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v1.0.0-alp
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hs/fix/tar
| Author | SHA1 | Date | |
|---|---|---|---|
|
|
8b020067f4 |
18
.github/workflows/build-containers.yml
vendored
18
.github/workflows/build-containers.yml
vendored
@@ -40,17 +40,17 @@ jobs:
|
||||
# 1: Platforms to build for
|
||||
# 2: Base image (e.g. ubuntu:22.04)
|
||||
dockerfile: [[amazon-linux, 'linux/amd64,linux/arm64', 'amazonlinux:2'],
|
||||
[centos-stream9, 'linux/amd64,linux/arm64', 'centos:stream9'],
|
||||
[leap15, 'linux/amd64,linux/arm64', 'opensuse/leap:15'],
|
||||
[ubuntu-focal, 'linux/amd64,linux/arm64', 'ubuntu:20.04'],
|
||||
[ubuntu-jammy, 'linux/amd64,linux/arm64', 'ubuntu:22.04'],
|
||||
[ubuntu-noble, 'linux/amd64,linux/arm64', 'ubuntu:24.04'],
|
||||
[almalinux8, 'linux/amd64,linux/arm64', 'almalinux:8'],
|
||||
[almalinux9, 'linux/amd64,linux/arm64', 'almalinux:9'],
|
||||
[centos-stream9, 'linux/amd64,linux/arm64,linux/ppc64le', 'centos:stream9'],
|
||||
[leap15, 'linux/amd64,linux/arm64,linux/ppc64le', 'opensuse/leap:15'],
|
||||
[ubuntu-focal, 'linux/amd64,linux/arm64,linux/ppc64le', 'ubuntu:20.04'],
|
||||
[ubuntu-jammy, 'linux/amd64,linux/arm64,linux/ppc64le', 'ubuntu:22.04'],
|
||||
[ubuntu-noble, 'linux/amd64,linux/arm64,linux/ppc64le', 'ubuntu:24.04'],
|
||||
[almalinux8, 'linux/amd64,linux/arm64,linux/ppc64le', 'almalinux:8'],
|
||||
[almalinux9, 'linux/amd64,linux/arm64,linux/ppc64le', 'almalinux:9'],
|
||||
[rockylinux8, 'linux/amd64,linux/arm64', 'rockylinux:8'],
|
||||
[rockylinux9, 'linux/amd64,linux/arm64', 'rockylinux:9'],
|
||||
[fedora39, 'linux/amd64,linux/arm64', 'fedora:39'],
|
||||
[fedora40, 'linux/amd64,linux/arm64', 'fedora:40']]
|
||||
[fedora39, 'linux/amd64,linux/arm64,linux/ppc64le', 'fedora:39'],
|
||||
[fedora40, 'linux/amd64,linux/arm64,linux/ppc64le', 'fedora:40']]
|
||||
name: Build ${{ matrix.dockerfile[0] }}
|
||||
if: github.repository == 'spack/spack'
|
||||
steps:
|
||||
|
||||
4
.github/workflows/ci.yaml
vendored
4
.github/workflows/ci.yaml
vendored
@@ -81,10 +81,6 @@ jobs:
|
||||
with:
|
||||
with_coverage: ${{ needs.changes.outputs.core }}
|
||||
|
||||
import-check:
|
||||
needs: [ changes ]
|
||||
uses: ./.github/workflows/import-check.yaml
|
||||
|
||||
all-prechecks:
|
||||
needs: [ prechecks ]
|
||||
if: ${{ always() }}
|
||||
|
||||
1
.github/workflows/coverage.yml
vendored
1
.github/workflows/coverage.yml
vendored
@@ -33,4 +33,3 @@ jobs:
|
||||
with:
|
||||
verbose: true
|
||||
fail_ci_if_error: false
|
||||
token: ${{ secrets.CODECOV_TOKEN }}
|
||||
|
||||
49
.github/workflows/import-check.yaml
vendored
49
.github/workflows/import-check.yaml
vendored
@@ -1,49 +0,0 @@
|
||||
name: import-check
|
||||
|
||||
on:
|
||||
workflow_call:
|
||||
|
||||
jobs:
|
||||
# Check we don't make the situation with circular imports worse
|
||||
import-check:
|
||||
runs-on: ubuntu-latest
|
||||
steps:
|
||||
- uses: julia-actions/setup-julia@v2
|
||||
with:
|
||||
version: '1.10'
|
||||
- uses: julia-actions/cache@v2
|
||||
|
||||
# PR: use the base of the PR as the old commit
|
||||
- name: Checkout PR base commit
|
||||
if: github.event_name == 'pull_request'
|
||||
uses: actions/checkout@11bd71901bbe5b1630ceea73d27597364c9af683
|
||||
with:
|
||||
ref: ${{ github.event.pull_request.base.sha }}
|
||||
path: old
|
||||
# not a PR: use the previous commit as the old commit
|
||||
- name: Checkout previous commit
|
||||
if: github.event_name != 'pull_request'
|
||||
uses: actions/checkout@11bd71901bbe5b1630ceea73d27597364c9af683
|
||||
with:
|
||||
fetch-depth: 2
|
||||
path: old
|
||||
- name: Checkout previous commit
|
||||
if: github.event_name != 'pull_request'
|
||||
run: git -C old reset --hard HEAD^
|
||||
|
||||
- name: Checkout new commit
|
||||
uses: actions/checkout@11bd71901bbe5b1630ceea73d27597364c9af683
|
||||
with:
|
||||
path: new
|
||||
- name: Install circular import checker
|
||||
uses: actions/checkout@11bd71901bbe5b1630ceea73d27597364c9af683
|
||||
with:
|
||||
repository: haampie/circular-import-fighter
|
||||
ref: 4cdb0bf15f04ab6b49041d5ef1bfd9644cce7f33
|
||||
path: circular-import-fighter
|
||||
- name: Install dependencies
|
||||
working-directory: circular-import-fighter
|
||||
run: make -j dependencies
|
||||
- name: Circular import check
|
||||
working-directory: circular-import-fighter
|
||||
run: make -j compare "SPACK_ROOT=../old ../new"
|
||||
@@ -1,7 +1,7 @@
|
||||
black==25.1.0
|
||||
black==24.10.0
|
||||
clingo==5.7.1
|
||||
flake8==7.1.2
|
||||
isort==6.0.0
|
||||
mypy==1.15.0
|
||||
flake8==7.1.1
|
||||
isort==5.13.2
|
||||
mypy==1.11.2
|
||||
types-six==1.17.0.20241205
|
||||
vermin==1.6.0
|
||||
|
||||
60
.github/workflows/valid-style.yml
vendored
60
.github/workflows/valid-style.yml
vendored
@@ -86,6 +86,66 @@ jobs:
|
||||
spack -d bootstrap now --dev
|
||||
spack -d style -t black
|
||||
spack unit-test -V
|
||||
# Check we don't make the situation with circular imports worse
|
||||
import-check:
|
||||
runs-on: ubuntu-latest
|
||||
steps:
|
||||
- uses: julia-actions/setup-julia@v2
|
||||
with:
|
||||
version: '1.10'
|
||||
- uses: julia-actions/cache@v2
|
||||
|
||||
# PR: use the base of the PR as the old commit
|
||||
- name: Checkout PR base commit
|
||||
if: github.event_name == 'pull_request'
|
||||
uses: actions/checkout@11bd71901bbe5b1630ceea73d27597364c9af683
|
||||
with:
|
||||
ref: ${{ github.event.pull_request.base.sha }}
|
||||
path: old
|
||||
# not a PR: use the previous commit as the old commit
|
||||
- name: Checkout previous commit
|
||||
if: github.event_name != 'pull_request'
|
||||
uses: actions/checkout@11bd71901bbe5b1630ceea73d27597364c9af683
|
||||
with:
|
||||
fetch-depth: 2
|
||||
path: old
|
||||
- name: Checkout previous commit
|
||||
if: github.event_name != 'pull_request'
|
||||
run: git -C old reset --hard HEAD^
|
||||
|
||||
- name: Checkout new commit
|
||||
uses: actions/checkout@11bd71901bbe5b1630ceea73d27597364c9af683
|
||||
with:
|
||||
path: new
|
||||
- name: Install circular import checker
|
||||
uses: actions/checkout@11bd71901bbe5b1630ceea73d27597364c9af683
|
||||
with:
|
||||
repository: haampie/circular-import-fighter
|
||||
ref: b5d6ce9be35f602cca7d5a6aa0259fca10639cca
|
||||
path: circular-import-fighter
|
||||
- name: Install dependencies
|
||||
working-directory: circular-import-fighter
|
||||
run: make -j dependencies
|
||||
- name: Problematic imports before
|
||||
working-directory: circular-import-fighter
|
||||
run: make SPACK_ROOT=../old SUFFIX=.old
|
||||
- name: Problematic imports after
|
||||
working-directory: circular-import-fighter
|
||||
run: make SPACK_ROOT=../new SUFFIX=.new
|
||||
- name: Compare import cycles
|
||||
working-directory: circular-import-fighter
|
||||
run: |
|
||||
edges_before="$(head -n1 solution.old)"
|
||||
edges_after="$(head -n1 solution.new)"
|
||||
if [ "$edges_after" -gt "$edges_before" ]; then
|
||||
printf '\033[1;31mImport check failed: %s imports need to be deleted, ' "$edges_after"
|
||||
printf 'previously this was %s\033[0m\n' "$edges_before"
|
||||
printf 'Compare \033[1;97m"Problematic imports before"\033[0m and '
|
||||
printf '\033[1;97m"Problematic imports after"\033[0m.\n'
|
||||
exit 1
|
||||
else
|
||||
printf '\033[1;32mImport check passed: %s <= %s\033[0m\n' "$edges_after" "$edges_before"
|
||||
fi
|
||||
|
||||
# Further style checks from pylint
|
||||
pylint:
|
||||
|
||||
@@ -43,28 +43,6 @@ concretizer:
|
||||
# (e.g. py-setuptools, cmake etc.)
|
||||
# "full" (experimental): allows separation of the entire build-tool stack (e.g. the entire "cmake" subDAG)
|
||||
strategy: minimal
|
||||
# Maximum number of duplicates in a DAG, when using a strategy that allows duplicates. "default" is the
|
||||
# number used if there isn't a more specific alternative
|
||||
max_dupes:
|
||||
default: 1
|
||||
# Virtuals
|
||||
c: 2
|
||||
cxx: 2
|
||||
fortran: 1
|
||||
# Regular packages
|
||||
cmake: 2
|
||||
gmake: 2
|
||||
python: 2
|
||||
python-venv: 2
|
||||
py-cython: 2
|
||||
py-flit-core: 2
|
||||
py-pip: 2
|
||||
py-setuptools: 2
|
||||
py-wheel: 2
|
||||
xcb-proto: 2
|
||||
# Compilers
|
||||
gcc: 2
|
||||
llvm: 2
|
||||
# Option to specify compatibility between operating systems for reuse of compilers and packages
|
||||
# Specified as a key: [list] where the key is the os that is being targeted, and the list contains the OS's
|
||||
# it can reuse. Note this is a directional compatibility so mutual compatibility between two OS's
|
||||
@@ -85,7 +63,3 @@ concretizer:
|
||||
# Setting this to false yields unreproducible results, so we advise to use that value only
|
||||
# for debugging purposes (e.g. check which constraints can help Spack concretize faster).
|
||||
error_on_timeout: true
|
||||
|
||||
# Static analysis may reduce the concretization time by generating smaller ASP problems, in
|
||||
# cases where there are requirements that prevent part of the search space to be explored.
|
||||
static_analysis: false
|
||||
|
||||
@@ -19,7 +19,7 @@ config:
|
||||
install_tree:
|
||||
root: $spack/opt/spack
|
||||
projections:
|
||||
all: "{architecture.platform}-{architecture.target}/{name}-{version}-{hash}"
|
||||
all: "{architecture}/{compiler.name}-{compiler.version}/{name}-{version}-{hash}"
|
||||
# install_tree can include an optional padded length (int or boolean)
|
||||
# default is False (do not pad)
|
||||
# if padded_length is True, Spack will pad as close to the system max path
|
||||
|
||||
@@ -1,2 +0,0 @@
|
||||
concretizer:
|
||||
static_analysis: true
|
||||
@@ -15,11 +15,12 @@
|
||||
# -------------------------------------------------------------------------
|
||||
packages:
|
||||
all:
|
||||
compiler:
|
||||
- apple-clang
|
||||
- clang
|
||||
- gcc
|
||||
providers:
|
||||
c: [apple-clang, llvm, gcc]
|
||||
cxx: [apple-clang, llvm, gcc]
|
||||
elf: [libelf]
|
||||
fortran: [gcc]
|
||||
fuse: [macfuse]
|
||||
gl: [apple-gl]
|
||||
glu: [apple-glu]
|
||||
@@ -49,9 +50,3 @@ packages:
|
||||
# although the version number used here isn't critical
|
||||
- spec: apple-libuuid@1353.100.2
|
||||
prefix: /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk
|
||||
c:
|
||||
require: apple-clang
|
||||
cxx:
|
||||
require: apple-clang
|
||||
fortran:
|
||||
require: gcc
|
||||
|
||||
@@ -15,18 +15,19 @@
|
||||
# -------------------------------------------------------------------------
|
||||
packages:
|
||||
all:
|
||||
compiler: [gcc, clang, oneapi, xl, nag, fj, aocc]
|
||||
providers:
|
||||
awk: [gawk]
|
||||
armci: [armcimpi]
|
||||
blas: [openblas, amdblis]
|
||||
c: [gcc, llvm, intel-oneapi-compilers, xl, aocc]
|
||||
cxx: [gcc, llvm, intel-oneapi-compilers, xl, aocc]
|
||||
c: [gcc]
|
||||
cxx: [gcc]
|
||||
D: [ldc]
|
||||
daal: [intel-oneapi-daal]
|
||||
elf: [elfutils]
|
||||
fftw-api: [fftw, amdfftw]
|
||||
flame: [libflame, amdlibflame]
|
||||
fortran: [gcc, llvm]
|
||||
fortran: [gcc]
|
||||
fortran-rt: [gcc-runtime, intel-oneapi-runtime]
|
||||
fuse: [libfuse]
|
||||
gl: [glx, osmesa]
|
||||
|
||||
@@ -1,5 +1,5 @@
|
||||
config:
|
||||
locks: false
|
||||
build_stage::
|
||||
- '$user_cache_path/stage'
|
||||
- '$spack/.staging'
|
||||
stage_name: '{name}-{version}-{hash:7}'
|
||||
|
||||
@@ -15,8 +15,8 @@
|
||||
# -------------------------------------------------------------------------
|
||||
packages:
|
||||
all:
|
||||
compiler:
|
||||
- msvc
|
||||
providers:
|
||||
c : [msvc]
|
||||
cxx: [msvc]
|
||||
mpi: [msmpi]
|
||||
gl: [wgl]
|
||||
|
||||
@@ -1761,24 +1761,19 @@ Verifying installations
|
||||
The ``spack verify`` command can be used to verify the validity of
|
||||
Spack-installed packages any time after installation.
|
||||
|
||||
|
||||
^^^^^^^^^^^^^^^^^^^^^^^^^
|
||||
``spack verify manifest``
|
||||
^^^^^^^^^^^^^^^^^^^^^^^^^
|
||||
|
||||
At installation time, Spack creates a manifest of every file in the
|
||||
installation prefix. For links, Spack tracks the mode, ownership, and
|
||||
destination. For directories, Spack tracks the mode, and
|
||||
ownership. For files, Spack tracks the mode, ownership, modification
|
||||
time, hash, and size. The ``spack verify manifest`` command will check,
|
||||
for every file in each package, whether any of those attributes have
|
||||
changed. It will also check for newly added files or deleted files from
|
||||
the installation prefix. Spack can either check all installed packages
|
||||
time, hash, and size. The Spack verify command will check, for every
|
||||
file in each package, whether any of those attributes have changed. It
|
||||
will also check for newly added files or deleted files from the
|
||||
installation prefix. Spack can either check all installed packages
|
||||
using the `-a,--all` or accept specs listed on the command line to
|
||||
verify.
|
||||
|
||||
The ``spack verify manifest`` command can also verify for individual files
|
||||
that they haven't been altered since installation time. If the given file
|
||||
The ``spack verify`` command can also verify for individual files that
|
||||
they haven't been altered since installation time. If the given file
|
||||
is not in a Spack installation prefix, Spack will report that it is
|
||||
not owned by any package. To check individual files instead of specs,
|
||||
use the ``-f,--files`` option.
|
||||
@@ -1793,22 +1788,6 @@ check only local packages (as opposed to those used transparently from
|
||||
``upstream`` spack instances) and the ``-j,--json`` option to output
|
||||
machine-readable json data for any errors.
|
||||
|
||||
^^^^^^^^^^^^^^^^^^^^^^^^^^
|
||||
``spack verify libraries``
|
||||
^^^^^^^^^^^^^^^^^^^^^^^^^^
|
||||
|
||||
The ``spack verify libraries`` command can be used to verify that packages
|
||||
do not have accidental system dependencies. This command scans the install
|
||||
prefixes of packages for executables and shared libraries, and resolves
|
||||
their needed libraries in their RPATHs. When needed libraries cannot be
|
||||
located, an error is reported. This typically indicates that a package
|
||||
was linked against a system library, instead of a library provided by
|
||||
a Spack package.
|
||||
|
||||
This verification can also be enabled as a post-install hook by setting
|
||||
``config:shared_linking:missing_library_policy`` to ``error`` or ``warn``
|
||||
in :ref:`config.yaml <config-yaml>`.
|
||||
|
||||
-----------------------
|
||||
Filesystem requirements
|
||||
-----------------------
|
||||
|
||||
@@ -272,9 +272,9 @@ often lists dependencies and the flags needed to locate them. The
|
||||
"environment variables" section lists environment variables that the
|
||||
build system uses to pass flags to the compiler and linker.
|
||||
|
||||
^^^^^^^^^^^^^^^^^^^^^^^^^
|
||||
Adding flags to configure
|
||||
^^^^^^^^^^^^^^^^^^^^^^^^^
|
||||
^^^^^^^^^^^^^^^^^^^^^^^^^^
|
||||
Addings flags to configure
|
||||
^^^^^^^^^^^^^^^^^^^^^^^^^^
|
||||
|
||||
For most of the flags you encounter, you will want a variant to
|
||||
optionally enable/disable them. You can then optionally pass these
|
||||
@@ -285,7 +285,7 @@ function like so:
|
||||
|
||||
def configure_args(self):
|
||||
args = []
|
||||
...
|
||||
|
||||
if self.spec.satisfies("+mpi"):
|
||||
args.append("--enable-mpi")
|
||||
else:
|
||||
@@ -299,10 +299,7 @@ Alternatively, you can use the :ref:`enable_or_disable <autotools_enable_or_dis
|
||||
.. code-block:: python
|
||||
|
||||
def configure_args(self):
|
||||
args = []
|
||||
...
|
||||
args.extend(self.enable_or_disable("mpi"))
|
||||
return args
|
||||
return [self.enable_or_disable("mpi")]
|
||||
|
||||
|
||||
Note that we are explicitly disabling MPI support if it is not
|
||||
@@ -347,14 +344,7 @@ typically used to enable or disable some feature within the package.
|
||||
default=False,
|
||||
description="Memchecker support for debugging [degrades performance]"
|
||||
)
|
||||
...
|
||||
|
||||
def configure_args(self):
|
||||
args = []
|
||||
...
|
||||
args.extend(self.enable_or_disable("memchecker"))
|
||||
|
||||
return args
|
||||
config_args.extend(self.enable_or_disable("memchecker"))
|
||||
|
||||
In this example, specifying the variant ``+memchecker`` will generate
|
||||
the following configuration options:
|
||||
|
||||
@@ -223,10 +223,6 @@ def setup(sphinx):
|
||||
("py:class", "spack.compiler.CompilerCache"),
|
||||
# TypeVar that is not handled correctly
|
||||
("py:class", "llnl.util.lang.T"),
|
||||
("py:class", "llnl.util.lang.KT"),
|
||||
("py:class", "llnl.util.lang.VT"),
|
||||
("py:obj", "llnl.util.lang.KT"),
|
||||
("py:obj", "llnl.util.lang.VT"),
|
||||
]
|
||||
|
||||
# The reST default role (used for this markup: `text`) to use for all documents.
|
||||
|
||||
@@ -125,8 +125,6 @@ are stored in ``$spack/var/spack/cache``. These are stored indefinitely
|
||||
by default. Can be purged with :ref:`spack clean --downloads
|
||||
<cmd-spack-clean>`.
|
||||
|
||||
.. _Misc Cache:
|
||||
|
||||
--------------------
|
||||
``misc_cache``
|
||||
--------------------
|
||||
@@ -336,52 +334,3 @@ create a new alias called ``inst`` that will always call ``install -v``:
|
||||
|
||||
aliases:
|
||||
inst: install -v
|
||||
|
||||
-------------------------------
|
||||
``concretization_cache:enable``
|
||||
-------------------------------
|
||||
|
||||
When set to ``true``, Spack will utilize a cache of solver outputs from
|
||||
successful concretization runs. When enabled, Spack will check the concretization
|
||||
cache prior to running the solver. If a previous request to solve a given
|
||||
problem is present in the cache, Spack will load the concrete specs and other
|
||||
solver data from the cache rather than running the solver. Specs not previously
|
||||
concretized will be added to the cache on a successful solve. The cache additionally
|
||||
holds solver statistics, so commands like ``spack solve`` will still return information
|
||||
about the run that produced a given solver result.
|
||||
|
||||
This cache is a subcache of the :ref:`Misc Cache` and as such will be cleaned when the Misc
|
||||
Cache is cleaned.
|
||||
|
||||
When ``false`` or ommitted, all concretization requests will be performed from scatch
|
||||
|
||||
----------------------------
|
||||
``concretization_cache:url``
|
||||
----------------------------
|
||||
|
||||
Path to the location where Spack will root the concretization cache. Currently this only supports
|
||||
paths on the local filesystem.
|
||||
|
||||
Default location is under the :ref:`Misc Cache` at: ``$misc_cache/concretization``
|
||||
|
||||
------------------------------------
|
||||
``concretization_cache:entry_limit``
|
||||
------------------------------------
|
||||
|
||||
Sets a limit on the number of concretization results that Spack will cache. The limit is evaluated
|
||||
after each concretization run; if Spack has stored more results than the limit allows, the
|
||||
oldest concretization results are pruned until 10% of the limit has been removed.
|
||||
|
||||
Setting this value to 0 disables the automatic pruning. It is expected users will be
|
||||
responsible for maintaining this cache.
|
||||
|
||||
-----------------------------------
|
||||
``concretization_cache:size_limit``
|
||||
-----------------------------------
|
||||
|
||||
Sets a limit on the size of the concretization cache in bytes. The limit is evaluated
|
||||
after each concretization run; if Spack has stored more results than the limit allows, the
|
||||
oldest concretization results are pruned until 10% of the limit has been removed.
|
||||
|
||||
Setting this value to 0 disables the automatic pruning. It is expected users will be
|
||||
responsible for maintaining this cache.
|
||||
|
||||
@@ -361,6 +361,7 @@ and the tags associated with the class of runners to build on.
|
||||
* ``.linux_neoverse_n1``
|
||||
* ``.linux_neoverse_v1``
|
||||
* ``.linux_neoverse_v2``
|
||||
* ``.linux_power``
|
||||
* ``.linux_skylake``
|
||||
* ``.linux_x86_64``
|
||||
* ``.linux_x86_64_v4``
|
||||
|
||||
@@ -112,19 +112,6 @@ the original but may concretize differently in the presence of different
|
||||
explicit or default configuration settings (e.g., a different version of
|
||||
Spack or for a different user account).
|
||||
|
||||
Environments created from a manifest will copy any included configs
|
||||
from relative paths inside the environment. Relative paths from
|
||||
outside the environment will cause errors, and absolute paths will be
|
||||
kept absolute. For example, if ``spack.yaml`` includes:
|
||||
|
||||
.. code-block:: yaml
|
||||
|
||||
spack:
|
||||
include: [./config.yaml]
|
||||
|
||||
then the created environment will have its own copy of the file
|
||||
``config.yaml`` copied from the location in the original environment.
|
||||
|
||||
Create an environment from a ``spack.lock`` file using:
|
||||
|
||||
.. code-block:: console
|
||||
@@ -173,7 +160,7 @@ accepts. If an environment already exists then spack will simply activate it
|
||||
and ignore the create-specific flags.
|
||||
|
||||
.. code-block:: console
|
||||
|
||||
|
||||
$ spack env activate --create -p myenv
|
||||
# ...
|
||||
# [creates if myenv does not exist yet]
|
||||
@@ -437,8 +424,8 @@ Developing Packages in a Spack Environment
|
||||
|
||||
The ``spack develop`` command allows one to develop Spack packages in
|
||||
an environment. It requires a spec containing a concrete version, and
|
||||
will configure Spack to install the package from local source.
|
||||
If a version is not provided from the command line interface then spack
|
||||
will configure Spack to install the package from local source.
|
||||
If a version is not provided from the command line interface then spack
|
||||
will automatically pick the highest version the package has defined.
|
||||
This means any infinity versions (``develop``, ``main``, ``stable``) will be
|
||||
preferred in this selection process.
|
||||
@@ -448,9 +435,9 @@ set, and Spack will ensure the package and its dependents are rebuilt
|
||||
any time the environment is installed if the package's local source
|
||||
code has been modified. Spack's native implementation to check for modifications
|
||||
is to check if ``mtime`` is newer than the installation.
|
||||
A custom check can be created by overriding the ``detect_dev_src_change`` method
|
||||
in your package class. This is particularly useful for projects using custom spack repo's
|
||||
to drive development and want to optimize performance.
|
||||
A custom check can be created by overriding the ``detect_dev_src_change`` method
|
||||
in your package class. This is particularly useful for projects using custom spack repo's
|
||||
to drive development and want to optimize performance.
|
||||
|
||||
Spack ensures that all instances of a
|
||||
developed package in the environment are concretized to match the
|
||||
@@ -466,7 +453,7 @@ Further development on ``foo`` can be tested by re-installing the environment,
|
||||
and eventually committed and pushed to the upstream git repo.
|
||||
|
||||
If the package being developed supports out-of-source builds then users can use the
|
||||
``--build_directory`` flag to control the location and name of the build directory.
|
||||
``--build_directory`` flag to control the location and name of the build directory.
|
||||
This is a shortcut to set the ``package_attributes:build_directory`` in the
|
||||
``packages`` configuration (see :ref:`assigning-package-attributes`).
|
||||
The supplied location will become the build-directory for that package in all future builds.
|
||||
|
||||
@@ -330,7 +330,7 @@ that ``--tests`` is passed to ``spack ci rebuild`` as part of the
|
||||
- spack --version
|
||||
- cd ${SPACK_CONCRETE_ENV_DIR}
|
||||
- spack env activate --without-view .
|
||||
- spack config add "config:install_tree:projections:${SPACK_JOB_SPEC_PKG_NAME}:'morepadding/{architecture.platform}-{architecture.target}/{name}-{version}-{hash}'"
|
||||
- spack config add "config:install_tree:projections:${SPACK_JOB_SPEC_PKG_NAME}:'morepadding/{architecture}/{compiler.name}-{compiler.version}/{name}-{version}-{hash}'"
|
||||
- mkdir -p ${SPACK_ARTIFACTS_ROOT}/user_data
|
||||
- if [[ -r /mnt/key/intermediate_ci_signing_key.gpg ]]; then spack gpg trust /mnt/key/intermediate_ci_signing_key.gpg; fi
|
||||
- if [[ -r /mnt/key/spack_public_key.gpg ]]; then spack gpg trust /mnt/key/spack_public_key.gpg; fi
|
||||
@@ -820,69 +820,6 @@ presence of a ``SPACK_CDASH_AUTH_TOKEN`` environment variable during the
|
||||
build group on CDash called "Release Testing" (that group will be created if
|
||||
it didn't already exist).
|
||||
|
||||
.. _ci_artifacts:
|
||||
|
||||
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
|
||||
CI Artifacts Directory Layout
|
||||
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
|
||||
|
||||
When running the CI build using the command ``spack ci rebuild`` a number of directories are created for
|
||||
storing data generated during the CI job. The default root directory for artifacts is ``job_scratch_root``.
|
||||
This can be overridden by passing the argument ``--artifacts-root`` to the ``spack ci generate`` command
|
||||
or by setting the ``SPACK_ARTIFACTS_ROOT`` environment variable in the build job scripts.
|
||||
|
||||
The top level directories under the artifact root are ``concrete_environment``, ``logs``, ``reproduction``,
|
||||
``tests``, and ``user_data``. Spack does not restrict what is written to any of these directories nor does
|
||||
it require user specified files be written to any specific directory.
|
||||
|
||||
------------------------
|
||||
``concrete_environment``
|
||||
------------------------
|
||||
|
||||
The directory ``concrete_environment`` is used to communicate the ci generate processed ``spack.yaml`` and
|
||||
the concrete ``spack.lock`` for the CI environment.
|
||||
|
||||
--------
|
||||
``logs``
|
||||
--------
|
||||
|
||||
The directory ``logs`` contains the spack build log, ``spack-build-out.txt``, and the spack build environment
|
||||
modification file, ``spack-build-mod-env.txt``. Additionally all files specified by the packages ``Builder``
|
||||
property ``archive_files`` are also copied here (ie. ``CMakeCache.txt`` in ``CMakeBuilder``).
|
||||
|
||||
----------------
|
||||
``reproduction``
|
||||
----------------
|
||||
|
||||
The directory ``reproduction`` is used to store the files needed by the ``spack reproduce-build`` command.
|
||||
This includes ``repro.json``, copies of all of the files in ``concrete_environment``, the concrete spec
|
||||
JSON file for the current spec being built, and all of the files written in the artifacts root directory.
|
||||
|
||||
The ``repro.json`` file is not versioned and is only designed to work with the version of spack CI was run with.
|
||||
An example of what a ``repro.json`` may look like is here.
|
||||
|
||||
.. code:: json
|
||||
|
||||
{
|
||||
"job_name": "adios2@2.9.2 /feaevuj %gcc@11.4.0 arch=linux-ubuntu20.04-x86_64_v3 E4S ROCm External",
|
||||
"job_spec_json": "adios2.json",
|
||||
"ci_project_dir": "/builds/spack/spack"
|
||||
}
|
||||
|
||||
---------
|
||||
``tests``
|
||||
---------
|
||||
|
||||
The directory ``tests`` is used to store output from running ``spack test <job spec>``. This may or may not have
|
||||
data in it depending on the package that was built and the availability of tests.
|
||||
|
||||
-------------
|
||||
``user_data``
|
||||
-------------
|
||||
|
||||
The directory ``user_data`` is used to store everything else that shouldn't be copied to the ``reproduction`` direcotory.
|
||||
Users may use this to store additional logs or metrics or other types of files generated by the build job.
|
||||
|
||||
-------------------------------------
|
||||
Using a custom spack in your pipeline
|
||||
-------------------------------------
|
||||
|
||||
@@ -1,4 +1,4 @@
|
||||
sphinx==8.2.1
|
||||
sphinx==8.1.3
|
||||
sphinxcontrib-programoutput==0.18
|
||||
sphinx_design==0.6.1
|
||||
sphinx-rtd-theme==3.0.2
|
||||
@@ -7,7 +7,7 @@ docutils==0.21.2
|
||||
pygments==2.19.1
|
||||
urllib3==2.3.0
|
||||
pytest==8.3.4
|
||||
isort==6.0.0
|
||||
black==25.1.0
|
||||
flake8==7.1.2
|
||||
isort==5.13.2
|
||||
black==24.10.0
|
||||
flake8==7.1.1
|
||||
mypy==1.11.1
|
||||
|
||||
1
lib/spack/env/aocc/clang
vendored
Symbolic link
1
lib/spack/env/aocc/clang
vendored
Symbolic link
@@ -0,0 +1 @@
|
||||
../cc
|
||||
1
lib/spack/env/aocc/clang++
vendored
Symbolic link
1
lib/spack/env/aocc/clang++
vendored
Symbolic link
@@ -0,0 +1 @@
|
||||
../cpp
|
||||
1
lib/spack/env/aocc/flang
vendored
Symbolic link
1
lib/spack/env/aocc/flang
vendored
Symbolic link
@@ -0,0 +1 @@
|
||||
../fc
|
||||
1
lib/spack/env/arm/armclang
vendored
Symbolic link
1
lib/spack/env/arm/armclang
vendored
Symbolic link
@@ -0,0 +1 @@
|
||||
../cc
|
||||
1
lib/spack/env/arm/armclang++
vendored
Symbolic link
1
lib/spack/env/arm/armclang++
vendored
Symbolic link
@@ -0,0 +1 @@
|
||||
../cc
|
||||
1
lib/spack/env/arm/armflang
vendored
Symbolic link
1
lib/spack/env/arm/armflang
vendored
Symbolic link
@@ -0,0 +1 @@
|
||||
../cc
|
||||
1
lib/spack/env/c++
vendored
Symbolic link
1
lib/spack/env/c++
vendored
Symbolic link
@@ -0,0 +1 @@
|
||||
cc
|
||||
1
lib/spack/env/c89
vendored
Symbolic link
1
lib/spack/env/c89
vendored
Symbolic link
@@ -0,0 +1 @@
|
||||
cc
|
||||
1
lib/spack/env/c99
vendored
Symbolic link
1
lib/spack/env/c99
vendored
Symbolic link
@@ -0,0 +1 @@
|
||||
cc
|
||||
1
lib/spack/env/case-insensitive/CC
vendored
Symbolic link
1
lib/spack/env/case-insensitive/CC
vendored
Symbolic link
@@ -0,0 +1 @@
|
||||
../cc
|
||||
@@ -39,6 +39,12 @@ readonly params="\
|
||||
SPACK_ENV_PATH
|
||||
SPACK_DEBUG_LOG_DIR
|
||||
SPACK_DEBUG_LOG_ID
|
||||
SPACK_COMPILER_SPEC
|
||||
SPACK_CC_RPATH_ARG
|
||||
SPACK_CXX_RPATH_ARG
|
||||
SPACK_F77_RPATH_ARG
|
||||
SPACK_FC_RPATH_ARG
|
||||
SPACK_LINKER_ARG
|
||||
SPACK_SHORT_SPEC
|
||||
SPACK_SYSTEM_DIRS
|
||||
SPACK_MANAGED_DIRS"
|
||||
@@ -339,9 +345,6 @@ case "$command" in
|
||||
;;
|
||||
ld|ld.gold|ld.lld)
|
||||
mode=ld
|
||||
if [ -z "$SPACK_CC_RPATH_ARG" ]; then
|
||||
comp="CXX"
|
||||
fi
|
||||
;;
|
||||
*)
|
||||
die "Unknown compiler: $command"
|
||||
@@ -396,12 +399,10 @@ fi
|
||||
#
|
||||
dtags_to_add="${SPACK_DTAGS_TO_ADD}"
|
||||
dtags_to_strip="${SPACK_DTAGS_TO_STRIP}"
|
||||
|
||||
linker_arg="ERROR: LINKER ARG WAS NOT SET, MAYBE THE PACKAGE DOES NOT DEPEND ON ${comp}?"
|
||||
eval "linker_arg=\${SPACK_${comp}_LINKER_ARG:?${linker_arg}}"
|
||||
linker_arg="${SPACK_LINKER_ARG}"
|
||||
|
||||
# Set up rpath variable according to language.
|
||||
rpath="ERROR: RPATH ARG WAS NOT SET, MAYBE THE PACKAGE DOES NOT DEPEND ON ${comp}?"
|
||||
rpath="ERROR: RPATH ARG WAS NOT SET"
|
||||
eval "rpath=\${SPACK_${comp}_RPATH_ARG:?${rpath}}"
|
||||
|
||||
# Dump the mode and exit if the command is dump-mode.
|
||||
@@ -410,6 +411,13 @@ if [ "$SPACK_TEST_COMMAND" = "dump-mode" ]; then
|
||||
exit
|
||||
fi
|
||||
|
||||
# If, say, SPACK_CC is set but SPACK_FC is not, we want to know. Compilers do not
|
||||
# *have* to set up Fortran executables, so we need to tell the user when a build is
|
||||
# about to attempt to use them unsuccessfully.
|
||||
if [ -z "$command" ]; then
|
||||
die "Compiler '$SPACK_COMPILER_SPEC' does not have a $language compiler configured."
|
||||
fi
|
||||
|
||||
#
|
||||
# Filter '.' and Spack environment directories out of PATH so that
|
||||
# this script doesn't just call itself
|
||||
@@ -779,17 +787,15 @@ case "$mode" in
|
||||
C)
|
||||
extend spack_flags_list SPACK_ALWAYS_CFLAGS
|
||||
extend spack_flags_list SPACK_CFLAGS
|
||||
preextend flags_list SPACK_TARGET_ARGS_CC
|
||||
;;
|
||||
CXX)
|
||||
extend spack_flags_list SPACK_ALWAYS_CXXFLAGS
|
||||
extend spack_flags_list SPACK_CXXFLAGS
|
||||
preextend flags_list SPACK_TARGET_ARGS_CXX
|
||||
;;
|
||||
F)
|
||||
preextend flags_list SPACK_TARGET_ARGS_FORTRAN
|
||||
;;
|
||||
esac
|
||||
|
||||
# prepend target args
|
||||
preextend flags_list SPACK_TARGET_ARGS
|
||||
;;
|
||||
esac
|
||||
|
||||
1
lib/spack/env/cce/case-insensitive/CC
vendored
Symbolic link
1
lib/spack/env/cce/case-insensitive/CC
vendored
Symbolic link
@@ -0,0 +1 @@
|
||||
../../cc
|
||||
1
lib/spack/env/cce/case-insensitive/crayCC
vendored
Symbolic link
1
lib/spack/env/cce/case-insensitive/crayCC
vendored
Symbolic link
@@ -0,0 +1 @@
|
||||
../../cc
|
||||
1
lib/spack/env/cce/cc
vendored
Symbolic link
1
lib/spack/env/cce/cc
vendored
Symbolic link
@@ -0,0 +1 @@
|
||||
../cc
|
||||
1
lib/spack/env/cce/craycc
vendored
Symbolic link
1
lib/spack/env/cce/craycc
vendored
Symbolic link
@@ -0,0 +1 @@
|
||||
../cc
|
||||
1
lib/spack/env/cce/crayftn
vendored
Symbolic link
1
lib/spack/env/cce/crayftn
vendored
Symbolic link
@@ -0,0 +1 @@
|
||||
../cc
|
||||
1
lib/spack/env/cce/ftn
vendored
Symbolic link
1
lib/spack/env/cce/ftn
vendored
Symbolic link
@@ -0,0 +1 @@
|
||||
../cc
|
||||
1
lib/spack/env/clang/clang
vendored
Symbolic link
1
lib/spack/env/clang/clang
vendored
Symbolic link
@@ -0,0 +1 @@
|
||||
../cc
|
||||
1
lib/spack/env/clang/clang++
vendored
Symbolic link
1
lib/spack/env/clang/clang++
vendored
Symbolic link
@@ -0,0 +1 @@
|
||||
../cc
|
||||
1
lib/spack/env/clang/flang
vendored
Symbolic link
1
lib/spack/env/clang/flang
vendored
Symbolic link
@@ -0,0 +1 @@
|
||||
../cc
|
||||
1
lib/spack/env/clang/gfortran
vendored
Symbolic link
1
lib/spack/env/clang/gfortran
vendored
Symbolic link
@@ -0,0 +1 @@
|
||||
../cc
|
||||
1
lib/spack/env/cpp
vendored
Symbolic link
1
lib/spack/env/cpp
vendored
Symbolic link
@@ -0,0 +1 @@
|
||||
cc
|
||||
1
lib/spack/env/f77
vendored
Symbolic link
1
lib/spack/env/f77
vendored
Symbolic link
@@ -0,0 +1 @@
|
||||
cc
|
||||
1
lib/spack/env/f90
vendored
Symbolic link
1
lib/spack/env/f90
vendored
Symbolic link
@@ -0,0 +1 @@
|
||||
cc
|
||||
1
lib/spack/env/f95
vendored
Symbolic link
1
lib/spack/env/f95
vendored
Symbolic link
@@ -0,0 +1 @@
|
||||
cc
|
||||
1
lib/spack/env/fc
vendored
Symbolic link
1
lib/spack/env/fc
vendored
Symbolic link
@@ -0,0 +1 @@
|
||||
cc
|
||||
1
lib/spack/env/fj/case-insensitive/FCC
vendored
Symbolic link
1
lib/spack/env/fj/case-insensitive/FCC
vendored
Symbolic link
@@ -0,0 +1 @@
|
||||
../../cc
|
||||
1
lib/spack/env/fj/fcc
vendored
Symbolic link
1
lib/spack/env/fj/fcc
vendored
Symbolic link
@@ -0,0 +1 @@
|
||||
../cc
|
||||
1
lib/spack/env/fj/frt
vendored
Symbolic link
1
lib/spack/env/fj/frt
vendored
Symbolic link
@@ -0,0 +1 @@
|
||||
../cc
|
||||
1
lib/spack/env/ftn
vendored
Symbolic link
1
lib/spack/env/ftn
vendored
Symbolic link
@@ -0,0 +1 @@
|
||||
cc
|
||||
1
lib/spack/env/gcc/g++
vendored
Symbolic link
1
lib/spack/env/gcc/g++
vendored
Symbolic link
@@ -0,0 +1 @@
|
||||
../cc
|
||||
1
lib/spack/env/gcc/gcc
vendored
Symbolic link
1
lib/spack/env/gcc/gcc
vendored
Symbolic link
@@ -0,0 +1 @@
|
||||
../cc
|
||||
1
lib/spack/env/gcc/gfortran
vendored
Symbolic link
1
lib/spack/env/gcc/gfortran
vendored
Symbolic link
@@ -0,0 +1 @@
|
||||
../cc
|
||||
1
lib/spack/env/intel/icc
vendored
Symbolic link
1
lib/spack/env/intel/icc
vendored
Symbolic link
@@ -0,0 +1 @@
|
||||
../cc
|
||||
1
lib/spack/env/intel/icpc
vendored
Symbolic link
1
lib/spack/env/intel/icpc
vendored
Symbolic link
@@ -0,0 +1 @@
|
||||
../cc
|
||||
1
lib/spack/env/intel/ifort
vendored
Symbolic link
1
lib/spack/env/intel/ifort
vendored
Symbolic link
@@ -0,0 +1 @@
|
||||
../cc
|
||||
1
lib/spack/env/ld
vendored
Symbolic link
1
lib/spack/env/ld
vendored
Symbolic link
@@ -0,0 +1 @@
|
||||
cc
|
||||
1
lib/spack/env/ld.gold
vendored
Symbolic link
1
lib/spack/env/ld.gold
vendored
Symbolic link
@@ -0,0 +1 @@
|
||||
cc
|
||||
1
lib/spack/env/ld.lld
vendored
Symbolic link
1
lib/spack/env/ld.lld
vendored
Symbolic link
@@ -0,0 +1 @@
|
||||
cc
|
||||
1
lib/spack/env/nag/nagfor
vendored
Symbolic link
1
lib/spack/env/nag/nagfor
vendored
Symbolic link
@@ -0,0 +1 @@
|
||||
../cc
|
||||
1
lib/spack/env/nvhpc/nvc
vendored
Symbolic link
1
lib/spack/env/nvhpc/nvc
vendored
Symbolic link
@@ -0,0 +1 @@
|
||||
../cc
|
||||
1
lib/spack/env/nvhpc/nvc++
vendored
Symbolic link
1
lib/spack/env/nvhpc/nvc++
vendored
Symbolic link
@@ -0,0 +1 @@
|
||||
../cc
|
||||
1
lib/spack/env/nvhpc/nvfortran
vendored
Symbolic link
1
lib/spack/env/nvhpc/nvfortran
vendored
Symbolic link
@@ -0,0 +1 @@
|
||||
../cc
|
||||
1
lib/spack/env/oneapi/dpcpp
vendored
Symbolic link
1
lib/spack/env/oneapi/dpcpp
vendored
Symbolic link
@@ -0,0 +1 @@
|
||||
../cc
|
||||
1
lib/spack/env/oneapi/icpx
vendored
Symbolic link
1
lib/spack/env/oneapi/icpx
vendored
Symbolic link
@@ -0,0 +1 @@
|
||||
../cc
|
||||
1
lib/spack/env/oneapi/icx
vendored
Symbolic link
1
lib/spack/env/oneapi/icx
vendored
Symbolic link
@@ -0,0 +1 @@
|
||||
../cc
|
||||
1
lib/spack/env/oneapi/ifx
vendored
Symbolic link
1
lib/spack/env/oneapi/ifx
vendored
Symbolic link
@@ -0,0 +1 @@
|
||||
../cc
|
||||
1
lib/spack/env/pgi/pgc++
vendored
Symbolic link
1
lib/spack/env/pgi/pgc++
vendored
Symbolic link
@@ -0,0 +1 @@
|
||||
../cc
|
||||
1
lib/spack/env/pgi/pgcc
vendored
Symbolic link
1
lib/spack/env/pgi/pgcc
vendored
Symbolic link
@@ -0,0 +1 @@
|
||||
../cc
|
||||
1
lib/spack/env/pgi/pgfortran
vendored
Symbolic link
1
lib/spack/env/pgi/pgfortran
vendored
Symbolic link
@@ -0,0 +1 @@
|
||||
../cc
|
||||
1
lib/spack/env/rocmcc/amdclang
vendored
Symbolic link
1
lib/spack/env/rocmcc/amdclang
vendored
Symbolic link
@@ -0,0 +1 @@
|
||||
../cc
|
||||
1
lib/spack/env/rocmcc/amdclang++
vendored
Symbolic link
1
lib/spack/env/rocmcc/amdclang++
vendored
Symbolic link
@@ -0,0 +1 @@
|
||||
../cpp
|
||||
1
lib/spack/env/rocmcc/amdflang
vendored
Symbolic link
1
lib/spack/env/rocmcc/amdflang
vendored
Symbolic link
@@ -0,0 +1 @@
|
||||
../fc
|
||||
1
lib/spack/env/xl/xlc
vendored
Symbolic link
1
lib/spack/env/xl/xlc
vendored
Symbolic link
@@ -0,0 +1 @@
|
||||
../cc
|
||||
1
lib/spack/env/xl/xlc++
vendored
Symbolic link
1
lib/spack/env/xl/xlc++
vendored
Symbolic link
@@ -0,0 +1 @@
|
||||
../cc
|
||||
1
lib/spack/env/xl/xlf
vendored
Symbolic link
1
lib/spack/env/xl/xlf
vendored
Symbolic link
@@ -0,0 +1 @@
|
||||
../cc
|
||||
1
lib/spack/env/xl/xlf90
vendored
Symbolic link
1
lib/spack/env/xl/xlf90
vendored
Symbolic link
@@ -0,0 +1 @@
|
||||
../cc
|
||||
1
lib/spack/env/xl_r/xlc++_r
vendored
Symbolic link
1
lib/spack/env/xl_r/xlc++_r
vendored
Symbolic link
@@ -0,0 +1 @@
|
||||
../cc
|
||||
1
lib/spack/env/xl_r/xlc_r
vendored
Symbolic link
1
lib/spack/env/xl_r/xlc_r
vendored
Symbolic link
@@ -0,0 +1 @@
|
||||
../cc
|
||||
1
lib/spack/env/xl_r/xlf90_r
vendored
Symbolic link
1
lib/spack/env/xl_r/xlf90_r
vendored
Symbolic link
@@ -0,0 +1 @@
|
||||
../cc
|
||||
1
lib/spack/env/xl_r/xlf_r
vendored
Symbolic link
1
lib/spack/env/xl_r/xlf_r
vendored
Symbolic link
@@ -0,0 +1 @@
|
||||
../cc
|
||||
@@ -7,7 +7,6 @@
|
||||
import fnmatch
|
||||
import glob
|
||||
import hashlib
|
||||
import io
|
||||
import itertools
|
||||
import numbers
|
||||
import os
|
||||
@@ -21,7 +20,6 @@
|
||||
from contextlib import contextmanager
|
||||
from itertools import accumulate
|
||||
from typing import (
|
||||
IO,
|
||||
Callable,
|
||||
Deque,
|
||||
Dict,
|
||||
@@ -670,7 +668,7 @@ def copy(src, dest, _permissions=False):
|
||||
_permissions (bool): for internal use only
|
||||
|
||||
Raises:
|
||||
OSError: if *src* does not match any files or directories
|
||||
IOError: if *src* does not match any files or directories
|
||||
ValueError: if *src* matches multiple files but *dest* is
|
||||
not a directory
|
||||
"""
|
||||
@@ -681,7 +679,7 @@ def copy(src, dest, _permissions=False):
|
||||
|
||||
files = glob.glob(src)
|
||||
if not files:
|
||||
raise OSError("No such file or directory: '{0}'".format(src))
|
||||
raise IOError("No such file or directory: '{0}'".format(src))
|
||||
if len(files) > 1 and not os.path.isdir(dest):
|
||||
raise ValueError(
|
||||
"'{0}' matches multiple files but '{1}' is not a directory".format(src, dest)
|
||||
@@ -712,7 +710,7 @@ def install(src, dest):
|
||||
dest (str): the destination file or directory
|
||||
|
||||
Raises:
|
||||
OSError: if *src* does not match any files or directories
|
||||
IOError: if *src* does not match any files or directories
|
||||
ValueError: if *src* matches multiple files but *dest* is
|
||||
not a directory
|
||||
"""
|
||||
@@ -750,7 +748,7 @@ def copy_tree(
|
||||
_permissions (bool): for internal use only
|
||||
|
||||
Raises:
|
||||
OSError: if *src* does not match any files or directories
|
||||
IOError: if *src* does not match any files or directories
|
||||
ValueError: if *src* is a parent directory of *dest*
|
||||
"""
|
||||
if _permissions:
|
||||
@@ -764,7 +762,7 @@ def copy_tree(
|
||||
|
||||
files = glob.glob(src)
|
||||
if not files:
|
||||
raise OSError("No such file or directory: '{0}'".format(src))
|
||||
raise IOError("No such file or directory: '{0}'".format(src))
|
||||
|
||||
# For Windows hard-links and junctions, the source path must exist to make a symlink. Add
|
||||
# all symlinks to this list while traversing the tree, then when finished, make all
|
||||
@@ -845,7 +843,7 @@ def install_tree(src, dest, symlinks=True, ignore=None):
|
||||
ignore (typing.Callable): function indicating which files to ignore
|
||||
|
||||
Raises:
|
||||
OSError: if *src* does not match any files or directories
|
||||
IOError: if *src* does not match any files or directories
|
||||
ValueError: if *src* is a parent directory of *dest*
|
||||
"""
|
||||
copy_tree(src, dest, symlinks=symlinks, ignore=ignore, _permissions=True)
|
||||
@@ -2456,69 +2454,26 @@ class WindowsSimulatedRPath:
|
||||
and vis versa.
|
||||
"""
|
||||
|
||||
def __init__(
|
||||
self,
|
||||
package,
|
||||
base_modification_prefix: Optional[Union[str, pathlib.Path]] = None,
|
||||
link_install_prefix: bool = True,
|
||||
):
|
||||
def __init__(self, package, link_install_prefix=True):
|
||||
"""
|
||||
Args:
|
||||
package (spack.package_base.PackageBase): Package requiring links
|
||||
base_modification_prefix (str|pathlib.Path): Path representation indicating
|
||||
the root directory in which to establish the simulated rpath, ie where the
|
||||
symlinks that comprise the "rpath" behavior will be installed.
|
||||
|
||||
Note: This is a mutually exclusive option with `link_install_prefix` using
|
||||
both is an error.
|
||||
|
||||
Default: None
|
||||
link_install_prefix (bool): Link against package's own install or stage root.
|
||||
Packages that run their own executables during build and require rpaths to
|
||||
the build directory during build time require this option.
|
||||
|
||||
Default: install
|
||||
the build directory during build time require this option. Default: install
|
||||
root
|
||||
|
||||
Note: This is a mutually exclusive option with `base_modification_prefix`, using
|
||||
both is an error.
|
||||
"""
|
||||
self.pkg = package
|
||||
self._addl_rpaths: set[str] = set()
|
||||
if link_install_prefix and base_modification_prefix:
|
||||
raise RuntimeError(
|
||||
"Invalid combination of arguments given to WindowsSimulated RPath.\n"
|
||||
"Select either `link_install_prefix` to create an install prefix rpath"
|
||||
" or specify a `base_modification_prefix` for any other link type. "
|
||||
"Specifying both arguments is invalid."
|
||||
)
|
||||
if not (link_install_prefix or base_modification_prefix):
|
||||
raise RuntimeError(
|
||||
"Insufficient arguments given to WindowsSimulatedRpath.\n"
|
||||
"WindowsSimulatedRPath requires one of link_install_prefix"
|
||||
" or base_modification_prefix to be specified."
|
||||
" Neither was provided."
|
||||
)
|
||||
|
||||
self._addl_rpaths = set()
|
||||
self.link_install_prefix = link_install_prefix
|
||||
if base_modification_prefix:
|
||||
self.base_modification_prefix = pathlib.Path(base_modification_prefix)
|
||||
else:
|
||||
self.base_modification_prefix = pathlib.Path(self.pkg.prefix)
|
||||
self._additional_library_dependents: set[pathlib.Path] = set()
|
||||
if not self.link_install_prefix:
|
||||
tty.debug(f"Generating rpath for non install context: {base_modification_prefix}")
|
||||
self._additional_library_dependents = set()
|
||||
|
||||
@property
|
||||
def library_dependents(self):
|
||||
"""
|
||||
Set of directories where package binaries/libraries are located.
|
||||
"""
|
||||
base_pths = set()
|
||||
if self.link_install_prefix:
|
||||
base_pths.add(pathlib.Path(self.pkg.prefix.bin))
|
||||
base_pths |= self._additional_library_dependents
|
||||
return base_pths
|
||||
return set([pathlib.Path(self.pkg.prefix.bin)]) | self._additional_library_dependents
|
||||
|
||||
def add_library_dependent(self, *dest):
|
||||
"""
|
||||
@@ -2534,12 +2489,6 @@ def add_library_dependent(self, *dest):
|
||||
new_pth = pathlib.Path(pth).parent
|
||||
else:
|
||||
new_pth = pathlib.Path(pth)
|
||||
path_is_in_prefix = new_pth.is_relative_to(self.base_modification_prefix)
|
||||
if not path_is_in_prefix:
|
||||
raise RuntimeError(
|
||||
f"Attempting to generate rpath symlink out of rpath context:\
|
||||
{str(self.base_modification_prefix)}"
|
||||
)
|
||||
self._additional_library_dependents.add(new_pth)
|
||||
|
||||
@property
|
||||
@@ -2628,33 +2577,6 @@ def establish_link(self):
|
||||
self._link(library, lib_dir)
|
||||
|
||||
|
||||
def make_package_test_rpath(pkg, test_dir: Union[str, pathlib.Path]):
|
||||
"""Establishes a temp Windows simulated rpath for the pkg in the testing directory
|
||||
so an executable can test the libraries/executables with proper access
|
||||
to dependent dlls
|
||||
|
||||
Note: this is a no-op on all other platforms besides Windows
|
||||
|
||||
Args:
|
||||
pkg (spack.package_base.PackageBase): the package for which the rpath should be computed
|
||||
test_dir: the testing directory in which we should construct an rpath
|
||||
"""
|
||||
# link_install_prefix as false ensures we're not linking into the install prefix
|
||||
mini_rpath = WindowsSimulatedRPath(pkg, link_install_prefix=False)
|
||||
# add the testing directory as a location to install rpath symlinks
|
||||
mini_rpath.add_library_dependent(test_dir)
|
||||
|
||||
# check for whether build_directory is available, if not
|
||||
# assume the stage root is the build dir
|
||||
build_dir_attr = getattr(pkg, "build_directory", None)
|
||||
build_directory = build_dir_attr if build_dir_attr else pkg.stage.path
|
||||
# add the build dir & build dir bin
|
||||
mini_rpath.add_rpath(os.path.join(build_directory, "bin"))
|
||||
mini_rpath.add_rpath(os.path.join(build_directory))
|
||||
# construct rpath
|
||||
mini_rpath.establish_link()
|
||||
|
||||
|
||||
@system_path_filter
|
||||
@memoized
|
||||
def can_access_dir(path):
|
||||
@@ -2883,20 +2805,6 @@ def keep_modification_time(*filenames):
|
||||
os.utime(f, (os.path.getatime(f), mtime))
|
||||
|
||||
|
||||
@contextmanager
|
||||
def temporary_file_position(stream):
|
||||
orig_pos = stream.tell()
|
||||
yield
|
||||
stream.seek(orig_pos)
|
||||
|
||||
|
||||
@contextmanager
|
||||
def current_file_position(stream: IO[str], loc: int, relative_to=io.SEEK_CUR):
|
||||
with temporary_file_position(stream):
|
||||
stream.seek(loc, relative_to)
|
||||
yield
|
||||
|
||||
|
||||
@contextmanager
|
||||
def temporary_dir(
|
||||
suffix: Optional[str] = None, prefix: Optional[str] = None, dir: Optional[str] = None
|
||||
|
||||
@@ -14,7 +14,7 @@
|
||||
import typing
|
||||
import warnings
|
||||
from datetime import datetime, timedelta
|
||||
from typing import Callable, Dict, Iterable, List, Mapping, Optional, Tuple, TypeVar
|
||||
from typing import Callable, Dict, Iterable, List, Tuple, TypeVar
|
||||
|
||||
# Ignore emacs backups when listing modules
|
||||
ignore_modules = r"^\.#|~$"
|
||||
@@ -72,7 +72,7 @@ def index_by(objects, *funcs):
|
||||
if isinstance(f, str):
|
||||
f = lambda x: getattr(x, funcs[0])
|
||||
elif isinstance(f, tuple):
|
||||
f = lambda x: tuple(getattr(x, p, None) for p in funcs[0])
|
||||
f = lambda x: tuple(getattr(x, p) for p in funcs[0])
|
||||
|
||||
result = {}
|
||||
for o in objects:
|
||||
@@ -996,8 +996,11 @@ def _receive_forwarded(self, context: str, exc: Exception, tb: List[str]):
|
||||
def grouped_message(self, with_tracebacks: bool = True) -> str:
|
||||
"""Print out an error message coalescing all the forwarded errors."""
|
||||
each_exception_message = [
|
||||
"\n\t{0} raised {1}: {2}\n{3}".format(
|
||||
context, exc.__class__.__name__, exc, f"\n{''.join(tb)}" if with_tracebacks else ""
|
||||
"{0} raised {1}: {2}{3}".format(
|
||||
context,
|
||||
exc.__class__.__name__,
|
||||
exc,
|
||||
"\n{0}".format("".join(tb)) if with_tracebacks else "",
|
||||
)
|
||||
for context, exc, tb in self.exceptions
|
||||
]
|
||||
@@ -1077,88 +1080,3 @@ def __set__(self, instance, value):
|
||||
|
||||
def factory(self, instance, owner):
|
||||
raise NotImplementedError("must be implemented by derived classes")
|
||||
|
||||
|
||||
KT = TypeVar("KT")
|
||||
VT = TypeVar("VT")
|
||||
|
||||
|
||||
class PriorityOrderedMapping(Mapping[KT, VT]):
|
||||
"""Mapping that iterates over key according to an integer priority. If the priority is
|
||||
the same for two keys, insertion order is what matters.
|
||||
|
||||
The priority is set when the key/value pair is added. If not set, the highest current priority
|
||||
is used.
|
||||
"""
|
||||
|
||||
_data: Dict[KT, VT]
|
||||
_priorities: List[Tuple[int, KT]]
|
||||
|
||||
def __init__(self) -> None:
|
||||
self._data = {}
|
||||
# Tuple of (priority, key)
|
||||
self._priorities = []
|
||||
|
||||
def __getitem__(self, key: KT) -> VT:
|
||||
return self._data[key]
|
||||
|
||||
def __len__(self) -> int:
|
||||
return len(self._data)
|
||||
|
||||
def __iter__(self):
|
||||
yield from (key for _, key in self._priorities)
|
||||
|
||||
def __reversed__(self):
|
||||
yield from (key for _, key in reversed(self._priorities))
|
||||
|
||||
def reversed_keys(self):
|
||||
"""Iterates over keys from the highest priority, to the lowest."""
|
||||
return reversed(self)
|
||||
|
||||
def reversed_values(self):
|
||||
"""Iterates over values from the highest priority, to the lowest."""
|
||||
yield from (self._data[key] for _, key in reversed(self._priorities))
|
||||
|
||||
def _highest_priority(self) -> int:
|
||||
if not self._priorities:
|
||||
return 0
|
||||
result, _ = self._priorities[-1]
|
||||
return result
|
||||
|
||||
def add(self, key: KT, *, value: VT, priority: Optional[int] = None) -> None:
|
||||
"""Adds a key/value pair to the mapping, with a specific priority.
|
||||
|
||||
If the priority is None, then it is assumed to be the highest priority value currently
|
||||
in the container.
|
||||
|
||||
Raises:
|
||||
ValueError: when the same priority is already in the mapping
|
||||
"""
|
||||
if priority is None:
|
||||
priority = self._highest_priority()
|
||||
|
||||
if key in self._data:
|
||||
self.remove(key)
|
||||
|
||||
self._priorities.append((priority, key))
|
||||
# We rely on sort being stable
|
||||
self._priorities.sort(key=lambda x: x[0])
|
||||
self._data[key] = value
|
||||
assert len(self._data) == len(self._priorities)
|
||||
|
||||
def remove(self, key: KT) -> VT:
|
||||
"""Removes a key from the mapping.
|
||||
|
||||
Returns:
|
||||
The value associated with the key being removed
|
||||
|
||||
Raises:
|
||||
KeyError: if the key is not in the mapping
|
||||
"""
|
||||
if key not in self._data:
|
||||
raise KeyError(f"cannot find {key}")
|
||||
|
||||
popped_item = self._data.pop(key)
|
||||
self._priorities = [(p, k) for p, k in self._priorities if k != key]
|
||||
assert len(self._data) == len(self._priorities)
|
||||
return popped_item
|
||||
|
||||
@@ -41,16 +41,6 @@ def __init__(self, dst, src_a=None, src_b=None):
|
||||
self.src_a = src_a
|
||||
self.src_b = src_b
|
||||
|
||||
def __repr__(self) -> str:
|
||||
return f"MergeConflict(dst={self.dst!r}, src_a={self.src_a!r}, src_b={self.src_b!r})"
|
||||
|
||||
|
||||
def _samefile(a: str, b: str):
|
||||
try:
|
||||
return os.path.samefile(a, b)
|
||||
except OSError:
|
||||
return False
|
||||
|
||||
|
||||
class SourceMergeVisitor(BaseDirectoryVisitor):
|
||||
"""
|
||||
@@ -60,14 +50,9 @@ class SourceMergeVisitor(BaseDirectoryVisitor):
|
||||
- A list of merge conflicts in dst/
|
||||
"""
|
||||
|
||||
def __init__(
|
||||
self, ignore: Optional[Callable[[str], bool]] = None, normalize_paths: bool = False
|
||||
):
|
||||
def __init__(self, ignore: Optional[Callable[[str], bool]] = None):
|
||||
self.ignore = ignore if ignore is not None else lambda f: False
|
||||
|
||||
# On case-insensitive filesystems, normalize paths to detect duplications
|
||||
self.normalize_paths = normalize_paths
|
||||
|
||||
# When mapping <src root> to <dst root>/<projection>, we need to prepend the <projection>
|
||||
# bit to the relative path in the destination dir.
|
||||
self.projection: str = ""
|
||||
@@ -86,88 +71,10 @@ def __init__(
|
||||
# and can run mkdir in order.
|
||||
self.directories: Dict[str, Tuple[str, str]] = {}
|
||||
|
||||
# If the visitor is configured to normalize paths, keep a map of
|
||||
# normalized path to: original path, root directory + relative path
|
||||
self._directories_normalized: Dict[str, Tuple[str, str, str]] = {}
|
||||
|
||||
# Files to link. Maps dst_rel to (src_root, src_rel). This is an ordered dict, where files
|
||||
# are guaranteed to be grouped by src_root in the order they were visited.
|
||||
self.files: Dict[str, Tuple[str, str]] = {}
|
||||
|
||||
# If the visitor is configured to normalize paths, keep a map of
|
||||
# normalized path to: original path, root directory + relative path
|
||||
self._files_normalized: Dict[str, Tuple[str, str, str]] = {}
|
||||
|
||||
def _in_directories(self, proj_rel_path: str) -> bool:
|
||||
"""
|
||||
Check if a path is already in the directory list
|
||||
"""
|
||||
if self.normalize_paths:
|
||||
return proj_rel_path.lower() in self._directories_normalized
|
||||
else:
|
||||
return proj_rel_path in self.directories
|
||||
|
||||
def _directory(self, proj_rel_path: str) -> Tuple[str, str, str]:
|
||||
"""
|
||||
Get the directory that is mapped to a path
|
||||
"""
|
||||
if self.normalize_paths:
|
||||
return self._directories_normalized[proj_rel_path.lower()]
|
||||
else:
|
||||
return (proj_rel_path, *self.directories[proj_rel_path])
|
||||
|
||||
def _del_directory(self, proj_rel_path: str):
|
||||
"""
|
||||
Remove a directory from the list of directories
|
||||
"""
|
||||
del self.directories[proj_rel_path]
|
||||
if self.normalize_paths:
|
||||
del self._directories_normalized[proj_rel_path.lower()]
|
||||
|
||||
def _add_directory(self, proj_rel_path: str, root: str, rel_path: str):
|
||||
"""
|
||||
Add a directory to the list of directories.
|
||||
Also stores the normalized version for later lookups
|
||||
"""
|
||||
self.directories[proj_rel_path] = (root, rel_path)
|
||||
if self.normalize_paths:
|
||||
self._directories_normalized[proj_rel_path.lower()] = (proj_rel_path, root, rel_path)
|
||||
|
||||
def _in_files(self, proj_rel_path: str) -> bool:
|
||||
"""
|
||||
Check if a path is already in the files list
|
||||
"""
|
||||
if self.normalize_paths:
|
||||
return proj_rel_path.lower() in self._files_normalized
|
||||
else:
|
||||
return proj_rel_path in self.files
|
||||
|
||||
def _file(self, proj_rel_path: str) -> Tuple[str, str, str]:
|
||||
"""
|
||||
Get the file that is mapped to a path
|
||||
"""
|
||||
if self.normalize_paths:
|
||||
return self._files_normalized[proj_rel_path.lower()]
|
||||
else:
|
||||
return (proj_rel_path, *self.files[proj_rel_path])
|
||||
|
||||
def _del_file(self, proj_rel_path: str):
|
||||
"""
|
||||
Remove a file from the list of files
|
||||
"""
|
||||
del self.files[proj_rel_path]
|
||||
if self.normalize_paths:
|
||||
del self._files_normalized[proj_rel_path.lower()]
|
||||
|
||||
def _add_file(self, proj_rel_path: str, root: str, rel_path: str):
|
||||
"""
|
||||
Add a file to the list of files
|
||||
Also stores the normalized version for later lookups
|
||||
"""
|
||||
self.files[proj_rel_path] = (root, rel_path)
|
||||
if self.normalize_paths:
|
||||
self._files_normalized[proj_rel_path.lower()] = (proj_rel_path, root, rel_path)
|
||||
|
||||
def before_visit_dir(self, root: str, rel_path: str, depth: int) -> bool:
|
||||
"""
|
||||
Register a directory if dst / rel_path is not blocked by a file or ignored.
|
||||
@@ -177,28 +84,23 @@ def before_visit_dir(self, root: str, rel_path: str, depth: int) -> bool:
|
||||
if self.ignore(rel_path):
|
||||
# Don't recurse when dir is ignored.
|
||||
return False
|
||||
elif self._in_files(proj_rel_path):
|
||||
# A file-dir conflict is fatal except if they're the same file (symlinked dir).
|
||||
src_a = os.path.join(*self._file(proj_rel_path))
|
||||
src_b = os.path.join(root, rel_path)
|
||||
|
||||
if not _samefile(src_a, src_b):
|
||||
self.fatal_conflicts.append(
|
||||
MergeConflict(dst=proj_rel_path, src_a=src_a, src_b=src_b)
|
||||
elif proj_rel_path in self.files:
|
||||
# Can't create a dir where a file is.
|
||||
src_a_root, src_a_relpath = self.files[proj_rel_path]
|
||||
self.fatal_conflicts.append(
|
||||
MergeConflict(
|
||||
dst=proj_rel_path,
|
||||
src_a=os.path.join(src_a_root, src_a_relpath),
|
||||
src_b=os.path.join(root, rel_path),
|
||||
)
|
||||
return False
|
||||
|
||||
# Remove the link in favor of the dir.
|
||||
existing_proj_rel_path, _, _ = self._file(proj_rel_path)
|
||||
self._del_file(existing_proj_rel_path)
|
||||
self._add_directory(proj_rel_path, root, rel_path)
|
||||
return True
|
||||
elif self._in_directories(proj_rel_path):
|
||||
)
|
||||
return False
|
||||
elif proj_rel_path in self.directories:
|
||||
# No new directory, carry on.
|
||||
return True
|
||||
else:
|
||||
# Register new directory.
|
||||
self._add_directory(proj_rel_path, root, rel_path)
|
||||
self.directories[proj_rel_path] = (root, rel_path)
|
||||
return True
|
||||
|
||||
def before_visit_symlinked_dir(self, root: str, rel_path: str, depth: int) -> bool:
|
||||
@@ -230,7 +132,7 @@ def before_visit_symlinked_dir(self, root: str, rel_path: str, depth: int) -> bo
|
||||
if handle_as_dir:
|
||||
return self.before_visit_dir(root, rel_path, depth)
|
||||
|
||||
self.visit_file(root, rel_path, depth, symlink=True)
|
||||
self.visit_file(root, rel_path, depth)
|
||||
return False
|
||||
|
||||
def visit_file(self, root: str, rel_path: str, depth: int, *, symlink: bool = False) -> None:
|
||||
@@ -238,23 +140,30 @@ def visit_file(self, root: str, rel_path: str, depth: int, *, symlink: bool = Fa
|
||||
|
||||
if self.ignore(rel_path):
|
||||
pass
|
||||
elif self._in_directories(proj_rel_path):
|
||||
# Can't create a file where a dir is, unless they are the same file (symlinked dir),
|
||||
# in which case we simply drop the symlink in favor of the actual dir.
|
||||
src_a = os.path.join(*self._directory(proj_rel_path))
|
||||
src_b = os.path.join(root, rel_path)
|
||||
if not symlink or not _samefile(src_a, src_b):
|
||||
self.fatal_conflicts.append(
|
||||
MergeConflict(dst=proj_rel_path, src_a=src_a, src_b=src_b)
|
||||
elif proj_rel_path in self.directories:
|
||||
# Can't create a file where a dir is; fatal error
|
||||
self.fatal_conflicts.append(
|
||||
MergeConflict(
|
||||
dst=proj_rel_path,
|
||||
src_a=os.path.join(*self.directories[proj_rel_path]),
|
||||
src_b=os.path.join(root, rel_path),
|
||||
)
|
||||
elif self._in_files(proj_rel_path):
|
||||
)
|
||||
elif proj_rel_path in self.files:
|
||||
# When two files project to the same path, they conflict iff they are distinct.
|
||||
# If they are the same (i.e. one links to the other), register regular files rather
|
||||
# than symlinks. The reason is that in copy-type views, we need a copy of the actual
|
||||
# file, not the symlink.
|
||||
src_a = os.path.join(*self._file(proj_rel_path))
|
||||
|
||||
src_a = os.path.join(*self.files[proj_rel_path])
|
||||
src_b = os.path.join(root, rel_path)
|
||||
if not _samefile(src_a, src_b):
|
||||
|
||||
try:
|
||||
samefile = os.path.samefile(src_a, src_b)
|
||||
except OSError:
|
||||
samefile = False
|
||||
|
||||
if not samefile:
|
||||
# Distinct files produce a conflict.
|
||||
self.file_conflicts.append(
|
||||
MergeConflict(dst=proj_rel_path, src_a=src_a, src_b=src_b)
|
||||
@@ -264,12 +173,12 @@ def visit_file(self, root: str, rel_path: str, depth: int, *, symlink: bool = Fa
|
||||
if not symlink:
|
||||
# Remove the link in favor of the actual file. The del is necessary to maintain the
|
||||
# order of the files dict, which is grouped by root.
|
||||
existing_proj_rel_path, _, _ = self._file(proj_rel_path)
|
||||
self._del_file(existing_proj_rel_path)
|
||||
self._add_file(proj_rel_path, root, rel_path)
|
||||
del self.files[proj_rel_path]
|
||||
self.files[proj_rel_path] = (root, rel_path)
|
||||
|
||||
else:
|
||||
# Otherwise register this file to be linked.
|
||||
self._add_file(proj_rel_path, root, rel_path)
|
||||
self.files[proj_rel_path] = (root, rel_path)
|
||||
|
||||
def visit_symlinked_file(self, root: str, rel_path: str, depth: int) -> None:
|
||||
# Treat symlinked files as ordinary files (without "dereferencing")
|
||||
@@ -288,11 +197,11 @@ def set_projection(self, projection: str) -> None:
|
||||
path = ""
|
||||
for part in self.projection.split(os.sep):
|
||||
path = os.path.join(path, part)
|
||||
if not self._in_files(path):
|
||||
self._add_directory(path, "<projection>", path)
|
||||
if path not in self.files:
|
||||
self.directories[path] = ("<projection>", path)
|
||||
else:
|
||||
# Can't create a dir where a file is.
|
||||
_, src_a_root, src_a_relpath = self._file(path)
|
||||
src_a_root, src_a_relpath = self.files[path]
|
||||
self.fatal_conflicts.append(
|
||||
MergeConflict(
|
||||
dst=path,
|
||||
@@ -318,8 +227,8 @@ def __init__(self, source_merge_visitor: SourceMergeVisitor):
|
||||
def before_visit_dir(self, root: str, rel_path: str, depth: int) -> bool:
|
||||
# If destination dir is a file in a src dir, add a conflict,
|
||||
# and don't traverse deeper
|
||||
if self.src._in_files(rel_path):
|
||||
_, src_a_root, src_a_relpath = self.src._file(rel_path)
|
||||
if rel_path in self.src.files:
|
||||
src_a_root, src_a_relpath = self.src.files[rel_path]
|
||||
self.src.fatal_conflicts.append(
|
||||
MergeConflict(
|
||||
rel_path, os.path.join(src_a_root, src_a_relpath), os.path.join(root, rel_path)
|
||||
@@ -329,9 +238,8 @@ def before_visit_dir(self, root: str, rel_path: str, depth: int) -> bool:
|
||||
|
||||
# If destination dir was also a src dir, remove the mkdir
|
||||
# action, and traverse deeper.
|
||||
if self.src._in_directories(rel_path):
|
||||
existing_proj_rel_path, _, _ = self.src._directory(rel_path)
|
||||
self.src._del_directory(existing_proj_rel_path)
|
||||
if rel_path in self.src.directories:
|
||||
del self.src.directories[rel_path]
|
||||
return True
|
||||
|
||||
# If the destination dir does not appear in the src dir,
|
||||
@@ -344,24 +252,38 @@ def before_visit_symlinked_dir(self, root: str, rel_path: str, depth: int) -> bo
|
||||
be seen as files; we should not accidentally merge
|
||||
source dir with a symlinked dest dir.
|
||||
"""
|
||||
|
||||
self.visit_file(root, rel_path, depth)
|
||||
|
||||
# Never descend into symlinked target dirs.
|
||||
return False
|
||||
|
||||
def visit_file(self, root: str, rel_path: str, depth: int) -> None:
|
||||
# Can't merge a file if target already exists
|
||||
if self.src._in_directories(rel_path):
|
||||
_, src_a_root, src_a_relpath = self.src._directory(rel_path)
|
||||
# Always conflict
|
||||
if rel_path in self.src.directories:
|
||||
src_a_root, src_a_relpath = self.src.directories[rel_path]
|
||||
self.src.fatal_conflicts.append(
|
||||
MergeConflict(
|
||||
rel_path, os.path.join(src_a_root, src_a_relpath), os.path.join(root, rel_path)
|
||||
)
|
||||
)
|
||||
|
||||
elif self.src._in_files(rel_path):
|
||||
_, src_a_root, src_a_relpath = self.src._file(rel_path)
|
||||
if rel_path in self.src.files:
|
||||
src_a_root, src_a_relpath = self.src.files[rel_path]
|
||||
self.src.fatal_conflicts.append(
|
||||
MergeConflict(
|
||||
rel_path, os.path.join(src_a_root, src_a_relpath), os.path.join(root, rel_path)
|
||||
)
|
||||
)
|
||||
|
||||
# Never descend into symlinked target dirs.
|
||||
return False
|
||||
|
||||
def visit_file(self, root: str, rel_path: str, depth: int) -> None:
|
||||
# Can't merge a file if target already exists
|
||||
if rel_path in self.src.directories:
|
||||
src_a_root, src_a_relpath = self.src.directories[rel_path]
|
||||
self.src.fatal_conflicts.append(
|
||||
MergeConflict(
|
||||
rel_path, os.path.join(src_a_root, src_a_relpath), os.path.join(root, rel_path)
|
||||
)
|
||||
)
|
||||
|
||||
elif rel_path in self.src.files:
|
||||
src_a_root, src_a_relpath = self.src.files[rel_path]
|
||||
self.src.fatal_conflicts.append(
|
||||
MergeConflict(
|
||||
rel_path, os.path.join(src_a_root, src_a_relpath), os.path.join(root, rel_path)
|
||||
@@ -386,7 +308,7 @@ class LinkTree:
|
||||
|
||||
def __init__(self, source_root):
|
||||
if not os.path.exists(source_root):
|
||||
raise OSError("No such file or directory: '%s'", source_root)
|
||||
raise IOError("No such file or directory: '%s'", source_root)
|
||||
|
||||
self._root = source_root
|
||||
|
||||
|
||||
@@ -269,7 +269,7 @@ def __init__(
|
||||
|
||||
@staticmethod
|
||||
def _poll_interval_generator(
|
||||
_wait_times: Optional[Tuple[float, float, float]] = None,
|
||||
_wait_times: Optional[Tuple[float, float, float]] = None
|
||||
) -> Generator[float, None, None]:
|
||||
"""This implements a backoff scheme for polling a contended resource
|
||||
by suggesting a succession of wait times between polls.
|
||||
@@ -391,7 +391,7 @@ def _poll_lock(self, op: int) -> bool:
|
||||
|
||||
return True
|
||||
|
||||
except OSError as e:
|
||||
except IOError as e:
|
||||
# EAGAIN and EACCES == locked by another process (so try again)
|
||||
if e.errno not in (errno.EAGAIN, errno.EACCES):
|
||||
raise
|
||||
|
||||
@@ -2,7 +2,8 @@
|
||||
#
|
||||
# SPDX-License-Identifier: (Apache-2.0 OR MIT)
|
||||
|
||||
"""Utility classes for logging the output of blocks of code."""
|
||||
"""Utility classes for logging the output of blocks of code.
|
||||
"""
|
||||
import atexit
|
||||
import ctypes
|
||||
import errno
|
||||
@@ -343,6 +344,26 @@ def close(self):
|
||||
self.file.close()
|
||||
|
||||
|
||||
@contextmanager
|
||||
def replace_environment(env):
|
||||
"""Replace the current environment (`os.environ`) with `env`.
|
||||
|
||||
If `env` is empty (or None), this unsets all current environment
|
||||
variables.
|
||||
"""
|
||||
env = env or {}
|
||||
old_env = os.environ.copy()
|
||||
try:
|
||||
os.environ.clear()
|
||||
for name, val in env.items():
|
||||
os.environ[name] = val
|
||||
yield
|
||||
finally:
|
||||
os.environ.clear()
|
||||
for name, val in old_env.items():
|
||||
os.environ[name] = val
|
||||
|
||||
|
||||
def log_output(*args, **kwargs):
|
||||
"""Context manager that logs its output to a file.
|
||||
|
||||
@@ -426,6 +447,7 @@ def __init__(
|
||||
self.echo = echo
|
||||
self.debug = debug
|
||||
self.buffer = buffer
|
||||
self.env = env # the environment to use for _writer_daemon
|
||||
self.filter_fn = filter_fn
|
||||
|
||||
self._active = False # used to prevent re-entry
|
||||
@@ -497,20 +519,21 @@ def __enter__(self):
|
||||
# just don't forward input if this fails
|
||||
pass
|
||||
|
||||
self.process = multiprocessing.Process(
|
||||
target=_writer_daemon,
|
||||
args=(
|
||||
input_fd,
|
||||
read_fd,
|
||||
self.write_fd,
|
||||
self.echo,
|
||||
self.log_file,
|
||||
child_pipe,
|
||||
self.filter_fn,
|
||||
),
|
||||
)
|
||||
self.process.daemon = True # must set before start()
|
||||
self.process.start()
|
||||
with replace_environment(self.env):
|
||||
self.process = multiprocessing.Process(
|
||||
target=_writer_daemon,
|
||||
args=(
|
||||
input_fd,
|
||||
read_fd,
|
||||
self.write_fd,
|
||||
self.echo,
|
||||
self.log_file,
|
||||
child_pipe,
|
||||
self.filter_fn,
|
||||
),
|
||||
)
|
||||
self.process.daemon = True # must set before start()
|
||||
self.process.start()
|
||||
|
||||
finally:
|
||||
if input_fd:
|
||||
@@ -706,7 +729,10 @@ class winlog:
|
||||
Does not support the use of 'v' toggling as nixlog does.
|
||||
"""
|
||||
|
||||
def __init__(self, file_like=None, echo=False, debug=0, buffer=False, filter_fn=None):
|
||||
def __init__(
|
||||
self, file_like=None, echo=False, debug=0, buffer=False, env=None, filter_fn=None
|
||||
):
|
||||
self.env = env
|
||||
self.debug = debug
|
||||
self.echo = echo
|
||||
self.logfile = file_like
|
||||
@@ -763,10 +789,11 @@ def background_reader(reader, echo_writer, _kill):
|
||||
reader.close()
|
||||
|
||||
self._active = True
|
||||
self._thread = Thread(
|
||||
target=background_reader, args=(self.reader, self.echo_writer, self._kill)
|
||||
)
|
||||
self._thread.start()
|
||||
with replace_environment(self.env):
|
||||
self._thread = Thread(
|
||||
target=background_reader, args=(self.reader, self.echo_writer, self._kill)
|
||||
)
|
||||
self._thread.start()
|
||||
return self
|
||||
|
||||
def __exit__(self, exc_type, exc_val, exc_tb):
|
||||
@@ -891,7 +918,7 @@ def _writer_daemon(
|
||||
try:
|
||||
if stdin_file.read(1) == "v":
|
||||
echo = not echo
|
||||
except OSError as e:
|
||||
except IOError as e:
|
||||
# If SIGTTIN is ignored, the system gives EIO
|
||||
# to let the caller know the read failed b/c it
|
||||
# was in the bg. Ignore that too.
|
||||
@@ -986,7 +1013,7 @@ def wrapped(*args, **kwargs):
|
||||
while True:
|
||||
try:
|
||||
return function(*args, **kwargs)
|
||||
except OSError as e:
|
||||
except IOError as e:
|
||||
if e.errno == errno.EINTR:
|
||||
continue
|
||||
raise
|
||||
|
||||
@@ -10,7 +10,7 @@
|
||||
import spack.util.git
|
||||
|
||||
#: PEP440 canonical <major>.<minor>.<micro>.<devN> string
|
||||
__version__ = "1.0.0-alpha.4"
|
||||
__version__ = "0.24.0.dev0"
|
||||
spack_version = __version__
|
||||
|
||||
|
||||
|
||||
@@ -1010,7 +1010,7 @@ def _issues_in_depends_on_directive(pkgs, error_cls):
|
||||
for dep_name, dep in deps_by_name.items():
|
||||
|
||||
def check_virtual_with_variants(spec, msg):
|
||||
if not spack.repo.PATH.is_virtual(spec.name) or not spec.variants:
|
||||
if not spec.virtual or not spec.variants:
|
||||
return
|
||||
error = error_cls(
|
||||
f"{pkg_name}: {msg}",
|
||||
|
||||
@@ -110,13 +110,6 @@ def __init__(self, root):
|
||||
self._write_transaction_impl = llnl.util.lang.nullcontext
|
||||
self._read_transaction_impl = llnl.util.lang.nullcontext
|
||||
|
||||
def _handle_old_db_versions_read(self, check, db, *, reindex: bool):
|
||||
if not self.is_readable():
|
||||
raise spack_db.DatabaseNotReadableError(
|
||||
f"cannot read buildcache v{self.db_version} at {self.root}"
|
||||
)
|
||||
return self._handle_current_version_read(check, db)
|
||||
|
||||
|
||||
class FetchCacheError(Exception):
|
||||
"""Error thrown when fetching the cache failed, usually a composite error list."""
|
||||
@@ -249,7 +242,7 @@ def _associate_built_specs_with_mirror(self, cache_key, mirror_url):
|
||||
self._index_file_cache.init_entry(cache_key)
|
||||
cache_path = self._index_file_cache.cache_path(cache_key)
|
||||
with self._index_file_cache.read_transaction(cache_key):
|
||||
db._read_from_file(pathlib.Path(cache_path))
|
||||
db._read_from_file(cache_path)
|
||||
except spack_db.InvalidDatabaseVersionError as e:
|
||||
tty.warn(
|
||||
f"you need a newer Spack version to read the buildcache index for the "
|
||||
@@ -636,14 +629,7 @@ def tarball_directory_name(spec):
|
||||
Return name of the tarball directory according to the convention
|
||||
<os>-<architecture>/<compiler>/<package>-<version>/
|
||||
"""
|
||||
if spec.original_spec_format() < 5:
|
||||
compiler = spec.annotations.compiler_node_attribute
|
||||
assert compiler is not None, "a compiler spec is expected"
|
||||
return spec.format_path(
|
||||
f"{spec.architecture}/{compiler.name}-{compiler.version}/{spec.name}-{spec.version}"
|
||||
)
|
||||
|
||||
return spec.format_path(f"{spec.architecture.platform}/{spec.name}-{spec.version}")
|
||||
return spec.format_path("{architecture}/{compiler.name}-{compiler.version}/{name}-{version}")
|
||||
|
||||
|
||||
def tarball_name(spec, ext):
|
||||
@@ -651,17 +637,9 @@ def tarball_name(spec, ext):
|
||||
Return the name of the tarfile according to the convention
|
||||
<os>-<architecture>-<package>-<dag_hash><ext>
|
||||
"""
|
||||
if spec.original_spec_format() < 5:
|
||||
compiler = spec.annotations.compiler_node_attribute
|
||||
assert compiler is not None, "a compiler spec is expected"
|
||||
spec_formatted = (
|
||||
f"{spec.architecture}-{compiler.name}-{compiler.version}-{spec.name}"
|
||||
f"-{spec.version}-{spec.dag_hash()}"
|
||||
)
|
||||
else:
|
||||
spec_formatted = (
|
||||
f"{spec.architecture.platform}-{spec.name}-{spec.version}-{spec.dag_hash()}"
|
||||
)
|
||||
spec_formatted = spec.format_path(
|
||||
"{architecture}-{compiler.name}-{compiler.version}-{name}-{version}-{hash}"
|
||||
)
|
||||
return f"{spec_formatted}{ext}"
|
||||
|
||||
|
||||
@@ -945,7 +923,7 @@ class FileTypes:
|
||||
UNKNOWN = 2
|
||||
|
||||
|
||||
NOT_ISO8859_1_TEXT = re.compile(b"[\x00\x7f-\x9f]")
|
||||
NOT_ISO8859_1_TEXT = re.compile(b"[\x00\x7F-\x9F]")
|
||||
|
||||
|
||||
def file_type(f: IO[bytes]) -> int:
|
||||
@@ -2551,10 +2529,10 @@ def install_root_node(
|
||||
allow_missing: when true, allows installing a node with missing dependencies
|
||||
"""
|
||||
# Early termination
|
||||
if spec.external or not spec.concrete:
|
||||
warnings.warn("Skipping external or abstract spec {0}".format(spec.format()))
|
||||
if spec.external or spec.virtual:
|
||||
warnings.warn("Skipping external or virtual package {0}".format(spec.format()))
|
||||
return
|
||||
elif spec.installed and not force:
|
||||
elif spec.concrete and spec.installed and not force:
|
||||
warnings.warn("Package for spec {0} already installed.".format(spec.format()))
|
||||
return
|
||||
|
||||
|
||||
@@ -234,8 +234,12 @@ def _root_spec(spec_str: str) -> str:
|
||||
# Add a compiler and platform requirement to the root spec.
|
||||
platform = str(spack.platforms.host())
|
||||
|
||||
if platform == "windows":
|
||||
if platform == "darwin":
|
||||
spec_str += " %apple-clang"
|
||||
elif platform == "windows":
|
||||
spec_str += " %msvc"
|
||||
elif platform == "linux":
|
||||
spec_str += " %gcc"
|
||||
elif platform == "freebsd":
|
||||
spec_str += " %clang"
|
||||
spec_str += f" platform={platform}"
|
||||
|
||||
@@ -15,13 +15,11 @@
|
||||
|
||||
import archspec.cpu
|
||||
|
||||
import spack.compilers.config
|
||||
import spack.compilers.libraries
|
||||
import spack.config
|
||||
import spack.compiler
|
||||
import spack.compilers
|
||||
import spack.platforms
|
||||
import spack.spec
|
||||
import spack.traverse
|
||||
import spack.version
|
||||
|
||||
from .config import spec_for_current_python
|
||||
|
||||
@@ -29,9 +27,9 @@
|
||||
class ClingoBootstrapConcretizer:
|
||||
def __init__(self, configuration):
|
||||
self.host_platform = spack.platforms.host()
|
||||
self.host_os = self.host_platform.default_operating_system()
|
||||
self.host_os = self.host_platform.operating_system("frontend")
|
||||
self.host_target = archspec.cpu.host().family
|
||||
self.host_architecture = spack.spec.ArchSpec.default_arch()
|
||||
self.host_architecture = spack.spec.ArchSpec.frontend_arch()
|
||||
self.host_architecture.target = str(self.host_target)
|
||||
self.host_compiler = self._valid_compiler_or_raise()
|
||||
self.host_python = self.python_external_spec()
|
||||
@@ -40,7 +38,7 @@ def __init__(self, configuration):
|
||||
|
||||
self.external_cmake, self.external_bison = self._externals_from_yaml(configuration)
|
||||
|
||||
def _valid_compiler_or_raise(self):
|
||||
def _valid_compiler_or_raise(self) -> "spack.compiler.Compiler":
|
||||
if str(self.host_platform) == "linux":
|
||||
compiler_name = "gcc"
|
||||
elif str(self.host_platform) == "darwin":
|
||||
@@ -48,30 +46,17 @@ def _valid_compiler_or_raise(self):
|
||||
elif str(self.host_platform) == "windows":
|
||||
compiler_name = "msvc"
|
||||
elif str(self.host_platform) == "freebsd":
|
||||
compiler_name = "llvm"
|
||||
compiler_name = "clang"
|
||||
else:
|
||||
raise RuntimeError(f"Cannot bootstrap clingo from sources on {self.host_platform}")
|
||||
|
||||
candidates = [
|
||||
x
|
||||
for x in spack.compilers.config.CompilerFactory.from_packages_yaml(spack.config.CONFIG)
|
||||
if x.name == compiler_name
|
||||
]
|
||||
candidates = spack.compilers.compilers_for_spec(
|
||||
compiler_name, arch_spec=self.host_architecture
|
||||
)
|
||||
if not candidates:
|
||||
raise RuntimeError(
|
||||
f"Cannot find any version of {compiler_name} to bootstrap clingo from sources"
|
||||
)
|
||||
candidates.sort(key=lambda x: x.version, reverse=True)
|
||||
best = candidates[0]
|
||||
# Get compilers for bootstrapping from the 'builtin' repository
|
||||
best.namespace = "builtin"
|
||||
# If the compiler does not support C++ 14, fail with a legible error message
|
||||
try:
|
||||
_ = best.package.standard_flag(language="cxx", standard="14")
|
||||
except RuntimeError as e:
|
||||
raise RuntimeError(
|
||||
"cannot find a compiler supporting C++ 14 [needed to bootstrap clingo]"
|
||||
) from e
|
||||
candidates.sort(key=lambda x: x.spec.version, reverse=True)
|
||||
return candidates[0]
|
||||
|
||||
def _externals_from_yaml(
|
||||
@@ -90,6 +75,9 @@ def _externals_from_yaml(
|
||||
if not s.satisfies(requirements[pkg_name]):
|
||||
continue
|
||||
|
||||
if not s.intersects(f"%{self.host_compiler.spec}"):
|
||||
continue
|
||||
|
||||
if not s.intersects(f"arch={self.host_architecture}"):
|
||||
continue
|
||||
|
||||
@@ -122,14 +110,11 @@ def concretize(self) -> "spack.spec.Spec":
|
||||
# Tweak it to conform to the host architecture
|
||||
for node in s.traverse():
|
||||
node.architecture.os = str(self.host_os)
|
||||
node.compiler = self.host_compiler.spec
|
||||
node.architecture = self.host_architecture
|
||||
|
||||
if node.name == "gcc-runtime":
|
||||
node.versions = self.host_compiler.versions
|
||||
|
||||
# Can't use re2c@3.1 with Python 3.6
|
||||
if self.host_python.satisfies("@3.6"):
|
||||
s["re2c"].versions.versions = [spack.version.from_string("=2.2")]
|
||||
node.versions = self.host_compiler.spec.versions
|
||||
|
||||
for edge in spack.traverse.traverse_edges([s], cover="edges"):
|
||||
if edge.spec.name == "python":
|
||||
@@ -141,9 +126,6 @@ def concretize(self) -> "spack.spec.Spec":
|
||||
if edge.spec.name == "cmake" and self.external_cmake:
|
||||
edge.spec = self.external_cmake
|
||||
|
||||
if edge.spec.name == self.host_compiler.name:
|
||||
edge.spec = self.host_compiler
|
||||
|
||||
if "libc" in edge.virtuals:
|
||||
edge.spec = self.host_libc
|
||||
|
||||
@@ -159,12 +141,12 @@ def python_external_spec(self) -> "spack.spec.Spec":
|
||||
return self._external_spec(result)
|
||||
|
||||
def libc_external_spec(self) -> "spack.spec.Spec":
|
||||
detector = spack.compilers.libraries.CompilerPropertyDetector(self.host_compiler)
|
||||
result = detector.default_libc()
|
||||
result = self.host_compiler.default_libc
|
||||
return self._external_spec(result)
|
||||
|
||||
def _external_spec(self, initial_spec) -> "spack.spec.Spec":
|
||||
initial_spec.namespace = "builtin"
|
||||
initial_spec.compiler = self.host_compiler.spec
|
||||
initial_spec.architecture = self.host_architecture
|
||||
for flag_type in spack.spec.FlagMap.valid_compiler_flags():
|
||||
initial_spec.compiler_flags[flag_type] = []
|
||||
|
||||
@@ -10,7 +10,7 @@
|
||||
|
||||
from llnl.util import tty
|
||||
|
||||
import spack.compilers.config
|
||||
import spack.compilers
|
||||
import spack.config
|
||||
import spack.environment
|
||||
import spack.modules
|
||||
@@ -141,9 +141,9 @@ def _bootstrap_config_scopes() -> Sequence["spack.config.ConfigScope"]:
|
||||
|
||||
|
||||
def _add_compilers_if_missing() -> None:
|
||||
arch = spack.spec.ArchSpec.default_arch()
|
||||
if not spack.compilers.config.compilers_for_arch(arch):
|
||||
spack.compilers.config.find_compilers()
|
||||
arch = spack.spec.ArchSpec.frontend_arch()
|
||||
if not spack.compilers.compilers_for_arch(arch):
|
||||
spack.compilers.find_compilers()
|
||||
|
||||
|
||||
@contextlib.contextmanager
|
||||
|
||||
@@ -292,12 +292,7 @@ def try_import(self, module: str, abstract_spec_str: str) -> bool:
|
||||
|
||||
# Install the spec that should make the module importable
|
||||
with spack.config.override(self.mirror_scope):
|
||||
PackageInstaller(
|
||||
[concrete_spec.package],
|
||||
fail_fast=True,
|
||||
package_use_cache=False,
|
||||
dependencies_use_cache=False,
|
||||
).install()
|
||||
PackageInstaller([concrete_spec.package], fail_fast=True).install()
|
||||
|
||||
if _try_import_from_store(module, query_spec=concrete_spec, query_info=info):
|
||||
self.last_search = info
|
||||
@@ -367,7 +362,6 @@ def ensure_module_importable_or_raise(module: str, abstract_spec: Optional[str]
|
||||
for current_config in bootstrapping_sources():
|
||||
if not source_is_enabled(current_config):
|
||||
continue
|
||||
|
||||
with exception_handler.forward(current_config["name"], Exception):
|
||||
if create_bootstrapper(current_config).try_import(module, abstract_spec):
|
||||
return
|
||||
|
||||
File diff suppressed because one or more lines are too long
File diff suppressed because one or more lines are too long
File diff suppressed because one or more lines are too long
File diff suppressed because one or more lines are too long
File diff suppressed because one or more lines are too long
File diff suppressed because one or more lines are too long
Some files were not shown because too many files have changed in this diff Show More
Reference in New Issue
Block a user