##############################################################################
# Copyright (c) 2013-2017, Lawrence Livermore National Security, LLC.
# Produced at the Lawrence Livermore National Laboratory.
#
# This file is part of Spack.
# Created by Todd Gamblin, tgamblin@llnl.gov, All rights reserved.
# LLNL-CODE-647188
#
# For details, see https://github.com/spack/spack
# Please also see the NOTICE and LICENSE files for our notice and the LGPL.
#
# This program is free software; you can redistribute it and/or modify
# it under the terms of the GNU Lesser General Public License (as
# published by the Free Software Foundation) version 2.1, February 1999.
#
# This program is distributed in the hope that it will be useful, but
# WITHOUT ANY WARRANTY; without even the IMPLIED WARRANTY OF
# MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the terms and
# conditions of the GNU Lesser General Public License for more details.
#
# You should have received a copy of the GNU Lesser General Public
# License along with this program; if not, write to the Free Software
# Foundation, Inc., 59 Temple Place, Suite 330, Boston, MA 02111-1307 USA
##############################################################################
from spack import *


class Itsx(Package):
    """Improved software detection and extraction of ITS1 and ITS2 from
       ribosomal ITS sequences of fungi and other eukaryotes for use in
       environmental sequencing"""

    homepage = "http://microbiology.se/software/itsx/"
    url      = "http://microbiology.se/sw/ITSx_1.0.11.tar.gz"

    version('1.0.11', '1bff12f1d5742f19be6ca585e9bf81fa')

    depends_on('perl', type=('build', 'run'))
    depends_on('hmmer')

    def install(self, spec, prefix):
        mkdirp(prefix.bin)
        install('ITSx', prefix.bin)
        install_tree('ITSx_db', prefix.bin.ITSx_db)