##############################################################################
# Copyright (c) 2013-2018, Lawrence Livermore National Security, LLC.
# Produced at the Lawrence Livermore National Laboratory.
#
# This file is part of Spack.
# Created by Todd Gamblin, tgamblin@llnl.gov, All rights reserved.
# LLNL-CODE-647188
#
# For details, see https://github.com/spack/spack
# Please also see the NOTICE and LICENSE files for our notice and the LGPL.
#
# This program is free software; you can redistribute it and/or modify
# it under the terms of the GNU Lesser General Public License (as
# published by the Free Software Foundation) version 2.1, February 1999.
#
# This program is distributed in the hope that it will be useful, but
# WITHOUT ANY WARRANTY; without even the IMPLIED WARRANTY OF
# MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the terms and
# conditions of the GNU Lesser General Public License for more details.
#
# You should have received a copy of the GNU Lesser General Public
# License along with this program; if not, write to the Free Software
# Foundation, Inc., 59 Temple Place, Suite 330, Boston, MA 02111-1307 USA
##############################################################################
from spack import *


class RGeiger(RPackage):
    """Methods for fitting macroevolutionary models to phylogenetic trees."""

    homepage = "https://cran.r-project.org/package=geiger"
    url      = "https://cran.r-project.org/src/contrib/geiger_2.0.6.tar.gz"
    list_url = "https://cran.r-project.org/src/contrib/Archive/geiger"

    version('2.0.6', 'e5e1a407ea56805227d0f91bf6d95afc')

    depends_on('r-ape@3.0:', type=('build', 'run'))
    depends_on('r-mvtnorm', type=('build', 'run'))
    depends_on('r-subplex', type=('build', 'run'))
    depends_on('r-desolve@1.7:', type=('build', 'run'))
    depends_on('r-digest', type=('build', 'run'))
    depends_on('r-rcpp@0.9.0:', type=('build', 'run'))
    depends_on('r-coda', type=('build', 'run'))
    depends_on('r-ncbit', type=('build', 'run')) 
    depends_on('r-colorspace', type=('build', 'run'))
    depends_on('r-mass', type=('build', 'run'))