# Copyright 2013-2021 Lawrence Livermore National Security, LLC and other
# Spack Project Developers. See the top-level COPYRIGHT file for details.
#
# SPDX-License-Identifier: (Apache-2.0 OR MIT)

from spack import *


class RSiggenes(RPackage):
    """Multiple Testing using SAM and Efron's Empirical Bayes Approaches

       Identification of differentially expressed genes and estimation of the
       False Discovery Rate (FDR) using both the Significance Analysis of
       Microarrays (SAM) and the Empirical Bayes Analyses of Microarrays
       (EBAM)."""

    homepage = "https://bioconductor.org/packages/siggenes"
    git      = "https://git.bioconductor.org/packages/siggenes.git"

    version('1.64.0', commit='3b528d37c16fc41bbc5c98165f606394313aa050')
    version('1.58.0', commit='69500158d69942cf7c62f583830933cf8baf89a1')
    version('1.56.0', commit='3e929feaa76311be07ff51ad807e657b0b521f6f')
    version('1.54.0', commit='1630e42652192e3e4e48e9e78e53665a120cfc7f')
    version('1.52.0', commit='dc46cf4b6053ea99c6c841d661f97390653c2e71')
    version('1.50.0', commit='b1818f26e1449005ffd971df6bda8da0303080bc')

    depends_on('r-biobase', type=('build', 'run'))
    depends_on('r-multtest', type=('build', 'run'))
    depends_on('r-scrime@1.2.5:', when='@1.58.0:', type=('build', 'run'))