##############################################################################
# Copyright (c) 2013-2017, Lawrence Livermore National Security, LLC.
# Produced at the Lawrence Livermore National Laboratory.
#
# This file is part of Spack.
# Created by Todd Gamblin, tgamblin@llnl.gov, All rights reserved.
# LLNL-CODE-647188
#
# For details, see https://github.com/spack/spack
# Please also see the NOTICE and LICENSE files for our notice and the LGPL.
#
# This program is free software; you can redistribute it and/or modify
# it under the terms of the GNU Lesser General Public License (as
# published by the Free Software Foundation) version 2.1, February 1999.
#
# This program is distributed in the hope that it will be useful, but
# WITHOUT ANY WARRANTY; without even the IMPLIED WARRANTY OF
# MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the terms and
# conditions of the GNU Lesser General Public License for more details.
#
# You should have received a copy of the GNU Lesser General Public
# License along with this program; if not, write to the Free Software
# Foundation, Inc., 59 Temple Place, Suite 330, Boston, MA 02111-1307 USA
##############################################################################
from spack import *


class Probconsrna(Package):
    """Experimental version of PROBCONS with parameters estimated via
       unsupervised training on BRAliBASE """

    homepage = "http://probcons.stanford.edu/"
    url      = "http://probcons.stanford.edu/probconsRNA.tar.gz"

    version('2005-6-7', '2aa13012124208ca5dd6b0a1d508208d')

    def install(self, build, prefix):
        mkdirp(prefix.bin)
        install('compare', prefix.bin)
        install('makegnuplot', prefix.bin)
        install('probcons', prefix.bin)
        # needed for tcoffee
        install('probcons', prefix.bin.probconsRNA)
        install('project', prefix.bin)