# Copyright 2013-2023 Lawrence Livermore National Security, LLC and other # Spack Project Developers. See the top-level COPYRIGHT file for details. # # SPDX-License-Identifier: (Apache-2.0 OR MIT) from spack.package import * class Pplacer(Package): """Pplacer places query sequences on a fixed reference phylogenetic tree to maximize phylogenetic likelihood or posterior probability according to a reference alignment. Pplacer is designed to be fast, to give useful information about uncertainty, and to offer advanced visualization and downstream analysis. """ homepage = "https://matsen.fhcrc.org/pplacer/" url = "https://github.com/matsen/pplacer/releases/download/v1.1.alpha19/pplacer-linux-v1.1.alpha19.zip" version( "1.1.alpha19", sha256="9131b45c35ddb927f866385f149cf64af5dffe724234cd4548c22303a992347d" ) def install(self, spec, prefix): install_tree("scripts", prefix.bin) force_remove(join_path(prefix.bin, "setup.py")) install("guppy", prefix.bin) install("pplacer", prefix.bin) install("rppr", prefix.bin)