# Copyright 2013-2020 Lawrence Livermore National Security, LLC and other
# Spack Project Developers. See the top-level COPYRIGHT file for details.
#
# SPDX-License-Identifier: (Apache-2.0 OR MIT)

from spack import *


class RFdbInfiniummethylationHg19(RPackage):
    """Compiled HumanMethylation27 and HumanMethylation450 annotations."""

    # No available git repository
    homepage = "https://bioconductor.org/packages/release/data/annotation/html/FDb.InfiniumMethylation.hg19.html"
    url      = "https://bioconductor.org/packages/release/data/annotation/src/contrib/FDb.InfiniumMethylation.hg19_2.2.0.tar.gz"

    version('2.2.0', sha256='605aa3643588a2f40a942fa760b92662060a0dfedb26b4e4cd6f1a78b703093f')

    depends_on('r@2.10:', type=('build', 'run'))
    depends_on('r-genomicfeatures@1.7.22:', type=('build', 'run'))
    depends_on('r-txdb-hsapiens-ucsc-hg19-knowngene', type=('build', 'run'))
    depends_on('r-org-hs-eg-db', type=('build', 'run'))
    depends_on('r-annotationdbi', type=('build', 'run'))
    depends_on('r-biostrings', type=('build', 'run'))