# Copyright 2013-2020 Lawrence Livermore National Security, LLC and other
# Spack Project Developers. See the top-level COPYRIGHT file for details.
#
# SPDX-License-Identifier: (Apache-2.0 OR MIT)

from spack import *


class RAffyqcreport(RPackage):
    """QC Report Generation for affyBatch objects.

       This package creates a QC report for an AffyBatch object. The report is
       intended to allow the user to quickly assess the quality of a set of
       arrays in an AffyBatch object."""

    homepage = "https://bioconductor.org/packages/affyQCReport"
    git      = "https://git.bioconductor.org/packages/affyQCReport.git"

    version('1.62.0', commit='92d4124b688b90a6a9b8a21ab9d13d92b368cee4')
    version('1.60.0', commit='d0c15b1c56fc1caf6f114877ea6c1b8483a0dcfa')
    version('1.58.0', commit='14be93a1e7a6d1a64c38ed2f53e0c52a389b2a1b')
    version('1.56.0', commit='5c824045c7364155eafc2dd5bb342374aa1ca072')
    version('1.54.0', commit='5572e9981dc874b78b4adebf58080cac3fbb69e1')

    depends_on('r-biobase@1.13.16:', type=('build', 'run'))
    depends_on('r-affy', type=('build', 'run'))
    depends_on('r-lattice', type=('build', 'run'))
    depends_on('r-affyplm', type=('build', 'run'))
    depends_on('r-genefilter', type=('build', 'run'))
    depends_on('r-rcolorbrewer', type=('build', 'run'))
    depends_on('r-simpleaffy', type=('build', 'run'))
    depends_on('r-xtable', type=('build', 'run'))