# Copyright 2013-2020 Lawrence Livermore National Security, LLC and other # Spack Project Developers. See the top-level COPYRIGHT file for details. # # SPDX-License-Identifier: (Apache-2.0 OR MIT) from spack import * class RLumi(RPackage): """The lumi package provides an integrated solution for the Illumina microarray data analysis. It includes functions of Illumina BeadStudio (GenomeStudio) data input, quality control, BeadArray-specific variance stabilization, normalization and gene annotation at the probe level. It also includes the functions of processing Illumina methylation microarrays, especially Illumina Infinium methylation microarrays.""" homepage = "https://bioconductor.org/packages/release/bioc/html/lumi.html" git = "https://git.bioconductor.org/packages/lumi" version('2.38.0', commit='321d480d44ce9a0c02ce5af1bddc1f549abdea59') depends_on('r@2.10:', type=('build', 'run')) depends_on('r-biobase@2.5.5:', type=('build', 'run')) depends_on('r-affy@1.23.4:', type=('build', 'run')) depends_on('r-methylumi@2.3.2:', type=('build', 'run')) depends_on('r-genomicfeatures', type=('build', 'run')) depends_on('r-genomicranges', type=('build', 'run')) depends_on('r-annotate', type=('build', 'run')) depends_on('r-lattice', type=('build', 'run')) depends_on('r-mgcv@1.4-0:', type=('build', 'run')) depends_on('r-nleqslv', type=('build', 'run')) depends_on('r-kernsmooth', type=('build', 'run')) depends_on('r-preprocesscore', type=('build', 'run')) depends_on('r-rsqlite', type=('build', 'run')) depends_on('r-dbi', type=('build', 'run')) depends_on('r-annotationdbi', type=('build', 'run')) depends_on('r-mass', type=('build', 'run'))