# Copyright 2013-2021 Lawrence Livermore National Security, LLC and other # Spack Project Developers. See the top-level COPYRIGHT file for details. # # SPDX-License-Identifier: (Apache-2.0 OR MIT) from spack import * class Casper(MakefilePackage): """CASPER (Context-Aware Scheme for Paired-End Read) is state-of-the art merging tool in terms of accuracy and robustness. Using this sophisticated merging method, we could get elongated reads from the forward and reverse reads.""" homepage = "http://best.snu.ac.kr/casper/index.php?name=main" url = "http://best.snu.ac.kr/casper/program/casper_v0.8.2.tar.gz" version('0.8.2', sha256='3005e165cebf8ce4e12815b7660a833e0733441b5c7e5ecbfdccef7414b0c914') depends_on('jellyfish@2.2.3:') depends_on('boost') conflicts('%gcc@7.1.0') def install(self, spec, prefix): install_tree('.', prefix) def setup_run_environment(self, env): env.prepend_path('PATH', self.spec.prefix)