-----
------------
QMakePackage
------------
Much like Autotools and CMake, QMake is a build-script generator
designed by the developers of Qt. In its simplest form, Spack's
@@ -29,7 +29,7 @@ variables or edit ``*.pro`` files to get things working properly.
Phases
^^^^^^
The ``QMakeBuilder`` and ``QMakePackage`` base classes come with the following phases:
The ``QMakePackage`` base class comes with the following phases:
#. ``qmake`` - generate Makefiles
#. ``build`` - build the project

View File

@@ -1,13 +1,13 @@
.. Copyright 2013-2023 Lawrence Livermore National Security, LLC and other
.. Copyright 2013-2021 Lawrence Livermore National Security, LLC and other
Spack Project Developers. See the top-level COPYRIGHT file for details.
SPDX-License-Identifier: (Apache-2.0 OR MIT)
.. _racketpackage:
------
Racket
------
-------------
RacketPackage
-------------
Much like Python, Racket packages and modules have their own special build system.
To learn more about the specifics of Racket package system, please refer to the
@@ -17,7 +17,7 @@ To learn more about the specifics of Racket package system, please refer to the
Phases
^^^^^^
The ``RacketBuilder`` and ``RacketPackage`` base classes provides an ``install`` phase that
The ``RacketPackage`` base class provides an ``install`` phase that
can be overridden, corresponding to the use of:
.. code-block:: console

View File

@@ -1,13 +1,13 @@
.. Copyright 2013-2023 Lawrence Livermore National Security, LLC and other
.. Copyright 2013-2022 Lawrence Livermore National Security, LLC and other
Spack Project Developers. See the top-level COPYRIGHT file for details.
SPDX-License-Identifier: (Apache-2.0 OR MIT)
.. _rocmpackage:
----
ROCm
----
-----------
ROCmPackage
-----------
The ``ROCmPackage`` is not a build system but a helper package. Like ``CudaPackage``,
it provides standard variants, dependencies, and conflicts to facilitate building
@@ -25,7 +25,7 @@ This package provides the following variants:
* **rocm**
This variant is used to enable/disable building with ``rocm``.
This variant is used to enable/disable building with ``rocm``.
The default is disabled (or ``False``).
* **amdgpu_target**
@@ -81,27 +81,28 @@ class of your package. For example, you can add it to your
class MyRocmPackage(CMakePackage, ROCmPackage):
...
# Ensure +rocm and amdgpu_targets are passed to dependencies
depends_on("mydeppackage", when="+rocm")
depends_on('mydeppackage', when='+rocm')
for val in ROCmPackage.amdgpu_targets:
depends_on(f"mydeppackage amdgpu_target={val}",
when=f"amdgpu_target={val}")
depends_on('mydeppackage amdgpu_target={0}'.format(val),
when='amdgpu_target={0}'.format(val))
...
def cmake_args(self):
spec = self.spec
args = []
...
if spec.satisfies("+rocm"):
if '+rocm' in spec:
# Set up the hip macros needed by the build
args.extend([
"-DENABLE_HIP=ON",
f"-DHIP_ROOT_DIR={spec['hip'].prefix}"])
rocm_archs = spec.variants["amdgpu_target"].value
if "none" not in rocm_archs:
args.append(f"-DHIP_HIPCC_FLAGS=--amdgpu-target={','.join(rocm_archs}")
'-DENABLE_HIP=ON',
'-DHIP_ROOT_DIR={0}'.format(spec['hip'].prefix)])
rocm_archs = spec.variants['amdgpu_target'].value
if 'none' not in rocm_archs:
args.append('-DHIP_HIPCC_FLAGS=--amdgpu-target={0}'
.format(",".join(rocm_archs)))
else:
# Ensure build with hip is disabled
args.append("-DENABLE_HIP=OFF")
args.append('-DENABLE_HIP=OFF')
...
return args
...
@@ -113,7 +114,7 @@ build.
This example also illustrates how to check for the ``rocm`` variant using
``self.spec`` and how to retrieve the ``amdgpu_target`` variant's value
using ``self.spec.variants["amdgpu_target"].value``.
using ``self.spec.variants['amdgpu_target'].value``.
All five packages using ``ROCmPackage`` as of January 2021 also use the
:ref:`CudaPackage <cudapackage>`. So it is worth looking at those packages

View File

@@ -1,13 +1,13 @@
.. Copyright 2013-2023 Lawrence Livermore National Security, LLC and other
.. Copyright 2013-2022 Lawrence Livermore National Security, LLC and other
Spack Project Developers. See the top-level COPYRIGHT file for details.
SPDX-License-Identifier: (Apache-2.0 OR MIT)
.. _rpackage:
--
R
--
--------
RPackage
--------
Like Python, R has its own built-in build system.
@@ -19,7 +19,7 @@ new Spack packages for.
Phases
^^^^^^
The ``RBuilder`` and ``RPackage`` base classes have a single phase:
The ``RPackage`` base class has a single phase:
#. ``install`` - install the package
@@ -193,10 +193,10 @@ Build system dependencies
As an extension of the R ecosystem, your package will obviously depend
on R to build and run. Normally, we would use ``depends_on`` to express
this, but for R packages, we use ``extends``. This implies a special
dependency on R, which is used to set environment variables such as
``R_LIBS`` uniformly. Since every R package needs this, the ``RPackage``
base class contains:
this, but for R packages, we use ``extends``. ``extends`` is similar to
``depends_on``, but adds an additional feature: the ability to "activate"
the package by symlinking it to the R installation directory. Since
every R package needs this, the ``RPackage`` base class contains:
.. code-block:: python

View File

@@ -1,13 +1,13 @@
.. Copyright 2013-2023 Lawrence Livermore National Security, LLC and other
.. Copyright 2013-2022 Lawrence Livermore National Security, LLC and other
Spack Project Developers. See the top-level COPYRIGHT file for details.
SPDX-License-Identifier: (Apache-2.0 OR MIT)
.. _rubypackage:
----
Ruby
----
-----------
RubyPackage
-----------
Like Perl, Python, and R, Ruby has its own build system for
installing Ruby gems.
@@ -16,7 +16,7 @@ installing Ruby gems.
Phases
^^^^^^
The ``RubyBuilder`` and ``RubyPackage`` base classes provide the following phases that
The ``RubyPackage`` base class provides the following phases that
can be overridden:
#. ``build`` - build everything needed to install

View File

@@ -1,13 +1,13 @@
.. Copyright 2013-2023 Lawrence Livermore National Security, LLC and other
.. Copyright 2013-2022 Lawrence Livermore National Security, LLC and other
Spack Project Developers. See the top-level COPYRIGHT file for details.
SPDX-License-Identifier: (Apache-2.0 OR MIT)
.. _sconspackage:
-----
SCons
-----
------------
SConsPackage
------------
SCons is a general-purpose build system that does not rely on
Makefiles to build software. SCons is written in Python, and handles
@@ -42,7 +42,7 @@ As previously mentioned, SCons allows developers to add subcommands like
$ scons install
To facilitate this, the ``SConsBuilder`` and ``SconsPackage`` base classes provide the
To facilitate this, the ``SConsPackage`` base class provides the
following phases:
#. ``build`` - build the package
@@ -57,7 +57,7 @@ overridden like so:
.. code-block:: python
def test(self):
scons("check")
scons('check')
^^^^^^^^^^^^^^^
@@ -88,7 +88,7 @@ base class already contains:
.. code-block:: python
depends_on("scons", type="build")
depends_on('scons', type='build')
If you want to specify a particular version requirement, you can override
@@ -96,7 +96,7 @@ this in your package:
.. code-block:: python
depends_on("scons@2.3.0:", type="build")
depends_on('scons@2.3.0:', type='build')
^^^^^^^^^^^^^^^^^^^^^^^^^
@@ -238,14 +238,14 @@ the package build phase. This is done by overriding ``build_args`` like so:
def build_args(self, spec, prefix):
args = [
f"PREFIX={prefix}",
f"ZLIB={spec['zlib'].prefix}",
'PREFIX={0}'.format(prefix),
'ZLIB={0}'.format(spec['zlib'].prefix),
]
if spec.satisfies("+debug"):
args.append("DEBUG=yes")
if '+debug' in spec:
args.append('DEBUG=yes')
else:
args.append("DEBUG=no")
args.append('DEBUG=no')
return args
@@ -275,8 +275,8 @@ environment variables. For example, cantera has the following option:
* env_vars: [ string ]
Environment variables to propagate through to SCons. Either the
string "all" or a comma separated list of variable names, e.g.
"LD_LIBRARY_PATH,HOME".
- default: "LD_LIBRARY_PATH,PYTHONPATH"
'LD_LIBRARY_PATH,HOME'.
- default: 'LD_LIBRARY_PATH,PYTHONPATH'
In the case of cantera, using ``env_vars=all`` allows us to use

View File

@@ -1,13 +1,13 @@
.. Copyright 2013-2023 Lawrence Livermore National Security, LLC and other
.. Copyright 2013-2022 Lawrence Livermore National Security, LLC and other
Spack Project Developers. See the top-level COPYRIGHT file for details.
SPDX-License-Identifier: (Apache-2.0 OR MIT)
.. _sippackage:
---
SIP
---
----------
SIPPackage
----------
SIP is a tool that makes it very easy to create Python bindings for C and C++
libraries. It was originally developed to create PyQt, the Python bindings for
@@ -22,7 +22,7 @@ provides support functions to the automatically generated code.
Phases
^^^^^^
The ``SIPBuilder`` and ``SIPPackage`` base classes come with the following phases:
The ``SIPPackage`` base class comes with the following phases:
#. ``configure`` - configure the package
#. ``build`` - build the package
@@ -32,7 +32,7 @@ By default, these phases run:
.. code-block:: console
$ sip-build --verbose --target-dir ...
$ python configure.py --bindir ... --destdir ...
$ make
$ make install
@@ -41,30 +41,30 @@ By default, these phases run:
Important files
^^^^^^^^^^^^^^^
Each SIP package comes with a custom configuration file written in Python.
For newer packages, this is called ``project.py``, while in older packages,
it may be called ``configure.py``. This script contains instructions to build
the project.
Each SIP package comes with a custom ``configure.py`` build script,
written in Python. This script contains instructions to build the project.
^^^^^^^^^^^^^^^^^^^^^^^^^
Build system dependencies
^^^^^^^^^^^^^^^^^^^^^^^^^
``SIPPackage`` requires several dependencies. Python and SIP are needed at build-time
to run the aforementioned configure script. Python is also needed at run-time to
actually use the installed Python library. And as we are building Python bindings
for C/C++ libraries, Python is also needed as a link dependency. All of these
dependencies are automatically added via the base class.
``SIPPackage`` requires several dependencies. Python is needed to run
the ``configure.py`` build script, and to run the resulting Python
libraries. Qt is needed to provide the ``qmake`` command. SIP is also
needed to build the package. All of these dependencies are automatically
added via the base class
.. code-block:: python
extends("python", type=("build", "link", "run"))
depends_on("py-sip", type="build")
extends('python')
depends_on('qt', type='build')
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
Passing arguments to ``sip-build``
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
depends_on('py-sip', type='build')
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
Passing arguments to ``configure.py``
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
Each phase comes with a ``<phase_args>`` function that can be used to pass
arguments to that particular phase. For example, if you need to pass
@@ -72,11 +72,11 @@ arguments to the configure phase, you can use:
.. code-block:: python
def configure_args(self):
return ["--no-python-dbus"]
def configure_args(self, spec, prefix):
return ['--no-python-dbus']
A list of valid options can be found by running ``sip-build --help``.
A list of valid options can be found by running ``python configure.py --help``.
^^^^^^^
Testing

View File

@@ -1,55 +0,0 @@
.. Copyright 2013-2023 Lawrence Livermore National Security, LLC and other
Spack Project Developers. See the top-level COPYRIGHT file for details.
SPDX-License-Identifier: (Apache-2.0 OR MIT)
.. _sourceforgepackage:
-----------
Sourceforge
-----------
``SourceforgePackage`` is a
`mixin-class <https://en.wikipedia.org/wiki/Mixin>`_. It automatically
sets the URL based on a list of Sourceforge mirrors listed in
`sourceforge_mirror_path`, which defaults to a half dozen known mirrors.
Refer to the package source
(`<https://github.com/spack/spack/blob/develop/lib/spack/spack/build_systems/sourceforge.py>`__) for the current list of mirrors used by Spack.
^^^^^^^
Methods
^^^^^^^
This package provides a method for populating mirror URLs.
**urls**
This method returns a list of possible URLs for package source.
It is decorated with `property` so its results are treated as
a package attribute.
Refer to
`<https://spack.readthedocs.io/en/latest/packaging_guide.html#mirrors-of-the-main-url>`__
for information on how Spack uses the `urls` attribute during
fetching.
^^^^^
Usage
^^^^^
This helper package can be added to your package by adding it as a base
class of your package and defining the relative location of an archive
file for one version of your software.
.. code-block:: python
:emphasize-lines: 1,3
class MyPackage(AutotoolsPackage, SourceforgePackage):
...
sourceforge_mirror_path = "my-package/mypackage.1.0.0.tar.gz"
...
Over 40 packages are using ``SourceforcePackage`` this mix-in as of
July 2022 so there are multiple packages to choose from if you want
to see a real example.

View File

@@ -1,13 +1,13 @@
.. Copyright 2013-2023 Lawrence Livermore National Security, LLC and other
.. Copyright 2013-2022 Lawrence Livermore National Security, LLC and other
Spack Project Developers. See the top-level COPYRIGHT file for details.
SPDX-License-Identifier: (Apache-2.0 OR MIT)
.. _wafpackage:
---
Waf
---
----------
WafPackage
----------
Like SCons, Waf is a general-purpose build system that does not rely
on Makefiles to build software.
@@ -16,7 +16,7 @@ on Makefiles to build software.
Phases
^^^^^^
The ``WafBuilder`` and ``WafPackage`` base classes come with the following phases:
The ``WafPackage`` base class comes with the following phases:
#. ``configure`` - configure the project
#. ``build`` - build the project
@@ -58,7 +58,9 @@ Testing
``WafPackage`` also provides ``test`` and ``installtest`` methods,
which are run after the ``build`` and ``install`` phases, respectively.
By default, these phases do nothing, but you can override them to
run package-specific unit tests.
run package-specific unit tests. For example, the
`py-py2cairo <https://github.com/spack/spack/blob/develop/var/spack/repos/builtin/packages/py-py2cairo/package.py>`_
package uses:
.. code-block:: python

View File

@@ -1,4 +1,4 @@
.. Copyright 2013-2023 Lawrence Livermore National Security, LLC and other
.. Copyright 2013-2022 Lawrence Livermore National Security, LLC and other
Spack Project Developers. See the top-level COPYRIGHT file for details.
SPDX-License-Identifier: (Apache-2.0 OR MIT)

View File

@@ -1,4 +1,4 @@
# Copyright 2013-2023 Lawrence Livermore National Security, LLC and other
# Copyright 2013-2022 Lawrence Livermore National Security, LLC and other
# Spack Project Developers. See the top-level COPYRIGHT file for details.
#
# SPDX-License-Identifier: (Apache-2.0 OR MIT)
@@ -32,33 +32,37 @@
# If extensions (or modules to document with autodoc) are in another directory,
# add these directories to sys.path here. If the directory is relative to the
# documentation root, use os.path.abspath to make it absolute, like shown here.
link_name = os.path.abspath("_spack_root")
if not os.path.exists(link_name):
os.symlink(os.path.abspath("../../.."), link_name, target_is_directory=True)
sys.path.insert(0, os.path.abspath("_spack_root/lib/spack/external"))
sys.path.insert(0, os.path.abspath("_spack_root/lib/spack/external/_vendoring"))
sys.path.append(os.path.abspath("_spack_root/lib/spack/"))
sys.path.insert(0, os.path.abspath('_spack_root/lib/spack/external'))
sys.path.insert(0, os.path.abspath('_spack_root/lib/spack/external/pytest-fallback'))
if sys.version_info[0] < 3:
sys.path.insert(
0, os.path.abspath('_spack_root/lib/spack/external/yaml/lib'))
else:
sys.path.insert(
0, os.path.abspath('_spack_root/lib/spack/external/yaml/lib3'))
sys.path.append(os.path.abspath('_spack_root/lib/spack/'))
# Add the Spack bin directory to the path so that we can use its output in docs.
os.environ["SPACK_ROOT"] = os.path.abspath("_spack_root")
os.environ["PATH"] += "%s%s" % (os.pathsep, os.path.abspath("_spack_root/bin"))
os.environ['SPACK_ROOT'] = os.path.abspath('_spack_root')
os.environ['PATH'] += "%s%s" % (os.pathsep, os.path.abspath('_spack_root/bin'))
# Set an environment variable so that colify will print output like it would to
# a terminal.
os.environ["COLIFY_SIZE"] = "25x120"
os.environ["COLUMNS"] = "120"
os.environ['COLIFY_SIZE'] = '25x120'
os.environ['COLUMNS'] = '120'
# Generate full package list if needed
subprocess.call([
'spack', 'list', '--format=html', '--update=package_list.html'])
# Generate a command index if an update is needed
subprocess.call(
[
"spack",
"commands",
"--format=rst",
"--header=command_index.in",
"--update=command_index.rst",
]
+ glob("*rst")
)
subprocess.call([
'spack', 'commands',
'--format=rst',
'--header=command_index.in',
'--update=command_index.rst'] + glob('*rst'))
#
# Run sphinx-apidoc
@@ -68,34 +72,25 @@
# Without this, the API Docs will never actually update
#
apidoc_args = [
"--force", # Overwrite existing files
"--no-toc", # Don't create a table of contents file
"--output-dir=.", # Directory to place all output
"--module-first", # emit module docs before submodule docs
'--force', # Overwrite existing files
'--no-toc', # Don't create a table of contents file
'--output-dir=.', # Directory to place all output
]
sphinx_apidoc(
apidoc_args
+ [
"_spack_root/lib/spack/spack",
"_spack_root/lib/spack/spack/test/*.py",
"_spack_root/lib/spack/spack/test/cmd/*.py",
]
)
sphinx_apidoc(apidoc_args + ["_spack_root/lib/spack/llnl"])
sphinx_apidoc(apidoc_args + ['_spack_root/lib/spack/spack'])
sphinx_apidoc(apidoc_args + ['_spack_root/lib/spack/llnl'])
# Enable todo items
todo_include_todos = True
#
# Disable duplicate cross-reference warnings.
#
class PatchedPythonDomain(PythonDomain):
def resolve_xref(self, env, fromdocname, builder, typ, target, node, contnode):
if "refspecific" in node:
del node["refspecific"]
return super().resolve_xref(env, fromdocname, builder, typ, target, node, contnode)
if 'refspecific' in node:
del node['refspecific']
return super(PatchedPythonDomain, self).resolve_xref(
env, fromdocname, builder, typ, target, node, contnode)
#
# Disable tabs to space expansion in code blocks
@@ -108,57 +103,51 @@ def parse(self, inputstring, document):
inputstring = StringList(lines, document.current_source)
super().parse(inputstring, document)
def setup(sphinx):
sphinx.add_domain(PatchedPythonDomain, override=True)
sphinx.add_source_parser(NoTabExpansionRSTParser, override=True)
# -- General configuration -----------------------------------------------------
# If your documentation needs a minimal Sphinx version, state it here.
needs_sphinx = "3.4"
needs_sphinx = '3.4'
# Add any Sphinx extension module names here, as strings. They can be extensions
# coming with Sphinx (named 'sphinx.ext.*') or your custom ones.
extensions = [
"sphinx.ext.autodoc",
"sphinx.ext.graphviz",
"sphinx.ext.intersphinx",
"sphinx.ext.napoleon",
"sphinx.ext.todo",
"sphinx.ext.viewcode",
"sphinx_design",
"sphinxcontrib.programoutput",
'sphinx.ext.autodoc',
'sphinx.ext.graphviz',
'sphinx.ext.intersphinx',
'sphinx.ext.napoleon',
'sphinx.ext.todo',
'sphinx.ext.viewcode',
'sphinxcontrib.programoutput',
]
# Set default graphviz options
graphviz_dot_args = [
"-Grankdir=LR",
"-Gbgcolor=transparent",
"-Nshape=box",
"-Nfontname=monaco",
"-Nfontsize=10",
]
'-Grankdir=LR', '-Gbgcolor=transparent',
'-Nshape=box', '-Nfontname=monaco', '-Nfontsize=10']
# Get nice vector graphics
graphviz_output_format = "svg"
# Add any paths that contain templates here, relative to this directory.
templates_path = ["_templates"]
templates_path = ['_templates']
# The suffix of source filenames.
source_suffix = ".rst"
source_suffix = '.rst'
# The encoding of source files.
source_encoding = "utf-8-sig"
source_encoding = 'utf-8-sig'
# The master toctree document.
master_doc = "index"
master_doc = 'index'
# General information about the project.
project = "Spack"
copyright = "2013-2023, Lawrence Livermore National Laboratory."
project = u'Spack'
copyright = u'2013-2021, Lawrence Livermore National Laboratory.'
# The version info for the project you're documenting, acts as replacement for
# |version| and |release|, also used in various other places throughout the
@@ -167,16 +156,16 @@ def setup(sphinx):
# The short X.Y version.
import spack
version = ".".join(str(s) for s in spack.spack_version_info[:2])
version = '.'.join(str(s) for s in spack.spack_version_info[:2])
# The full version, including alpha/beta/rc tags.
release = spack.spack_version
# The language for content autogenerated by Sphinx. Refer to documentation
# for a list of supported languages.
# language = None
#language = None
# Places to look for .po/.mo files for doc translations
# locale_dirs = []
#locale_dirs = []
# Sphinx gettext settings
gettext_compact = True
@@ -184,182 +173,201 @@ def setup(sphinx):
# There are two options for replacing |today|: either, you set today to some
# non-false value, then it is used:
# today = ''
#today = ''
# Else, today_fmt is used as the format for a strftime call.
# today_fmt = '%B %d, %Y'
#today_fmt = '%B %d, %Y'
# List of patterns, relative to source directory, that match files and
# directories to ignore when looking for source files.
exclude_patterns = ["_build", "_spack_root", ".spack-env"]
exclude_patterns = ['_build', '_spack_root', '.spack-env']
nitpicky = True
nitpick_ignore = [
# Python classes that intersphinx is unable to resolve
("py:class", "argparse.HelpFormatter"),
("py:class", "contextlib.contextmanager"),
("py:class", "module"),
("py:class", "_io.BufferedReader"),
("py:class", "unittest.case.TestCase"),
("py:class", "_frozen_importlib_external.SourceFileLoader"),
("py:class", "clingo.Control"),
("py:class", "six.moves.urllib.parse.ParseResult"),
("py:class", "TextIO"),
("py:class", "hashlib._Hash"),
('py:class', 'argparse.HelpFormatter'),
('py:class', 'contextlib.contextmanager'),
('py:class', 'module'),
('py:class', '_io.BufferedReader'),
('py:class', 'unittest.case.TestCase'),
('py:class', '_frozen_importlib_external.SourceFileLoader'),
# Spack classes that are private and we don't want to expose
("py:class", "spack.provider_index._IndexBase"),
("py:class", "spack.repo._PrependFileLoader"),
("py:class", "spack.build_systems._checks.BaseBuilder"),
# Spack classes that intersphinx is unable to resolve
("py:class", "spack.version.StandardVersion"),
("py:class", "spack.spec.DependencySpec"),
("py:class", "spack.spec.InstallStatus"),
("py:class", "spack.spec.SpecfileReaderBase"),
("py:class", "spack.install_test.Pb"),
('py:class', 'spack.provider_index._IndexBase'),
('py:class', 'spack.repo._PrependFileLoader'),
]
# The reST default role (used for this markup: `text`) to use for all documents.
# default_role = None
#default_role = None
# If true, '()' will be appended to :func: etc. cross-reference text.
# add_function_parentheses = True
#add_function_parentheses = True
# If true, the current module name will be prepended to all description
# unit titles (such as .. function::).
# add_module_names = True
#add_module_names = True
# If true, sectionauthor and moduleauthor directives will be shown in the
# output. They are ignored by default.
# show_authors = False
sys.path.append("./_pygments")
pygments_style = "style.SpackStyle"
#show_authors = False
# The name of the Pygments (syntax highlighting) style to use.
# We use our own extension of the default style with a few modifications
from pygments.style import Style
from pygments.styles.default import DefaultStyle
from pygments.token import Comment, Generic, Text
class SpackStyle(DefaultStyle):
styles = DefaultStyle.styles.copy()
background_color = "#f4f4f8"
styles[Generic.Output] = "#355"
styles[Generic.Prompt] = "bold #346ec9"
import pkg_resources
dist = pkg_resources.Distribution(__file__)
sys.path.append('.') # make 'conf' module findable
ep = pkg_resources.EntryPoint.parse('spack = conf:SpackStyle', dist=dist)
dist._ep_map = {'pygments.styles': {'plugin1': ep}}
pkg_resources.working_set.add(dist)
pygments_style = 'spack'
# A list of ignored prefixes for module index sorting.
# modindex_common_prefix = []
#modindex_common_prefix = []
# -- Options for HTML output ---------------------------------------------------
# The theme to use for HTML and HTML Help pages. See the documentation for
# a list of builtin themes.
html_theme = "sphinx_rtd_theme"
html_theme = 'sphinx_rtd_theme'
# Theme options are theme-specific and customize the look and feel of a theme
# further. For a list of options available for each theme, see the
# documentation.
html_theme_options = {"logo_only": True}
html_theme_options = { 'logo_only' : True }
# Add any paths that contain custom themes here, relative to this directory.
# html_theme_path = ["_themes"]
# The name for this set of Sphinx documents. If None, it defaults to
# "<project> v<release> documentation".
# html_title = None
#html_title = None
# A shorter title for the navigation bar. Default is the same as html_title.
# html_short_title = None
#html_short_title = None
# The name of an image file (relative to this directory) to place at the top
# of the sidebar.
html_logo = "_spack_root/share/spack/logo/spack-logo-white-text.svg"
html_logo = '_spack_root/share/spack/logo/spack-logo-white-text.svg'
# The name of an image file (within the static path) to use as favicon of the
# docs. This file should be a Windows icon file (.ico) being 16x16 or 32x32
# pixels large.
html_favicon = "_spack_root/share/spack/logo/favicon.ico"
html_favicon = '_spack_root/share/spack/logo/favicon.ico'
# Add any paths that contain custom static files (such as style sheets) here,
# relative to this directory. They are copied after the builtin static files,
# so a file named "default.css" will overwrite the builtin "default.css".
html_static_path = ["_static"]
html_static_path = ['_static']
# If not '', a 'Last updated on:' timestamp is inserted at every page bottom,
# using the given strftime format.
html_last_updated_fmt = "%b %d, %Y"
html_last_updated_fmt = '%b %d, %Y'
# If true, SmartyPants will be used to convert quotes and dashes to
# typographically correct entities.
# html_use_smartypants = True
#html_use_smartypants = True
# Custom sidebar templates, maps document names to template names.
# html_sidebars = {}
#html_sidebars = {}
# Additional templates that should be rendered to pages, maps page names to
# template names.
# html_additional_pages = {}
#html_additional_pages = {}
# If false, no module index is generated.
# html_domain_indices = True
#html_domain_indices = True
# If false, no index is generated.
# html_use_index = True
#html_use_index = True
# If true, the index is split into individual pages for each letter.
# html_split_index = False
#html_split_index = False
# If true, links to the reST sources are added to the pages.
# html_show_sourcelink = True
#html_show_sourcelink = True
# If true, "Created using Sphinx" is shown in the HTML footer. Default is True.
# html_show_sphinx = False
#html_show_sphinx = False
# If true, "(C) Copyright ..." is shown in the HTML footer. Default is True.
# html_show_copyright = True
#html_show_copyright = True
# If true, an OpenSearch description file will be output, and all pages will
# contain a <link> tag referring to it. The value of this option must be the
# base URL from which the finished HTML is served.
# html_use_opensearch = ''
#html_use_opensearch = ''
# This is the file name suffix for HTML files (e.g. ".xhtml").
# html_file_suffix = None
#html_file_suffix = None
# Output file base name for HTML help builder.
htmlhelp_basename = "Spackdoc"
htmlhelp_basename = 'Spackdoc'
# -- Options for LaTeX output --------------------------------------------------
latex_elements = {
# The paper size ('letterpaper' or 'a4paper').
# 'papersize': 'letterpaper',
# The font size ('10pt', '11pt' or '12pt').
# 'pointsize': '10pt',
# Additional stuff for the LaTeX preamble.
# 'preamble': '',
# The paper size ('letterpaper' or 'a4paper').
#'papersize': 'letterpaper',
# The font size ('10pt', '11pt' or '12pt').
#'pointsize': '10pt',
# Additional stuff for the LaTeX preamble.
#'preamble': '',
}
# Grouping the document tree into LaTeX files. List of tuples
# (source start file, target name, title, author, documentclass [howto/manual]).
latex_documents = [("index", "Spack.tex", "Spack Documentation", "Todd Gamblin", "manual")]
latex_documents = [
('index', 'Spack.tex', u'Spack Documentation',
u'Todd Gamblin', 'manual'),
]
# The name of an image file (relative to this directory) to place at the top of
# the title page.
# latex_logo = None
#latex_logo = None
# For "manual" documents, if this is true, then toplevel headings are parts,
# not chapters.
# latex_use_parts = False
#latex_use_parts = False
# If true, show page references after internal links.
# latex_show_pagerefs = False
#latex_show_pagerefs = False
# If true, show URL addresses after external links.
# latex_show_urls = False
#latex_show_urls = False
# Documents to append as an appendix to all manuals.
# latex_appendices = []
#latex_appendices = []
# If false, no module index is generated.
# latex_domain_indices = True
#latex_domain_indices = True
# -- Options for manual page output --------------------------------------------
# One entry per manual page. List of tuples
# (source start file, name, description, authors, manual section).
man_pages = [("index", "spack", "Spack Documentation", ["Todd Gamblin"], 1)]
man_pages = [
('index', 'spack', u'Spack Documentation',
[u'Todd Gamblin'], 1)
]
# If true, show URL addresses after external links.
# man_show_urls = False
#man_show_urls = False
# -- Options for Texinfo output ------------------------------------------------
@@ -368,28 +376,24 @@ def setup(sphinx):
# (source start file, target name, title, author,
# dir menu entry, description, category)
texinfo_documents = [
(
"index",
"Spack",
"Spack Documentation",
"Todd Gamblin",
"Spack",
"One line description of project.",
"Miscellaneous",
)
('index', 'Spack', u'Spack Documentation',
u'Todd Gamblin', 'Spack', 'One line description of project.',
'Miscellaneous'),
]
# Documents to append as an appendix to all manuals.
# texinfo_appendices = []
#texinfo_appendices = []
# If false, no module index is generated.
# texinfo_domain_indices = True
#texinfo_domain_indices = True
# How to display URL addresses: 'footnote', 'no', or 'inline'.
# texinfo_show_urls = 'footnote'
#texinfo_show_urls = 'footnote'
# -- Extension configuration -------------------------------------------------
# sphinx.ext.intersphinx
intersphinx_mapping = {"python": ("https://docs.python.org/3", None)}
intersphinx_mapping = {
"python": ("https://docs.python.org/3", None),
}

View File

@@ -1,4 +1,4 @@
.. Copyright 2013-2023 Lawrence Livermore National Security, LLC and other
.. Copyright 2013-2022 Lawrence Livermore National Security, LLC and other
Spack Project Developers. See the top-level COPYRIGHT file for details.
SPDX-License-Identifier: (Apache-2.0 OR MIT)
@@ -19,9 +19,9 @@ see the default settings by looking at
These settings can be overridden in ``etc/spack/config.yaml`` or
``~/.spack/config.yaml``. See :ref:`configuration-scopes` for details.
---------------------
``install_tree:root``
---------------------
--------------------
``install_tree``
--------------------
The location where Spack will install packages and their dependencies.
Default is ``$spack/opt/spack``.
@@ -222,11 +222,11 @@ and location. (See the *Configuration settings* section of ``man
ccache`` to learn more about the default settings and how to change
them). Please note that we currently disable ccache's ``hash_dir``
feature to avoid an issue with the stage directory (see
https://github.com/spack/spack/pull/3761#issuecomment-294352232).
https://github.com/LLNL/spack/pull/3761#issuecomment-294352232).
-----------------------
``shared_linking:type``
-----------------------
------------------
``shared_linking``
------------------
Control whether Spack embeds ``RPATH`` or ``RUNPATH`` attributes in ELF binaries
so that they can find their dependencies. Has no effect on macOS.
@@ -245,76 +245,15 @@ the loading object.
DO NOT MIX the two options within the same install tree.
-----------------------
``shared_linking:bind``
-----------------------
This is an *experimental option* that controls whether Spack embeds absolute paths
to needed shared libraries in ELF executables and shared libraries on Linux. Setting
this option to ``true`` has two advantages:
1. **Improved startup time**: when running an executable, the dynamic loader does not
have to perform a search for needed libraries, they are loaded directly.
2. **Reliability**: libraries loaded at runtime are those that were linked to. This
minimizes the risk of accidentally picking up system libraries.
In the current implementation, Spack sets the soname (shared object name) of
libraries to their install path upon installation. This has two implications:
1. binding does not apply to libraries installed *before* the option was enabled;
2. toggling the option off does *not* prevent binding of libraries installed when
the option was still enabled.
It is also worth noting that:
1. Applications relying on ``dlopen(3)`` will continue to work, even when they open
a library by name. This is because ``RPATH``\s are retained in binaries also
when ``bind`` is enabled.
2. ``LD_PRELOAD`` continues to work for the typical use case of overriding
symbols, such as preloading a library with a more efficient ``malloc``.
However, the preloaded library will be loaded *additionally to*, instead of
*in place of* another library with the same name --- this can be problematic
in very rare cases where libraries rely on a particular ``init`` or ``fini``
order.
.. note::
In some cases packages provide *stub libraries* that only contain an interface
for linking, but lack an implementation for runtime. An example of this is
``libcuda.so``, provided by the CUDA toolkit; it can be used to link against,
but the library needed at runtime is the one installed with the CUDA driver.
To avoid binding those libraries, they can be marked as non-bindable using
a property in the package:
.. code-block:: python
class Example(Package):
non_bindable_shared_objects = ["libinterface.so"]
----------------------
``install_status``
``terminal_title``
----------------------
When set to ``true``, Spack will show information about its current progress
as well as the current and total package numbers. Progress is shown both
in the terminal title and inline. Setting it to ``false`` will not show any
progress information.
By setting this option to ``true``, Spack will update the terminal's title to
provide information about its current progress as well as the current and
total package numbers.
To work properly, this requires your terminal to reset its title after
Spack has finished its work, otherwise Spack's status information will
remain in the terminal's title indefinitely. Most terminals should already
be set up this way and clear Spack's status information.
-----------
``aliases``
-----------
Aliases can be used to define new Spack commands. They can be either shortcuts
for longer commands or include specific arguments for convenience. For instance,
if users want to use ``spack install``'s ``-v`` argument all the time, they can
create a new alias called ``inst`` that will always call ``install -v``:
.. code-block:: yaml
aliases:
inst: install -v

View File

@@ -1,4 +1,4 @@
.. Copyright 2013-2023 Lawrence Livermore National Security, LLC and other
.. Copyright 2013-2022 Lawrence Livermore National Security, LLC and other
Spack Project Developers. See the top-level COPYRIGHT file for details.
SPDX-License-Identifier: (Apache-2.0 OR MIT)
@@ -17,12 +17,11 @@ case you want to skip directly to specific docs:
* :ref:`config.yaml <config-yaml>`
* :ref:`mirrors.yaml <mirrors>`
* :ref:`modules.yaml <modules>`
* :ref:`packages.yaml <packages-config>`
* :ref:`packages.yaml <build-settings>`
* :ref:`repos.yaml <repositories>`
You can also add any of these as inline configuration in the YAML
manifest file (``spack.yaml``) describing an :ref:`environment
<environment-configuration>`.
You can also add any of these as inline configuration in ``spack.yaml``
in an :ref:`environment <environment-configuration>`.
-----------
YAML Format
@@ -228,9 +227,6 @@ You can get the name to use for ``<platform>`` by running ``spack arch
--platform``. The system config scope has a ``<platform>`` section for
sites at which ``/etc`` is mounted on multiple heterogeneous machines.
.. _config-scope-precedence:
----------------
Scope Precedence
----------------
@@ -243,11 +239,6 @@ lower-precedence settings. Completely ignoring higher-level configuration
options is supported with the ``::`` notation for keys (see
:ref:`config-overrides` below).
There are also special notations for string concatenation and precendense override.
Using the ``+:`` notation can be used to force *prepending* strings or lists. For lists, this is identical
to the default behavior. Using the ``-:`` works similarly, but for *appending* values.
:ref:`config-prepend-append`
^^^^^^^^^^^
Simple keys
^^^^^^^^^^^
@@ -288,47 +279,6 @@ command:
- ~/.spack/stage
.. _config-prepend-append:
^^^^^^^^^^^^^^^^^^^^
String Concatenation
^^^^^^^^^^^^^^^^^^^^
Above, the user ``config.yaml`` *completely* overrides specific settings in the
default ``config.yaml``. Sometimes, it is useful to add a suffix/prefix
to a path or name. To do this, you can use the ``-:`` notation for *append*
string concatenation at the end of a key in a configuration file. For example:
.. code-block:: yaml
:emphasize-lines: 1
:caption: ~/.spack/config.yaml
config:
install_tree-: /my/custom/suffix/
Spack will then append to the lower-precedence configuration under the
``install_tree-:`` section:
.. code-block:: console
$ spack config get config
config:
install_tree: /some/other/directory/my/custom/suffix
build_stage:
- $tempdir/$user/spack-stage
- ~/.spack/stage
Similarly, ``+:`` can be used to *prepend* to a path or name:
.. code-block:: yaml
:emphasize-lines: 1
:caption: ~/.spack/config.yaml
config:
install_tree+: /my/custom/suffix/
.. _config-overrides:
^^^^^^^^^^^^^^^^^^^^^^^^^^
@@ -444,7 +394,7 @@ are indicated at the start of the path with ``~`` or ``~user``.
Spack-specific variables
^^^^^^^^^^^^^^^^^^^^^^^^
Spack understands over a dozen special variables. These are:
Spack understands several special variables. These are:
* ``$env``: name of the currently active :ref:`environment <environments>`
* ``$spack``: path to the prefix of this Spack installation
@@ -455,19 +405,6 @@ Spack understands over a dozen special variables. These are:
* ``$user``: name of the current user
* ``$user_cache_path``: user cache directory (``~/.spack`` unless
:ref:`overridden <local-config-overrides>`)
* ``$architecture``: the architecture triple of the current host, as
detected by Spack.
* ``$arch``: alias for ``$architecture``.
* ``$platform``: the platform of the current host, as detected by Spack.
* ``$operating_system``: the operating system of the current host, as
detected by the ``distro`` python module.
* ``$os``: alias for ``$operating_system``.
* ``$target``: the ISA target for the current host, as detected by
ArchSpec. E.g. ``skylake`` or ``neoverse-n1``.
* ``$target_family``. The target family for the current host, as
detected by ArchSpec. E.g. ``x86_64`` or ``aarch64``.
* ``$date``: the current date in the format YYYY-MM-DD
Note that, as with shell variables, you can write these as ``$varname``
or with braces to distinguish the variable from surrounding characters:
@@ -612,7 +549,7 @@ down the problem:
You can see above that the ``build_jobs`` and ``debug`` settings are
built in and are not overridden by a configuration file. The
``verify_ssl`` setting comes from the ``--insecure`` option on the
``verify_ssl`` setting comes from the ``--insceure`` option on the
command line. ``dirty`` and ``install_tree`` come from the custom
scopes ``./my-scope`` and ``./my-scope-2``, and all other configuration
options come from the default configuration files that ship with Spack.

View File

@@ -1,4 +1,4 @@
.. Copyright 2013-2023 Lawrence Livermore National Security, LLC and other
.. Copyright 2013-2022 Lawrence Livermore National Security, LLC and other
Spack Project Developers. See the top-level COPYRIGHT file for details.
SPDX-License-Identifier: (Apache-2.0 OR MIT)
@@ -59,7 +59,7 @@ other techniques to minimize the size of the final image:
&& echo " specs:" \
&& echo " - gromacs+mpi" \
&& echo " - mpich" \
&& echo " concretizer:" \
&& echo " concretizer: together" \
&& echo " unify: true" \
&& echo " config:" \
&& echo " install_tree: /opt/software" \
@@ -109,10 +109,9 @@ Spack Images on Docker Hub
--------------------------
Docker images with Spack preinstalled and ready to be used are
built when a release is tagged, or nightly on ``develop``. The images
are then pushed both to `Docker Hub <https://hub.docker.com/u/spack>`_
and to `GitHub Container Registry <https://github.com/orgs/spack/packages?repo_name=spack>`_.
The OS that are currently supported are summarized in the table below:
built on `Docker Hub <https://hub.docker.com/u/spack>`_
at every push to ``develop`` or to a release branch. The OS that
are currently supported are summarized in the table below:
.. _containers-supported-os:
@@ -122,51 +121,22 @@ The OS that are currently supported are summarized in the table below:
* - Operating System
- Base Image
- Spack Image
* - Ubuntu 16.04
- ``ubuntu:16.04``
- ``spack/ubuntu-xenial``
* - Ubuntu 18.04
- ``ubuntu:18.04``
- ``spack/ubuntu-bionic``
* - Ubuntu 20.04
- ``ubuntu:20.04``
- ``spack/ubuntu-focal``
* - Ubuntu 22.04
- ``ubuntu:22.04``
- ``spack/ubuntu-jammy``
* - CentOS 7
- ``centos:7``
- ``spack/centos7``
* - CentOS Stream
- ``quay.io/centos/centos:stream``
- ``spack/centos-stream``
* - openSUSE Leap
- ``opensuse/leap``
- ``spack/leap15``
* - Amazon Linux 2
- ``amazonlinux:2``
- ``spack/amazon-linux``
* - AlmaLinux 8
- ``almalinux:8``
- ``spack/almalinux8``
* - AlmaLinux 9
- ``almalinux:9``
- ``spack/almalinux9``
* - Rocky Linux 8
- ``rockylinux:8``
- ``spack/rockylinux8``
* - Rocky Linux 9
- ``rockylinux:9``
- ``spack/rockylinux9``
* - Fedora Linux 37
- ``fedora:37``
- ``spack/fedora37``
* - Fedora Linux 38
- ``fedora:38``
- ``spack/fedora38``
All the images are tagged with the corresponding release of Spack:
.. image:: images/ghcr_spack.png
.. image:: dockerhub_spack.png
with the exception of the ``latest`` tag that points to the HEAD
of the ``develop`` branch. These images are available for anyone
@@ -212,12 +182,18 @@ under the ``container`` attribute of environments:
final:
- libgomp
# Extra instructions
extra_instructions:
final: |
RUN echo 'export PS1="\[$(tput bold)\]\[$(tput setaf 1)\][gromacs]\[$(tput setaf 2)\]\u\[$(tput sgr0)\]:\w $ "' >> ~/.bashrc
# Labels for the image
labels:
app: "gromacs"
mpi: "mpich"
A detailed description of the options available can be found in the :ref:`container_config_options` section.
A detailed description of the options available can be found in the
:ref:`container_config_options` section.
-------------------
Setting Base Images
@@ -458,127 +434,6 @@ attribute:
The minimum version of Singularity required to build a SIF (Singularity Image Format)
image from the recipes generated by Spack is ``3.5.3``.
------------------------------
Extending the Jinja2 Templates
------------------------------
The Dockerfile and the Singularity definition file that Spack can generate are based on
a few Jinja2 templates that are rendered according to the environment being containerized.
Even though Spack allows a great deal of customization by just setting appropriate values for
the configuration options, sometimes that is not enough.
In those cases, a user can directly extend the template that Spack uses to render the image
to e.g. set additional environment variables or perform specific operations either before or
after a given stage of the build. Let's consider as an example the following structure:
.. code-block:: console
$ tree /opt/environment
/opt/environment
├── data
│ └── data.csv
├── spack.yaml
├── data
└── templates
└── container
└── CustomDockerfile
containing both the custom template extension and the environment manifest file. To use a custom
template, the environment must register the directory containing it, and declare its use under the
``container`` configuration:
.. code-block:: yaml
:emphasize-lines: 7-8,12
spack:
specs:
- hdf5~mpi
concretizer:
unify: true
config:
template_dirs:
- /opt/environment/templates
container:
format: docker
depfile: true
template: container/CustomDockerfile
The template extension can override two blocks, named ``build_stage`` and ``final_stage``, similarly to
the example below:
.. code-block::
:emphasize-lines: 3,8
{% extends "container/Dockerfile" %}
{% block build_stage %}
RUN echo "Start building"
{{ super() }}
{% endblock %}
{% block final_stage %}
{{ super() }}
COPY data /share/myapp/data
{% endblock %}
The Dockerfile is generated by running:
.. code-block:: console
$ spack -e /opt/environment containerize
Note that the environment must be active for spack to read the template.
The recipe that gets generated contains the two extra instruction that we added in our template extension:
.. code-block:: Dockerfile
:emphasize-lines: 4,43
# Build stage with Spack pre-installed and ready to be used
FROM spack/ubuntu-jammy:latest as builder
RUN echo "Start building"
# What we want to install and how we want to install it
# is specified in a manifest file (spack.yaml)
RUN mkdir /opt/spack-environment \
&& (echo "spack:" \
&& echo " specs:" \
&& echo " - hdf5~mpi" \
&& echo " concretizer:" \
&& echo " unify: true" \
&& echo " config:" \
&& echo " template_dirs:" \
&& echo " - /tmp/environment/templates" \
&& echo " install_tree: /opt/software" \
&& echo " view: /opt/view") > /opt/spack-environment/spack.yaml
# Install the software, remove unnecessary deps
RUN cd /opt/spack-environment && spack env activate . && spack concretize && spack env depfile -o Makefile && make -j $(nproc) && spack gc -y
# Strip all the binaries
RUN find -L /opt/view/* -type f -exec readlink -f '{}' \; | \
xargs file -i | \
grep 'charset=binary' | \
grep 'x-executable\|x-archive\|x-sharedlib' | \
awk -F: '{print $1}' | xargs strip -s
# Modifications to the environment that are necessary to run
RUN cd /opt/spack-environment && \
spack env activate --sh -d . >> /etc/profile.d/z10_spack_environment.sh
# Bare OS image to run the installed executables
FROM ubuntu:22.04
COPY --from=builder /opt/spack-environment /opt/spack-environment
COPY --from=builder /opt/software /opt/software
COPY --from=builder /opt/._view /opt/._view
COPY --from=builder /opt/view /opt/view
COPY --from=builder /etc/profile.d/z10_spack_environment.sh /etc/profile.d/z10_spack_environment.sh
COPY data /share/myapp/data
ENTRYPOINT ["/bin/bash", "--rcfile", "/etc/profile", "-l", "-c", "$*", "--" ]
CMD [ "/bin/bash" ]
.. _container_config_options:
-----------------------
@@ -599,10 +454,6 @@ to customize the generation of container recipes:
- The format of the recipe
- ``docker`` or ``singularity``
- Yes
* - ``depfile``
- Whether to use a depfile for installation, or not
- True or False (default)
- No
* - ``images:os``
- Operating system used as a base for the image
- See :ref:`containers-supported-os`
@@ -637,7 +488,7 @@ to customize the generation of container recipes:
- No
* - ``os_packages:command``
- Tool used to manage system packages
- ``apt``, ``yum``, ``dnf``, ``dnf_epel``, ``zypper``, ``apk``, ``yum_amazon``
- ``apt``, ``yum``
- Only with custom base images
* - ``os_packages:update``
- Whether or not to update the list of available packages
@@ -651,6 +502,14 @@ to customize the generation of container recipes:
- System packages needed at run-time
- Valid packages for the current OS
- No
* - ``extra_instructions:build``
- Extra instructions (e.g. `RUN`, `COPY`, etc.) at the end of the ``build`` stage
- Anything understood by the current ``format``
- No
* - ``extra_instructions:final``
- Extra instructions (e.g. `RUN`, `COPY`, etc.) at the end of the ``final`` stage
- Anything understood by the current ``format``
- No
* - ``labels``
- Labels to tag the image
- Pairs of key-value strings

View File

@@ -1,4 +1,4 @@
.. Copyright 2013-2023 Lawrence Livermore National Security, LLC and other
.. Copyright 2013-2022 Lawrence Livermore National Security, LLC and other
Spack Project Developers. See the top-level COPYRIGHT file for details.
SPDX-License-Identifier: (Apache-2.0 OR MIT)
@@ -71,7 +71,7 @@ locally to speed up the review process.
new release that is causing problems. If this is the case, please file an issue.
We currently test against Python 2.7 and 3.6-3.10 on both macOS and Linux and
We currently test against Python 2.7 and 3.5-3.9 on both macOS and Linux and
perform 3 types of tests:
.. _cmd-spack-unit-test:
@@ -118,7 +118,7 @@ make another change, test that change, etc. We use `pytest
<http://pytest.org/>`_ as our tests framework, and these types of
arguments are just passed to the ``pytest`` command underneath. See `the
pytest docs
<https://doc.pytest.org/en/latest/how-to/usage.html#specifying-which-tests-to-run>`_
<http://doc.pytest.org/en/latest/usage.html#specifying-tests-selecting-tests>`_
for more details on test selection syntax.
``spack unit-test`` has a few special options that can help you
@@ -147,7 +147,7 @@ you want to know about. For example, to see just the tests in
You can also combine any of these options with a ``pytest`` keyword
search. See the `pytest usage docs
<https://doc.pytest.org/en/latest/how-to/usage.html#specifying-which-tests-to-run>`_
<https://docs.pytest.org/en/stable/usage.html#specifying-tests-selecting-tests>`_:
for more details on test selection syntax. For example, to see the names of all tests that have "spec"
or "concretize" somewhere in their names:
@@ -253,6 +253,27 @@ to update them.
multiple runs of ``spack style`` just to re-compute line numbers and
makes it much easier to fix errors directly off of the CI output.
.. warning::
Flake8 and ``pep8-naming`` require a number of dependencies in order
to run. If you installed ``py-flake8`` and ``py-pep8-naming``, the
easiest way to ensure the right packages are on your ``PYTHONPATH`` is
to run::
spack activate py-flake8
spack activate pep8-naming
so that all of the dependencies are symlinked to a central
location. If you see an error message like:
.. code-block:: console
Traceback (most recent call last):
File: "/usr/bin/flake8", line 5, in <module>
from pkg_resources import load_entry_point
ImportError: No module named pkg_resources
that means Flake8 couldn't find setuptools in your ``PYTHONPATH``.
^^^^^^^^^^^^^^^^^^^
Documentation Tests
@@ -288,9 +309,13 @@ All of these can be installed with Spack, e.g.
.. code-block:: console
$ spack load py-sphinx py-sphinx-rtd-theme py-sphinxcontrib-programoutput
$ spack activate py-sphinx
$ spack activate py-sphinx-rtd-theme
$ spack activate py-sphinxcontrib-programoutput
so that all of the dependencies are added to PYTHONPATH. If you see an error message
so that all of the dependencies are symlinked into that Python's
tree. Alternatively, you could arrange for their library
directories to be added to PYTHONPATH. If you see an error message
like:
.. code-block:: console
@@ -310,11 +335,53 @@ Once all of the dependencies are installed, you can try building the documentati
$ make clean
$ make
If you see any warning or error messages, you will have to correct those before your PR
is accepted. If you are editing the documentation, you should be running the
documentation tests to make sure there are no errors. Documentation changes can result
in some obfuscated warning messages. If you don't understand what they mean, feel free
to ask when you submit your PR.
If you see any warning or error messages, you will have to correct those before
your PR is accepted.
If you are editing the documentation, you should obviously be running the
documentation tests. But even if you are simply adding a new package, your
changes could cause the documentation tests to fail:
.. code-block:: console
package_list.rst:8745: WARNING: Block quote ends without a blank line; unexpected unindent.
At first, this error message will mean nothing to you, since you didn't edit
that file. Until you look at line 8745 of the file in question:
.. code-block:: rst
Description:
NetCDF is a set of software libraries and self-describing, machine-
independent data formats that support the creation, access, and sharing
of array-oriented scientific data.
Our documentation includes :ref:`a list of all Spack packages <package-list>`.
If you add a new package, its docstring is added to this page. The problem in
this case was that the docstring looked like:
.. code-block:: python
class Netcdf(Package):
"""
NetCDF is a set of software libraries and self-describing,
machine-independent data formats that support the creation,
access, and sharing of array-oriented scientific data.
"""
Docstrings cannot start with a newline character, or else Sphinx will complain.
Instead, they should look like:
.. code-block:: python
class Netcdf(Package):
"""NetCDF is a set of software libraries and self-describing,
machine-independent data formats that support the creation,
access, and sharing of array-oriented scientific data."""
Documentation changes can result in much more obfuscated warning messages.
If you don't understand what they mean, feel free to ask when you submit
your PR.
--------
Coverage

View File

@@ -1,4 +1,4 @@
.. Copyright 2013-2023 Lawrence Livermore National Security, LLC and other
.. Copyright 2013-2022 Lawrence Livermore National Security, LLC and other
Spack Project Developers. See the top-level COPYRIGHT file for details.
SPDX-License-Identifier: (Apache-2.0 OR MIT)
@@ -107,6 +107,7 @@ with a high level view of Spack's directory structure:
llnl/ <- some general-use libraries
spack/ <- spack module; contains Python code
analyzers/ <- modules to run analysis on installed packages
build_systems/ <- modules for different build systems
cmd/ <- each file in here is a spack subcommand
compilers/ <- compiler description files
@@ -149,9 +150,11 @@ grouped by functionality.
Package-related modules
^^^^^^^^^^^^^^^^^^^^^^^
:mod:`spack.package_base`
Contains the :class:`~spack.package_base.PackageBase` class, which
is the superclass for all packages in Spack.
:mod:`spack.package`
Contains the :class:`~spack.package.Package` class, which
is the superclass for all packages in Spack. Methods on ``Package``
implement all phases of the :ref:`package lifecycle
<package-lifecycle>` and manage the build process.
:mod:`spack.util.naming`
Contains functions for mapping between Spack package names,
@@ -175,11 +178,14 @@ Spec-related modules
^^^^^^^^^^^^^^^^^^^^
:mod:`spack.spec`
Contains :class:`~spack.spec.Spec`. Also implements most of the logic for concretization
Contains :class:`~spack.spec.Spec` and :class:`~spack.spec.SpecParser`.
Also implements most of the logic for normalization and concretization
of specs.
:mod:`spack.parser`
Contains :class:`~spack.parser.SpecParser` and functions related to parsing specs.
:mod:`spack.parse`
Contains some base classes for implementing simple recursive descent
parsers: :class:`~spack.parse.Parser` and :class:`~spack.parse.Lexer`.
Used by :class:`~spack.spec.SpecParser`.
:mod:`spack.concretize`
Contains :class:`~spack.concretize.Concretizer` implementation,
@@ -232,10 +238,26 @@ Spack Subcommands
Unit tests
^^^^^^^^^^
``spack.test``
:mod:`spack.test`
Implements Spack's test suite. Add a module and put its name in
the test suite in ``__init__.py`` to add more unit tests.
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
Research and Monitoring Modules
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
:mod:`spack.monitor`
Contains :class:`~spack.monitor.SpackMonitorClient`. This is accessed from
the ``spack install`` and ``spack analyze`` commands to send build and
package metadata up to a `Spack Monitor
<https://github.com/spack/spack-monitor>`_ server.
:mod:`spack.analyzers`
A module folder with a :class:`~spack.analyzers.analyzer_base.AnalyzerBase`
that provides base functions to run, save, and (optionally) upload analysis
results to a `Spack Monitor <https://github.com/spack/spack-monitor>`_ server.
^^^^^^^^^^^^^
Other Modules
@@ -279,6 +301,240 @@ Most spack commands look something like this:
The information in Package files is used at all stages in this
process.
Conceptually, packages are overloaded. They contain:
-------------
Stage objects
-------------
.. _writing-analyzers:
-----------------
Writing analyzers
-----------------
To write an analyzer, you should add a new python file to the
analyzers module directory at ``lib/spack/spack/analyzers`` .
Your analyzer should be a subclass of the :class:`AnalyzerBase <spack.analyzers.analyzer_base.AnalyzerBase>`. For example, if you want
to add an analyzer class ``Myanalyzer`` you would write to
``spack/analyzers/myanalyzer.py`` and import and
use the base as follows:
.. code-block:: python
from .analyzer_base import AnalyzerBase
class Myanalyzer(AnalyzerBase):
Note that the class name is your module file name, all lowercase
except for the first capital letter. You can look at other analyzers in
that analyzer directory for examples. The guide here will tell you about the basic functions needed.
^^^^^^^^^^^^^^^^^^^^^^^^^
Analyzer Output Directory
^^^^^^^^^^^^^^^^^^^^^^^^^
By default, when you run ``spack analyze run`` an analyzer output directory will
be created in your spack user directory in your ``$HOME``. The reason we output here
is because the install directory might not always be writable.
.. code-block:: console
~/.spack/
analyzers
Result files will be written here, organized in subfolders in the same structure
as the package, with each analyzer owning it's own subfolder. for example:
.. code-block:: console
$ tree ~/.spack/analyzers/
/home/spackuser/.spack/analyzers/
└── linux-ubuntu20.04-skylake
└── gcc-9.3.0
└── zlib-1.2.11-sl7m27mzkbejtkrajigj3a3m37ygv4u2
├── environment_variables
│   └── spack-analyzer-environment-variables.json
├── install_files
│   └── spack-analyzer-install-files.json
└── libabigail
└── lib
└── spack-analyzer-libabigail-libz.so.1.2.11.xml
Notice that for the libabigail analyzer, since results are generated per object,
we honor the object's folder in case there are equivalently named files in
different folders. The result files are typically written as json so they can be easily read and uploaded in a future interaction with a monitor.
^^^^^^^^^^^^^^^^^
Analyzer Metadata
^^^^^^^^^^^^^^^^^
Your analyzer is required to have the class attributes ``name``, ``outfile``,
and ``description``. These are printed to the user with they use the subcommand
``spack analyze list-analyzers``. Here is an example.
As we mentioned above, note that this analyzer would live in a module named
``libabigail.py`` in the analyzers folder so that the class can be discovered.
.. code-block:: python
class Libabigail(AnalyzerBase):
name = "libabigail"
outfile = "spack-analyzer-libabigail.json"
description = "Application Binary Interface (ABI) features for objects"
This means that the name and output file should be unique for your analyzer.
Note that "all" cannot be the name of an analyzer, as this key is used to indicate
that the user wants to run all analyzers.
.. _analyzer_run_function:
^^^^^^^^^^^^^^^^^^^^^^^^
An analyzer run Function
^^^^^^^^^^^^^^^^^^^^^^^^
The core of an analyzer is its ``run()`` function, which should accept no
arguments. You can assume your analyzer has the package spec of interest at ``self.spec``
and it's up to the run function to generate whatever analysis data you need,
and then return the object with a key as the analyzer name. The result data
should be a list of objects, each with a name, ``analyzer_name``, ``install_file``,
and one of ``value`` or ``binary_value``. The install file should be for a relative
path, and not the absolute path. For example, let's say we extract a metric called
``metric`` for ``bin/wget`` using our analyzer ``thebest-analyzer``.
We might have data that looks like this:
.. code-block:: python
result = {"name": "metric", "analyzer_name": "thebest-analyzer", "value": "1", "install_file": "bin/wget"}
We'd then return it as follows - note that they key is the analyzer name at ``self.name``.
.. code-block:: python
return {self.name: result}
This will save the complete result to the analyzer metadata folder, as described
previously. If you want support for adding a different kind of metadata (e.g.,
not associated with an install file) then the monitor server would need to be updated
to support this first.
^^^^^^^^^^^^^^^^^^^^^^^^^
An analyzer init Function
^^^^^^^^^^^^^^^^^^^^^^^^^
If you don't need any extra dependencies or checks, you can skip defining an analyzer
init function, as the base class will handle it. Typically, it will accept
a spec, and an optional output directory (if the user does not want the default
metadata folder for analyzer results). The analyzer init function should call
it's parent init, and then do any extra checks or validation that are required to
work. For example:
.. code-block:: python
def __init__(self, spec, dirname=None):
super(Myanalyzer, self).__init__(spec, dirname)
# install extra dependencies, do extra preparation and checks here
At the end of the init, you will have available to you:
- **self.spec**: the spec object
- **self.dirname**: an optional directory name the user as provided at init to save
- **self.output_dir**: the analyzer metadata directory, where we save by default
- **self.meta_dir**: the path to the package metadata directory (.spack) if you need it
And can proceed to write your analyzer.
^^^^^^^^^^^^^^^^^^^^^^^
Saving Analyzer Results
^^^^^^^^^^^^^^^^^^^^^^^
The analyzer will have ``save_result`` called, with the result object generated
to save it to the filesystem, and if the user has added the ``--monitor`` flag
to upload it to a monitor server. If your result follows an accepted result
format and you don't need to parse it further, you don't need to add this
function to your class. However, if your result data is large or otherwise
needs additional parsing, you can define it. If you define the function, it
is useful to know about the ``output_dir`` property, which you can join
with your output file relative path of choice:
.. code-block:: python
outfile = os.path.join(self.output_dir, "my-output-file.txt")
The directory will be provided by the ``output_dir`` property but it won't exist,
so you should create it:
.. code::block:: python
# Create the output directory
if not os.path.exists(self._output_dir):
os.makedirs(self._output_dir)
If you are generating results that match to specific files in the package
install directory, you should try to maintain those paths in the case that
there are equivalently named files in different directories that would
overwrite one another. As an example of an analyzer with a custom save,
the Libabigail analyzer saves ``*.xml`` files to the analyzer metadata
folder in ``run()``, as they are either binaries, or as xml (text) would
usually be too big to pass in one request. For this reason, the files
are saved during ``run()`` and the filenames added to the result object,
and then when the result object is passed back into ``save_result()``,
we skip saving to the filesystem, and instead read the file and send
each one (separately) to the monitor:
.. code-block:: python
def save_result(self, result, monitor=None, overwrite=False):
"""ABI results are saved to individual files, so each one needs to be
read and uploaded. Result here should be the lookup generated in run(),
the key is the analyzer name, and each value is the result file.
We currently upload the entire xml as text because libabigail can't
easily read gzipped xml, but this will be updated when it can.
"""
if not monitor:
return
name = self.spec.package.name
for obj, filename in result.get(self.name, {}).items():
# Don't include the prefix
rel_path = obj.replace(self.spec.prefix + os.path.sep, "")
# We've already saved the results to file during run
content = spack.monitor.read_file(filename)
# A result needs an analyzer, value or binary_value, and name
data = {"value": content, "install_file": rel_path, "name": "abidw-xml"}
tty.info("Sending result for %s %s to monitor." % (name, rel_path))
monitor.send_analyze_metadata(self.spec.package, {"libabigail": [data]})
Notice that this function, if you define it, requires a result object (generated by
``run()``, a monitor (if you want to send), and a boolean ``overwrite`` to be used
to check if a result exists first, and not write to it if the result exists and
overwrite is False. Also notice that since we already saved these files to the analyzer metadata folder, we return early if a monitor isn't defined, because this function serves to send results to the monitor. If you haven't saved anything to the analyzer metadata folder
yet, you might want to do that here. You should also use ``tty.info`` to give
the user a message of "Writing result to $DIRNAME."
.. _writing-commands:
@@ -443,6 +699,23 @@ with a hook, and this is the purpose of this particular hook. Akin to
``on_phase_success`` we require the same variables - the package that failed,
the name of the phase, and the log file where we might find errors.
"""""""""""""""""""""""""""""""""
``on_analyzer_save(pkg, result)``
"""""""""""""""""""""""""""""""""
After an analyzer has saved some result for a package, this hook is called,
and it provides the package that we just ran the analysis for, along with
the loaded result. Typically, a result is structured to have the name
of the analyzer as key, and the result object that is defined in detail in
:ref:`analyzer_run_function`.
.. code-block:: python
def on_analyzer_save(pkg, result):
"""given a package and a result...
"""
print('Do something extra with a package analysis result here')
^^^^^^^^^^^^^^^^^^^^^^
Adding a New Hook Type
@@ -472,7 +745,7 @@ use my new hook as follows:
.. code-block:: python
def post_log_write(message, level):
"""Do something custom with the message and level every time we write
"""Do something custom with the messsage and level every time we write
to the log
"""
print('running post_log_write!')
@@ -960,13 +1233,8 @@ completed, the steps to make the point release are:
$ git checkout releases/v0.15
#. If a pull request to the release branch named ``Backports vX.Y.Z`` is not already
in the project, create it. This pull request ought to be created as early as
possible when working on a release project, so that we can build the release
commits incrementally, and identify potential conflicts at an early stage.
#. Cherry-pick each pull request in the ``Done`` column of the release
project board onto the ``Backports vX.Y.Z`` pull request.
project board onto the release branch.
This is **usually** fairly simple since we squash the commits from the
vast majority of pull requests. That means there is only one commit
@@ -991,7 +1259,7 @@ completed, the steps to make the point release are:
It is important to cherry-pick commits in the order they happened,
otherwise you can get conflicts while cherry-picking. When
cherry-picking look at the merge date,
cherry-picking onto a point release, look at the merge date,
**not** the number of the pull request or the date it was opened.
Sometimes you may **still** get merge conflicts even if you have
@@ -1012,19 +1280,15 @@ completed, the steps to make the point release are:
branch if neither of the above options makes sense, but this can
require a lot of work. It's seldom the right choice.
#. When all the commits from the project board are cherry-picked into
the ``Backports vX.Y.Z`` pull request, you can push a commit to:
#. Bump the version in ``lib/spack/spack/__init__.py``.
1. Bump the version in ``lib/spack/spack/__init__.py``.
2. Update ``CHANGELOG.md`` with a list of the changes.
#. Update ``CHANGELOG.md`` with a list of the changes.
This is typically a summary of the commits you cherry-picked onto the
release branch. See `the changelog from 0.14.1
<https://github.com/spack/spack/commit/ff0abb9838121522321df2a054d18e54b566b44a>`_.
#. Merge the ``Backports vX.Y.Z`` PR with the **Rebase and merge** strategy. This
is needed to keep track in the release branch of all the commits that were
cherry-picked.
#. Push the release branch to GitHub.
#. Make sure CI passes on the release branch, including:
@@ -1043,8 +1307,6 @@ completed, the steps to make the point release are:
#. Follow the steps in :ref:`announcing-releases`.
#. Submit a PR to update the CHANGELOG in the `develop` branch
with the addition of this point release.
.. _publishing-releases:

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@@ -1,4 +1,4 @@
.. Copyright 2013-2023 Lawrence Livermore National Security, LLC and other
.. Copyright 2013-2022 Lawrence Livermore National Security, LLC and other
Spack Project Developers. See the top-level COPYRIGHT file for details.
SPDX-License-Identifier: (Apache-2.0 OR MIT)
@@ -58,9 +58,9 @@ Using Environments
Here we follow a typical use case of creating, concretizing,
installing and loading an environment.
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
Creating a managed Environment
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
^^^^^^^^^^^^^^^^^^^^^^^^^^^^
Creating a named Environment
^^^^^^^^^^^^^^^^^^^^^^^^^^^^
An environment is created by:
@@ -72,8 +72,7 @@ Spack then creates the directory ``var/spack/environments/myenv``.
.. note::
All managed environments by default are stored in the ``var/spack/environments`` folder.
This location can be changed by setting the ``environments_root`` variable in ``config.yaml``.
All named environments are stored in the ``var/spack/environments`` folder.
In the ``var/spack/environments/myenv`` directory, Spack creates the
file ``spack.yaml`` and the hidden directory ``.spack-env``.
@@ -94,9 +93,9 @@ an Environment, the ``.spack-env`` directory also contains:
* ``logs/``: A directory containing the build logs for the packages
in this Environment.
Spack Environments can also be created from either a manifest file
(usually but not necessarily named, ``spack.yaml``) or a lockfile.
To create an Environment from a manifest:
Spack Environments can also be created from either a ``spack.yaml``
manifest or a ``spack.lock`` lockfile. To create an Environment from a
``spack.yaml`` manifest:
.. code-block:: console
@@ -174,7 +173,7 @@ Anonymous specs can be created in place using the command:
$ spack env create -d .
In this case Spack simply creates a ``spack.yaml`` file in the requested
In this case Spack simply creates a spack.yaml file in the requested
directory.
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
@@ -234,8 +233,8 @@ packages will be listed as roots of the Environment.
All of the Spack commands that act on the list of installed specs are
Environment-sensitive in this way, including ``install``,
``uninstall``, ``find``, ``extensions``, and more. In the
:ref:`environment-configuration` section we will discuss
``uninstall``, ``activate``, ``deactivate``, ``find``, ``extensions``,
and more. In the :ref:`environment-configuration` section we will discuss
Environment-sensitive commands further.
^^^^^^^^^^^^^^^^^^^^^
@@ -347,7 +346,7 @@ the Environment and then install the concretized specs.
(see :ref:`build-jobs`). To speed up environment builds further, independent
packages can be installed in parallel by launching more Spack instances. For
example, the following will build at most four packages in parallel using
three background jobs:
three background jobs:
.. code-block:: console
@@ -377,30 +376,6 @@ from being added again. At the same time, a spec that already exists in the
environment, but only as a dependency, will be added to the environment as a
root spec without the ``--no-add`` option.
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
Developing Packages in a Spack Environment
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
The ``spack develop`` command allows one to develop Spack packages in
an environment. It requires a spec containing a concrete version, and
will configure Spack to install the package from local source. By
default, it will also clone the package to a subdirectory in the
environment. This package will have a special variant ``dev_path``
set, and Spack will ensure the package and its dependents are rebuilt
any time the environment is installed if the package's local source
code has been modified. Spack ensures that all instances of a
developed package in the environment are concretized to match the
version (and other constraints) passed as the spec argument to the
``spack develop`` command.
For packages with ``git`` attributes, git branches, tags, and commits can
also be used as valid concrete versions (see :ref:`version-specifier`).
This means that for a package ``foo``, ``spack develop foo@git.main`` will clone
the ``main`` branch of the package, and ``spack install`` will install from
that git clone if ``foo`` is in the environment.
Further development on ``foo`` can be tested by reinstalling the environment,
and eventually committed and pushed to the upstream git repo.
^^^^^^^
Loading
^^^^^^^
@@ -479,21 +454,14 @@ them to the Environment.
spack:
include:
- relative/path/to/config.yaml
- https://github.com/path/to/raw/config/compilers.yaml
- /absolute/path/to/packages.yaml
Environments can include files or URLs. File paths can be relative or
absolute. URLs include the path to the text for individual files or
can be the path to a directory containing configuration files.
^^^^^^^^^^^^^^^^^^^^^^^^
Configuration precedence
^^^^^^^^^^^^^^^^^^^^^^^^
Inline configurations take precedence over included configurations, so
you don't have to change shared configuration files to make small changes
to an individual environment. Included configurations listed earlier will
have higher precedence, as the included configs are applied in reverse order.
Environments can include files with either relative or absolute
paths. Inline configurations take precedence over included
configurations, so you don't have to change shared configuration files
to make small changes to an individual Environment. Included configs
listed earlier will have higher precedence, as the included configs are
applied in reverse order.
-------------------------------
Manually Editing the Specs List
@@ -520,49 +488,8 @@ available from the yaml file.
^^^^^^^^^^^^^^^^^^^
Spec concretization
^^^^^^^^^^^^^^^^^^^
An environment can be concretized in three different modes and the behavior active under
any environment is determined by the ``concretizer:unify`` configuration option.
The *default* mode is to unify all specs:
.. code-block:: yaml
spack:
specs:
- hdf5+mpi
- zlib@1.2.8
concretizer:
unify: true
This means that any package in the environment corresponds to a single concrete spec. In
the above example, when ``hdf5`` depends down the line of ``zlib``, it is required to
take ``zlib@1.2.8`` instead of a newer version. This mode of concretization is
particularly useful when environment views are used: if every package occurs in
only one flavor, it is usually possible to merge all install directories into a view.
A downside of unified concretization is that it can be overly strict. For example, a
concretization error would happen when both ``hdf5+mpi`` and ``hdf5~mpi`` are specified
in an environment.
The second mode is to *unify when possible*: this makes concretization of root specs
more independendent. Instead of requiring reuse of dependencies across different root
specs, it is only maximized:
.. code-block:: yaml
spack:
specs:
- hdf5~mpi
- hdf5+mpi
- zlib@1.2.8
concretizer:
unify: when_possible
This means that both ``hdf5`` installations will use ``zlib@1.2.8`` as a dependency even
if newer versions of that library are available.
The third mode of operation is to concretize root specs entirely independently by
disabling unified concretization:
An environment can be concretized in three different modes and the behavior active under any environment
is determined by the ``concretizer:unify`` property. By default specs are concretized *separately*, one after the other:
.. code-block:: yaml
@@ -574,26 +501,59 @@ disabling unified concretization:
concretizer:
unify: false
In this example ``hdf5`` is concretized separately, and does not consider ``zlib@1.2.8``
as a constraint or preference. Instead, it will take the latest possible version.
This mode of operation permits to deploy a full software stack where multiple configurations of the same package
need to be installed alongside each other using the best possible selection of transitive dependencies. The downside
is that redundancy of installations is disregarded completely, and thus environments might be more bloated than
strictly needed. In the example above, for instance, if a version of ``zlib`` newer than ``1.2.8`` is known to Spack,
then it will be used for both ``hdf5`` installations.
The last two concretization options are typically useful for system administrators and
user support groups providing a large software stack for their HPC center.
If redundancy of the environment is a concern, Spack provides a way to install it *together where possible*,
i.e. trying to maximize reuse of dependencies across different specs:
.. code-block:: yaml
spack:
specs:
- hdf5~mpi
- hdf5+mpi
- zlib@1.2.8
concretizer:
unify: when_possible
Also in this case Spack allows having multiple configurations of the same package, but privileges the reuse of
specs over other factors. Going back to our example, this means that both ``hdf5`` installations will use
``zlib@1.2.8`` as a dependency even if newer versions of that library are available.
Central installations done at HPC centers by system administrators or user support groups are a common case
that fits either of these two modes.
Environments can also be configured to concretize all the root specs *together*, in a self-consistent way, to
ensure that each package in the environment comes with a single configuration:
.. code-block:: yaml
spack:
specs:
- hdf5+mpi
- zlib@1.2.8
concretizer:
unify: true
This mode of operation is usually what is required by software developers that want to deploy their development
environment and have a single view of it in the filesystem.
.. note::
The ``concretizer:unify`` config option was introduced in Spack 0.18 to
replace the ``concretization`` property. For reference,
``concretization: together`` is replaced by ``concretizer:unify:true``,
and ``concretization: separately`` is replaced by ``concretizer:unify:false``.
``concretization: separately`` is replaced by ``concretizer:unify:true``,
and ``concretization: together`` is replaced by ``concretizer:unify:false``.
.. admonition:: Re-concretization of user specs
The ``spack concretize`` command without additional arguments will *not* change any
previously concretized specs. This may prevent it from finding a solution when using
``unify: true``, and it may prevent it from finding a minimal solution when using
``unify: when_possible``. You can force Spack to ignore the existing concrete environment
with ``spack concretize -f``.
When concretizing specs *together* or *together where possible* the entire set of specs will be
re-concretized after any addition of new user specs, to ensure that
the environment remains consistent / minimal. When instead the specs are concretized
separately only the new specs will be re-concretized after any addition.
^^^^^^^^^^^^^
Spec Matrices
@@ -632,6 +592,31 @@ The following two Environment manifests are identical:
Spec matrices can be used to install swaths of software across various
toolchains.
The concretization logic for spec matrices differs slightly from the
rest of Spack. If a variant or dependency constraint from a matrix is
invalid, Spack will reject the constraint and try again without
it. For example, the following two Environment manifests will produce
the same specs:
.. code-block:: yaml
spack:
specs:
- matrix:
- [zlib, libelf, hdf5+mpi]
- [^mvapich2@2.2, ^openmpi@3.1.0]
spack:
specs:
- zlib
- libelf
- hdf5+mpi ^mvapich2@2.2
- hdf5+mpi ^openmpi@3.1.0
This allows one to create toolchains out of combinations of
constraints and apply them somewhat indiscriminately to packages,
without regard for the applicability of the constraint.
^^^^^^^^^^^^^^^^^^^^
Spec List References
^^^^^^^^^^^^^^^^^^^^
@@ -814,7 +799,7 @@ directories.
select: [^mpi]
exclude: ['%pgi@18.5']
projections:
all: '{name}/{version}-{compiler.name}'
all: {name}/{version}-{compiler.name}
link: all
link_type: symlink
@@ -916,9 +901,9 @@ function, as shown in the example below:
.. code-block:: yaml
projections:
zlib: "{name}-{version}"
^mpi: "{name}-{version}/{^mpi.name}-{^mpi.version}-{compiler.name}-{compiler.version}"
all: "{name}-{version}/{compiler.name}-{compiler.version}"
zlib: {name}-{version}
^mpi: {name}-{version}/{^mpi.name}-{^mpi.version}-{compiler.name}-{compiler.version}
all: {name}-{version}/{compiler.name}-{compiler.version}
The entries in the projections configuration file must all be either
specs or the keyword ``all``. For each spec, the projection used will
@@ -963,6 +948,9 @@ Variable Paths
PATH bin
MANPATH man, share/man
ACLOCAL_PATH share/aclocal
LD_LIBRARY_PATH lib, lib64
LIBRARY_PATH lib, lib64
CPATH include
PKG_CONFIG_PATH lib/pkgconfig, lib64/pkgconfig, share/pkgconfig
CMAKE_PREFIX_PATH .
=================== =========
@@ -995,7 +983,7 @@ A typical workflow is as follows:
spack env create -d .
spack -e . add perl
spack -e . concretize
spack -e . env depfile -o Makefile
spack -e . env depfile > Makefile
make -j64
This generates a ``Makefile`` from a concretized environment in the
@@ -1008,6 +996,7 @@ load, even when packages are built in parallel.
By default the following phony convenience targets are available:
- ``make all``: installs the environment (default target);
- ``make fetch-all``: only fetch sources of all packages;
- ``make clean``: cleans files used by make, but does not uninstall packages.
.. tip::
@@ -1017,23 +1006,14 @@ By default the following phony convenience targets are available:
printed orderly per package install. To get synchronized output with colors,
use ``make -j<N> SPACK_COLOR=always --output-sync=recurse``.
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
Specifying dependencies on generated ``make`` targets
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
An interesting question is how to include generated ``Makefile``\s in your own
``Makefile``\s. This comes up when you want to install an environment that provides
executables required in a command for a make target of your own.
The example below shows how to accomplish this: the ``env`` target specifies
the generated ``spack/env`` target as a prerequisite, meaning that the environment
gets installed and is available for use in the ``env`` target.
The following advanced example shows how generated targets can be used in a
``Makefile``:
.. code:: Makefile
SPACK ?= spack
.PHONY: all clean env
.PHONY: all clean fetch env
all: env
@@ -1041,7 +1021,10 @@ gets installed and is available for use in the ``env`` target.
$(SPACK) -e . concretize -f
env.mk: spack.lock
$(SPACK) -e . env depfile -o $@ --make-prefix spack
$(SPACK) -e . env depfile -o $@ --make-target-prefix spack
fetch: spack/fetch
$(info Environment fetched!)
env: spack/env
$(info Environment installed!)
@@ -1053,10 +1036,11 @@ gets installed and is available for use in the ``env`` target.
include env.mk
endif
This works as follows: when ``make`` is invoked, it first "remakes" the missing
include ``env.mk`` as there is a target for it. This triggers concretization of
the environment and makes spack output ``env.mk``. At that point the
generated target ``spack/env`` becomes available through ``include env.mk``.
When ``make`` is invoked, it first "remakes" the missing include ``env.mk``
from its rule, which triggers concretization. When done, the generated targets
``spack/fetch`` and ``spack/env`` are available. In the above
example, the ``env`` target uses the latter as a prerequisite, meaning
that it can make use of the installed packages in its commands.
As it is typically undesirable to remake ``env.mk`` as part of ``make clean``,
the include is conditional.
@@ -1064,79 +1048,7 @@ the include is conditional.
.. note::
When including generated ``Makefile``\s, it is important to use
the ``--make-prefix`` flag and use the non-phony target
``<prefix>/env`` as prerequisite, instead of the phony target
``<prefix>/all``.
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
Building a subset of the environment
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
The generated ``Makefile``\s contain install targets for each spec, identified
by ``<name>-<version>-<hash>``. This allows you to install only a subset of the
packages in the environment. When packages are unique in the environment, it's
enough to know the name and let tab-completion fill out the version and hash.
The following phony targets are available: ``install/<spec>`` to install the
spec with its dependencies, and ``install-deps/<spec>`` to *only* install
its dependencies. This can be useful when certain flags should only apply to
dependencies. Below we show a use case where a spec is installed with verbose
output (``spack install --verbose``) while its dependencies are installed silently:
.. code:: console
$ spack env depfile -o Makefile
# Install dependencies in parallel, only show a log on error.
$ make -j16 install-deps/python-3.11.0-<hash> SPACK_INSTALL_FLAGS=--show-log-on-error
# Install the root spec with verbose output.
$ make -j16 install/python-3.11.0-<hash> SPACK_INSTALL_FLAGS=--verbose
^^^^^^^^^^^^^^^^^^^^^^^^^
Adding post-install hooks
^^^^^^^^^^^^^^^^^^^^^^^^^
Another advanced use-case of generated ``Makefile``\s is running a post-install
command for each package. These "hooks" could be anything from printing a
post-install message, running tests, or pushing just-built binaries to a buildcache.
This can be accomplished through the generated ``[<prefix>/]SPACK_PACKAGE_IDS``
variable. Assuming we have an active and concrete environment, we generate the
associated ``Makefile`` with a prefix ``example``:
.. code:: console
$ spack env depfile -o env.mk --make-prefix example
And we now include it in a different ``Makefile``, in which we create a target
``example/push/%`` with ``%`` referring to a package identifier. This target
depends on the particular package installation. In this target we automatically
have the target-specific ``HASH`` and ``SPEC`` variables at our disposal. They
are respectively the spec hash (excluding leading ``/``), and a human-readable spec.
Finally, we have an entrypoint target ``push`` that will update the buildcache
index once every package is pushed. Note how this target uses the generated
``example/SPACK_PACKAGE_IDS`` variable to define its prerequisites.
.. code:: Makefile
SPACK ?= spack
BUILDCACHE_DIR = $(CURDIR)/tarballs
.PHONY: all
all: push
include env.mk
example/push/%: example/install/%
@mkdir -p $(dir $@)
$(info About to push $(SPEC) to a buildcache)
$(SPACK) -e . buildcache push --allow-root --only=package $(BUILDCACHE_DIR) /$(HASH)
@touch $@
push: $(addprefix example/push/,$(example/SPACK_PACKAGE_IDS))
$(info Updating the buildcache index)
$(SPACK) -e . buildcache update-index $(BUILDCACHE_DIR)
$(info Done!)
@touch $@
the ``--make-target-prefix`` flag and use the non-phony targets
``<target-prefix>/env`` and ``<target-prefix>/fetch`` as
prerequisites, instead of the phony targets ``<target-prefix>/all``
and ``<target-prefix>/fetch-all`` respectively.

View File

@@ -1,4 +1,4 @@
.. Copyright 2013-2023 Lawrence Livermore National Security, LLC and other
.. Copyright 2013-2022 Lawrence Livermore National Security, LLC and other
Spack Project Developers. See the top-level COPYRIGHT file for details.
SPDX-License-Identifier: (Apache-2.0 OR MIT)

View File

@@ -1,4 +1,4 @@
.. Copyright 2013-2023 Lawrence Livermore National Security, LLC and other
.. Copyright 2013-2022 Lawrence Livermore National Security, LLC and other
Spack Project Developers. See the top-level COPYRIGHT file for details.
SPDX-License-Identifier: (Apache-2.0 OR MIT)
@@ -98,42 +98,40 @@ For example, this command:
.. code-block:: console
$ spack create https://ftp.osuosl.org/pub/blfs/conglomeration/libelf/libelf-0.8.13.tar.gz
$ spack create http://www.mr511.de/software/libelf-0.8.13.tar.gz
creates a simple python file:
.. code-block:: python
from spack.package import *
from spack import *
class Libelf(AutotoolsPackage):
class Libelf(Package):
"""FIXME: Put a proper description of your package here."""
# FIXME: Add a proper url for your package's homepage here.
homepage = "https://www.example.com"
url = "https://ftp.osuosl.org/pub/blfs/conglomeration/libelf/libelf-0.8.13.tar.gz"
homepage = "http://www.example.com"
url = "http://www.mr511.de/software/libelf-0.8.13.tar.gz"
# FIXME: Add a list of GitHub accounts to
# notify when the package is updated.
# maintainers("github_user1", "github_user2")
version("0.8.13", sha256="591a9b4ec81c1f2042a97aa60564e0cb79d041c52faa7416acb38bc95bd2c76d")
version('0.8.13', '4136d7b4c04df68b686570afa26988ac')
# FIXME: Add dependencies if required.
# depends_on("foo")
# depends_on('foo')
def configure_args(self):
# FIXME: Add arguments other than --prefix
# FIXME: If not needed delete this function
args = []
return args
def install(self, spec, prefix):
# FIXME: Modify the configure line to suit your build system here.
configure('--prefix={0}'.format(prefix))
# FIXME: Add logic to build and install here.
make()
make('install')
It doesn't take much python coding to get from there to a working
package:
.. literalinclude:: _spack_root/var/spack/repos/builtin/packages/libelf/package.py
:lines: 5-
:lines: 6-
Spack also provides wrapper functions around common commands like
``configure``, ``make``, and ``cmake`` to make writing packages

View File

@@ -1,77 +0,0 @@
.. Copyright 2013-2023 Lawrence Livermore National Security, LLC and other
Spack Project Developers. See the top-level COPYRIGHT file for details.
SPDX-License-Identifier: (Apache-2.0 OR MIT)
==========================
Frequently Asked Questions
==========================
This page contains answers to frequently asked questions about Spack.
If you have questions that are not answered here, feel free to ask on
`Slack <https://slack.spack.io>`_ or `GitHub Discussions
<https://github.com/spack/spack/discussions>`_. If you've learned the
answer to a question that you think should be here, please consider
contributing to this page.
.. _faq-concretizer-precedence:
-----------------------------------------------------
Why does Spack pick particular versions and variants?
-----------------------------------------------------
This question comes up in a variety of forms:
1. Why does Spack seem to ignore my package preferences from ``packages.yaml`` config?
2. Why does Spack toggle a variant instead of using the default from the ``package.py`` file?
The short answer is that Spack always picks an optimal configuration
based on a complex set of criteria\ [#f1]_. These criteria are more nuanced
than always choosing the latest versions or default variants.
.. note::
As a rule of thumb: requirements + constraints > reuse > preferences > defaults.
The following set of criteria (from lowest to highest precedence) explain
common cases where concretization output may seem surprising at first.
1. :ref:`Package preferences <package-preferences>` configured in ``packages.yaml``
override variant defaults from ``package.py`` files, and influence the optimal
ordering of versions. Preferences are specified as follows:
.. code-block:: yaml
packages:
foo:
version: [1.0, 1.1]
variants: ~mpi
2. :ref:`Reuse concretization <concretizer-options>` configured in ``concretizer.yaml``
overrides preferences, since it's typically faster to reuse an existing spec than to
build a preferred one from sources. When build caches are enabled, specs may be reused
from a remote location too. Reuse concretization is configured as follows:
.. code-block:: yaml
concretizer:
reuse: dependencies # other options are 'true' and 'false'
3. :ref:`Package requirements <package-requirements>` configured in ``packages.yaml``,
and constraints from the command line as well as ``package.py`` files override all
of the above. Requirements are specified as follows:
.. code-block:: yaml
packages:
foo:
require:
- "@1.2: +mpi"
Requirements and constraints restrict the set of possible solutions, while reuse
behavior and preferences influence what an optimal solution looks like.
.. rubric:: Footnotes
.. [#f1] The exact list of criteria can be retrieved with the ``spack solve`` command

View File

@@ -1,4 +1,4 @@
.. Copyright 2013-2023 Lawrence Livermore National Security, LLC and other
.. Copyright 2013-2022 Lawrence Livermore National Security, LLC and other
Spack Project Developers. See the top-level COPYRIGHT file for details.
SPDX-License-Identifier: (Apache-2.0 OR MIT)
@@ -21,36 +21,10 @@ be present on the machine where Spack is run:
:header-rows: 1
These requirements can be easily installed on most modern Linux systems;
on macOS, the Command Line Tools package is required, and a full XCode suite
may be necessary for some packages such as Qt and apple-gl. Spack is designed
to run on HPC platforms like Cray. Not all packages should be expected
to work on all platforms.
A build matrix showing which packages are working on which systems is shown below.
.. tab-set::
.. tab-item:: Debian/Ubuntu
.. code-block:: console
apt update
apt install build-essential ca-certificates coreutils curl environment-modules gfortran git gpg lsb-release python3 python3-distutils python3-venv unzip zip
.. tab-item:: RHEL
.. code-block:: console
dnf install epel-release
dnf group install "Development Tools"
dnf install curl findutils gcc-gfortran gnupg2 hostname iproute redhat-lsb-core python3 python3-pip python3-setuptools unzip python3-boto3
.. tab-item:: macOS Brew
.. code-block:: console
brew update
brew install curl gcc git gnupg zip
on macOS, XCode is required. Spack is designed to run on HPC
platforms like Cray. Not all packages should be expected
to work on all platforms. A build matrix showing which packages are
working on which systems is planned but not yet available.
------------
Installation
@@ -122,41 +96,88 @@ Spack provides two ways of bootstrapping ``clingo``: from pre-built binaries
(default), or from sources. The fastest way to get started is to bootstrap from
pre-built binaries.
The first time you concretize a spec, Spack will bootstrap automatically:
.. note::
When bootstrapping from pre-built binaries, Spack currently requires
``patchelf`` on Linux and ``otool`` on macOS. If ``patchelf`` is not in the
``PATH``, Spack will build it from sources, and a C++ compiler is required.
The first time you concretize a spec, Spack will bootstrap in the background:
.. code-block:: console
$ spack spec zlib
==> Bootstrapping clingo from pre-built binaries
==> Fetching https://mirror.spack.io/bootstrap/github-actions/v0.4/build_cache/linux-centos7-x86_64-gcc-10.2.1-clingo-bootstrap-spack-ba5ijauisd3uuixtmactc36vps7yfsrl.spec.json
==> Fetching https://mirror.spack.io/bootstrap/github-actions/v0.4/build_cache/linux-centos7-x86_64/gcc-10.2.1/clingo-bootstrap-spack/linux-centos7-x86_64-gcc-10.2.1-clingo-bootstrap-spack-ba5ijauisd3uuixtmactc36vps7yfsrl.spack
==> Installing "clingo-bootstrap@spack%gcc@10.2.1~docs~ipo+python+static_libstdcpp build_type=Release arch=linux-centos7-x86_64" from a buildcache
==> Bootstrapping patchelf from pre-built binaries
==> Fetching https://mirror.spack.io/bootstrap/github-actions/v0.4/build_cache/linux-centos7-x86_64-gcc-10.2.1-patchelf-0.16.1-p72zyan5wrzuabtmzq7isa5mzyh6ahdp.spec.json
==> Fetching https://mirror.spack.io/bootstrap/github-actions/v0.4/build_cache/linux-centos7-x86_64/gcc-10.2.1/patchelf-0.16.1/linux-centos7-x86_64-gcc-10.2.1-patchelf-0.16.1-p72zyan5wrzuabtmzq7isa5mzyh6ahdp.spack
==> Installing "patchelf@0.16.1%gcc@10.2.1 ldflags="-static-libstdc++ -static-libgcc" build_system=autotools arch=linux-centos7-x86_64" from a buildcache
$ time spack spec zlib
Input spec
--------------------------------
zlib
Concretized
--------------------------------
zlib@1.2.13%gcc@9.4.0+optimize+pic+shared build_system=makefile arch=linux-ubuntu20.04-icelake
zlib@1.2.11%gcc@7.5.0+optimize+pic+shared arch=linux-ubuntu18.04-zen
If for security concerns you cannot bootstrap ``clingo`` from pre-built
binaries, you have to disable fetching the binaries we generated with Github Actions.
real 0m20.023s
user 0m18.351s
sys 0m0.784s
After this command you'll see that ``clingo`` has been installed for Spack's own use:
.. code-block:: console
$ spack bootstrap disable github-actions-v0.4
==> "github-actions-v0.4" is now disabled and will not be used for bootstrapping
$ spack bootstrap disable github-actions-v0.3
==> "github-actions-v0.3" is now disabled and will not be used for bootstrapping
$ spack find -b
==> Showing internal bootstrap store at "/root/.spack/bootstrap/store"
==> 3 installed packages
-- linux-rhel5-x86_64 / gcc@9.3.0 -------------------------------
clingo-bootstrap@spack python@3.6
-- linux-ubuntu18.04-zen / gcc@7.5.0 ----------------------------
patchelf@0.13
Subsequent calls to the concretizer will then be much faster:
.. code-block:: console
$ time spack spec zlib
[ ... ]
real 0m0.490s
user 0m0.431s
sys 0m0.041s
If for security concerns you cannot bootstrap ``clingo`` from pre-built
binaries, you have to mark this bootstrapping method as untrusted. This makes
Spack fall back to bootstrapping from sources:
.. code-block:: console
$ spack bootstrap untrust github-actions-v0.2
==> "github-actions-v0.2" is now untrusted and will not be used for bootstrapping
You can verify that the new settings are effective with:
.. command-output:: spack bootstrap list
.. code-block:: console
$ spack bootstrap list
Name: github-actions-v0.2 UNTRUSTED
Type: buildcache
Info:
url: https://mirror.spack.io/bootstrap/github-actions/v0.2
homepage: https://github.com/spack/spack-bootstrap-mirrors
releases: https://github.com/spack/spack-bootstrap-mirrors/releases
Description:
Buildcache generated from a public workflow using Github Actions.
The sha256 checksum of binaries is checked before installation.
[ ... ]
Name: spack-install TRUSTED
Type: install
Description:
Specs built from sources by Spack. May take a long time.
.. note::
@@ -186,7 +207,9 @@ under the ``${HOME}/.spack`` directory. The software installed there can be quer
.. code-block:: console
$ spack -b find
$ spack find --bootstrap
==> Showing internal bootstrap store at "/home/spack/.spack/bootstrap/store"
==> 3 installed packages
-- linux-ubuntu18.04-x86_64 / gcc@10.1.0 ------------------------
clingo-bootstrap@spack python@3.6.9 re2c@1.2.1
@@ -195,7 +218,7 @@ In case it's needed the bootstrap store can also be cleaned with:
.. code-block:: console
$ spack clean -b
==> Removing bootstrapped software and configuration in "/home/spack/.spack/bootstrap"
==> Removing software in "/home/spack/.spack/bootstrap/store"
^^^^^^^^^^^^^^^^^^
Check Installation
@@ -317,7 +340,7 @@ installed, but you know that new compilers have been added to your
.. code-block:: console
$ module load gcc/4.9.0
$ module load gcc-4.9.0
$ spack compiler find
==> Added 1 new compiler to ~/.spack/linux/compilers.yaml
gcc@4.9.0
@@ -365,8 +388,7 @@ Manual compiler configuration
If auto-detection fails, you can manually configure a compiler by
editing your ``~/.spack/<platform>/compilers.yaml`` file. You can do this by running
``spack config edit compilers``, which will open the file in
:ref:`your favorite editor <controlling-the-editor>`.
``spack config edit compilers``, which will open the file in your ``$EDITOR``.
Each compiler configuration in the file looks like this:
@@ -1504,7 +1526,7 @@ Spack On Windows
Windows support for Spack is currently under development. While this work is still in an early stage,
it is currently possible to set up Spack and perform a few operations on Windows. This section will guide
you through the steps needed to install Spack and start running it on a fresh Windows machine.
you through the steps needed to install Spack and start running it on a fresh Windows machine.
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
Step 1: Install prerequisites
@@ -1514,7 +1536,7 @@ To use Spack on Windows, you will need the following packages:
Required:
* Microsoft Visual Studio
* Python
* Python
* Git
Optional:
@@ -1545,8 +1567,8 @@ Intel Fortran
"""""""""""""
For Fortran-based packages on Windows, we strongly recommend Intel's oneAPI Fortran compilers.
The suite is free to download from Intel's website, located at
https://software.intel.com/content/www/us/en/develop/tools/oneapi/components/fortran-compiler.html.
The suite is free to download from Intel's website, located at
https://software.intel.com/content/www/us/en/develop/tools/oneapi/components/fortran-compiler.html#gs.70t5tw.
The executable of choice for Spack will be Intel's Beta Compiler, ifx, which supports the classic
compiler's (ifort's) frontend and runtime libraries by using LLVM.
@@ -1595,8 +1617,8 @@ in a Windows CMD prompt.
.. note::
If you chose to install Spack into a directory on Windows that is set up to require Administrative
Privileges, Spack will require elevated privileges to run.
Administrative Privileges can be denoted either by default such as
Privleges, Spack will require elevated privleges to run.
Administrative Privleges can be denoted either by default such as
``C:\Program Files``, or aministrator applied administrative restrictions
on a directory that spack installs files to such as ``C:\Users``
@@ -1692,21 +1714,33 @@ Spack console via:
spack install cpuinfo
If in the previous step, you did not have CMake or Ninja installed, running the command above should bootstrap both packages
If in the previous step, you did not have CMake or Ninja installed, running the command above should boostrap both packages
"""""""""""""""""""""""""""
Windows Compatible Packages
"""""""""""""""""""""""""""
Not all spack packages currently have Windows support. Some are inherently incompatible with the
platform, and others simply have yet to be ported. To view the current set of packages with Windows
support, the list command should be used via `spack list -t windows`. If there's a package you'd like
to install on Windows but is not in that list, feel free to reach out to request the port or contribute
the port yourself.
Many Spack packages are not currently compatible with Windows, due to Unix
dependencies or incompatible build tools like autoconf. Here are several
packages known to work on Windows:
* abseil-cpp
* clingo
* cpuinfo
* cmake
* glm
* nasm
* netlib-lapack (requires Intel Fortran)
* ninja
* openssl
* perl
* python
* ruby
* wrf
* zlib
.. note::
This is by no means a comprehensive list, some packages may have ports that were not tagged
while others may just work out of the box on Windows and have not been tagged as such.
This is by no means a comprehensive list
^^^^^^^^^^^^^^
For developers
@@ -1718,4 +1752,3 @@ Instructions for creating the installer are at
https://github.com/spack/spack/blob/develop/lib/spack/spack/cmd/installer/README.md
Alternatively a pre-built copy of the Windows installer is available as an artifact of Spack's Windows CI
available at each run of the CI on develop or any PR.

View File

@@ -1,113 +0,0 @@
.. Copyright 2013-2023 Lawrence Livermore National Security, LLC and other
Spack Project Developers. See the top-level COPYRIGHT file for details.
SPDX-License-Identifier: (Apache-2.0 OR MIT)
==========================
Using External GPU Support
==========================
Many packages come with a ``+cuda`` or ``+rocm`` variant. With no added
configuration Spack will download and install the needed components.
It may be preferable to use existing system support: the following sections
help with using a system installation of GPU libraries.
-----------------------------------
Using an External ROCm Installation
-----------------------------------
Spack breaks down ROCm into many separate component packages. The following
is an example ``packages.yaml`` that organizes a consistent set of ROCm
components for use by dependent packages:
.. code-block:: yaml
packages:
all:
compiler: [rocmcc@=5.3.0]
variants: amdgpu_target=gfx90a
hip:
buildable: false
externals:
- spec: hip@5.3.0
prefix: /opt/rocm-5.3.0/hip
hsa-rocr-dev:
buildable: false
externals:
- spec: hsa-rocr-dev@5.3.0
prefix: /opt/rocm-5.3.0/
llvm-amdgpu:
buildable: false
externals:
- spec: llvm-amdgpu@5.3.0
prefix: /opt/rocm-5.3.0/llvm/
comgr:
buildable: false
externals:
- spec: comgr@5.3.0
prefix: /opt/rocm-5.3.0/
hipsparse:
buildable: false
externals:
- spec: hipsparse@5.3.0
prefix: /opt/rocm-5.3.0/
hipblas:
buildable: false
externals:
- spec: hipblas@5.3.0
prefix: /opt/rocm-5.3.0/
rocblas:
buildable: false
externals:
- spec: rocblas@5.3.0
prefix: /opt/rocm-5.3.0/
rocprim:
buildable: false
externals:
- spec: rocprim@5.3.0
prefix: /opt/rocm-5.3.0/rocprim/
This is in combination with the following compiler definition:
.. code-block:: yaml
compilers:
- compiler:
spec: rocmcc@=5.3.0
paths:
cc: /opt/rocm-5.3.0/bin/amdclang
cxx: /opt/rocm-5.3.0/bin/amdclang++
f77: null
fc: /opt/rocm-5.3.0/bin/amdflang
operating_system: rhel8
target: x86_64
This includes the following considerations:
- Each of the listed externals specifies ``buildable: false`` to force Spack
to use only the externals we defined.
- ``spack external find`` can automatically locate some of the ``hip``/``rocm``
packages, but not all of them, and furthermore not in a manner that
guarantees a complementary set if multiple ROCm installations are available.
- The ``prefix`` is the same for several components, but note that others
require listing one of the subdirectories as a prefix.
-----------------------------------
Using an External CUDA Installation
-----------------------------------
CUDA is split into fewer components and is simpler to specify:
.. code-block:: yaml
packages:
all:
variants:
- cuda_arch=70
cuda:
buildable: false
externals:
- spec: cuda@11.0.2
prefix: /opt/cuda/cuda-11.0.2/
where ``/opt/cuda/cuda-11.0.2/lib/`` contains ``libcudart.so``.

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