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377 Commits

Author SHA1 Message Date
Harmen Stoppels
eff56cd845 rocm-openmp-extras: do not mutate llvm-amdgpu 2025-02-13 15:46:09 +01:00
Harmen Stoppels
9747978c7f Spec.package_class -> spack.repo.PATH.get_pkg_class (#48985) 2025-02-12 11:52:04 +01:00
Harmen Stoppels
f043455ccc gmake: fix def libs/headers (#49009) 2025-02-12 11:07:55 +01:00
Harmen Stoppels
fb9d6427e6 package_hash.py: move metadata_attrs inline out of package_base (#48981) 2025-02-12 10:38:35 +01:00
Tara Drwenski
76e83e10c1 gmake: add empty libs property, remove link deptypes from dependents (#48995) 2025-02-12 10:16:30 +01:00
Massimiliano Culpo
af89bdf632 kokkos et al. : don't monkeypatch spec in callbacks (#48916)
Currently, a few packages using kokkos rely on
kokkos itself monkeypatching its own spec to
provide some attribute.

In this commit we change this attribute to be
defined on the package, and never be monkeypatched.
2025-02-12 07:27:49 +01:00
Adam J. Stewart
46f5b192ef PyTorch: build flash attention by default, except in CI (#48521)
* PyTorch: build flash attention by default, except in CI

* Variant is boolean, only available when +cuda/+rocm

* desc -> _desc
2025-02-11 13:20:10 -08:00
Harmen Stoppels
18cd922aab style.py: fix false negative in redundant import statements (#48980) 2025-02-11 19:30:50 +01:00
Massimiliano Culpo
5518ad9611 Fix performance issue on macOS (#48997)
archspec.cpu.host() is not memoized, so compute
it as less as possible.

---------

Co-authored-by: alalazo <alalazo@users.noreply.github.com>
2025-02-11 18:54:32 +01:00
Wouter Deconinck
57a1807443 hep: rivet: require hepmc=3 (#48976) 2025-02-11 01:33:45 -07:00
Harmen Stoppels
3909308d5c spack.util.elf: catch seek errors (#48972) 2025-02-11 08:52:52 +01:00
Massimiliano Culpo
54210270c8 concretizer: reduce search space with static analysis (#48729)
Currently, when we setup the ASP problem for `clingo`, we don't take into account the configuration. This results in setting up ASP problems that are larger than necessary, with possibly redundant information, and higher concretization times. 

This PR tries to improve things by adding an opt-in feature that computes the _possible dependencies_ of a solve taking also into account the current configuration, and avoids adding possible dependencies that we are certain can't be in the final solution.

The feature can be activated with:
```yaml
concretizer:
  static_analysis: true
```

Examples of simple rules to discard dependencies are:
- Dependencies that are not buildable, and for which no binary is present (e.g. `cray-mpich` etc. on non Cray systems)
- Dependencies that are not for the current platform (e.g. `msmpi` on non Windows platforms)
- Conditional dependencies that cannot be activated, because of some user requirement (e.g. `cuda` etc. if the user requires `~cuda` in configuration)
- Virtual providers that cannot be used, because of a requirement on a virtual

The speed-up these rules seem to give depends on the use case at hand, but if the configuration is updated properly, they are noticeable. 

Since in cases where there is no rule to exclude packages upfront, reuse is active, and this option is activated, it's possible to see some minor slow down, the feature has been added as opt-in, so it's turned off by default.
2025-02-11 08:44:20 +01:00
Wouter Deconinck
1a71bb046e rivet: patch missing header in 3.1.10 (#48977) 2025-02-11 07:40:37 +01:00
Peter Scheibel
dbd6857d32 spack compiler find: detect flang-new and flang in newer LLVM versions (#48914) 2025-02-11 07:34:28 +01:00
renjithravindrankannath
025bc24996 Bump up the version for rocm-6.3.2 release (#48787)
* Bump up the version for rocm-6.3.2 release

* rocm-openmp-extras update and style correction

* Updating mivisionx, omniperf, rccl & rocprofiler-systems

* Updating hipsparselt & rocm-opencl

* rocprofiler-systems on gcc-13 and rvs commit instead of patch

* Updated rocjpeg & rocm-examples for 6.3.2

* ROCPROFSYS_BUILD_DYNINST & DYNINST_BUILD_TBB are required only with gcc-13

---------

Co-authored-by: afzpatel <122491982+afzpatel@users.noreply.github.com>
2025-02-10 21:03:23 -08:00
Piotr Sacharuk
01e16b58a3 lua-sol2: Apply workaround for oneAPI compiler for problem with build (#48920) 2025-02-10 21:51:57 -07:00
Tim Haines
f71e202f24 cbtf-krell: Update Boost dependency (#47133)
* Update Boost
* Add gotcha
* Add patch for build errors
* Allow building with latest Dyninst
* Fix patch url
2025-02-10 13:05:05 -08:00
Stephen Nicholas Swatman
f7edd10c17 acts dependencies: new versions as of 2025/02/10 (#48969)
This commit adds detray v0.88.0 and GeoModel v6.9.0.
2025-02-10 13:27:54 -07:00
Richard Berger
153c0805dd ports-of-call: add v1.6.0, v1.7.0, v1.7.1 (#48870) 2025-02-10 11:55:59 -08:00
Harmen Stoppels
5d8517ef69 import-check: bump (#48968) 2025-02-10 20:48:59 +01:00
Fernando Ayats
f23cae6a86 py-iterative-stats: add 0.1.1 (#48959) 2025-02-10 07:42:20 -08:00
jgraciahlrs
e6e67f8e0a extrae: tighten dependencies on boost for +dyninst (#48938) 2025-02-10 10:43:31 +01:00
Howard Pritchard
e6bef4ca9b OpenMPI: add version 4.1.8 (#48922)
Signed-off-by: Howard Pritchard <howardp@lanl.gov>
2025-02-10 10:00:14 +01:00
Matt Thompson
e3e0bef0de Update GFE packages (#48899) 2025-02-10 09:59:15 +01:00
Buldram
42486d93ec nim: add v2.2.2 (#48929) 2025-02-10 09:58:15 +01:00
Harmen Stoppels
6d608a9664 log.py: remove setenv calls (#48933) 2025-02-10 09:53:36 +01:00
Matt Thompson
04313afc63 mapl: add v2.53.1, v2.54.1 (#48944) 2025-02-10 09:42:35 +01:00
Teague Sterling
f839d2ba56 duckdb: add v1.2.0 (#48902)
Signed-off-by: Teague Sterling <teaguesterling@gmail.com>
2025-02-10 09:37:46 +01:00
Paul R. C. Kent
2b1a8b1913 Quantum ESPRESSO: add v7.4.1 (#48949) 2025-02-10 09:20:21 +01:00
Vanessasaurus
8907003648 flux-sched: add v0.42.1 (#48952)
Co-authored-by: github-actions <github-actions@users.noreply.github.com>
2025-02-10 09:17:56 +01:00
Adam J. Stewart
8afdba4bf7 py-einops: add v0.8.1 (#48954) 2025-02-10 09:13:54 +01:00
Paul R. C. Kent
57cabbfb10 qmcpack: add v4.0.0 (#48921) 2025-02-10 09:02:38 +01:00
Paul
c71efb9040 go: add v1.23.6 (#48955) 2025-02-10 08:37:34 +01:00
Robert Mijakovic
c5dd2d43d2 reframe: add v4.6.4 -> v4.7.2 (#48242) 2025-02-10 08:25:12 +01:00
Adam J. Stewart
34338ef757 Python: add new versions (#48950)
* Python: add new versions

* black
2025-02-09 17:20:19 +01:00
Piotr Sacharuk
c0bdc37226 nwchem: add master (#48919)
* Add possibility to build nwchem from master branch

* add oneapi@2025: patch for @7.2.3

---------

Co-authored-by: eugeneswalker <eugenesunsetwalker@gmail.com>
2025-02-07 10:56:04 -08:00
Sergey Kosukhin
8bad9fb804 serialbox: add version 2.6.2 (#48937) 2025-02-07 10:30:31 -08:00
Harmen Stoppels
2df7cc0087 libgcrypt: fix enforced -O0 (#48940)
Signed-off-by: Shane Nehring <snehring@iastate.edu>
Co-authored-by: Shane Nehring <snehring@iastate.edu>
2025-02-07 19:08:51 +01:00
Piotr Sacharuk
40d40ccc52 Apply workarounds for oneAPI compiler for ascent problem with build (#48918)
* Apply workarounds for oneAPI compiler for ascent problem with build

* Use the way with use patch through the PR address

* stylecheck - missing comma
2025-02-07 06:20:19 -07:00
Harmen Stoppels
afe7d6c39e package_base.py: remove use_cray_compiler_names (#48932) 2025-02-07 12:47:17 +01:00
Rocco Meli
113733d9fb trexio: fix issues with autotools build system (#48923) 2025-02-07 03:42:46 -07:00
Massimiliano Culpo
a8e2da5bb8 Fix regression due to dyninst update (#48935) 2025-02-07 10:46:42 +01:00
Harmen Stoppels
97750189b6 clingo-bootstrap: fix +optimized build (#48931)
* fix regression `apple-clang` vs `%apple-clang`
* use f-strings
* remove --verbose flag from LDFLAGS
2025-02-07 09:46:05 +01:00
Teague Sterling
bcd40835a0 py-maturin: add v1.8.2 and refined dependencies (#48915) 2025-02-07 01:23:33 -07:00
John W. Parent
2c3f2c5733 Windows: Update default config for stage location (#48511)
Current location is within the Spack prefix, which causes builds to
pollute VCS with stage artifacts and generally inflates the Spack
install prefix.

This PR moves it to the user cache location now that we can
consistently support paths with spaces on Windows.
2025-02-06 23:25:11 -08:00
Massimiliano Culpo
302d74394b dyninst: cleanup package (#47637)
* Use more idiomatic construct, shorten recipe
* Remove deprecated versions, and associated patches
* Remove v10.0.0
2025-02-07 08:20:05 +01:00
Vinícius
cf94dc7823 simgrid: add v3.36 (#48909) 2025-02-06 21:03:00 -07:00
Rocco Meli
4411ee3382 dla-future-fortran: add v0.3.0 (#48900) 2025-02-06 18:56:10 -07:00
John W. Parent
f790ce0f72 icu4c: no cxxstd flag option on Windows (#48510)
* ICU4C: Don't reference a spec variant on a platform on which it's not defined

* icu4c: no cxx flag on Windows
2025-02-06 18:55:57 -07:00
Mikael Simberg
64d53037db pika: Add 0.32.0 (#48897) 2025-02-06 18:49:55 -07:00
Chris Marsh
4aef50739b Add new version of r-curl (#48912) 2025-02-06 18:38:09 -07:00
Wouter Deconinck
a6e966f6f2 dcap: depends_on libxcrypt (#48903) 2025-02-06 18:37:51 -07:00
psakievich
1f428c4188 Add a message for CMake incremental build (#48905)
* Add a message for CMake incremental build

Requested message to explain CMake phase is getting skipped.

* [@spackbot] updating style on behalf of psakievich

* Update import

---------

Co-authored-by: psakievich <psakievich@users.noreply.github.com>
2025-02-07 01:32:06 +00:00
Thomas Madlener
731e48b1bd lcio: add v2.22.4 (#48895) 2025-02-06 18:20:34 -07:00
Wouter Deconinck
74ff9ad821 hep stack: build also with cuda and rocm where possible (#48528) 2025-02-06 17:09:15 -07:00
Alberto Invernizzi
16a4eff689 nvpl-blas, nvpl-lapack: add v0.4.0.1, v0.3.0 (#48901) 2025-02-06 15:27:28 -07:00
Alberto Sartori
d0b0d8db50 justbuild: add v1.4.3 (#48898) 2025-02-06 15:21:16 -07:00
AMD Toolchain Support
54f591cce5 amdfftw: fix broken build, adjust flags for performance tuning (#48754)
With CFLAGS, the code path in the amdfftw build system will bypass the logic around AMD_ARCH.

---------

Co-authored-by: vijay kallesh <Vijay-teekinavar.Kallesh@amd.com>
2025-02-06 15:14:44 -07:00
Chris Marsh
8677bb4d43 py-numba: Add version 0.61 (#48837) 2025-02-06 07:54:53 -08:00
SXS Bot
b66b80a96a spectre: add v2025.01.30 (#48803)
Co-authored-by: sxs-bot <sxs-bot@users.noreply.github.com>
2025-02-06 13:49:46 +01:00
Adam J. Stewart
10e21f399c py-shapely: add v2.0.7 (#48810) 2025-02-06 13:45:08 +01:00
Matt Thompson
56892f6140 fms: add 2025.01, 2024.03 (#48812) 2025-02-06 13:44:46 +01:00
George Young
7eddc4b1f8 mummer4: patching to allow building with %gcc@13: (#38292)
Co-authored-by: LMS Bioinformatics <bioinformatics@lms.mrc.ac.uk>
Co-authored-by: Massimiliano Culpo <massimiliano.culpo@gmail.com>
2025-02-06 13:37:42 +01:00
Adam J. Stewart
3c7392bbcc PyTorch: add v2.6.0 (#48794) 2025-02-06 13:32:53 +01:00
ddement
bb0517f4d9 openturbine: add new package (#48683) 2025-02-06 13:32:14 +01:00
Izaak "Zaak" Beekman
c8994ee50f salt: add v0.3.0 (#48877)
* salt: Add v0.3.0 of SALT

This version contains important bug fixes for building and parsing
projects containing Fortran

* salt: Be more explicit about dependency types

 - llvm+clang+flang is needed at build, link and runtime for the
   correct operation of SALT
 - Testing with llvm@master ( llvm > 19.x ) shows that SALT is
   currently incompatible with the latest llvm API so an updated salt
   will be required when LLVM 20 is released
2025-02-06 13:02:08 +01:00
Wouter Deconinck
4b2f5638f2 sherpa: +hepmc3root only when +root (#48827)
* sherpa: +hepmc3root only when +root

* sherpa: fix style
2025-02-06 12:33:27 +01:00
Richard Berger
31312a379f spiner: add v1.6.3 (#48871)
* spiner: update package logic

* singularity-eos: remove spiner cuda_arch propagation

* spiner: add version 1.6.3
2025-02-06 11:47:44 +01:00
Harmen Stoppels
b0d5f272b0 llvm: fix @15 %apple-clang@16 (#48887) 2025-02-06 10:52:36 +01:00
Harmen Stoppels
1c93fef160 spec.py: ensure == is false if true modulo precomputed dag hash (#48889) 2025-02-06 09:55:27 +01:00
Axel Huebl
8bb5f4faf4 enzyme: add v0.0.172 (#48881) 2025-02-06 09:40:14 +01:00
Dom Heinzeller
f76ab5f72f Update py-arch, py-statsmodels (add 0.14.1), py-patsy (add 0.5.4) to be able to use py-cython@3 (#48769)
* Add py-patsy@0.5.4
* Correct py-numpy dependency in py-arch
* Add py-statsmodels@0.14.1 and update dependencies
* Add climbfuji as maintainer for py-patsy
* Add climbfuji as maintainer for py-statsmodels
* Update var/spack/repos/builtin/packages/py-statsmodels/package.py
2025-02-05 16:23:33 -08:00
Richard Berger
49c831edc3 flecsi: new version 2.3.1 (#48867)
* flecsi: add new version 2.3.1, remove develop
* flecsi: remove kokkos and openmp variants moving forward
* flecsi: propagate cuda and rocm settings from kokkos
* Update var/spack/repos/builtin/packages/flecsi/package.py
   Co-authored-by: Davis Herring <herring@lanl.gov>
* flecsi: remove redundant depends_on lines
* flecsi: correct legion dependency
* flecsi: deprecate v2.0.0 and v2.1.0
* flecsi: force +openmp if ^kokkos+openmp

---------

Co-authored-by: Davis Herring <herring@lanl.gov>
2025-02-05 16:18:58 -08:00
afzpatel
c943c8c1d2 hip-tests: new package (#47273)
* hip-tests: add new package
* remove hip-tests from hip recipe
* remove old versions
* fix style
* add missing import
* bump hip-tests to 6.3.1
* fix style
2025-02-05 15:35:04 -08:00
Harmen Stoppels
e0e6f29584 relocate.py: don't warn about symlinks (#48904)
`relocate_links` warns when the target is absolute and not matched by
any prefix from the prefix to prefix map.

This can lead to false positives, cause the prefix to prefix map does
not contain trivial/identity entries whenever a package is installed to
its original location.

Since relocate_links is the odd one out there (we don't warn about
similar issues with rpaths, etc), just remove the warning.
2025-02-05 12:33:44 -07:00
Wouter Deconinck
72bc3bb803 libice: add v1.1.2 (#48861) 2025-02-05 10:35:34 -08:00
Wouter Deconinck
dba8fe2b96 harfbuzz: add v10.2.0 (#48857) 2025-02-05 10:35:18 -08:00
Harmen Stoppels
4487598d60 spec.py: ensure spec.extra_attributes is {} if is null in json (#48896) 2025-02-05 17:55:53 +01:00
Stephen Nicholas Swatman
495537cf56 acts: add v39.0.0 (#48839)
This commit adds version 39.0.0 of the ACTS package which, as far as I
can tell, doesn't require any dependency updates.
2025-02-05 09:39:21 -06:00
George Young
22c3b4099f code-server: update to v4.96.4 (#48828) 2025-02-05 04:38:11 -07:00
japlews
13978d11a0 Scotch: add v7.0.6, add testing option (#48781) 2025-02-05 12:04:00 +01:00
Alec Scott
a22114b20b bash: add autotools dependencies (#48874) 2025-02-05 11:26:43 +01:00
Chris Marsh
c10624390f Fix esmf usage, add new version (#48835) 2025-02-05 11:24:48 +01:00
Felix Thaler
fb3d9de80b nnn: new package (#46174)
Co-authored-by: Bernhard Kaindl <bernhardkaindl7@gmail.com>
2025-02-05 11:23:28 +01:00
Harmen Stoppels
fbb688af07 spec.py: fix hash change due to None vs {} (#48854)
* Fix hash change due to None vs {}

* Enforce null for empty list of external_modules
2025-02-05 09:48:00 +01:00
Chris Marsh
d34b709425 py-elevation: new package (#48836) 2025-02-05 09:46:49 +01:00
rfbgo
cb0b188cf6 pfind: new package (#48685) 2025-02-05 09:31:10 +01:00
Harmen Stoppels
9a2b0aca66 ci: bump import-check (#48883) 2025-02-05 09:17:01 +01:00
Todd Gamblin
89a8ab3233 ci: add codecov token secret to coverage upload job (#48880)
Codecov needs to see the token secret when uploading, so we have to
add this line to the workflow YAML:

```yaml
  with:
    token: ${{ secrets.CODECOV_TOKEN }}
```

Signed-off-by: Todd Gamblin <tgamblin@llnl.gov>
2025-02-05 01:18:02 +00:00
Harmen Stoppels
5d87166c07 gha: standalone import-check (#48873) 2025-02-04 22:18:30 +01:00
Taillefumier Mathieu
15c989b3fe sirius: add v7.6.2 (#48797)
Co-authored-by: Mathieu Taillefumier <mathieu.taillefumier@free.fr>
Co-authored-by: Rocco Meli <r.meli@bluemail.ch>
2025-02-04 13:08:02 -07:00
psakievich
b7f556e4b4 Remove variable from cmake.py (#48824)
* Remove variable from cmake.py

#48775 left a dangling variable that was not caught in CI but by the eyes of @haampie. Restructure variable to local method.

* [@spackbot] updating style on behalf of psakievich

* Update cmake.py

* Update lib/spack/spack/build_systems/cmake.py

* Update lib/spack/spack/build_systems/cmake.py

---------

Co-authored-by: psakievich <psakievich@users.noreply.github.com>
2025-02-04 15:20:15 +01:00
Zack Galbreath
36f32ceda3 Remove ISC stacks environment files (#48851)
Follow-up to #48811
2025-02-04 10:31:40 +01:00
Piotr Sacharuk
01d77ed915 Apply workaround for oneAPI compiler for upcxx problem with a template argument list (#48843)
* Fix upcxx problem with  a template argument list is expected after a name prefixed by the template keyword

* Revert "Fix upcxx problem with  a template argument list is expected after a name prefixed by the template keyword"

This reverts commit faf9b8ce85.

* Apply workaround for oneAPI compiler

* style problem resolved

* use spec.satisfies syntax

---------

Co-authored-by: eugeneswalker <eugenesunsetwalker@gmail.com>
2025-02-04 09:26:44 +01:00
Wouter Deconinck
0049f8332d libsm: add v1.2.5 (#48862) 2025-02-03 23:03:10 -07:00
Wouter Deconinck
39c10c3116 dd4hep: add v1.31 (#48850) 2025-02-03 22:48:17 -07:00
Todd Gamblin
71d1901831 update pyproject.toml for ruff format (#48823)
Add ruff configuration to `pyproject.toml`.

This allows `ruff format` in the Spack repository to format all the files we care about, 
with our line length of 99, the exceptions we already put in place, and excluding things
we don't auto-format, like vendored dependencies.

Right now it'll reformat 175 or so files, but only slightly, in places where `ruff` differs from
`black`. For the most part I like the ruff format decisions better than `black`, but none of
the changes seem too severe.

This does not change `spack style` -- I figure that can come later but this at least will
let people start playing with `ruff`.

---------

Signed-off-by: Todd Gamblin <tgamblin@llnl.gov>
2025-02-03 20:56:05 -08:00
Wouter Deconinck
41e0863b86 fcgi: add v2.4.3, v2.4.4 (#48856) 2025-02-03 21:32:07 -07:00
Taillefumier Mathieu
a75d83f65c netlib-scalapack: Update version (#48667)
* Update scalapack version

Signed-off-by: Mathieu Taillefumier <mathieu.taillefumier@free.fr>

* use url_for_version

Signed-off-by: Mathieu Taillefumier <mathieu.taillefumier@free.fr>

* use spec.satisfies instead of version()

---------

Signed-off-by: Mathieu Taillefumier <mathieu.taillefumier@free.fr>
Co-authored-by: Mathieu Taillefumier <mathieu.taillefumier@free.fr>
2025-02-03 21:31:40 -07:00
Wouter Deconinck
f2f13964fb sherpa: support cxxstd=20 when=@3: (#48829)
* sherpa: support cxxstd=20 when=@3:

* hep: sherpa cxxstd=20
2025-02-03 22:24:35 -06:00
Weiqun Zhang
9b032018d6 amrex: add v25.02 (#48853) 2025-02-03 21:23:08 -07:00
Wouter Deconinck
7d470c05be libdrm: add v2.4.124 (#48860) 2025-02-03 21:03:18 -07:00
Wouter Deconinck
664fe9e9e6 cppgsl: add v4.1.0 (#48864) 2025-02-03 20:53:01 -07:00
Chris Marsh
2745a519e2 Add new package py-metis (#48848) 2025-02-03 20:43:12 -07:00
Wouter Deconinck
4348ee1c75 icu4c: add v75.1, v76.1 (#48858) 2025-02-03 20:42:48 -07:00
Chris Marsh
8e39fb1e54 Add new package func (#48849) 2025-02-03 20:38:12 -07:00
Wouter Deconinck
09458312a3 isa-l: add v2.31.1 (#48859) 2025-02-03 20:37:51 -07:00
Chris Marsh
5fd0693df4 py-geojson: Add new package (#48847)
* Add new package py-geojson
* fix when
2025-02-03 20:37:35 -07:00
snehring
f58684429d Tesseract v5.5.0 (#48866)
* leptonica: adding v1.85.0
  Signed-off-by: Shane Nehring <snehring@iastate.edu>
* tesseract: adding v5.5.0
  Signed-off-by: Shane Nehring <snehring@iastate.edu>

---------

Signed-off-by: Shane Nehring <snehring@iastate.edu>
2025-02-03 16:07:54 -08:00
afzpatel
409611a479 rocm-examples and rocjpeg: new packages (#47695)
* new package: rocm-examples
* add new package rocjpeg and update rocm-examples for 6.3.0
* fix licenses
* add versions 6.3.1
* change homepage and git
* add f-string
2025-02-03 13:11:42 -08:00
afzpatel
dd98cfb839 py-tensorflow: add 2.18.0-rocm-enhanced (#48711)
* py-tensorflow: add 2.18.0-rocm-enhanced

* fix style

* fix style

* fix style

* review changes

* review changes

* remove hipblaslt dependency

* remove ci changes and force ROCm 6.3.1 for newest TF

* remove rocm 6.3.1 dependency

* simplify configure fix
2025-02-03 13:38:25 -07:00
Mosè Giordano
5c91667dab r-dmrcate: add v2.16.0, v3.0.0, v3.2.0 (#48158)
* r-dmrcate: add new versions
* r-dmrcate: require `r@4.3.0` for v2.99.0+
* r-dmrcate: update dependencies
2025-02-03 12:17:47 -08:00
Seth R. Johnson
9efd6f3f11 g4vg: new package (#48844)
* g4vg: new package

* [@spackbot] updating style on behalf of sethrj
2025-02-03 11:01:10 -07:00
Harmen Stoppels
a8f5289801 cdash: avoid build_opener (#48846) 2025-02-03 18:41:40 +01:00
Harmen Stoppels
ac635aa777 packge_base.py: remove _patches_by_hash (#48768) 2025-02-03 16:17:42 +01:00
Rocco Meli
45dcddf9c3 CP2K: use libxc@7 for master/next release (#48808) 2025-02-03 15:59:44 +01:00
Harmen Stoppels
f1660722e7 gcc: deprecate old patch releases (#48761) 2025-02-03 15:27:14 +01:00
Zack Galbreath
04b44d841c gitlab: remove isc stacks (#48811) 2025-02-03 15:26:59 +01:00
Mosè Giordano
7f30502297 ziatest: add new package (#48809) 2025-02-03 14:41:38 +01:00
Rocco Meli
61b1586c51 sirius: patch pugixml (#48841) 2025-02-03 06:33:00 -07:00
pauleonix
8579efcadf cuda: add v12.8 (#48708) 2025-02-03 13:49:30 +01:00
Harmen Stoppels
1c3e2b5425 llvm: deprecate old patch releases (#48762) 2025-02-03 11:17:53 +01:00
Henri Menke
011ef0aaaf berkeleygw: add -o flag to tar extraction (#48816)
when extracting as root user, avoid that tar attempts to change file ownership
2025-02-03 11:08:56 +01:00
Harmen Stoppels
9642f3f49a import-check: enable color output (#48842) 2025-02-03 11:02:21 +01:00
Harmen Stoppels
a6c9b55fad Set version to v1.0.0.dev0 (#48791) 2025-02-03 01:42:32 -08:00
Todd Gamblin
608ed967e1 style: fix not in and is not (#48831)
These are some changes that `ruff check --fix` would make that the current
`spack style` also agrees with.  Make the changes now so that the `ruff`
change is less disruptive.

Signed-off-by: Todd Gamblin <tgamblin@llnl.gov>
2025-02-03 00:49:38 -08:00
Todd Gamblin
742eaa32b7 spack_yaml: use unambiguous variable name (#48832) 2025-02-03 09:07:39 +01:00
Harmen Stoppels
763b35a2e0 import-check: improve how problematic imports are displayed (#48825)
The import-check action now presents problematic import statements
introduced by the PR better.

The idea is roughly:

* Let (V₁, E₁) be the graph of modules as vertices and import statements
  as edges before the change
* Let (V₂, E₂) be the graph after the code change, which is typically a small
  perturbation of (V₁, E₁).
* X₁ = FAS(V₁, E₁) is the feedback arc set before (a minimal set of edges to
  delete to make it acyclic)
* X₂ = FAS(V₂, E₂ ∖ X₁) is the feedback arc set after deletion of the minimal
  set of edges that made the old graph acyclic.
* X₃ = FAS(V₂, E₂) is the feedback arc set after

Previously I displayed X₁ and X₃ and users had to diff themselves.

Now, I'm showing X₂, which is a small set, typically directly related to
code changes.

However, it can be that a small code change adding say 2 problematic imports
creates a completely different solution X₃ that only requires deletion of just 1
different import. In that case the user is informed that they can potentially do
less work.

So for PR #48784 the output is now:

> The overall number of problematic import statements increased by 1 from 31 to 32.
> This is likely a direct consequence of the following import statements:
> 
> ```
> spack/config imports: spack.spec, spack.util.path, spack.util.remote_file_cache
> ```
> 
> However, instead of removing 3 import statements, it is sufficient to remove only 1
> import statement from the following list:
> 
> ```
> spack/concretize imports: spack.bootstrap, spack.solver.asp
> spack/environment imports: spack.bootstrap, spack.environment
> spack/fetch_strategy imports: spack.version.git_ref_lookup
> spack/install_test imports: spack.build_environment, spack.package_base
> spack/modules imports: spack.modules
> spack/platforms imports: spack.config
> spack/relocate imports: spack.bootstrap
> spack/repo imports: spack.package_base, spack.patch, spack.tag
> spack/spec imports: spack.binary_distribution, spack.compiler, spack.compilers, spack.concretize, spack.environment, spack.hash_types, spack.provider_index, spack.repo, spack.spec_parser, spack.store, spack.traverse, spack.variant, spack.version.git_ref_lookup
> spack/subprocess_context imports: spack.environment
> spack/util/gpg imports: spack.bootstrap
> spack/util/package_hash imports: spack.package_base
> spack/util/path imports: spack.config, spack.environment
> spack/util/remote_file_cache imports: spack.util.web
> ```

from which the user can figure out that
`spack/util/remote_file_cache imports: spack.util.web` is the "bottleneck" now.
2025-02-02 20:56:38 -08:00
Wouter Deconinck
12280f864c embree: fix tests by building tutorial's embree_viewer for tests (#48392) 2025-02-02 20:57:39 -06:00
Thomas Bouvier
253ba05732 nanotron: add new package (#48582)
* nanotron: add new package

Also, update some dependencies and add missing ones.

* Add variant +examples needed to execute example scripts

* fix: add missing branch attribute

* Remove master version

* fix: use Github hash
2025-02-02 14:17:26 -07:00
Harmen Stoppels
195b869e1c gcc: remove --with-ld=ld-classic (#48826) 2025-02-01 22:22:53 +01:00
Wouter Deconinck
393961ffd6 vtk-m: CMAKE_CXX_COMPILER is not a BOOL (#48813) 2025-02-01 20:10:10 +01:00
Till Ehrengruber
392a58e9be oci/opener.py: respect system proxy settings (#48783) 2025-02-01 09:26:55 +01:00
Rocco Meli
0e8e97a811 CP2K: add 2025.1 version and DFTD4 support (#48489)
* cp2k: add dftd4 variant

* better conflict and make support

* typo

* Update var/spack/repos/builtin/packages/cp2k/package.py

* Update var/spack/repos/builtin/packages/cp2k/package.py
2025-02-01 00:58:46 -07:00
danielsjensen1
43a0cbe7a2 py-sphinx-rtd-theme: add v2.0.0, v3.0.0 (#48756)
* Add versions 2 and 3 of py-sphinx-rtd-theme.
   Allow for versions of py-sphinx greater than 6.
   Fix the Python version for older versions that depend on distutils.
   Get the py-docutils dependency from the py-sphinx recipe.
* Depend purely on the py-docutils dependency in py-sphinx.
* More refined dependency versioning.
* Fixed versioning for py-sphinx and py-docutils.
2025-01-31 22:46:44 -07:00
Greg Becker
bb35a98079 env create: create copies of relative include files in envs created from manifest (#48689)
Currently, environments created from manifest files with relative includes result in broken
references to config files.

This PR modifies `spack env create` to create local copies in the new environment of any local
config files from relative paths in the environment manifest passed as an init file.

This PR does not change the behavior if the include is an absolute path or if the include is from
a relative path outside the environment directory, but it does warn about missing relative includes if
they are inside the environment directory.

Includes regression test and short blurb in docs.
2025-02-01 01:41:18 +00:00
Richard Berger
fa7e0e8230 kokkos-nvcc-wrapper: add version 4.5.00 and 4.5.01 (#48802) 2025-01-31 16:47:39 -07:00
Dominic Hofer
2c128751f5 Remove patch on main (#48798)
Patch got merged: https://github.com/natefoo/slurm-drmaa/pull/62
2025-01-31 12:51:34 -07:00
wspear
fb0493a366 Added salt variant to tau (#48782)
* Added salt variant to tau

* Update package.py

* [@spackbot] updating style on behalf of wspear

---------

Co-authored-by: wspear <wspear@users.noreply.github.com>
2025-01-31 13:44:10 -06:00
Brian Spilner
6d1b6e7087 add cdo@2.5.0 (#48801) 2025-01-31 12:05:42 -07:00
psakievich
759518182c Bug Fix: Better incremental check for CMake (#48775)
* Bug Fix: Better incremental check for CMake

* Fix syntax error

* Ensure match of config artifact with generator
2025-01-31 08:48:41 -06:00
Rocco Meli
7ebabfcf0e libsmeagol (#48776)
* libsmeagol

* add support for intel and add conflicts

* cp2k
2025-01-31 12:11:13 +01:00
Satish Balay
6203ae31d2 petsc, py-petsc4py: add v3.22.3 (#48785) 2025-01-31 02:11:16 -07:00
Harmen Stoppels
6b13017ded Remove unused values (#48795)
Signed-off-by: Todd Gamblin <tgamblin@llnl.gov>
Co-authored-by: Todd Gamblin <tgamblin@llnl.gov>
2025-01-31 08:21:44 +01:00
Harmen Stoppels
2c51b5853f spack.package: re-export EnvironmentModifications / Prefix (#48792) 2025-01-31 08:20:15 +01:00
Harmen Stoppels
d0cbd056a8 spack.package: wrap llnl.util.tty (#48793)
avoid import of llnl.util.tty in packages
2025-01-31 08:17:29 +01:00
Adam J. Stewart
e1b579a8b4 py-sphinx: mark Python compatibility (#48796) 2025-01-30 11:27:57 -08:00
Harmen Stoppels
b02dcf697d Move from python2 compliant IOError and EnvironmentError to python3-only OSError (#48764)
* IOError -> OSError

* also do EnvironmentError
2025-01-30 09:32:57 -08:00
Satish Balay
6e046b04c7 hipblaslt: update cmake dependency (#48637)
* hipblaslt: update cmake dependency

1 error found in build log:
  >> 3    CMake Error at CMakeLists.txt:24 (cmake_minimum_required):
     4      CMake 3.25.2 or higher is required.  You are running version 3.22.1
     5
     6
     7    -- Configuring incomplete, errors occurred!

See build log for details:
  /scratch/svcpetsc/spack-rocm/spack-stage/spack-stage-hipblaslt-6.3.0-pabb7t4rheqkz74lfzbsnqi6vnpiqwlq/spack-build-out.txt

* Update var/spack/repos/builtin/packages/hipblaslt/package.py

Co-authored-by: afzpatel <122491982+afzpatel@users.noreply.github.com>

---------

Co-authored-by: afzpatel <122491982+afzpatel@users.noreply.github.com>
2025-01-30 09:20:34 -08:00
Rocco Meli
d196795437 libxc: add CMake builder (#48772)
* libsmeagol

* libxc cmake

* cmake support

* revert changes

* make spackbot happy

* fix

* Update package.py
2025-01-30 18:13:07 +01:00
Chris Marsh
0d444fb4e7 Add py-zarr 3, which includes a new required package py-donfig, and a bug fix to the patch range with numcodecs (#48786) 2025-01-30 06:55:15 -08:00
Todd Gamblin
467e631260 abinit: pass flag correctly (#48788) 2025-01-30 11:44:00 +01:00
Harmen Stoppels
f21de698f7 builtin: remove redundant imports (#48765)
* builtin: remove redundant llnl.util.filesystem import
* remove redundant import spack.version
* unsorted fixes
* more spack.version
2025-01-30 09:18:47 +01:00
John W. Parent
59532986be CMake: add v3.31.5, v3.30.7 (#48759) 2025-01-29 19:03:50 -07:00
Alec Scott
36fd547b40 smee-client: add v2.0.4 (#48384) 2025-01-29 16:22:04 -08:00
wspear
b5f9dea6d0 Create SALT package.py (#48758)
* Create SALT package.py

Added a package for the SALT Source AnaLysis Toolkit
@zbeekman

* [@spackbot] updating style on behalf of wspear

* Update package.py

Line wrap

---------

Co-authored-by: wspear <wspear@users.noreply.github.com>
2025-01-29 15:47:48 -06:00
Eric Berquist
5904834295 binutils: conflict on configuration with build issues (#42949) 2025-01-29 22:38:44 +01:00
Tamara Dahlgren
2da8a1d1e3 Docs/bugfix: correct return for Adding flags to configure (#48434) 2025-01-29 13:04:22 -08:00
Juan Miguel Carceller
d50eba40d9 fmt: simplify +pic (#48766)
Co-authored-by: Harmen Stoppels <harmenstoppels@gmail.com>
2025-01-29 14:02:40 -07:00
Jonathon Anderson
8d3a733b77 hpctoolkit: Add +docs variant and manpages (#48566)
* py-mdit-py-plugins: Add new versions 0.3.5, 0.4.2
  Signed-off-by: Jonathon Anderson <anderson.jonathonm@gmail.com>
* py-myst-parser: Add new versions 0.19.0 to 4.0.0
  Signed-off-by: Jonathon Anderson <anderson.jonathonm@gmail.com>
* hpctoolkit: Add +docs variant and manpages
   This commit unconditionally enables manpages for the HPCToolkit tools.
   The new `+docs` variant enables additional documentation, specifically
   the user's manual. Both require new build-time dependencies.
  Signed-off-by: Jonathon Anderson <anderson.jonathonm@gmail.com>

---------

Signed-off-by: Jonathon Anderson <anderson.jonathonm@gmail.com>
2025-01-29 09:26:54 -08:00
Richard Berger
dfa86dce08 petsc: only conflict with kokkos@4.5: if it is enabled (#48698) 2025-01-29 10:07:58 -07:00
Massimiliano Culpo
3d82e5c573 Remove pipelines and images based on ppc64le (#48767) 2025-01-29 16:36:25 +01:00
Harmen Stoppels
a77f903f4d py-cmake: remove. remove deprecated cmake versions (#48763) 2025-01-29 15:06:32 +01:00
Harmen Stoppels
92260b179d package api: drop wildcard re-export (#48760)
* package api: drop wildcard re-export

To ensure package repos are forward/backward compatibility with Spack,
we should explicitly export all symbols we want to expose in the public
package API, and drop `from spack.something import *` because
removal/addition to the public API will go unnoticed.

Also `llnl.util.filesystem` has some methods that shouldn't be exposed
in the package API, so better to enumerate a subset explicitly.

* remove flatten_dependencies / install_dependency_symlinks
2025-01-29 15:00:39 +01:00
Massimiliano Culpo
196c912b8a Deprecate frontend/backend os/target (#47756) 2025-01-29 13:22:51 +01:00
G-Ragghianti
0f54995e53 MAGMA: add v2.9.0 (#48750) 2025-01-29 00:17:37 -07:00
Filippo Spiga
9d1332f1a1 ucx: adding 1.18.0 (#48742)
* Adding UCX 1.18.0
* Verified and correct hash.
2025-01-28 09:26:19 -07:00
Massimiliano Culpo
40a1da4a73 spec.py: fix ArchSpec.intersects (#48741)
fixes a bug where `x86_64:` and `ppc64le:` intersected, and x86_64: and :haswell did not.
2025-01-28 16:46:09 +01:00
Satish Balay
82e091e2c2 petsc+rocm: add dependency on hipblas-common (#48644) 2025-01-28 09:45:12 -06:00
Thomas-Ulrich
c86112b0e8 update hypre version and add new memalign for petsc (#47831) 2025-01-28 09:42:42 -06:00
jmuddnv
bb25c04845 Changes for NVIDIA HPC SDK 25.1 (#48696) 2025-01-28 07:05:33 -07:00
Buldram
d69d26d9ce toybox: add v0.8.12 (#48657) 2025-01-28 14:47:22 +01:00
snehring
06d660b9ba autodock-vina: adding version 1.2.6 (#48684)
Signed-off-by: Shane Nehring <snehring@iastate.edu>
2025-01-28 14:28:28 +01:00
snehring
40b3196412 py-ipyrad: adding version 0.9.102 (#48686)
Signed-off-by: Shane Nehring <snehring@iastate.edu>
2025-01-28 14:27:16 +01:00
Juan Miguel Carceller
7e893da4a6 thepeg: extend the rivet@:3 dependency up to version 2.3 (#48691)
Co-authored-by: jmcarcell <jmcarcell@users.noreply.github.com>
2025-01-28 14:25:02 +01:00
David Schneller
13aa8b6867 easi: add v1.5.1; relax yaml-cpp and lua requirements (#48675) 2025-01-28 14:23:57 +01:00
Adam J. Stewart
b0afb619de py-geemap: add new package (#48602) 2025-01-28 14:12:25 +01:00
Adam J. Stewart
7a82c703c7 JAX: add v0.4.32+ (#46346)
* JAX: add v0.4.34

* Disable search for clang

* Update CUDA flags

* Add py-jax 0.4.33, comment out until py-jaxlib 0.4.33 is also released

* Fix GCC build

* Try TF_NVCC_CLANG

* py-jax: add v0.4.34

* jax no longer has separate tags for jaxlib

* Install compiled wheel

* Join path before glob

* Wheel is in spack stage, not tmp path

* Add 0.4.35

* Add newer versions

* Build system has been refactored yet again

* Drop clang

* Fix build with source tarball, rocm support

* Support GCC

* Remove clang-specific compiler flags

* enable_cuda flag was removed

* Fix logic

* py-jax: add v0.4.38

* Add patch to fix GCC support

* Patch no longer needed

* Skip patching, directly pass flags

* New flags

* Remove unused import

* Patch changed

* Use older version of patch

* Newer patch

* Add CUDA symlink

* Symlink more directories

* Recursive symlink

* Import function

* Recursive search

* Undo cuda changes

* Add v0.5.0

* I quit
2025-01-28 13:37:50 +01:00
G-Ragghianti
0d3667175a papi: fix error finding gmake during post-install testing (#48592) 2025-01-28 12:51:10 +01:00
Wouter Deconinck
a754341f6c hep stack: additional event generator packages (#48565)
* hep stack: additional event generator packages

* hep: adidtional packages

* hep: collier doesn't have +pic +shared

* py-awkward-cpp: fix scikit-build-core range of applicability

* hep: disable agile

* hep: disable garfieldpp and genie

* py-wxpython: depends_on pkgconfig even if using external wxwidgets

* hep: disable professor
2025-01-28 05:38:58 -06:00
Thomas Bouvier
a50c45f00c py-flash-attn: add missing triton dependency (#48645) 2025-01-28 11:43:27 +01:00
Sreenivasa Murthy Kolam
87e65e5377 Bump up the version for rocm-6.3.1 release (#48440)
This PR updates the versions for the rocm recipes for rocm-6.3.1 release.
2025-01-28 01:53:55 -08:00
Etienne Ndamlabin
50fe96aaf6 damaris: add v1.12.0, update maintainers (#48674)
Co-authored-by: Etienne Ndamlabin <jean-etienne.ndamlabin-mboula@inria.fr>
2025-01-28 10:13:21 +01:00
Rocco Meli
56495a8cd8 dftd4, mctc-lib: enable cmake builds and add multicharge package (#48594)
* enable cmake builds

* [@spackbot] updating style on behalf of RMeli

* Update var/spack/repos/builtin/packages/dftd4/package.py

Co-authored-by: Sebastian Ehlert <28669218+awvwgk@users.noreply.github.com>

* Update var/spack/repos/builtin/packages/mctc-lib/package.py

* include

* fix

* use sha256

* update

---------

Co-authored-by: RMeli <RMeli@users.noreply.github.com>
Co-authored-by: Sebastian Ehlert <28669218+awvwgk@users.noreply.github.com>
2025-01-28 09:53:22 +01:00
Harmen Stoppels
c054cb818d import os.path -> os (#48709) 2025-01-28 09:45:43 +01:00
Benjamin Meyers
bc28ec35d1 py-ogb: update version (#48740) 2025-01-27 17:10:53 -07:00
Massimiliano Culpo
e47a6059a7 Improve definition of a few placeholder packages (#48730)
* Improve definition of a few placeholder packages
   These packages are placeholders for vendor provided software,
   that is not buildable, and should be declared as external.
* ibm-java: remove package, as asked by maintainer
2025-01-27 15:34:34 -08:00
Matt Thompson
0d170b9ef3 mapl: fix too strict oneapi conflict (#48743)
* mapl: fix too strict oneapi conflict
* Use older style
* Add diag-disable flag
* Updates from Dom
2025-01-27 15:14:38 -08:00
Garth N. Wells
5174cb9180 Add nanobind 2.4.0 (#48721) 2025-01-27 15:07:11 -08:00
Dom Heinzeller
22ba366e85 Fix creating a bootstrap mirrors (#48252)
Regressed in #47126 

Spack was not interpreting mirrors using relative path with respect to the
metadata directory.

---------

Co-authored-by: Massimiliano Culpo <massimiliano.culpo@gmail.com>
2025-01-27 22:37:29 +00:00
Massimiliano Culpo
13558269b5 Fix a few minor issues in tests (#48735)
* test_no_matching_compiler_specs: does not need mock_low_high_config,
  since mutable_config is already used at class level
* bindist.py: setup a configuration that doesn't super-impose builtin.mock
  over builtin
* builder.py: use a mock configuration for the tests
2025-01-27 23:36:27 +01:00
Stephen Nicholas Swatman
615b7a6ddb geomodel: Add version 6.8.0 (#48727)
This commit adds version 6.8.0 of GeoModel. As far as I can tell from
the change notes, there are no changes required to the build
configuration or dependencies.
2025-01-27 14:09:12 -08:00
Dennis Klein
0415b21d3d fairmq: add v1.9.1 (#48724) 2025-01-27 14:08:32 -08:00
Matthieu Dorier
053c9d2846 librdkafka: added version 2.6.1 and 2.8.0 (#48725) 2025-01-27 14:06:58 -08:00
Harmen Stoppels
1e763629f6 dealii: add vtk backward compat bound (#48744) 2025-01-27 15:00:32 -07:00
Harmen Stoppels
7568687f1e vtk: fix incorrect detection of -fvisibility (#48737) 2025-01-27 22:12:40 +01:00
Vicente Bolea
3b81c0e6b7 zfp: add smoke test (#48598) 2025-01-27 12:33:11 -08:00
Joe
c764400338 Allowing environment variables to be set in a spack.yaml (#47587)
This adds a new configuration section called `env_vars:` that can be set in an environment.

It looks very similar to the existing `environment:` section that can be added to `modules.yaml`,
but it is global for an entire spack environment. It's called `env_vars:` to deconflate it with spack
environments (the term was too overloaded).

The syntax looks like this:

```yaml
spack:
  specs:
    - cmake%gcc
  env_vars:
    set:
      ENVAR_SET_IN_ENV_LOAD: "True"
```

Any of our standard environment modifications can be added to the `env_vars` section, e.g.
`prepend_path:`, `unset:`, `append_path:`, etc.  Operations in `env_vars:` are performed
on `spack env activate` and undone on `spack env deactivate`.
2025-01-27 12:20:22 -08:00
Mikael Simberg
4e8a6eec1a fmt: Add 11.1.3 (#48726) 2025-01-27 13:03:43 -07:00
Alec Scott
ebc9f03dda Go build system: reduce resulting installation sizes (#47943)
* Reduce the size of outputted go built binaries
* Remove unused import from go package
* go: remove comment from setup dependents build env
* Add back missing imports after rebase
2025-01-27 11:32:56 -08:00
Alec Scott
8ac0bd2825 GoPackage: respect -j concurrency (#48421) 2025-01-27 12:58:29 -05:00
Tara Drwenski
cc9e0137df Initialize deque with path string (#48734) 2025-01-27 17:42:29 +01:00
Adam J. Stewart
b8e448afa0 py-timm: add v1.0.14 (#48648) 2025-01-27 11:16:37 -05:00
Adam J. Stewart
209d670bf3 py-scikit-image: add v0.25.1 (#48728) 2025-01-27 11:13:41 -05:00
Harmen Stoppels
c6202842ed Improve error handling in urlopen / socket read (#48707)
* Backward compat with Python 3.9 for socket.timeout
* Forward compat with Python [unknown] as HTTPResponse.geturl is deprecated
* Catch timeout etc from .read()
* Some minor simplifications: json.load(...) takes file object in binary mode.
* Fix CDash code which does error handling wrong: non-2XX responses raise.
2025-01-27 16:59:05 +01:00
Taillefumier Mathieu
b2a75db030 Force rocm dependency on hipfft with +rocm is given (#48211)
Make sure that hipfft+rocm is explicit when +rocm is true.

Co-authored-by: Rocco Meli <r.meli@bluemail.ch>
2025-01-27 11:33:31 +01:00
Greg Becker
0ec00a9c9a rewiring.py: eliminate code duplication from bindist (#48723) 2025-01-27 10:09:04 +01:00
psakievich
5e3020ad02 filesystem.py: fix recursive_mtime_greater_than (#48718) 2025-01-26 08:29:29 +01:00
Dave Keeshan
a0d0e6321f verible: v0.0.3929 (#48701) 2025-01-25 13:32:21 -07:00
Dave Keeshan
0afac0beaa yosys: add v0.49 (#48700) 2025-01-24 12:36:19 -08:00
Thomas-Ulrich
6155be8548 New Package: PUMGen (#48705)
* add pumgen package
* remove netcdf variant
* remove scorec variant, move zoltan dep
* fix license
2025-01-24 12:32:21 -08:00
Matt Thompson
611cb98b02 mapl: add v2.53.0 (#48712) 2025-01-24 13:09:14 -07:00
Mark W. Krentel
ea5742853f hpcviewer: add version 2025.01 (#48670) 2025-01-24 10:52:18 -08:00
Harmen Stoppels
25a3e8ba59 Remove unused Tokenizer.full_match (#48650) 2025-01-24 15:53:42 +01:00
Mikael Simberg
7fbb3df6b0 Revert "pika: Add conflict between HIP and GCC (libstdc++) >= 13 (#46291)" (#48693)
The conflict is too strict and prevents usable combinations from being
concretized. Some packages depend on pika, but do not include pika
headers in HIP device code files, and can thus be compiled even with the
bad combination of HIP and GCC versions.
2025-01-24 07:35:11 -07:00
AMD Toolchain Support
a728db95de Allow scipy to be built with AOCC again (#48505)
Co-authored-by: Phil Tooley <phil.tooley@amd.com>
2025-01-24 11:13:47 +01:00
Juan Miguel Carceller
7bc4069b9e py-awkward: add dependency for py-importlib-metadata (#47027)
* py-awkward: add dependency on py-importlib-metadata and py-fsspec
* Implement suggested constraint and dependency type changes

---------

Co-authored-by: jmcarcell <jmcarcell@users.noreply.github.com>
2025-01-23 16:22:28 -08:00
Dom Heinzeller
51fc195d14 Fix var/spack/repos/builtin/packages/ectrans/package.py: instead of declaring a conflict with Intel LLVM compilers, apply patch from upstream (#48687) 2025-01-23 16:18:48 -08:00
Harmen Stoppels
27a0593104 openmpi: do not pass --with-wrapper-ldflags (#48673)
On macOS you cannot unconditionally pass `-rpath`, it can conflict with
`-r`.

mpicc is not the place to inject rpaths to compiler runtime
libraries. That's up to the compiler's config files (spec files in gcc,
config files in llvm).

Also remove some patches that are redundant in newer versions of
openmpi.
2025-01-23 15:53:49 +01:00
Juan Miguel Carceller
f95e27a159 SIPPackage: add gmake as a build dependency to be able to build py-pyqt5 (#48660) 2025-01-23 15:51:59 +01:00
Valentin Volkl
effe433c96 gaudi: set GAUDI_PLUGIN_PATH for runtime on macos (#48039)
* set GAUDI_PLUGIN_PATH

* [@spackbot] updating style on behalf of vvolkl

---------

Co-authored-by: vvolkl <vvolkl@users.noreply.github.com>
2025-01-23 07:55:21 -06:00
Juan Miguel Carceller
21988fbb18 pandoramonitoring: add patch for compiling with C++20 (#48659)
* pandoramonitoring: add patch for compiling with C++20

* Fix patch for PandoraMonitoring

---------

Co-authored-by: jmcarcell <jmcarcell@users.noreply.github.com>
2025-01-23 06:25:26 -06:00
Massimiliano Culpo
2db654bf5a Define the DB index file name in a single place (#48681) 2025-01-23 12:17:34 +01:00
Harmen Stoppels
9992b563db Improve spack.build_systems typing (#48590) 2025-01-23 12:15:43 +01:00
Harmen Stoppels
daba1a805e build_environment.py: clear CONFIG_SITE for configure scripts (#48690)
Should be sufficient to set CONFIG_SITE to /dev/null before running configure to 
prevent any config site file to be loaded, which currently causes non-determinism in builds.

Setting the variable CONFIG_SITE prevents configure files to check $prefix/share/config.site, 
$prefix/etc/config.site, $ac_default_prefix/share/config.site, $ac_default_prefix/etc/config.site 
so we don't have to patch a block of code.
2025-01-23 11:45:52 +01:00
Wouter Deconinck
832bf95aa4 fmt: add v11.1.{1,2}; spdlog: add v1.15.0 (#48402)
* fmt: add v11.1.1

* spdlog: add v1.15.0

* spdlog: terminate string

* fmt: add v11.1.2

* spdlog: apply fmt-11.1 support patch up to 1.15.0

* spdlog: add prereq patch to ensure intended patch applies cleanly

* spdlog: fix patch checksum
2025-01-23 09:34:20 +01:00
Wouter Deconinck
81e6dcd95c gaudi: add v39.2; CUDA support (#48557)
* gaudi: add v39.2; CUDA support
* gaudi: CUDAPackage -> CudaPackage
2025-01-23 08:41:38 +01:00
Tara Drwenski
518572e710 Use gcc toolchain when using hip and gcc host compiler (#48632) 2025-01-22 23:37:24 -08:00
Sinan
6f4ac31a67 alps: add new package (#48183) 2025-01-22 14:57:19 -07:00
Victor A. P. Magri
e291daaa17 Add OpenMP dependency to Kokkos and KokkosKernels (#48455)
* Add OpenMP dependency to Kokkos and KokkosKernels

* Add Chris' suggestions
2025-01-22 12:53:41 -07:00
Seth R. Johnson
58f1e791a0 Celeritas: new version 0.5.1 (#48678)
* Celeritas: add version 0.5

* Fix style

* Un-deprecate non-awful versions
2025-01-22 11:03:48 -07:00
jnhealy2
aba0a740c2 Address quoting issue impacting dev_paths containing @ symbols (#48555)
* Address quoting issue that casuses dev_paths containing @ symbols to parse as versions

* Fix additional location were dev_path was imporperly constructed

The dev_path must be quoted to avoid parsing issues when
paths contain '@' symbols. Also add tests to catch
regression of this behavior

* Format to fix line length

* fix failing tests

* Fix whitespace error

* Add binary_compatibility fixture to test

* Change string formatting to avoid multiline f string

* Update lib/spack/spack/test/concretization/core.py

* Add tmate debug session

* Revert "Add tmate debug session"

This reverts commit 24e2f77e3c.

* Move test and refactor to use env methods

* Update lib/spack/spack/test/cmd/develop.py

---------

Co-authored-by: psakievich <psakiev@sandia.gov>
2025-01-22 18:03:13 +01:00
Harmen Stoppels
0fe8e763c3 bootstrap: do not show disabled sources as errors if enabled sources fail (#48676) 2025-01-22 17:02:23 +01:00
Harmen Stoppels
0e2d261b7e bootstrap/status.py: remove make (#48677) 2025-01-22 17:00:25 +01:00
Matthieu Dorier
85cb234861 pmdk: add cmake dependency back (#48664) 2025-01-22 14:44:04 +01:00
Harmen Stoppels
87a83db623 autotools.py: set lt_cv_apple_cc_single_mod=yes (#48671)
Since macOS 15 `ld -single_module` warns with a deprecation message,
which makes configure scripts believe the flag is unsupported. That
in turn triggers a code path where `archive_cmds` is set to

```
$CC -r -keep_private_externs -nostdlib ... -dynamiclib
```

instead of just

```
$CC -dynamiclib ...
```

This code path was meant to trigger only on ancient macOS <= 14.4 where
libtool had to add `-single_module`, which is the default since macos
14.4, and is now apparently deprecated because the flag is a no-op for
more than 15 years.

The wrong `archive_cmds` causes actual problems combined with a bug in
OpenMPI's compiler wrapper (`CC=mpicc`), which appends `-rpath` flags,
which cause an error when combined with the `-r` flag added by the
autotools.

Spack's compiler wrapper doesn't do this, but it's likely there are
other compiler wrappers out there that are not aware that `-r` and
`-rpath` cannot be combined.

The fix is to change defaults: `lt_cv_apple_cc_single_mod=yes`.
2025-01-22 11:29:50 +01:00
Taillefumier Mathieu
e1e17786c5 sirius: libxc 7 forward compat (#48663) 2025-01-22 11:27:19 +01:00
eugeneswalker
68af5cc4c0 e4s ci stacks: add libceed (#48668) 2025-01-21 14:13:55 -08:00
Harmen Stoppels
70df460fa7 PackageBase.detect_dev_src_change: speed up (#48618) 2025-01-21 16:48:37 +01:00
Harmen Stoppels
31a1b2fd6c relocate.py, binary_distribution.py: cleanup (#48651) 2025-01-21 15:45:08 +01:00
moloney
f8fd51e12f BF+ENH: Add wxwidgets 3.2.6 and py-wxpython 4.2.2, missing pkgconfig dep (#48597)
* BF+ENH: Add wxwidgets 3.2.6 and py-wxpython 4.2.2

Improves compat with newer Python (>3.9) and numpy.

Fix error during configure step (even on at least some older
versions) by including 'pkgconfig' as a build dep so gtk+ is found.

* BF: Make wxpython use spack built wxwidgets instead of rebuilding

* Update var/spack/repos/builtin/packages/py-wxpython/package.py

Avoid using too new version of py-setuptools as license file format is currently not compatible.

Co-authored-by: Wouter Deconinck <wdconinc@gmail.com>

---------

Co-authored-by: Wouter Deconinck <wdconinc@gmail.com>
2025-01-20 21:01:47 -06:00
Mirko Rahn
12784594aa gpi-space: add v24.12 (#48361) 2025-01-20 11:47:56 -07:00
Massimiliano Culpo
e0eb0aba37 netlib-lapack: add v3.12.1 (#48318)
Co-authored-by: Wouter Deconinck <wdconinc@gmail.com>
2025-01-20 18:23:54 +01:00
Stephen Nicholas Swatman
f47bf5f6b8 indicators: new package (#47786)
* indicators: new package

Indicators is a new package which aims to add easy-to-use progress bars
to modern C++.

* Update header

* Update dependencies
2025-01-20 09:00:37 -06:00
Seth R. Johnson
9296527775 npm, node-js, typescript: add external find (#48587)
* npm: add external find

* node-js: add external find

* Add external for typescript

* Match full executable string

* Fix style
2025-01-20 07:26:01 -06:00
Wouter Deconinck
08c53fa405 pythia8: correct with_or_without prefix for +openmpi (#48131)
* pythia8: correct with_or_without prefix for +openmpi

* pythia8: fix style

* pythia8: fix style
2025-01-20 06:50:29 -06:00
Harmen Stoppels
0c6f0c090d openldap: fix build (#48646) 2025-01-20 13:16:52 +01:00
Nathan Hanford
c623448f81 add affinity package (#48589) 2025-01-20 04:44:25 -07:00
Wouter Deconinck
df71341972 py-mplhep: add v0.3.55 (#48338) 2025-01-20 10:26:09 +01:00
Wouter Deconinck
75862c456d lhapdf: add v6.5.5 (#48336) 2025-01-20 10:25:38 +01:00
dmagdavector
e680a0c153 libslirp: add v4.8.0 (#48561) 2025-01-20 10:23:47 +01:00
Wouter Deconinck
9ad36080ca r: add v4.4.2 (#48329)
* r: add v4.4.2

* r-rcpp: add v1.0.13-1 spot release; conflict 1.0.13 with r@4.4.2
2025-01-20 10:23:23 +01:00
Harmen Stoppels
ecd14f0ad9 archive.py: fix include_parent_directories=True with path_to_name (#48570) 2025-01-20 10:21:32 +01:00
Rocco Meli
c44edf1e8d gnina: add v1.3 (#47711)
* gnina: add v1.3

* Update var/spack/repos/builtin/packages/gnina/package.py

Co-authored-by: Mikael Simberg <mikael.simberg@iki.fi>

* Update var/spack/repos/builtin/packages/gnina/package.py

Co-authored-by: Mikael Simberg <mikael.simberg@iki.fi>

* Update var/spack/repos/builtin/packages/gnina/package.py

Co-authored-by: Mikael Simberg <mikael.simberg@iki.fi>

* use github patch

* update

---------

Co-authored-by: Mikael Simberg <mikael.simberg@iki.fi>
2025-01-20 10:19:49 +01:00
Paul R. C. Kent
1eacdca5aa py-pyscf: add v2.8.0 (#48571) 2025-01-20 10:15:41 +01:00
Keita Iwabuchi
4a8f5efb38 Metall: add v0.29 and v0.30 (#48564)
Co-authored-by: Keita Iwabuchi <iwabuchi1@lln.gov>
2025-01-20 10:14:42 +01:00
Mickael PHILIT
2e753571bd cgns: add v4.5.0 (#48490) 2025-01-20 10:09:45 +01:00
Thomas Bouvier
da16336550 nvtx: fix missing import (#48580) 2025-01-20 10:08:47 +01:00
Alberto Sartori
1818e70e74 justbuild: add version 1.4.2 (#48581) 2025-01-20 10:07:55 +01:00
Chang Liu
1dde785e9a fusion-io: new package (#47699) 2025-01-20 10:06:13 +01:00
Alberto Invernizzi
a7af32c23b py-virtualenvwrapper: add v6.0.0, v6.1.0, v6.1.1 (#47785) 2025-01-20 10:04:40 +01:00
Simon Frasch
6c92ad439b spfft: add v1.1.1 (#48643) 2025-01-20 10:03:50 +01:00
snehring
93f555eb14 dorado: fixing typo on version restriction for hdf5 (#48591)
Signed-off-by: Shane Nehring <snehring@iastate.edu>
2025-01-20 10:01:29 +01:00
Vanessasaurus
fa3725e9de flux-pmix: add v0.6.0 (#48600)
Co-authored-by: github-actions <github-actions@users.noreply.github.com>
2025-01-20 10:00:35 +01:00
Vanessasaurus
870dd6206f flux-sched: add v0.41.0(#48599)
Co-authored-by: github-actions <github-actions@users.noreply.github.com>
2025-01-20 09:57:22 +01:00
Olivier Cessenat
b1d411ab06 octave: new version 9.3.0 (#48606) 2025-01-20 09:56:55 +01:00
Massimiliano Culpo
783eccfbd5 jsonschema: use draft7 validator and simplify schemas (#48621) 2025-01-20 09:51:29 +01:00
Wouter Deconinck
a842332b1b rsync: add v3.4.0, v3.4.1 (#48607) 2025-01-20 09:50:44 +01:00
Harmen Stoppels
7e41288ca6 spack_yaml.py / spec.py: use dict instead of OrderedDict (#48616)
* for config: let `syaml_dict` inherit from `dict` instead of `OrderedDict`. `syaml_dict` now only exists as a mutable wrapper for yaml related metadata.
* for spec serialization / hashing: use `dict` directly

This is possible since we only support cpython 3.6+ in which dicts are ordered.

This improves performance of hash computation a bit. For a larger spec I'm getting 9.22ms instead of 11.9ms, so 22.5% reduction in runtime.
2025-01-20 17:33:44 +09:00
Tara Drwenski
3bb375a47f Change llvm-amdgpu to a build dependency of rocm (#48612) 2025-01-20 17:28:15 +09:00
Olivier Cessenat
478855728f ngspice: add v44 (#48611) 2025-01-20 09:27:51 +01:00
jgraciahlrs
5e3baeabfa scorep: update configure opts for libbfd (#48614) 2025-01-20 09:24:12 +01:00
Axel Huebl
58b9b54066 openPMD-api: add v0.16.1 (#48601)
* openpmd-api: add v0.16.1

Add the latest release of openPMD-api.

* TOML11: Latest Versions
2025-01-20 09:22:30 +01:00
Luca Heltai
3918deab74 dealii: add v9.6.1, and v9.6.2 (#48620) 2025-01-20 09:20:49 +01:00
Matt Thompson
ceb2ce352f mapl: add v2.52.0 (#48629) 2025-01-20 09:10:29 +01:00
Wouter Deconinck
7dc6bff7b1 root: depends_on r-rcpp@:1.0.12 when @:6.32.02 (#48625) 2025-01-20 09:05:55 +01:00
Adam J. Stewart
05fbbd7164 py-numpy: add v2.1.3, v2.2.1, v2.2.2 (#48640) 2025-01-20 08:48:56 +01:00
Juan Miguel Carceller
58421866c2 hepmc3: extend python when the python bindings are enabled (#47836)
Co-authored-by: jmcarcell <jmcarcell@users.noreply.github.com>
2025-01-20 08:46:08 +01:00
Harmen Stoppels
962498095d compat with mypy 1.14 (#48626)
* OSError.errno apparently is int | None, but already part of __str__ anyway so drop

* fix disambiguate_spec_from_hashes

* List[Spec].sort() complains, ignore it

* fix typing of KnownCompiler, and use it in asp.py
2025-01-18 21:16:05 +01:00
Anna Rift
d0217cf04e Fix two instances of duplicate 'https://' in URLs (#48628) 2025-01-17 22:59:02 -07:00
Olivier Cessenat
65745fa0df poppler: many improvements (#48627)
* poppler: many improvements

* Strangely I did not have the proper comment header

* Add a maintainer
2025-01-17 22:42:50 -07:00
John Gouwar
9f7cff1780 Stable splice-topo order for resolving splicing (#48605)
Co-authored-by: Massimiliano Culpo <massimiliano.culpo@gmail.com>
2025-01-17 16:27:16 +01:00
Harmen Stoppels
bb43fa5444 spec.py: make hashing of extra_attributes order independent (#48615) 2025-01-17 13:50:36 +01:00
Julien Loiseau
847f560a6e hard: new package (#48595) 2025-01-16 15:47:59 -07:00
Tamara Dahlgren
623ff835fc mypy: update python version to avoid error/warning (#48593)
* pyproject: remove mypy python version option since defaults to python used to run it (#48593)
2025-01-16 11:24:29 -07:00
Harmen Stoppels
ca19790ff2 py-executing: support python 3.13 (#48604) 2025-01-16 19:00:10 +01:00
acastanedam
f23366e4f8 Update elk to versions 8.8, 9.6, 10.2 (#48583) 2025-01-16 08:46:18 -08:00
Chris Marsh
42fb689501 py-pint-xarray: add version 0.4 (#47599) 2025-01-16 16:57:49 +01:00
arezaii
c33bbdb77d add Arkouda server and client packages (#48054)
Adds packages for the Arkouda server (`arkouda`) and Arkouda python client  (`py-arkouda`).

Arkouda server and client are divided into separate packages to allow for them to be
installed independently of one another. 

Future work remains to add a `+dev` variant to `py-arkouda`, but that will require additional
supporting packages made available through spack (e.g. for `py-pytest-env`
2025-01-15 21:39:23 -08:00
Laurent Chardon
1af6aa22c1 py-basemap: add v1.4.1 (#48548)
* py-basemap: add v1.4.1
* py-basemap: remove broken v1.2.1
* py-basemap: add hires variant
2025-01-15 18:05:05 -08:00
Laurent Chardon
03d9373e5c py-pycuda: add version 2024.1.2 (#48547)
* py-pycuda: add version 2024.1.2
* py-pycuda: add version 2024.1.2
* py-pycuda: Improve dependencies versions
2025-01-15 17:33:14 -08:00
HELICS-bot
f469a3d6ab helics: Add version 3.6.0 (#48000)
* helics: Add version 3.6.0
* helics: Add constraints for new minimum CMake (3.22+), Boost (1.75+), GCC (11+), Clang (15+), and ICC (21+) versions in HELICS 3.6+

---------

Co-authored-by: github-actions[bot] <github-actions[bot]@users.noreply.github.com>
Co-authored-by: Ryan Mast <mast9@llnl.gov>
2025-01-15 17:32:27 -07:00
Xuefeng Ding
25f24d947a add root to rpath of python (#48491)
* add root to rpath of python?

* fix #48446

* [@spackbot] updating style on behalf of DingXuefeng

---------

Co-authored-by: DingXuefeng <DingXuefeng@users.noreply.github.com>
Co-authored-by: Patrick Gartung <gartung@fnal.gov>
2025-01-15 14:27:59 -07:00
Sergio Sánchez Ramírez
af25a84a56 julia: bump 1.11 and 1.10 patch versions (#48149) 2025-01-15 20:23:09 +01:00
Massimiliano Culpo
59a71959e7 Fix wrong hash in spliced specs, and improve unit-tests (#48574)
Modifications:
* Fix a severe bug where a spliced spec has the same hash as the original build spec
* Removed CacheManager in favor of install_mockery. The latter sets up a temporary store, and removes it at the end 
   of the test.
* Deleted a couple of helper functions e.g. _has_dependencies
* Checked that SolverException is raised, rather than Exception (more specific)
* Extended, and renamed the splicing_setup fixture (now called install_specs)
* Added more specific assertions in each test

One test is currently flaky, due to some instability when sorting multiple specs. It's currently marked xfail
2025-01-15 19:43:55 +01:00
Harmen Stoppels
00e804a94b package.py: expose types of common globals unconditionally (#48588) 2025-01-15 17:33:38 +01:00
Harmen Stoppels
db997229f2 julia: fix forward compat with curl (#48585) 2025-01-15 16:13:37 +01:00
Massimiliano Culpo
6fac041d40 Add type-hints to which and which_string (#48554) 2025-01-15 15:24:18 +01:00
Paul R. C. Kent
f8b2c65ddf llvm: add v19.1.7 (#48572) 2025-01-15 15:22:14 +01:00
Jordan Galby
c504304d39 Add version attributes up_to_1, up_to_2, up_to_3 (#38410)
Making them also available in spec format string
2025-01-15 13:07:17 +01:00
Harmen Stoppels
976f1c2198 flag_mixing.py: add missing import (#48579) 2025-01-15 10:48:34 +01:00
Greg Becker
e7c591a8b8 Deprecate Spec.concretize/Spec.concretized in favor of spack.concretize.concretize_one (#47971)
The methods spack.spec.Spec.concretize and spack.spec.Spec.concretized
are deprecated in favor of spack.concretize.concretize_one.

This will resolve a circular dependency between the spack.spec and
spack.concretize in the next Spack release.
2025-01-15 10:13:19 +01:00
arezaii
f3522cba74 Chapel 2.3 (#48053)
* add python bindings variant to chapel
* fix chpl_home, update chapel frontend rpath in venv
* fix chpl frontend shared lib rpath hack
* patch chapel env var line length limit
* patch chapel python shared lib location by chapel version
* unhack chpl frontend lib rpath
* fix postinstall main version number file path
* update chapel version number to 2.3
* use chapel releases instead of source tarballs, remove dead code
* Chapel 2.3 adds support for LLVM 19
* Bundled LLVM always requires CMake 3.20:
* Apply 2.3 patch for LLVM include search path

Fixes build errors for `chapel@2.3+rocm` of the form:

```
compiler/llvm/llvmDebug.cpp:174:9: error: cannot convert 'const char*' to 'llvm::dwarf::MemorySpace'
compiler/llvm/llvmDebug.cpp:254:15: error: cannot convert 'const char*' to 'llvm::dwarf::MemorySpace'
```

* fix style

* Fix misreporting of test_hello failures

`test_part` was aliasing the enclosing test name, leading to confusing and incorrect reporting on test failure.

* Ensure `libxml2` optional dep of `hwloc` is also added to `PKG_CONFIG_PATH` in the run env

* patch chplCheck for GPU + multilocale configs, install docs

* Adjust patch for checkChplInstall

* Ensure `CHPL_DEVELOPER` is unset for `~developer`

---------

Co-authored-by: Dan Bonachea <dobonachea@lbl.gov>
2025-01-14 21:48:44 -08:00
Hubertus van Dam
0bd9c235a0 lammps: enable scafacos (#47638)
* Enable Scafacos in LAMMPS
* lammps: make scafacos work with +lib

---------

Co-authored-by: Richard Berger <rberger@lanl.gov>
2025-01-14 21:33:44 -07:00
jclause
335fca7049 Improve support using external modules with zsh (#48115)
* Improve support using external modules with zsh

Spack integrates with external modules by launching a python subprocess
to scrape the path from the module command. In zsh, subshells do not
inheret functions defined in the parent shell (only environment
variables). This breaks the module function in module_cmd.py.

As a workaround, source the module commands using $MODULESHOME prior to
running the module command.

* Fix formatting

* Fix flake error

* Add guard around sourcing module file

* Add improved unit testing to module src command

* Correct style

* Another attempt at style

* formatting again

* formatting again

---------

Co-authored-by: psakievich <psakiev@sandia.gov>
2025-01-14 21:29:15 -07:00
Alex Richert
ce5ef14fdb crtm: add v3.1.1-build1 (#48451)
* add crtm@3.1.1-build1
* fix url_for_version's version check

Co-authored-by: Tamara Dahlgren <35777542+tldahlgren@users.noreply.github.com>

---------

Co-authored-by: Tamara Dahlgren <35777542+tldahlgren@users.noreply.github.com>
2025-01-14 19:03:50 -07:00
Greg Becker
2447d16e55 bugfix: associate nodes directly with specs for compiler flag reordering (#48496) 2025-01-14 10:15:57 -08:00
Wouter Deconinck
8196c68ff3 py-dask: fix py-versioneer version pin (#47980)
* py-dask: fix py-versioneer version pin
* py-dask: depends_on py-click@8.1 when @2023.11.0:
* py-dask: reorder dependency lines

Co-authored-by: Sergey Kosukhin <sergey.kosukhin@mpimet.mpg.de>

---------

Co-authored-by: Sergey Kosukhin <sergey.kosukhin@mpimet.mpg.de>
2025-01-14 09:44:24 -08:00
Taillefumier Mathieu
308f74fe8b trexio: add v2.2.3 -> master (#48543)
* Update trexio
   - update version
   - add cmake support

* Fix formating

* hdf5+hl only needed when < 2.3.0

---------

Co-authored-by: Mathieu Taillefumier <mathieu.taillefumier@free.fr>
2025-01-14 09:39:43 -08:00
Ludovic Räss
864f09fef0 pism: add v2.0.7, v2.1.1 (#47921)
* Update recipe

* Update

* Update

* Cleanup

* Fixup
2025-01-14 09:20:16 -08:00
Juan Miguel Carceller
29b53581e2 bdsim: update to point to the new location in github and add 1.7.7 (#48458)
* bdsim: update to point to the new location in github and add 1.7.7

* Remove the C++ standard patch

* Remove the cmake_args and add a comment instead

---------

Co-authored-by: jmcarcell <jmcarcell@users.noreply.github.com>
2025-01-14 09:18:22 -08:00
Wouter Deconinck
e441e780b9 flatbuffers: add v24.12.23 (#48563)
* flatbuffers: add v24.12.23

* flatbuffers: fix style
2025-01-14 09:12:08 -08:00
Jean Luca Bez
4c642df5ae drishti: add v0.5, v0.6 (#39262)
* include new versions, update dependencies, add test
* Update package.py
* requested changes
* link dependency
* include commit
* fix style
2025-01-14 08:48:35 -07:00
Matt Thompson
217774c972 mepo: add v2.2.1, v2.3.0 (#48552) 2025-01-14 08:44:57 -07:00
Matthieu Dorier
8ec89fc54c pmdk: add gmake dependency, remove cmake dependency (#48544) 2025-01-14 08:44:43 -07:00
Marc T. Henry de Frahan
66ce93a2e3 Openfast version update (#48558) 2025-01-14 08:44:26 -07:00
AMD Toolchain Support
116ffe5809 ICON: Fix missing ocean variant logic handling (#48550)
Co-authored-by: Phil Tooley <phil.tooley@amd.com>
2025-01-14 08:44:01 -07:00
Hans Fangohr
6b0ea2db1d octopus: add v15.1 (#48514) 2025-01-14 08:43:45 -07:00
Harmen Stoppels
d72b371c8a relocate_text: fix return value (#48568) 2025-01-14 13:29:06 +01:00
Mikael Simberg
aa88ced154 Set CMake policy CMP0074 to the new behaviour in hip package (#48549) 2025-01-14 04:48:09 -07:00
Todd Gamblin
d89ae7bcde Database: make constructor safe for read-only filesystems (#48454)
`spack find` and other commands that read the DB will fail if the databse is in a
read-only location, because `FailureTracker` and `Database` can try to create their
parent directories when they are constructed, even if the DB root is read-only.

Instead, we should only write to the filesystem when needed.

- [x] don't create parent directories in constructors
- [x] have write operations create parents if needed
- [x] in tests, `chmod` databases to be read-only unless absolutely needed.

---------

Signed-off-by: Todd Gamblin <tgamblin@llnl.gov>
2025-01-14 00:10:51 -08:00
Harmen Stoppels
53d1665a8b traverse: use deque and popleft (#48353)
Avoids a quadratic time operation. In practice it is not really felt, cause it has a tiny constant.
But maybe in very large DAGs it is.
2025-01-14 00:09:57 -08:00
Harmen Stoppels
9fa1654102 builtin: add missing deps on gmake (#48545) 2025-01-13 22:51:20 -07:00
Julien Bigot
2c692a5755 doxygen: new versions 1.13 (#48541) 2025-01-13 21:29:40 -07:00
Hubertus van Dam
c0df012b18 py-mdi: new package (#47636)
* Adding MDI
* py-mdi: update package
* lammps: py-mdi needs to be usable at runtime
* py-mdi: update dependency constraints

---------

Co-authored-by: Richard Berger <rberger@lanl.gov>
2025-01-13 20:54:06 -07:00
Cody Balos
66e8523e14 add long_spec property to get fully enumerated spec string (#48389) 2025-01-13 16:43:39 -08:00
Paul R. C. Kent
3932299768 Add v0.3.29 (#48536) 2025-01-13 16:36:29 -08:00
Buldram
3eba6b8379 qemacs, texi2html: new packages (#48537)
* qemacs, texi2html: new packages
* Make plugin support variant
2025-01-13 16:23:40 -08:00
Wouter Deconinck
369928200a py-histoprint: add v2.5.0, v2.6.0 (switch to hatchling) (#48452)
* py-histoprint: add v2.5.0, v2.6.0 (switch to hatchling)
* py-histoprint: add tag hep
2025-01-13 13:44:39 -08:00
Olivier Cessenat
81ed0f8d87 visit: external find requires import re (#48469) 2025-01-13 13:27:31 -07:00
Adam J. Stewart
194b6311e9 GDAL: add v3.10.1 (#48551) 2025-01-13 12:04:47 -08:00
Vicente Bolea
8420898f79 vtk: add v9.4.1 (#48325) 2025-01-13 11:49:41 -08:00
Tamara Dahlgren
f556ba46d9 bugfix/r: git property needs to be classproperty (#48228) 2025-01-13 12:14:26 -06:00
Hubertus van Dam
ddaa9d5d81 pace: new package (#47561)
* Adding the PACE library to the LAMMPS build
* Adding the PACE library for ML-PACE in LAMMPS

---------

Co-authored-by: Richard Berger <rberger@lanl.gov>
2025-01-13 10:28:05 -07:00
Wouter Deconinck
b878fe5555 boost: add v1.87.0, update depdendents' constraints (#48475)
* boost: add 1.87.0

* boost: revert addition of parser variant

* precice: forward compatibility boost@:1.86 when @:3.1.2

* faodel: forward compatibility boost@:1.86 when @:1.2108.1

* boost: conflicts ~python when +mpi @1.87.0:
2025-01-13 09:19:30 -08:00
afzpatel
b600bfc779 hipsparselt, rocalution and omniperf: update hipsparselt and rocalutuion to 6.3.0 and fix omniperf typo (#48374)
* hipsparselt and omniperf: update hipsparselt to 6.3.0 and fix typo in omniperf

* fix style

* update rocalution to 6.3.0
2025-01-13 09:18:28 -08:00
Wouter Deconinck
612c289c41 dbus: add v1.16.0 (#48531) 2025-01-13 16:41:16 +01:00
Harmen Stoppels
e42c76cccf py-ipython: relax py-jedi forward compat (#48542) 2025-01-13 15:12:24 +01:00
Wouter Deconinck
25013bacf2 hep stack: add pandora PFA suite (#48497) 2025-01-13 13:41:01 +01:00
Carlos Bederián
3d554db198 hpl: build v2.3 with timers (#48206)
Co-authored-by: zzzoom <zzzoom@users.noreply.github.com>
Co-authored-by: Massimiliano Culpo <massimiliano.culpo@gmail.com>
2025-01-13 13:04:49 +01:00
Wouter Deconinck
b6def50dcb py-webcolors: add v24.8.0, v24.11.1 (switch to pdm-backend) (#48398) 2025-01-13 13:03:56 +01:00
Wouter Deconinck
bf591c96bd py-llvmlite: add v0.42.0, v0.43.0; py-numba: add v0.59.1, v0.60.0 (#48399) 2025-01-13 13:03:33 +01:00
Wouter Deconinck
edf1d2ec40 py-pre-commit: add v3.6.2, v3.7.1, v3.8.0, v4.0.1 (#48400) 2025-01-13 13:03:06 +01:00
Adam J. Stewart
07f607ec9f PyTorch: remove +onnx_ml variant (#48406) 2025-01-13 13:02:21 +01:00
Olivier Cessenat
93747c5e24 gxsview: making sure -lstdc++fs is added (#47703)
Co-authored-by: Olivier Cessenat <cessenat@jliana.magic>
2025-01-13 13:01:03 +01:00
Thomas Helfer
b746d4596a tfel: update package to transition from boost/python to pybind11 (#48237) 2025-01-13 12:59:22 +01:00
G-Ragghianti
8814705936 papi: fix erroneous patch application (#48428) 2025-01-13 12:56:28 +01:00
Harmen Stoppels
c989541ebc lmod: fix build on macOS (#48438) 2025-01-13 12:53:11 +01:00
Krishna Chilleri
1759ce05dd py-graphviz: add v0.20.3 (#48280) 2025-01-13 12:49:57 +01:00
Wouter Deconinck
c0c1a4aea1 podio: add v1.2; conflicts +rntuple ^root@6.32: when @:0.99 (#47991)
Co-authored-by: Thomas Madlener <thomas.madlener@desy.de>
2025-01-13 12:48:25 +01:00
Wouter Deconinck
53353ae64e hep stack: add scikit-hep packages (#48412) 2025-01-13 12:40:29 +01:00
Wouter Deconinck
62f7a4c9b1 py-wxpython: depends_on wxwidgets +gui (#48499) 2025-01-13 12:31:13 +01:00
Massimiliano Culpo
39679d0882 otf2: add a dependency on Fortran (#48506)
See https://gitlab.spack.io/spack/spack/-/jobs/14423941

From https://gitlab.com/score-p/scorep/-/blob/master/INSTALL?ref_type=heads

> Score-P requires a full compiler suite with language support for C99,
> C++11 and optionally Fortran 77 and Fortran 90.
2025-01-13 12:28:14 +01:00
Ufuk Turunçoğlu
50e6bf9979 esmf: add v8.8.0 (#48495) 2025-01-13 12:25:04 +01:00
Olivier Cessenat
b874c31cc8 keepassxc: adding versions 2.7.8 and 2.7.9 (#48518) 2025-01-13 12:22:55 +01:00
Adam J. Stewart
04baad90f5 py-lightning-uq-box: add v0.2.0 (#48305) 2025-01-13 12:22:04 +01:00
Adam J. Stewart
1022527923 py-ruff: add v0.9.1 (#48519) 2025-01-13 12:20:53 +01:00
Alberto Invernizzi
7ef19ec1d8 gnupg: bump versions and update libassuan requirement (#48520) 2025-01-13 12:19:38 +01:00
Wouter Deconinck
6e45b51f27 cepgen: add v1.2.5 (#48524) 2025-01-13 12:16:31 +01:00
Adam J. Stewart
5f9cd0991b py-timm: add v1.0.13 (#48526) 2025-01-13 12:15:19 +01:00
Wouter Deconinck
98c44fc351 hep stack: root +postgres (#48498) 2025-01-13 12:11:19 +01:00
Adam J. Stewart
b99f850c8e py-scipy: add v1.15.1 (#48523) 2025-01-13 12:07:30 +01:00
Adam J. Stewart
cbbd68d16b py-scikit-learn: add v1.6.1 (#48525) 2025-01-13 12:07:06 +01:00
Wouter Deconinck
e4fbf99497 dcap: depends_on openssl and zlib-api (#48529) 2025-01-13 12:06:29 +01:00
Wouter Deconinck
6a225d5405 dpmjet: add v19.3.6, v19.3.7; add to hep stack (#48530) 2025-01-13 12:05:45 +01:00
Wouter Deconinck
af9fd82476 acts: conflict ~svg ~json when +traccc (#48534) 2025-01-13 11:51:05 +01:00
Carson Woods
29c1152484 py-rich-click: added new versions and dependencies (#48270) 2025-01-13 11:48:10 +01:00
Wouter Deconinck
d6a8af6a1d py-asdf: depends_on py-setuptools-scm@8: (#48538) 2025-01-13 11:44:44 +01:00
Adam J. Stewart
3c3dad0a7a py-kornia: add v0.8.0 (#48522) 2025-01-13 11:43:33 +01:00
Wouter Deconinck
109efdff88 vbfnlo: deprecated 3.0.0beta* since 3.0 < 3.0.0beta (#48516) 2025-01-13 11:35:38 +01:00
Wouter Deconinck
fa318e2c92 lcio: add v2.22.3 (#48532) 2025-01-13 10:45:28 +01:00
Harmen Stoppels
064e70990d binary_distribution.py: stop relocation old /bin/bash sbang shebang (#48502) 2025-01-13 09:30:18 +01:00
Michael Kuhn
c40139b7d6 builtin: fix pkgconfig dependencies (#48533)
`pkgconfig` is the virtual dependency, `pkg-config` and `pkgconf` are
implementations.
2025-01-13 08:40:49 +01:00
Wouter Deconinck
c302e1a768 builtin: add undeclared gmake dependencies (#48535) 2025-01-13 08:38:37 +01:00
Harmen Stoppels
7171015f1c py-mypy: add v1.13.0 and v1.14.1 (#48508)
* py-setuptools: add v75.3.0, v75.8.0
* py-radical-utils: forward compat with setuptools
2025-01-12 17:18:09 +01:00
Massimiliano Culpo
8ab6f33eb6 Deprecate make, gmake and ninja globals in package API (#48450)
Instead, depends_on("gmake", type="build") should be used, which makes the global available through `setup_dependent_package`.
2025-01-11 22:43:22 +01:00
John W. Parent
a66ab9cc6c CMake: add versions 3.31.3 and 3.31.4 (#48509) 2025-01-11 11:38:36 -07:00
1187 changed files with 19207 additions and 13351 deletions

View File

@@ -40,17 +40,17 @@ jobs:
# 1: Platforms to build for
# 2: Base image (e.g. ubuntu:22.04)
dockerfile: [[amazon-linux, 'linux/amd64,linux/arm64', 'amazonlinux:2'],
[centos-stream9, 'linux/amd64,linux/arm64,linux/ppc64le', 'centos:stream9'],
[leap15, 'linux/amd64,linux/arm64,linux/ppc64le', 'opensuse/leap:15'],
[ubuntu-focal, 'linux/amd64,linux/arm64,linux/ppc64le', 'ubuntu:20.04'],
[ubuntu-jammy, 'linux/amd64,linux/arm64,linux/ppc64le', 'ubuntu:22.04'],
[ubuntu-noble, 'linux/amd64,linux/arm64,linux/ppc64le', 'ubuntu:24.04'],
[almalinux8, 'linux/amd64,linux/arm64,linux/ppc64le', 'almalinux:8'],
[almalinux9, 'linux/amd64,linux/arm64,linux/ppc64le', 'almalinux:9'],
[centos-stream9, 'linux/amd64,linux/arm64', 'centos:stream9'],
[leap15, 'linux/amd64,linux/arm64', 'opensuse/leap:15'],
[ubuntu-focal, 'linux/amd64,linux/arm64', 'ubuntu:20.04'],
[ubuntu-jammy, 'linux/amd64,linux/arm64', 'ubuntu:22.04'],
[ubuntu-noble, 'linux/amd64,linux/arm64', 'ubuntu:24.04'],
[almalinux8, 'linux/amd64,linux/arm64', 'almalinux:8'],
[almalinux9, 'linux/amd64,linux/arm64', 'almalinux:9'],
[rockylinux8, 'linux/amd64,linux/arm64', 'rockylinux:8'],
[rockylinux9, 'linux/amd64,linux/arm64', 'rockylinux:9'],
[fedora39, 'linux/amd64,linux/arm64,linux/ppc64le', 'fedora:39'],
[fedora40, 'linux/amd64,linux/arm64,linux/ppc64le', 'fedora:40']]
[fedora39, 'linux/amd64,linux/arm64', 'fedora:39'],
[fedora40, 'linux/amd64,linux/arm64', 'fedora:40']]
name: Build ${{ matrix.dockerfile[0] }}
if: github.repository == 'spack/spack'
steps:

View File

@@ -81,6 +81,10 @@ jobs:
with:
with_coverage: ${{ needs.changes.outputs.core }}
import-check:
needs: [ changes ]
uses: ./.github/workflows/import-check.yaml
all-prechecks:
needs: [ prechecks ]
if: ${{ always() }}

View File

@@ -33,3 +33,4 @@ jobs:
with:
verbose: true
fail_ci_if_error: false
token: ${{ secrets.CODECOV_TOKEN }}

49
.github/workflows/import-check.yaml vendored Normal file
View File

@@ -0,0 +1,49 @@
name: import-check
on:
workflow_call:
jobs:
# Check we don't make the situation with circular imports worse
import-check:
runs-on: ubuntu-latest
steps:
- uses: julia-actions/setup-julia@v2
with:
version: '1.10'
- uses: julia-actions/cache@v2
# PR: use the base of the PR as the old commit
- name: Checkout PR base commit
if: github.event_name == 'pull_request'
uses: actions/checkout@11bd71901bbe5b1630ceea73d27597364c9af683
with:
ref: ${{ github.event.pull_request.base.sha }}
path: old
# not a PR: use the previous commit as the old commit
- name: Checkout previous commit
if: github.event_name != 'pull_request'
uses: actions/checkout@11bd71901bbe5b1630ceea73d27597364c9af683
with:
fetch-depth: 2
path: old
- name: Checkout previous commit
if: github.event_name != 'pull_request'
run: git -C old reset --hard HEAD^
- name: Checkout new commit
uses: actions/checkout@11bd71901bbe5b1630ceea73d27597364c9af683
with:
path: new
- name: Install circular import checker
uses: actions/checkout@11bd71901bbe5b1630ceea73d27597364c9af683
with:
repository: haampie/circular-import-fighter
ref: 4cdb0bf15f04ab6b49041d5ef1bfd9644cce7f33
path: circular-import-fighter
- name: Install dependencies
working-directory: circular-import-fighter
run: make -j dependencies
- name: Circular import check
working-directory: circular-import-fighter
run: make -j compare "SPACK_ROOT=../old ../new"

View File

@@ -61,7 +61,7 @@ jobs:
run: "brew install kcov"
- name: Install Python packages
run: |
pip install --upgrade pip setuptools pytest pytest-xdist pytest-cov clingo
pip install --upgrade pip setuptools pytest pytest-xdist pytest-cov
pip install --upgrade flake8 "isort>=4.3.5" "mypy>=0.900" "click" "black"
- name: Setup git configuration
run: |
@@ -185,6 +185,7 @@ jobs:
spack bootstrap disable github-actions-v0.5
spack bootstrap disable github-actions-v0.6
spack bootstrap status
spack solve zlib
spack unit-test --verbose --cov --cov-config=pyproject.toml --cov-report=xml:coverage.xml lib/spack/spack/test/concretization/core.py
- uses: actions/upload-artifact@6f51ac03b9356f520e9adb1b1b7802705f340c2b
with:
@@ -222,7 +223,7 @@ jobs:
. share/spack/setup-env.sh
$(which spack) bootstrap disable spack-install
$(which spack) solve zlib
common_args=(--dist loadfile --tx '4*popen//python=./bin/spack-tmpconfig python -u ./bin/spack python')
common_args=(--dist loadfile --tx '4*popen//python=./bin/spack-tmpconfig python -u ./bin/spack python' -x)
$(which spack) unit-test --verbose --cov --cov-config=pyproject.toml --cov-report=xml:coverage.xml "${common_args[@]}"
- uses: actions/upload-artifact@6f51ac03b9356f520e9adb1b1b7802705f340c2b
with:
@@ -253,7 +254,7 @@ jobs:
env:
COVERAGE_FILE: coverage/.coverage-windows
run: |
spack unit-test --verbose --cov --cov-config=pyproject.toml
spack unit-test -x --verbose --cov --cov-config=pyproject.toml
./share/spack/qa/validate_last_exit.ps1
- uses: actions/upload-artifact@6f51ac03b9356f520e9adb1b1b7802705f340c2b
with:

View File

@@ -86,66 +86,6 @@ jobs:
spack -d bootstrap now --dev
spack -d style -t black
spack unit-test -V
# Check we don't make the situation with circular imports worse
import-check:
runs-on: ubuntu-latest
steps:
- uses: julia-actions/setup-julia@v2
with:
version: '1.10'
- uses: julia-actions/cache@v2
# PR: use the base of the PR as the old commit
- name: Checkout PR base commit
if: github.event_name == 'pull_request'
uses: actions/checkout@11bd71901bbe5b1630ceea73d27597364c9af683
with:
ref: ${{ github.event.pull_request.base.sha }}
path: old
# not a PR: use the previous commit as the old commit
- name: Checkout previous commit
if: github.event_name != 'pull_request'
uses: actions/checkout@11bd71901bbe5b1630ceea73d27597364c9af683
with:
fetch-depth: 2
path: old
- name: Checkout previous commit
if: github.event_name != 'pull_request'
run: git -C old reset --hard HEAD^
- name: Checkout new commit
uses: actions/checkout@11bd71901bbe5b1630ceea73d27597364c9af683
with:
path: new
- name: Install circular import checker
uses: actions/checkout@11bd71901bbe5b1630ceea73d27597364c9af683
with:
repository: haampie/circular-import-fighter
ref: b5d6ce9be35f602cca7d5a6aa0259fca10639cca
path: circular-import-fighter
- name: Install dependencies
working-directory: circular-import-fighter
run: make -j dependencies
- name: Problematic imports before
working-directory: circular-import-fighter
run: make SPACK_ROOT=../old SUFFIX=.old
- name: Problematic imports after
working-directory: circular-import-fighter
run: make SPACK_ROOT=../new SUFFIX=.new
- name: Compare import cycles
working-directory: circular-import-fighter
run: |
edges_before="$(head -n1 solution.old)"
edges_after="$(head -n1 solution.new)"
if [ "$edges_after" -gt "$edges_before" ]; then
printf '\033[1;31mImport check failed: %s imports need to be deleted, ' "$edges_after"
printf 'previously this was %s\033[0m\n' "$edges_before"
printf 'Compare \033[1;97m"Problematic imports before"\033[0m and '
printf '\033[1;97m"Problematic imports after"\033[0m.\n'
exit 1
else
printf '\033[1;32mImport check passed: %s <= %s\033[0m\n' "$edges_after" "$edges_before"
fi
# Further style checks from pylint
pylint:

View File

@@ -25,7 +25,6 @@ exit 1
# The code above runs this file with our preferred python interpreter.
import os
import os.path
import sys
min_python3 = (3, 6)

View File

@@ -63,3 +63,7 @@ concretizer:
# Setting this to false yields unreproducible results, so we advise to use that value only
# for debugging purposes (e.g. check which constraints can help Spack concretize faster).
error_on_timeout: true
# Static analysis may reduce the concretization time by generating smaller ASP problems, in
# cases where there are requirements that prevent part of the search space to be explored.
static_analysis: false

View File

@@ -19,7 +19,7 @@ config:
install_tree:
root: $spack/opt/spack
projections:
all: "{architecture.platform}-{architecture.target}/{name}-{version}-{hash}"
all: "{architecture}/{compiler.name}-{compiler.version}/{name}-{version}-{hash}"
# install_tree can include an optional padded length (int or boolean)
# default is False (do not pad)
# if padded_length is True, Spack will pad as close to the system max path

View File

@@ -15,11 +15,12 @@
# -------------------------------------------------------------------------
packages:
all:
compiler:
- apple-clang
- clang
- gcc
providers:
c: [apple-clang, llvm, gcc]
cxx: [apple-clang, llvm, gcc]
elf: [libelf]
fortran: [gcc]
fuse: [macfuse]
gl: [apple-gl]
glu: [apple-glu]

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@@ -15,18 +15,19 @@
# -------------------------------------------------------------------------
packages:
all:
compiler: [gcc, clang, oneapi, xl, nag, fj, aocc]
providers:
awk: [gawk]
armci: [armcimpi]
blas: [openblas, amdblis]
c: [gcc, llvm, intel-oneapi-compilers, xl, aocc]
cxx: [gcc, llvm, intel-oneapi-compilers, xl, aocc]
c: [gcc]
cxx: [gcc]
D: [ldc]
daal: [intel-oneapi-daal]
elf: [elfutils]
fftw-api: [fftw, amdfftw]
flame: [libflame, amdlibflame]
fortran: [gcc, llvm]
fortran: [gcc]
fortran-rt: [gcc-runtime, intel-oneapi-runtime]
fuse: [libfuse]
gl: [glx, osmesa]
@@ -35,7 +36,7 @@ packages:
go-or-gccgo-bootstrap: [go-bootstrap, gcc]
iconv: [libiconv]
ipp: [intel-oneapi-ipp]
java: [openjdk, jdk, ibm-java]
java: [openjdk, jdk]
jpeg: [libjpeg-turbo, libjpeg]
lapack: [openblas, amdlibflame]
libc: [glibc, musl]
@@ -72,15 +73,27 @@ packages:
permissions:
read: world
write: user
cray-fftw:
buildable: false
cray-libsci:
buildable: false
cray-mpich:
buildable: false
cray-mvapich2:
buildable: false
cray-pmi:
buildable: false
egl:
buildable: false
essl:
buildable: false
fujitsu-mpi:
buildable: false
fujitsu-ssl2:
buildable: false
hpcx-mpi:
buildable: false
mpt:
buildable: false
spectrum-mpi:
buildable: false

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@@ -1,5 +1,5 @@
config:
locks: false
build_stage::
- '$spack/.staging'
- '$user_cache_path/stage'
stage_name: '{name}-{version}-{hash:7}'

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@@ -15,8 +15,8 @@
# -------------------------------------------------------------------------
packages:
all:
compiler:
- msvc
providers:
c : [msvc]
cxx: [msvc]
mpi: [msmpi]
gl: [wgl]

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@@ -170,7 +170,7 @@ bootstrapping.
To register the mirror on the platform where it's supposed to be used run the following command(s):
% spack bootstrap add --trust local-sources /opt/bootstrap/metadata/sources
% spack bootstrap add --trust local-binaries /opt/bootstrap/metadata/binaries
% spack buildcache update-index /opt/bootstrap/bootstrap_cache
This command needs to be run on a machine with internet access and the resulting folder
has to be moved over to the air-gapped system. Once the local sources are added using the

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@@ -272,9 +272,9 @@ often lists dependencies and the flags needed to locate them. The
"environment variables" section lists environment variables that the
build system uses to pass flags to the compiler and linker.
^^^^^^^^^^^^^^^^^^^^^^^^^^
Addings flags to configure
^^^^^^^^^^^^^^^^^^^^^^^^^^
^^^^^^^^^^^^^^^^^^^^^^^^^
Adding flags to configure
^^^^^^^^^^^^^^^^^^^^^^^^^
For most of the flags you encounter, you will want a variant to
optionally enable/disable them. You can then optionally pass these
@@ -285,7 +285,7 @@ function like so:
def configure_args(self):
args = []
...
if self.spec.satisfies("+mpi"):
args.append("--enable-mpi")
else:
@@ -299,7 +299,10 @@ Alternatively, you can use the :ref:`enable_or_disable <autotools_enable_or_dis
.. code-block:: python
def configure_args(self):
return [self.enable_or_disable("mpi")]
args = []
...
args.extend(self.enable_or_disable("mpi"))
return args
Note that we are explicitly disabling MPI support if it is not
@@ -344,7 +347,14 @@ typically used to enable or disable some feature within the package.
default=False,
description="Memchecker support for debugging [degrades performance]"
)
config_args.extend(self.enable_or_disable("memchecker"))
...
def configure_args(self):
args = []
...
args.extend(self.enable_or_disable("memchecker"))
return args
In this example, specifying the variant ``+memchecker`` will generate
the following configuration options:

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@@ -56,13 +56,13 @@ If you look at the ``perl`` package, you'll see:
.. code-block:: python
phases = ["configure", "build", "install"]
phases = ("configure", "build", "install")
Similarly, ``cmake`` defines:
.. code-block:: python
phases = ["bootstrap", "build", "install"]
phases = ("bootstrap", "build", "install")
If we look at the ``cmake`` example, this tells Spack's ``PackageBase``
class to run the ``bootstrap``, ``build``, and ``install`` functions

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@@ -361,7 +361,6 @@ and the tags associated with the class of runners to build on.
* ``.linux_neoverse_n1``
* ``.linux_neoverse_v1``
* ``.linux_neoverse_v2``
* ``.linux_power``
* ``.linux_skylake``
* ``.linux_x86_64``
* ``.linux_x86_64_v4``

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@@ -543,10 +543,10 @@ With either interpreter you can run a single command:
.. code-block:: console
$ spack python -c 'from spack.spec import Spec; Spec("python").concretized()'
$ spack python -c 'from spack.concretize import concretize_one; concretize_one("python")'
...
$ spack python -i ipython -c 'from spack.spec import Spec; Spec("python").concretized()'
$ spack python -i ipython -c 'from spack.concretize import concretize_one; concretize_one("python")'
Out[1]: ...
or a file:

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@@ -112,6 +112,19 @@ the original but may concretize differently in the presence of different
explicit or default configuration settings (e.g., a different version of
Spack or for a different user account).
Environments created from a manifest will copy any included configs
from relative paths inside the environment. Relative paths from
outside the environment will cause errors, and absolute paths will be
kept absolute. For example, if ``spack.yaml`` includes:
.. code-block:: yaml
spack:
include: [./config.yaml]
then the created environment will have its own copy of the file
``config.yaml`` copied from the location in the original environment.
Create an environment from a ``spack.lock`` file using:
.. code-block:: console
@@ -160,7 +173,7 @@ accepts. If an environment already exists then spack will simply activate it
and ignore the create-specific flags.
.. code-block:: console
$ spack env activate --create -p myenv
# ...
# [creates if myenv does not exist yet]
@@ -424,8 +437,8 @@ Developing Packages in a Spack Environment
The ``spack develop`` command allows one to develop Spack packages in
an environment. It requires a spec containing a concrete version, and
will configure Spack to install the package from local source.
If a version is not provided from the command line interface then spack
will configure Spack to install the package from local source.
If a version is not provided from the command line interface then spack
will automatically pick the highest version the package has defined.
This means any infinity versions (``develop``, ``main``, ``stable``) will be
preferred in this selection process.
@@ -435,9 +448,9 @@ set, and Spack will ensure the package and its dependents are rebuilt
any time the environment is installed if the package's local source
code has been modified. Spack's native implementation to check for modifications
is to check if ``mtime`` is newer than the installation.
A custom check can be created by overriding the ``detect_dev_src_change`` method
in your package class. This is particularly useful for projects using custom spack repo's
to drive development and want to optimize performance.
A custom check can be created by overriding the ``detect_dev_src_change`` method
in your package class. This is particularly useful for projects using custom spack repo's
to drive development and want to optimize performance.
Spack ensures that all instances of a
developed package in the environment are concretized to match the
@@ -453,7 +466,7 @@ Further development on ``foo`` can be tested by re-installing the environment,
and eventually committed and pushed to the upstream git repo.
If the package being developed supports out-of-source builds then users can use the
``--build_directory`` flag to control the location and name of the build directory.
``--build_directory`` flag to control the location and name of the build directory.
This is a shortcut to set the ``package_attributes:build_directory`` in the
``packages`` configuration (see :ref:`assigning-package-attributes`).
The supplied location will become the build-directory for that package in all future builds.

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@@ -456,14 +456,13 @@ For instance, the following config options,
tcl:
all:
suffixes:
^python@3: 'python{^python.version}'
^python@3: 'python{^python.version.up_to_2}'
^openblas: 'openblas'
will add a ``python-3.12.1`` version string to any packages compiled with
Python matching the spec, ``python@3``. This is useful to know which
version of Python a set of Python extensions is associated with. Likewise, the
``openblas`` string is attached to any program that has openblas in the spec,
most likely via the ``+blas`` variant specification.
will add a ``python3.12`` to module names of packages compiled with Python 3.12, and similarly for
all specs depending on ``python@3``. This is useful to know which version of Python a set of Python
extensions is associated with. Likewise, the ``openblas`` string is attached to any program that
has openblas in the spec, most likely via the ``+blas`` variant specification.
The most heavyweight solution to module naming is to change the entire
naming convention for module files. This uses the projections format

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@@ -330,7 +330,7 @@ that ``--tests`` is passed to ``spack ci rebuild`` as part of the
- spack --version
- cd ${SPACK_CONCRETE_ENV_DIR}
- spack env activate --without-view .
- spack config add "config:install_tree:projections:${SPACK_JOB_SPEC_PKG_NAME}:'morepadding/{architecture.platform}-{architecture.target}/{name}-{version}-{hash}'"
- spack config add "config:install_tree:projections:${SPACK_JOB_SPEC_PKG_NAME}:'morepadding/{architecture}/{compiler.name}-{compiler.version}/{name}-{version}-{hash}'"
- mkdir -p ${SPACK_ARTIFACTS_ROOT}/user_data
- if [[ -r /mnt/key/intermediate_ci_signing_key.gpg ]]; then spack gpg trust /mnt/key/intermediate_ci_signing_key.gpg; fi
- if [[ -r /mnt/key/spack_public_key.gpg ]]; then spack gpg trust /mnt/key/spack_public_key.gpg; fi

1
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@@ -0,0 +1 @@
../cc

1
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@@ -0,0 +1 @@
../cpp

1
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@@ -0,0 +1 @@
../fc

1
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@@ -0,0 +1 @@
../cc

1
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@@ -0,0 +1 @@
../cc

1
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@@ -0,0 +1 @@
../cc

1
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@@ -0,0 +1 @@
cc

1
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@@ -0,0 +1 @@
cc

1
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@@ -0,0 +1 @@
cc

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@@ -0,0 +1 @@
../cc

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@@ -39,6 +39,12 @@ readonly params="\
SPACK_ENV_PATH
SPACK_DEBUG_LOG_DIR
SPACK_DEBUG_LOG_ID
SPACK_COMPILER_SPEC
SPACK_CC_RPATH_ARG
SPACK_CXX_RPATH_ARG
SPACK_F77_RPATH_ARG
SPACK_FC_RPATH_ARG
SPACK_LINKER_ARG
SPACK_SHORT_SPEC
SPACK_SYSTEM_DIRS
SPACK_MANAGED_DIRS"
@@ -339,9 +345,6 @@ case "$command" in
;;
ld|ld.gold|ld.lld)
mode=ld
if [ -z "$SPACK_CC_RPATH_ARG" ]; then
comp="CXX"
fi
;;
*)
die "Unknown compiler: $command"
@@ -396,12 +399,10 @@ fi
#
dtags_to_add="${SPACK_DTAGS_TO_ADD}"
dtags_to_strip="${SPACK_DTAGS_TO_STRIP}"
linker_arg="ERROR: LINKER ARG WAS NOT SET, MAYBE THE PACKAGE DOES NOT DEPEND ON ${comp}?"
eval "linker_arg=\${SPACK_${comp}_LINKER_ARG:?${linker_arg}}"
linker_arg="${SPACK_LINKER_ARG}"
# Set up rpath variable according to language.
rpath="ERROR: RPATH ARG WAS NOT SET, MAYBE THE PACKAGE DOES NOT DEPEND ON ${comp}?"
rpath="ERROR: RPATH ARG WAS NOT SET"
eval "rpath=\${SPACK_${comp}_RPATH_ARG:?${rpath}}"
# Dump the mode and exit if the command is dump-mode.
@@ -410,6 +411,13 @@ if [ "$SPACK_TEST_COMMAND" = "dump-mode" ]; then
exit
fi
# If, say, SPACK_CC is set but SPACK_FC is not, we want to know. Compilers do not
# *have* to set up Fortran executables, so we need to tell the user when a build is
# about to attempt to use them unsuccessfully.
if [ -z "$command" ]; then
die "Compiler '$SPACK_COMPILER_SPEC' does not have a $language compiler configured."
fi
#
# Filter '.' and Spack environment directories out of PATH so that
# this script doesn't just call itself
@@ -779,17 +787,15 @@ case "$mode" in
C)
extend spack_flags_list SPACK_ALWAYS_CFLAGS
extend spack_flags_list SPACK_CFLAGS
preextend flags_list SPACK_TARGET_ARGS_CC
;;
CXX)
extend spack_flags_list SPACK_ALWAYS_CXXFLAGS
extend spack_flags_list SPACK_CXXFLAGS
preextend flags_list SPACK_TARGET_ARGS_CXX
;;
F)
preextend flags_list SPACK_TARGET_ARGS_FORTRAN
;;
esac
# prepend target args
preextend flags_list SPACK_TARGET_ARGS
;;
esac

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../../cc

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../../cc

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../cc

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cc

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cc

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cc

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cc

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cc

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cc

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@@ -3,7 +3,7 @@
# SPDX-License-Identifier: (Apache-2.0 OR MIT)
"""URL primitives that just require Python standard library."""
import itertools
import os.path
import os
import re
from typing import Optional, Set, Tuple
from urllib.parse import urlsplit, urlunsplit

View File

@@ -75,7 +75,6 @@
"install_tree",
"is_exe",
"join_path",
"last_modification_time_recursive",
"library_extensions",
"mkdirp",
"partition_path",
@@ -669,7 +668,7 @@ def copy(src, dest, _permissions=False):
_permissions (bool): for internal use only
Raises:
IOError: if *src* does not match any files or directories
OSError: if *src* does not match any files or directories
ValueError: if *src* matches multiple files but *dest* is
not a directory
"""
@@ -680,7 +679,7 @@ def copy(src, dest, _permissions=False):
files = glob.glob(src)
if not files:
raise IOError("No such file or directory: '{0}'".format(src))
raise OSError("No such file or directory: '{0}'".format(src))
if len(files) > 1 and not os.path.isdir(dest):
raise ValueError(
"'{0}' matches multiple files but '{1}' is not a directory".format(src, dest)
@@ -711,7 +710,7 @@ def install(src, dest):
dest (str): the destination file or directory
Raises:
IOError: if *src* does not match any files or directories
OSError: if *src* does not match any files or directories
ValueError: if *src* matches multiple files but *dest* is
not a directory
"""
@@ -749,7 +748,7 @@ def copy_tree(
_permissions (bool): for internal use only
Raises:
IOError: if *src* does not match any files or directories
OSError: if *src* does not match any files or directories
ValueError: if *src* is a parent directory of *dest*
"""
if _permissions:
@@ -763,7 +762,7 @@ def copy_tree(
files = glob.glob(src)
if not files:
raise IOError("No such file or directory: '{0}'".format(src))
raise OSError("No such file or directory: '{0}'".format(src))
# For Windows hard-links and junctions, the source path must exist to make a symlink. Add
# all symlinks to this list while traversing the tree, then when finished, make all
@@ -844,7 +843,7 @@ def install_tree(src, dest, symlinks=True, ignore=None):
ignore (typing.Callable): function indicating which files to ignore
Raises:
IOError: if *src* does not match any files or directories
OSError: if *src* does not match any files or directories
ValueError: if *src* is a parent directory of *dest*
"""
copy_tree(src, dest, symlinks=symlinks, ignore=ignore, _permissions=True)
@@ -1470,15 +1469,36 @@ def set_executable(path):
@system_path_filter
def last_modification_time_recursive(path):
path = os.path.abspath(path)
times = [os.stat(path).st_mtime]
times.extend(
os.lstat(os.path.join(root, name)).st_mtime
for root, dirs, files in os.walk(path)
for name in dirs + files
)
return max(times)
def recursive_mtime_greater_than(path: str, time: float) -> bool:
"""Returns true if any file or dir recursively under `path` has mtime greater than `time`."""
# use bfs order to increase likelihood of early return
queue: Deque[str] = collections.deque([path])
if os.stat(path).st_mtime > time:
return True
while queue:
current = queue.popleft()
try:
entries = os.scandir(current)
except OSError:
continue
with entries:
for entry in entries:
try:
st = entry.stat(follow_symlinks=False)
except OSError:
continue
if st.st_mtime > time:
return True
if entry.is_dir(follow_symlinks=False):
queue.append(entry.path)
return False
@system_path_filter
@@ -1740,8 +1760,7 @@ def find(
def _log_file_access_issue(e: OSError, path: str) -> None:
errno_name = errno.errorcode.get(e.errno, "UNKNOWN")
tty.debug(f"find must skip {path}: {errno_name} {e}")
tty.debug(f"find must skip {path}: {e}")
def _file_id(s: os.stat_result) -> Tuple[int, int]:

View File

@@ -72,7 +72,7 @@ def index_by(objects, *funcs):
if isinstance(f, str):
f = lambda x: getattr(x, funcs[0])
elif isinstance(f, tuple):
f = lambda x: tuple(getattr(x, p, None) for p in funcs[0])
f = lambda x: tuple(getattr(x, p) for p in funcs[0])
result = {}
for o in objects:
@@ -996,8 +996,11 @@ def _receive_forwarded(self, context: str, exc: Exception, tb: List[str]):
def grouped_message(self, with_tracebacks: bool = True) -> str:
"""Print out an error message coalescing all the forwarded errors."""
each_exception_message = [
"\n\t{0} raised {1}: {2}\n{3}".format(
context, exc.__class__.__name__, exc, f"\n{''.join(tb)}" if with_tracebacks else ""
"{0} raised {1}: {2}{3}".format(
context,
exc.__class__.__name__,
exc,
"\n{0}".format("".join(tb)) if with_tracebacks else "",
)
for context, exc, tb in self.exceptions
]

View File

@@ -308,7 +308,7 @@ class LinkTree:
def __init__(self, source_root):
if not os.path.exists(source_root):
raise IOError("No such file or directory: '%s'", source_root)
raise OSError("No such file or directory: '%s'", source_root)
self._root = source_root

View File

@@ -391,7 +391,7 @@ def _poll_lock(self, op: int) -> bool:
return True
except IOError as e:
except OSError as e:
# EAGAIN and EACCES == locked by another process (so try again)
if e.errno not in (errno.EAGAIN, errno.EACCES):
raise

View File

@@ -344,26 +344,6 @@ def close(self):
self.file.close()
@contextmanager
def replace_environment(env):
"""Replace the current environment (`os.environ`) with `env`.
If `env` is empty (or None), this unsets all current environment
variables.
"""
env = env or {}
old_env = os.environ.copy()
try:
os.environ.clear()
for name, val in env.items():
os.environ[name] = val
yield
finally:
os.environ.clear()
for name, val in old_env.items():
os.environ[name] = val
def log_output(*args, **kwargs):
"""Context manager that logs its output to a file.
@@ -447,7 +427,6 @@ def __init__(
self.echo = echo
self.debug = debug
self.buffer = buffer
self.env = env # the environment to use for _writer_daemon
self.filter_fn = filter_fn
self._active = False # used to prevent re-entry
@@ -519,21 +498,20 @@ def __enter__(self):
# just don't forward input if this fails
pass
with replace_environment(self.env):
self.process = multiprocessing.Process(
target=_writer_daemon,
args=(
input_fd,
read_fd,
self.write_fd,
self.echo,
self.log_file,
child_pipe,
self.filter_fn,
),
)
self.process.daemon = True # must set before start()
self.process.start()
self.process = multiprocessing.Process(
target=_writer_daemon,
args=(
input_fd,
read_fd,
self.write_fd,
self.echo,
self.log_file,
child_pipe,
self.filter_fn,
),
)
self.process.daemon = True # must set before start()
self.process.start()
finally:
if input_fd:
@@ -729,10 +707,7 @@ class winlog:
Does not support the use of 'v' toggling as nixlog does.
"""
def __init__(
self, file_like=None, echo=False, debug=0, buffer=False, env=None, filter_fn=None
):
self.env = env
def __init__(self, file_like=None, echo=False, debug=0, buffer=False, filter_fn=None):
self.debug = debug
self.echo = echo
self.logfile = file_like
@@ -789,11 +764,10 @@ def background_reader(reader, echo_writer, _kill):
reader.close()
self._active = True
with replace_environment(self.env):
self._thread = Thread(
target=background_reader, args=(self.reader, self.echo_writer, self._kill)
)
self._thread.start()
self._thread = Thread(
target=background_reader, args=(self.reader, self.echo_writer, self._kill)
)
self._thread.start()
return self
def __exit__(self, exc_type, exc_val, exc_tb):
@@ -918,7 +892,7 @@ def _writer_daemon(
try:
if stdin_file.read(1) == "v":
echo = not echo
except IOError as e:
except OSError as e:
# If SIGTTIN is ignored, the system gives EIO
# to let the caller know the read failed b/c it
# was in the bg. Ignore that too.
@@ -1013,7 +987,7 @@ def wrapped(*args, **kwargs):
while True:
try:
return function(*args, **kwargs)
except IOError as e:
except OSError as e:
if e.errno == errno.EINTR:
continue
raise

View File

@@ -10,7 +10,7 @@
import spack.util.git
#: PEP440 canonical <major>.<minor>.<micro>.<devN> string
__version__ = "1.0.0-alpha.3"
__version__ = "1.0.0.dev0"
spack_version = __version__

View File

@@ -1356,14 +1356,8 @@ def _test_detection_by_executable(pkgs, debug_log, error_cls):
def _compare_extra_attribute(_expected, _detected, *, _spec):
result = []
# Check items are of the same type
if not isinstance(_detected, type(_expected)):
_summary = f'{pkg_name}: error when trying to detect "{_expected}"'
_details = [f"{_detected} was detected instead"]
return [error_cls(summary=_summary, details=_details)]
# If they are string expected is a regex
if isinstance(_expected, str):
if isinstance(_expected, str) and isinstance(_detected, str):
try:
_regex = re.compile(_expected)
except re.error:
@@ -1379,7 +1373,7 @@ def _compare_extra_attribute(_expected, _detected, *, _spec):
_details = [f"{_detected} does not match the regex"]
return [error_cls(summary=_summary, details=_details)]
if isinstance(_expected, dict):
elif isinstance(_expected, dict) and isinstance(_detected, dict):
_not_detected = set(_expected.keys()) - set(_detected.keys())
if _not_detected:
_summary = f"{pkg_name}: cannot detect some attributes for spec {_spec}"
@@ -1394,6 +1388,10 @@ def _compare_extra_attribute(_expected, _detected, *, _spec):
result.extend(
_compare_extra_attribute(_expected[_key], _detected[_key], _spec=_spec)
)
else:
_summary = f'{pkg_name}: error when trying to detect "{_expected}"'
_details = [f"{_detected} was detected instead"]
return [error_cls(summary=_summary, details=_details)]
return result

View File

@@ -5,6 +5,7 @@
import codecs
import collections
import concurrent.futures
import contextlib
import copy
import hashlib
import io
@@ -23,7 +24,7 @@
import urllib.request
import warnings
from contextlib import closing
from typing import IO, Dict, Iterable, List, NamedTuple, Optional, Set, Tuple, Union
from typing import IO, Callable, Dict, Iterable, List, NamedTuple, Optional, Set, Tuple, Union
import llnl.util.filesystem as fsys
import llnl.util.lang
@@ -91,6 +92,9 @@
CURRENT_BUILD_CACHE_LAYOUT_VERSION = 2
INDEX_HASH_FILE = "index.json.hash"
class BuildCacheDatabase(spack_db.Database):
"""A database for binary buildcaches.
@@ -502,7 +506,7 @@ def _fetch_and_cache_index(self, mirror_url, cache_entry={}):
scheme = urllib.parse.urlparse(mirror_url).scheme
if scheme != "oci" and not web_util.url_exists(
url_util.join(mirror_url, BUILD_CACHE_RELATIVE_PATH, "index.json")
url_util.join(mirror_url, BUILD_CACHE_RELATIVE_PATH, spack_db.INDEX_JSON_FILE)
):
return False
@@ -625,14 +629,7 @@ def tarball_directory_name(spec):
Return name of the tarball directory according to the convention
<os>-<architecture>/<compiler>/<package>-<version>/
"""
if spec.original_spec_format() < 5:
compiler = spec.annotations.compiler_node_attribute
assert compiler is not None, "a compiler spec is expected"
return spec.format_path(
f"{spec.architecture}/{compiler.name}-{compiler.version}/{spec.name}-{spec.version}"
)
return spec.format_path(f"{spec.architecture.platform}/{spec.name}-{spec.version}")
return spec.format_path("{architecture}/{compiler.name}-{compiler.version}/{name}-{version}")
def tarball_name(spec, ext):
@@ -640,17 +637,9 @@ def tarball_name(spec, ext):
Return the name of the tarfile according to the convention
<os>-<architecture>-<package>-<dag_hash><ext>
"""
if spec.original_spec_format() < 5:
compiler = spec.annotations.compiler_node_attribute
assert compiler is not None, "a compiler spec is expected"
spec_formatted = (
f"{spec.architecture}-{compiler.name}-{compiler.version}-{spec.name}"
f"-{spec.version}-{spec.dag_hash()}"
)
else:
spec_formatted = (
f"{spec.architecture.platform}-{spec.name}-{spec.version}-{spec.dag_hash()}"
)
spec_formatted = spec.format_path(
"{architecture}-{compiler.name}-{compiler.version}-{name}-{version}-{hash}"
)
return f"{spec_formatted}{ext}"
@@ -684,19 +673,24 @@ def sign_specfile(key: str, specfile_path: str) -> str:
def _read_specs_and_push_index(
file_list, read_method, cache_prefix, db: BuildCacheDatabase, temp_dir, concurrency
file_list: List[str],
read_method: Callable,
cache_prefix: str,
db: BuildCacheDatabase,
temp_dir: str,
concurrency: int,
):
"""Read all the specs listed in the provided list, using thread given thread parallelism,
generate the index, and push it to the mirror.
Args:
file_list (list(str)): List of urls or file paths pointing at spec files to read
file_list: List of urls or file paths pointing at spec files to read
read_method: A function taking a single argument, either a url or a file path,
and which reads the spec file at that location, and returns the spec.
cache_prefix (str): prefix of the build cache on s3 where index should be pushed.
cache_prefix: prefix of the build cache on s3 where index should be pushed.
db: A spack database used for adding specs and then writing the index.
temp_dir (str): Location to write index.json and hash for pushing
concurrency (int): Number of parallel processes to use when fetching
temp_dir: Location to write index.json and hash for pushing
concurrency: Number of parallel processes to use when fetching
"""
for file in file_list:
contents = read_method(file)
@@ -714,7 +708,7 @@ def _read_specs_and_push_index(
# Now generate the index, compute its hash, and push the two files to
# the mirror.
index_json_path = os.path.join(temp_dir, "index.json")
index_json_path = os.path.join(temp_dir, spack_db.INDEX_JSON_FILE)
with open(index_json_path, "w", encoding="utf-8") as f:
db._write_to_file(f)
@@ -724,14 +718,14 @@ def _read_specs_and_push_index(
index_hash = compute_hash(index_string)
# Write the hash out to a local file
index_hash_path = os.path.join(temp_dir, "index.json.hash")
index_hash_path = os.path.join(temp_dir, INDEX_HASH_FILE)
with open(index_hash_path, "w", encoding="utf-8") as f:
f.write(index_hash)
# Push the index itself
web_util.push_to_url(
index_json_path,
url_util.join(cache_prefix, "index.json"),
url_util.join(cache_prefix, spack_db.INDEX_JSON_FILE),
keep_original=False,
extra_args={"ContentType": "application/json", "CacheControl": "no-cache"},
)
@@ -739,7 +733,7 @@ def _read_specs_and_push_index(
# Push the hash
web_util.push_to_url(
index_hash_path,
url_util.join(cache_prefix, "index.json.hash"),
url_util.join(cache_prefix, INDEX_HASH_FILE),
keep_original=False,
extra_args={"ContentType": "text/plain", "CacheControl": "no-cache"},
)
@@ -808,7 +802,7 @@ def url_read_method(url):
try:
_, _, spec_file = web_util.read_from_url(url)
contents = codecs.getreader("utf-8")(spec_file).read()
except web_util.SpackWebError as e:
except (web_util.SpackWebError, OSError) as e:
tty.error(f"Error reading specfile: {url}: {e}")
return contents
@@ -876,9 +870,12 @@ def _url_generate_package_index(url: str, tmpdir: str, concurrency: int = 32):
tty.debug(f"Retrieving spec descriptor files from {url} to build index")
db = BuildCacheDatabase(tmpdir)
db._write()
try:
_read_specs_and_push_index(file_list, read_fn, url, db, db.database_directory, concurrency)
_read_specs_and_push_index(
file_list, read_fn, url, db, str(db.database_directory), concurrency
)
except Exception as e:
raise GenerateIndexError(f"Encountered problem pushing package index to {url}: {e}") from e
@@ -1792,7 +1789,7 @@ def _oci_update_index(
db.mark(spec, "in_buildcache", True)
# Create the index.json file
index_json_path = os.path.join(tmpdir, "index.json")
index_json_path = os.path.join(tmpdir, spack_db.INDEX_JSON_FILE)
with open(index_json_path, "w", encoding="utf-8") as f:
db._write_to_file(f)
@@ -2013,7 +2010,7 @@ def fetch_url_to_mirror(url):
# Download the config = spec.json and the relevant tarball
try:
manifest = json.loads(response.read())
manifest = json.load(response)
spec_digest = spack.oci.image.Digest.from_string(manifest["config"]["digest"])
tarball_digest = spack.oci.image.Digest.from_string(
manifest["layers"][-1]["digest"]
@@ -2140,10 +2137,9 @@ def fetch_url_to_mirror(url):
def dedupe_hardlinks_if_necessary(root, buildinfo):
"""Updates a buildinfo dict for old archives that did
not dedupe hardlinks. De-duping hardlinks is necessary
when relocating files in parallel and in-place. This
means we must preserve inodes when relocating."""
"""Updates a buildinfo dict for old archives that did not dedupe hardlinks. De-duping hardlinks
is necessary when relocating files in parallel and in-place. This means we must preserve inodes
when relocating."""
# New archives don't need this.
if buildinfo.get("hardlinks_deduped", False):
@@ -2172,69 +2168,47 @@ def dedupe_hardlinks_if_necessary(root, buildinfo):
buildinfo[key] = new_list
def relocate_package(spec):
"""
Relocate the given package
"""
workdir = str(spec.prefix)
buildinfo = read_buildinfo_file(workdir)
new_layout_root = str(spack.store.STORE.layout.root)
new_prefix = str(spec.prefix)
new_rel_prefix = str(os.path.relpath(new_prefix, new_layout_root))
new_spack_prefix = str(spack.paths.prefix)
old_sbang_install_path = None
if "sbang_install_path" in buildinfo:
old_sbang_install_path = str(buildinfo["sbang_install_path"])
def relocate_package(spec: spack.spec.Spec) -> None:
"""Relocate binaries and text files in the given spec prefix, based on its buildinfo file."""
spec_prefix = str(spec.prefix)
buildinfo = read_buildinfo_file(spec_prefix)
old_layout_root = str(buildinfo["buildpath"])
old_spack_prefix = str(buildinfo.get("spackprefix"))
old_rel_prefix = buildinfo.get("relative_prefix")
old_prefix = os.path.join(old_layout_root, old_rel_prefix)
# Warn about old style tarballs created with the now removed --rel flag.
# Warn about old style tarballs created with the --rel flag (removed in Spack v0.20)
if buildinfo.get("relative_rpaths", False):
tty.warn(
f"Tarball for {spec} uses relative rpaths, " "which can cause library loading issues."
f"Tarball for {spec} uses relative rpaths, which can cause library loading issues."
)
# In the past prefix_to_hash was the default and externals were not dropped, so prefixes
# were not unique.
# In Spack 0.19 and older prefix_to_hash was the default and externals were not dropped, so
# prefixes were not unique.
if "hash_to_prefix" in buildinfo:
hash_to_old_prefix = buildinfo["hash_to_prefix"]
elif "prefix_to_hash" in buildinfo:
hash_to_old_prefix = dict((v, k) for (k, v) in buildinfo["prefix_to_hash"].items())
hash_to_old_prefix = {v: k for (k, v) in buildinfo["prefix_to_hash"].items()}
else:
hash_to_old_prefix = dict()
raise NewLayoutException(
"Package tarball was created from an install prefix with a different directory layout "
"and an older buildcache create implementation. It cannot be relocated."
)
if old_rel_prefix != new_rel_prefix and not hash_to_old_prefix:
msg = "Package tarball was created from an install "
msg += "prefix with a different directory layout and an older "
msg += "buildcache create implementation. It cannot be relocated."
raise NewLayoutException(msg)
prefix_to_prefix: Dict[str, str] = {}
# Spurious replacements (e.g. sbang) will cause issues with binaries
# For example, the new sbang can be longer than the old one.
# Hence 2 dictionaries are maintained here.
prefix_to_prefix_text = collections.OrderedDict()
prefix_to_prefix_bin = collections.OrderedDict()
if "sbang_install_path" in buildinfo:
old_sbang_install_path = str(buildinfo["sbang_install_path"])
prefix_to_prefix[old_sbang_install_path] = spack.hooks.sbang.sbang_install_path()
if old_sbang_install_path:
install_path = spack.hooks.sbang.sbang_install_path()
prefix_to_prefix_text[old_sbang_install_path] = install_path
# First match specific prefix paths. Possibly the *local* install prefix of some dependency is
# in an upstream, so we cannot assume the original spack store root can be mapped uniformly to
# the new spack store root.
# First match specific prefix paths. Possibly the *local* install prefix
# of some dependency is in an upstream, so we cannot assume the original
# spack store root can be mapped uniformly to the new spack store root.
#
# If the spec is spliced, we need to handle the simultaneous mapping
# from the old install_tree to the new install_tree and from the build_spec
# to the spliced spec.
# Because foo.build_spec is foo for any non-spliced spec, we can simplify
# by checking for spliced-in nodes by checking for nodes not in the build_spec
# without any explicit check for whether the spec is spliced.
# An analog in this algorithm is any spec that shares a name or provides the same virtuals
# in the context of the relevant root spec. This ensures that the analog for a spec s
# is the spec that s replaced when we spliced.
# If the spec is spliced, we need to handle the simultaneous mapping from the old install_tree
# to the new install_tree and from the build_spec to the spliced spec. Because foo.build_spec
# is foo for any non-spliced spec, we can simplify by checking for spliced-in nodes by checking
# for nodes not in the build_spec without any explicit check for whether the spec is spliced.
# An analog in this algorithm is any spec that shares a name or provides the same virtuals in
# the context of the relevant root spec. This ensures that the analog for a spec s is the spec
# that s replaced when we spliced.
relocation_specs = specs_to_relocate(spec)
build_spec_ids = set(id(s) for s in spec.build_spec.traverse(deptype=dt.ALL & ~dt.BUILD))
for s in relocation_specs:
@@ -2254,72 +2228,66 @@ def relocate_package(spec):
lookup_dag_hash = analog.dag_hash()
if lookup_dag_hash in hash_to_old_prefix:
old_dep_prefix = hash_to_old_prefix[lookup_dag_hash]
prefix_to_prefix_bin[old_dep_prefix] = str(s.prefix)
prefix_to_prefix_text[old_dep_prefix] = str(s.prefix)
prefix_to_prefix[old_dep_prefix] = str(s.prefix)
# Only then add the generic fallback of install prefix -> install prefix.
prefix_to_prefix_text[old_prefix] = new_prefix
prefix_to_prefix_bin[old_prefix] = new_prefix
prefix_to_prefix_text[old_layout_root] = new_layout_root
prefix_to_prefix_bin[old_layout_root] = new_layout_root
prefix_to_prefix[old_layout_root] = str(spack.store.STORE.layout.root)
# This is vestigial code for the *old* location of sbang. Previously,
# sbang was a bash script, and it lived in the spack prefix. It is
# now a POSIX script that lives in the install prefix. Old packages
# will have the old sbang location in their shebangs.
orig_sbang = "#!/bin/bash {0}/bin/sbang".format(old_spack_prefix)
new_sbang = spack.hooks.sbang.sbang_shebang_line()
prefix_to_prefix_text[orig_sbang] = new_sbang
# Delete identity mappings from prefix_to_prefix
prefix_to_prefix = {k: v for k, v in prefix_to_prefix.items() if k != v}
tty.debug("Relocating package from", "%s to %s." % (old_layout_root, new_layout_root))
# If there's nothing to relocate, we're done.
if not prefix_to_prefix:
return
for old, new in prefix_to_prefix.items():
tty.debug(f"Relocating: {old} => {new}.")
# Old archives may have hardlinks repeated.
dedupe_hardlinks_if_necessary(workdir, buildinfo)
dedupe_hardlinks_if_necessary(spec_prefix, buildinfo)
# Text files containing the prefix text
text_names = [os.path.join(workdir, f) for f in buildinfo["relocate_textfiles"]]
textfiles = [os.path.join(spec_prefix, f) for f in buildinfo["relocate_textfiles"]]
binaries = [os.path.join(spec_prefix, f) for f in buildinfo.get("relocate_binaries")]
links = [os.path.join(spec_prefix, f) for f in buildinfo.get("relocate_links", [])]
# If we are not installing back to the same install tree do the relocation
if old_prefix != new_prefix:
files_to_relocate = [
os.path.join(workdir, filename) for filename in buildinfo.get("relocate_binaries")
]
# If the buildcache was not created with relativized rpaths
# do the relocation of path in binaries
platform = spack.platforms.by_name(spec.platform)
if "macho" in platform.binary_formats:
relocate.relocate_macho_binaries(files_to_relocate, prefix_to_prefix_bin)
elif "elf" in platform.binary_formats:
# The new ELF dynamic section relocation logic only handles absolute to
# absolute relocation.
relocate.relocate_elf_binaries(files_to_relocate, prefix_to_prefix_bin)
platform = spack.platforms.by_name(spec.platform)
if "macho" in platform.binary_formats:
relocate.relocate_macho_binaries(binaries, prefix_to_prefix)
elif "elf" in platform.binary_formats:
relocate.relocate_elf_binaries(binaries, prefix_to_prefix)
# Relocate links to the new install prefix
links = [os.path.join(workdir, f) for f in buildinfo.get("relocate_links", [])]
relocate.relocate_links(links, prefix_to_prefix_bin)
relocate.relocate_links(links, prefix_to_prefix)
relocate.relocate_text(textfiles, prefix_to_prefix)
changed_files = relocate.relocate_text_bin(binaries, prefix_to_prefix)
# For all buildcaches
# relocate the install prefixes in text files including dependencies
relocate.relocate_text(text_names, prefix_to_prefix_text)
# Add ad-hoc signatures to patched macho files when on macOS.
if "macho" in platform.binary_formats and sys.platform == "darwin":
codesign = which("codesign")
if not codesign:
return
for binary in changed_files:
# preserve the original inode by running codesign on a copy
with fsys.edit_in_place_through_temporary_file(binary) as tmp_binary:
codesign("-fs-", tmp_binary)
# relocate the install prefixes in binary files including dependencies
changed_files = relocate.relocate_text_bin(files_to_relocate, prefix_to_prefix_bin)
install_manifest = os.path.join(
spec.prefix,
spack.store.STORE.layout.metadata_dir,
spack.store.STORE.layout.manifest_file_name,
)
if not os.path.exists(install_manifest):
spec_id = spec.format("{name}/{hash:7}")
tty.warn("No manifest file in tarball for spec %s" % spec_id)
# Add ad-hoc signatures to patched macho files when on macOS.
if "macho" in platform.binary_formats and sys.platform == "darwin":
codesign = which("codesign")
if not codesign:
return
for binary in changed_files:
# preserve the original inode by running codesign on a copy
with fsys.edit_in_place_through_temporary_file(binary) as tmp_binary:
codesign("-fs-", tmp_binary)
# overwrite old metadata with new
if spec.spliced:
# rewrite spec on disk
spack.store.STORE.layout.write_spec(spec, spack.store.STORE.layout.spec_file_path(spec))
# If we are installing back to the same location
# relocate the sbang location if the spack directory changed
else:
if old_spack_prefix != new_spack_prefix:
relocate.relocate_text(text_names, prefix_to_prefix_text)
# de-cache the install manifest
with contextlib.suppress(FileNotFoundError):
os.unlink(install_manifest)
def _extract_inner_tarball(spec, filename, extract_to, signature_required: bool, remote_checksum):
@@ -2487,15 +2455,6 @@ def extract_tarball(spec, download_result, force=False, timer=timer.NULL_TIMER):
except Exception as e:
shutil.rmtree(spec.prefix, ignore_errors=True)
raise e
else:
manifest_file = os.path.join(
spec.prefix,
spack.store.STORE.layout.metadata_dir,
spack.store.STORE.layout.manifest_file_name,
)
if not os.path.exists(manifest_file):
spec_id = spec.format("{name}/{hash:7}")
tty.warn("No manifest file in tarball for spec %s" % spec_id)
finally:
if tmpdir:
shutil.rmtree(tmpdir, ignore_errors=True)
@@ -2600,10 +2559,6 @@ def install_root_node(
tty.msg('Installing "{0}" from a buildcache'.format(spec.format()))
extract_tarball(spec, download_result, force)
spec.package.windows_establish_runtime_linkage()
if spec.spliced: # overwrite old metadata with new
spack.store.STORE.layout.write_spec(
spec, spack.store.STORE.layout.spec_file_path(spec)
)
spack.hooks.post_install(spec, False)
spack.store.STORE.db.add(spec, allow_missing=allow_missing)
@@ -2641,11 +2596,14 @@ def try_direct_fetch(spec, mirrors=None):
)
try:
_, _, fs = web_util.read_from_url(buildcache_fetch_url_signed_json)
specfile_contents = codecs.getreader("utf-8")(fs).read()
specfile_is_signed = True
except web_util.SpackWebError as e1:
except (web_util.SpackWebError, OSError) as e1:
try:
_, _, fs = web_util.read_from_url(buildcache_fetch_url_json)
except web_util.SpackWebError as e2:
specfile_contents = codecs.getreader("utf-8")(fs).read()
specfile_is_signed = False
except (web_util.SpackWebError, OSError) as e2:
tty.debug(
f"Did not find {specfile_name} on {buildcache_fetch_url_signed_json}",
e1,
@@ -2655,7 +2613,6 @@ def try_direct_fetch(spec, mirrors=None):
f"Did not find {specfile_name} on {buildcache_fetch_url_json}", e2, level=2
)
continue
specfile_contents = codecs.getreader("utf-8")(fs).read()
# read the spec from the build cache file. All specs in build caches
# are concrete (as they are built) so we need to mark this spec
@@ -2749,8 +2706,9 @@ def get_keys(install=False, trust=False, force=False, mirrors=None):
try:
_, _, json_file = web_util.read_from_url(keys_index)
json_index = sjson.load(codecs.getreader("utf-8")(json_file))
except web_util.SpackWebError as url_err:
json_index = sjson.load(json_file)
except (web_util.SpackWebError, OSError, ValueError) as url_err:
# TODO: avoid repeated request
if web_util.url_exists(keys_index):
tty.error(
f"Unable to find public keys in {url_util.format(fetch_url)},"
@@ -2997,14 +2955,14 @@ def __init__(self, url, local_hash, urlopen=web_util.urlopen):
def get_remote_hash(self):
# Failure to fetch index.json.hash is not fatal
url_index_hash = url_util.join(self.url, BUILD_CACHE_RELATIVE_PATH, "index.json.hash")
url_index_hash = url_util.join(self.url, BUILD_CACHE_RELATIVE_PATH, INDEX_HASH_FILE)
try:
response = self.urlopen(urllib.request.Request(url_index_hash, headers=self.headers))
except (TimeoutError, urllib.error.URLError):
remote_hash = response.read(64)
except OSError:
return None
# Validate the hash
remote_hash = response.read(64)
if not re.match(rb"[a-f\d]{64}$", remote_hash):
return None
return remote_hash.decode("utf-8")
@@ -3018,17 +2976,17 @@ def conditional_fetch(self) -> FetchIndexResult:
return FetchIndexResult(etag=None, hash=None, data=None, fresh=True)
# Otherwise, download index.json
url_index = url_util.join(self.url, BUILD_CACHE_RELATIVE_PATH, "index.json")
url_index = url_util.join(self.url, BUILD_CACHE_RELATIVE_PATH, spack_db.INDEX_JSON_FILE)
try:
response = self.urlopen(urllib.request.Request(url_index, headers=self.headers))
except (TimeoutError, urllib.error.URLError) as e:
raise FetchIndexError("Could not fetch index from {}".format(url_index), e) from e
except OSError as e:
raise FetchIndexError(f"Could not fetch index from {url_index}", e) from e
try:
result = codecs.getreader("utf-8")(response).read()
except ValueError as e:
raise FetchIndexError("Remote index {} is invalid".format(url_index), e) from e
except (ValueError, OSError) as e:
raise FetchIndexError(f"Remote index {url_index} is invalid") from e
computed_hash = compute_hash(result)
@@ -3062,7 +3020,7 @@ def __init__(self, url, etag, urlopen=web_util.urlopen):
def conditional_fetch(self) -> FetchIndexResult:
# Just do a conditional fetch immediately
url = url_util.join(self.url, BUILD_CACHE_RELATIVE_PATH, "index.json")
url = url_util.join(self.url, BUILD_CACHE_RELATIVE_PATH, spack_db.INDEX_JSON_FILE)
headers = {"User-Agent": web_util.SPACK_USER_AGENT, "If-None-Match": f'"{self.etag}"'}
try:
@@ -3072,12 +3030,12 @@ def conditional_fetch(self) -> FetchIndexResult:
# Not modified; that means fresh.
return FetchIndexResult(etag=None, hash=None, data=None, fresh=True)
raise FetchIndexError(f"Could not fetch index {url}", e) from e
except (TimeoutError, urllib.error.URLError) as e:
except OSError as e: # URLError, socket.timeout, etc.
raise FetchIndexError(f"Could not fetch index {url}", e) from e
try:
result = codecs.getreader("utf-8")(response).read()
except ValueError as e:
except (ValueError, OSError) as e:
raise FetchIndexError(f"Remote index {url} is invalid", e) from e
headers = response.headers
@@ -3109,11 +3067,11 @@ def conditional_fetch(self) -> FetchIndexResult:
headers={"Accept": "application/vnd.oci.image.manifest.v1+json"},
)
)
except (TimeoutError, urllib.error.URLError) as e:
except OSError as e:
raise FetchIndexError(f"Could not fetch manifest from {url_manifest}", e) from e
try:
manifest = json.loads(response.read())
manifest = json.load(response)
except Exception as e:
raise FetchIndexError(f"Remote index {url_manifest} is invalid", e) from e
@@ -3128,14 +3086,16 @@ def conditional_fetch(self) -> FetchIndexResult:
return FetchIndexResult(etag=None, hash=None, data=None, fresh=True)
# Otherwise fetch the blob / index.json
response = self.urlopen(
urllib.request.Request(
url=self.ref.blob_url(index_digest),
headers={"Accept": "application/vnd.oci.image.layer.v1.tar+gzip"},
try:
response = self.urlopen(
urllib.request.Request(
url=self.ref.blob_url(index_digest),
headers={"Accept": "application/vnd.oci.image.layer.v1.tar+gzip"},
)
)
)
result = codecs.getreader("utf-8")(response).read()
result = codecs.getreader("utf-8")(response).read()
except (OSError, ValueError) as e:
raise FetchIndexError(f"Remote index {url_manifest} is invalid", e) from e
# Make sure the blob we download has the advertised hash
if compute_hash(result) != index_digest.digest:

View File

@@ -5,12 +5,14 @@
import fnmatch
import glob
import importlib
import os.path
import os
import re
import sys
import sysconfig
import warnings
from typing import Dict, Optional, Sequence, Union
from typing import Optional, Sequence, Union
from typing_extensions import TypedDict
import archspec.cpu
@@ -18,13 +20,17 @@
from llnl.util import tty
import spack.platforms
import spack.spec
import spack.store
import spack.util.environment
import spack.util.executable
from .config import spec_for_current_python
QueryInfo = Dict[str, "spack.spec.Spec"]
class QueryInfo(TypedDict, total=False):
spec: spack.spec.Spec
command: spack.util.executable.Executable
def _python_import(module: str) -> bool:
@@ -211,7 +217,9 @@ def _executables_in_store(
):
spack.util.environment.path_put_first("PATH", [bin_dir])
if query_info is not None:
query_info["command"] = spack.util.executable.which(*executables, path=bin_dir)
query_info["command"] = spack.util.executable.which(
*executables, path=bin_dir, required=True
)
query_info["spec"] = concrete_spec
return True
return False
@@ -226,13 +234,12 @@ def _root_spec(spec_str: str) -> str:
# Add a compiler and platform requirement to the root spec.
platform = str(spack.platforms.host())
# FIXME (compiler as nodes): recover the compiler for source bootstrapping
# if platform == "darwin":
# spec_str += " %apple-clang"
if platform == "windows":
if platform == "darwin":
spec_str += " %apple-clang"
elif platform == "windows":
spec_str += " %msvc"
# elif platform == "linux":
# spec_str += " %gcc"
elif platform == "linux":
spec_str += " %gcc"
elif platform == "freebsd":
spec_str += " %clang"
spec_str += f" platform={platform}"

View File

@@ -15,13 +15,11 @@
import archspec.cpu
import spack.compilers.config
import spack.compilers.libraries
import spack.config
import spack.compiler
import spack.compilers
import spack.platforms
import spack.spec
import spack.traverse
import spack.version
from .config import spec_for_current_python
@@ -29,9 +27,9 @@
class ClingoBootstrapConcretizer:
def __init__(self, configuration):
self.host_platform = spack.platforms.host()
self.host_os = self.host_platform.operating_system("frontend")
self.host_os = self.host_platform.default_operating_system()
self.host_target = archspec.cpu.host().family
self.host_architecture = spack.spec.ArchSpec.frontend_arch()
self.host_architecture = spack.spec.ArchSpec.default_arch()
self.host_architecture.target = str(self.host_target)
self.host_compiler = self._valid_compiler_or_raise()
self.host_python = self.python_external_spec()
@@ -40,7 +38,7 @@ def __init__(self, configuration):
self.external_cmake, self.external_bison = self._externals_from_yaml(configuration)
def _valid_compiler_or_raise(self):
def _valid_compiler_or_raise(self) -> "spack.compiler.Compiler":
if str(self.host_platform) == "linux":
compiler_name = "gcc"
elif str(self.host_platform) == "darwin":
@@ -48,30 +46,17 @@ def _valid_compiler_or_raise(self):
elif str(self.host_platform) == "windows":
compiler_name = "msvc"
elif str(self.host_platform) == "freebsd":
compiler_name = "llvm"
compiler_name = "clang"
else:
raise RuntimeError(f"Cannot bootstrap clingo from sources on {self.host_platform}")
candidates = [
x
for x in spack.compilers.config.CompilerFactory.from_packages_yaml(spack.config.CONFIG)
if x.name == compiler_name
]
candidates = spack.compilers.compilers_for_spec(
compiler_name, arch_spec=self.host_architecture
)
if not candidates:
raise RuntimeError(
f"Cannot find any version of {compiler_name} to bootstrap clingo from sources"
)
candidates.sort(key=lambda x: x.version, reverse=True)
best = candidates[0]
# Get compilers for bootstrapping from the 'builtin' repository
best.namespace = "builtin"
# If the compiler does not support C++ 14, fail with a legible error message
try:
_ = best.package.standard_flag(language="cxx", standard="14")
except RuntimeError as e:
raise RuntimeError(
"cannot find a compiler supporting C++ 14 [needed to bootstrap clingo]"
) from e
candidates.sort(key=lambda x: x.spec.version, reverse=True)
return candidates[0]
def _externals_from_yaml(
@@ -90,6 +75,9 @@ def _externals_from_yaml(
if not s.satisfies(requirements[pkg_name]):
continue
if not s.intersects(f"%{self.host_compiler.spec}"):
continue
if not s.intersects(f"arch={self.host_architecture}"):
continue
@@ -122,14 +110,11 @@ def concretize(self) -> "spack.spec.Spec":
# Tweak it to conform to the host architecture
for node in s.traverse():
node.architecture.os = str(self.host_os)
node.compiler = self.host_compiler.spec
node.architecture = self.host_architecture
if node.name == "gcc-runtime":
node.versions = self.host_compiler.versions
# Can't use re2c@3.1 with Python 3.6
if self.host_python.satisfies("@3.6"):
s["re2c"].versions.versions = [spack.version.from_string("=2.2")]
node.versions = self.host_compiler.spec.versions
for edge in spack.traverse.traverse_edges([s], cover="edges"):
if edge.spec.name == "python":
@@ -141,9 +126,6 @@ def concretize(self) -> "spack.spec.Spec":
if edge.spec.name == "cmake" and self.external_cmake:
edge.spec = self.external_cmake
if edge.spec.name == self.host_compiler.name:
edge.spec = self.host_compiler
if "libc" in edge.virtuals:
edge.spec = self.host_libc
@@ -159,12 +141,12 @@ def python_external_spec(self) -> "spack.spec.Spec":
return self._external_spec(result)
def libc_external_spec(self) -> "spack.spec.Spec":
detector = spack.compilers.libraries.CompilerPropertyDetector(self.host_compiler)
result = detector.default_libc()
result = self.host_compiler.default_libc
return self._external_spec(result)
def _external_spec(self, initial_spec) -> "spack.spec.Spec":
initial_spec.namespace = "builtin"
initial_spec.compiler = self.host_compiler.spec
initial_spec.architecture = self.host_architecture
for flag_type in spack.spec.FlagMap.valid_compiler_flags():
initial_spec.compiler_flags[flag_type] = []

View File

@@ -4,13 +4,13 @@
"""Manage configuration swapping for bootstrapping purposes"""
import contextlib
import os.path
import os
import sys
from typing import Any, Dict, Generator, MutableSequence, Sequence
from llnl.util import tty
import spack.compilers.config
import spack.compilers
import spack.config
import spack.environment
import spack.modules
@@ -141,9 +141,9 @@ def _bootstrap_config_scopes() -> Sequence["spack.config.ConfigScope"]:
def _add_compilers_if_missing() -> None:
arch = spack.spec.ArchSpec.frontend_arch()
if not spack.compilers.config.compilers_for_arch(arch):
spack.compilers.config.find_compilers()
arch = spack.spec.ArchSpec.default_arch()
if not spack.compilers.compilers_for_arch(arch):
spack.compilers.find_compilers()
@contextlib.contextmanager

View File

@@ -25,7 +25,6 @@
import functools
import json
import os
import os.path
import sys
import uuid
from typing import Any, Callable, Dict, List, Optional, Tuple
@@ -34,8 +33,10 @@
from llnl.util.lang import GroupedExceptionHandler
import spack.binary_distribution
import spack.concretize
import spack.config
import spack.detection
import spack.error
import spack.mirrors.mirror
import spack.platforms
import spack.spec
@@ -44,10 +45,17 @@
import spack.util.executable
import spack.util.path
import spack.util.spack_yaml
import spack.util.url
import spack.version
from spack.installer import PackageInstaller
from ._common import _executables_in_store, _python_import, _root_spec, _try_import_from_store
from ._common import (
QueryInfo,
_executables_in_store,
_python_import,
_root_spec,
_try_import_from_store,
)
from .clingo import ClingoBootstrapConcretizer
from .config import spack_python_interpreter, spec_for_current_python
@@ -89,8 +97,12 @@ def __init__(self, conf: ConfigDictionary) -> None:
self.name = conf["name"]
self.metadata_dir = spack.util.path.canonicalize_path(conf["metadata"])
# Promote (relative) paths to file urls
self.url = spack.mirrors.mirror.Mirror(conf["info"]["url"]).fetch_url
# Check for relative paths, and turn them into absolute paths
# root is the metadata_dir
maybe_url = conf["info"]["url"]
if spack.util.url.is_path_instead_of_url(maybe_url) and not os.path.isabs(maybe_url):
maybe_url = os.path.join(self.metadata_dir, maybe_url)
self.url = spack.mirrors.mirror.Mirror(maybe_url).fetch_url
@property
def mirror_scope(self) -> spack.config.InternalConfigScope:
@@ -134,7 +146,7 @@ class BuildcacheBootstrapper(Bootstrapper):
def __init__(self, conf) -> None:
super().__init__(conf)
self.last_search: Optional[ConfigDictionary] = None
self.last_search: Optional[QueryInfo] = None
self.config_scope_name = f"bootstrap_buildcache-{uuid.uuid4()}"
@staticmethod
@@ -211,14 +223,14 @@ def _install_and_test(
for _, pkg_hash, pkg_sha256 in item["binaries"]:
self._install_by_hash(pkg_hash, pkg_sha256, bincache_platform)
info: ConfigDictionary = {}
info: QueryInfo = {}
if test_fn(query_spec=abstract_spec, query_info=info):
self.last_search = info
return True
return False
def try_import(self, module: str, abstract_spec_str: str) -> bool:
info: ConfigDictionary
info: QueryInfo
test_fn, info = functools.partial(_try_import_from_store, module), {}
if test_fn(query_spec=abstract_spec_str, query_info=info):
return True
@@ -231,7 +243,7 @@ def try_import(self, module: str, abstract_spec_str: str) -> bool:
return self._install_and_test(abstract_spec, bincache_platform, data, test_fn)
def try_search_path(self, executables: Tuple[str], abstract_spec_str: str) -> bool:
info: ConfigDictionary
info: QueryInfo
test_fn, info = functools.partial(_executables_in_store, executables), {}
if test_fn(query_spec=abstract_spec_str, query_info=info):
self.last_search = info
@@ -249,11 +261,11 @@ class SourceBootstrapper(Bootstrapper):
def __init__(self, conf) -> None:
super().__init__(conf)
self.last_search: Optional[ConfigDictionary] = None
self.last_search: Optional[QueryInfo] = None
self.config_scope_name = f"bootstrap_source-{uuid.uuid4()}"
def try_import(self, module: str, abstract_spec_str: str) -> bool:
info: ConfigDictionary = {}
info: QueryInfo = {}
if _try_import_from_store(module, abstract_spec_str, query_info=info):
self.last_search = info
return True
@@ -270,22 +282,17 @@ def try_import(self, module: str, abstract_spec_str: str) -> bool:
bootstrapper = ClingoBootstrapConcretizer(configuration=spack.config.CONFIG)
concrete_spec = bootstrapper.concretize()
else:
concrete_spec = spack.spec.Spec(
abstract_spec = spack.spec.Spec(
abstract_spec_str + " ^" + spec_for_current_python()
)
concrete_spec.concretize()
concrete_spec = spack.concretize.concretize_one(abstract_spec)
msg = "[BOOTSTRAP MODULE {0}] Try installing '{1}' from sources"
tty.debug(msg.format(module, abstract_spec_str))
# Install the spec that should make the module importable
with spack.config.override(self.mirror_scope):
PackageInstaller(
[concrete_spec.package],
fail_fast=True,
package_use_cache=False,
dependencies_use_cache=False,
).install()
PackageInstaller([concrete_spec.package], fail_fast=True).install()
if _try_import_from_store(module, query_spec=concrete_spec, query_info=info):
self.last_search = info
@@ -293,7 +300,7 @@ def try_import(self, module: str, abstract_spec_str: str) -> bool:
return False
def try_search_path(self, executables: Tuple[str], abstract_spec_str: str) -> bool:
info: ConfigDictionary = {}
info: QueryInfo = {}
if _executables_in_store(executables, abstract_spec_str, query_info=info):
self.last_search = info
return True
@@ -304,7 +311,7 @@ def try_search_path(self, executables: Tuple[str], abstract_spec_str: str) -> bo
# might reduce compilation time by a fair amount
_add_externals_if_missing()
concrete_spec = spack.spec.Spec(abstract_spec_str).concretized()
concrete_spec = spack.concretize.concretize_one(abstract_spec_str)
msg = "[BOOTSTRAP] Try installing '{0}' from sources"
tty.debug(msg.format(abstract_spec_str))
with spack.config.override(self.mirror_scope):
@@ -321,10 +328,9 @@ def create_bootstrapper(conf: ConfigDictionary):
return _bootstrap_methods[btype](conf)
def source_is_enabled(conf: ConfigDictionary):
"""Raise ValueError if the source is not enabled for bootstrapping"""
trusted, name = spack.config.get("bootstrap:trusted"), conf["name"]
return trusted.get(name, False)
def source_is_enabled(conf: ConfigDictionary) -> bool:
"""Returns true if the source is not enabled for bootstrapping"""
return spack.config.get("bootstrap:trusted").get(conf["name"], False)
def ensure_module_importable_or_raise(module: str, abstract_spec: Optional[str] = None):
@@ -356,20 +362,21 @@ def ensure_module_importable_or_raise(module: str, abstract_spec: Optional[str]
for current_config in bootstrapping_sources():
if not source_is_enabled(current_config):
continue
with exception_handler.forward(current_config["name"], Exception):
current_bootstrapper = create_bootstrapper(current_config)
if current_bootstrapper.try_import(module, abstract_spec):
if create_bootstrapper(current_config).try_import(module, abstract_spec):
return
assert exception_handler, (
f"expected at least one exception to have been raised at this point: "
f"while bootstrapping {module}"
)
msg = f'cannot bootstrap the "{module}" Python module '
if abstract_spec:
msg += f'from spec "{abstract_spec}" '
msg += exception_handler.grouped_message(with_tracebacks=tty.is_debug())
if not exception_handler:
msg += ": no bootstrapping sources are enabled"
elif spack.error.debug or spack.error.SHOW_BACKTRACE:
msg += exception_handler.grouped_message(with_tracebacks=True)
else:
msg += exception_handler.grouped_message(with_tracebacks=False)
msg += "\nRun `spack --backtrace ...` for more detailed errors"
raise ImportError(msg)
@@ -417,6 +424,7 @@ def ensure_executables_in_path_or_raise(
current_bootstrapper.last_search["spec"],
current_bootstrapper.last_search["command"],
)
assert cmd is not None, "expected an Executable"
cmd.add_default_envmod(
spack.user_environment.environment_modifications_for_specs(
concrete_spec, set_package_py_globals=False
@@ -424,18 +432,17 @@ def ensure_executables_in_path_or_raise(
)
return cmd
assert exception_handler, (
f"expected at least one exception to have been raised at this point: "
f"while bootstrapping {executables_str}"
)
msg = f"cannot bootstrap any of the {executables_str} executables "
if abstract_spec:
msg += f'from spec "{abstract_spec}" '
if tty.is_debug():
if not exception_handler:
msg += ": no bootstrapping sources are enabled"
elif spack.error.debug or spack.error.SHOW_BACKTRACE:
msg += exception_handler.grouped_message(with_tracebacks=True)
else:
msg += exception_handler.grouped_message(with_tracebacks=False)
msg += "\nRun `spack --debug ...` for more detailed errors"
msg += "\nRun `spack --backtrace ...` for more detailed errors"
raise RuntimeError(msg)

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